Psyllid ID: psy5169

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MPEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTPCTVKY
Secondary Structure (PSIPRED)
cccEEEEEEcccHHHHHHHHHHHHccccEEEEEEEEccEEEEEEEEEEccccHHHHHcccccccccccEEEEccccHHHHHHHHccccccEEEc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccHHHHHHHHHHHHcccccEEEEEEcccccEHHHHHEEHcccHHHHHHHHHcccccccEEEEccccHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MPEQYSLKWNNFHAnlttgfhglfededlVDVSLAVEGKIIQAHKVILSvcspyfikcppkklgqsentnFLSSFAFKIFECLVYfwtpctvky
Flexible Loop (DISEMBL)
MPEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTPCTVKY
Low Complexity Region (SEG)
MPEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTPCTVKY
Disordered region (IsUnstruct)
*****SLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTPCTV**
Disordered Region (DISOPRED)
*PEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTPCTVKY
Disordered Region (DISEMBL)
MPEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTPCTVKY
Disordered Region (DISPRO)
**EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTPCTVKY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTPCTVKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
Q86B87	610	Modifier of mdg4 OS=Droso	no	N/A	0.893	0.137	0.452	2e-15
Q24206	880	Broad-complex core protei	no	N/A	0.638	0.068	0.476	1e-12
Q01295	727	Broad-complex core protei	no	N/A	0.638	0.082	0.476	1e-12
Q9W0K7	977	Protein bric-a-brac 1 OS=	no	N/A	0.563	0.054	0.528	2e-12
Q9V5M3	878	Longitudinals lacking pro	no	N/A	0.563	0.060	0.547	2e-12
Q9V5M6	963	Longitudinals lacking pro	no	N/A	0.563	0.055	0.547	2e-12
Q867Z4	970	Longitudinals lacking pro	no	N/A	0.563	0.054	0.547	2e-12
Q7KQZ4	787	Longitudinals lacking pro	no	N/A	0.563	0.067	0.547	2e-12
P42284	549	Longitudinals lacking pro	no	N/A	0.563	0.096	0.547	2e-12
P42283	891	Longitudinals lacking pro	no	N/A	0.563	0.059	0.547	2e-12

>sp|Q86B87|MMD4_DROME Modifier of mdg4 OS=Drosophila melanogaster GN=mod(mdg4) PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 55/84 (65%)

Query: 3  EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKK 62
          EQ+SL WNNF+ NL+ GFH      DLVDVSLA EG+I++AH+++LSVCSP+F K   + 
Sbjct: 5  EQFSLCWNNFNTNLSAGFHESLCRGDLVDVSLAAEGQIVKAHRLVLSVCSPFFRKMFTQM 64

Query: 63 LGQSENTNFLSSFAFKIFECLVYF 86
             +    FL++ +    + L+ F
Sbjct: 65 PSNTHAIVFLNNVSHSALKDLIQF 88

Component of the gypsy chromatin insulator complex which is required for the function of the gypsy chromatin insulator and other endogenous chromatin insulators. Chromatin insulators are regulatory elements which establish independent domains of transcriptional activity within eukaryotic genomes. Insulators have two defining properties; they can block the communication between an enhancer and a promoter when placed between them and can also buffer transgenes from position effect variegation (PEV). Insulators are proposed to structure the chromatin fiber into independent domains of differing transcriptional potential by promoting the formation of distinct chromatin loops. This chromatin looping may involve the formation of insulator bodies, where homotypic interactions between individual subunits of the insulator complex could promote the clustering of widely spaced insulators at the nuclear periphery. Within the gypsy insulator complex, this protein may control the nature of the repressive effect of su(Hw): in the absence of mod(mdg4) protein, su(Hw) exerts a bidirectional silencing effect, whereas in the presence of mod(mdg4), the silencing effect is unidirectional. Isoform H is specifically required to maintain the pairing of achiasmate homologs in male meiosis I which is mediated by the rDNA repeats on the achiasmate X-Y bivalents. Isoform H also plays a role in apoptotic regulatory pathways.
Drosophila melanogaster (taxid: 7227)

>sp|Q24206|BRC4_DROME Broad-complex core protein isoform 6 OS=Drosophila melanogaster GN=br PE=1 SV=2

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 3/63 (4%)

Query: 3  EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF---IKCP 59
          + + L+WNN+ +++T+ F  L +DE  VDV+LA EG+ I+AH+V+LS CSPYF   +K  
Sbjct: 5  QHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFRELLKST 64

Query: 60 PKK 62
          P K
Sbjct: 65 PCK 67

Broad-complex proteins are required for puffing and transcription of salivary gland late genes during metamorphosis.

Drosophila melanogaster (taxid: 7227)

>sp|Q01295|BRC1_DROME Broad-complex core protein isoforms 1/2/3/4/5 OS=Drosophila melanogaster GN=br PE=1 SV=2

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 3/63 (4%)

Query: 3  EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF---IKCP 59
          + + L+WNN+ +++T+ F  L +DE  VDV+LA EG+ I+AH+V+LS CSPYF   +K  
Sbjct: 5  QHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFRELLKST 64

Query: 60 PKK 62
          P K
Sbjct: 65 PCK 67

Broad-complex proteins are required for puffing and transcription of salivary gland late genes during metamorphosis.

Drosophila melanogaster (taxid: 7227)

>sp|Q9W0K7|BAB1_DROME Protein bric-a-brac 1 OS=Drosophila melanogaster GN=bab1 PE=2 SV=2

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 41/53 (77%)

Query: 3   EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
           +Q+ L+WNN+  NLTT F  L ++E  VDV+LA +G+ ++AHK++LS CSPYF
Sbjct: 100 QQFCLRWNNYQTNLTTIFDQLLQNECFVDVTLACDGRSMKAHKMVLSACSPYF 152

Probably acts as a transcriptional regulator. Required for the specification of the tarsal segment. Also involved in antenna development.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 3  EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          +Q+ L+WNN  + L + F  L E+E LVD +LA EGK ++AHKV+LS CSPYF
Sbjct: 5  QQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M6|LOLA5_DROME Longitudinals lacking protein, isoforms J/P/Q/S/Z OS=Drosophila melanogaster GN=lola PE=1 SV=4

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 3  EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          +Q+ L+WNN  + L + F  L E+E LVD +LA EGK ++AHKV+LS CSPYF
Sbjct: 5  QQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 3  EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          +Q+ L+WNN  + L + F  L E+E LVD +LA EGK ++AHKV+LS CSPYF
Sbjct: 5  QQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 3  EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          +Q+ L+WNN  + L + F  L E+E LVD +LA EGK ++AHKV+LS CSPYF
Sbjct: 5  QQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42284|LOLA2_DROME Longitudinals lacking protein, isoforms H/M/V OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 3  EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          +Q+ L+WNN  + L + F  L E+E LVD +LA EGK ++AHKV+LS CSPYF
Sbjct: 5  QQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query: 3  EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          +Q+ L+WNN  + L + F  L E+E LVD +LA EGK ++AHKV+LS CSPYF
Sbjct: 5  QQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
389614733	349	modifier of mdg4 [Papilio polytes]	0.563	0.151	0.716	2e-17
389611509	290	modifier of mdg4, partial [Papilio xuthu	0.563	0.182	0.716	2e-17
357618658	615	hypothetical protein KGM_11213 [Danaus p	0.563	0.086	0.698	5e-17
163838692	344	Mod(mdg4)-heS00531 [Bombyx mori] gi|4716	0.563	0.154	0.698	6e-17
270011776	647	hypothetical protein TcasGA2_TC005851 [T	0.563	0.081	0.698	1e-16
91088359	336	PREDICTED: similar to Mod(mdg4)-heS00531	0.563	0.157	0.698	1e-16
242007352	356	modifier of mdg4, putative [Pediculus hu	0.563	0.148	0.698	1e-16
242016203	272	bric-A-brac, putative [Pediculus humanus	0.563	0.194	0.698	4e-16
357609737	377	hypothetical protein KGM_08757 [Danaus p	0.585	0.145	0.654	5e-16
242023188	405	zinc finger protein, putative [Pediculus	0.585	0.135	0.690	8e-16

>gi|389614733|dbj|BAM20390.1| modifier of mdg4 [Papilio polytes]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/53 (71%), Positives = 46/53 (86%)

Query: 3  EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          EQ+SL WNNFHAN++ GFHGL    DLVDV+LA EG+I+QAHK++LSVCSPYF
Sbjct: 6  EQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRILQAHKLVLSVCSPYF 58

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611509|dbj|BAM19362.1| modifier of mdg4, partial [Papilio xuthus]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/53 (71%), Positives = 46/53 (86%)

Query: 3  EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          EQ+SL WNNFHAN++ GFHGL    DLVDV+LA EG+I+QAHK++LSVCSPYF
Sbjct: 6  EQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRILQAHKLVLSVCSPYF 58

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357618658|gb|EHJ71553.1| hypothetical protein KGM_11213 [Danaus plexippus]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/53 (69%), Positives = 46/53 (86%)

Query: 3  EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          EQ+SL WNNFHAN++ GFHGL    DLVDV+LA EG+++QAHK++LSVCSPYF
Sbjct: 5  EQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYF 57

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|163838692|ref|NP_001106229.1| Mod(mdg4)-heS00531 [Bombyx mori] gi|47169616|tpe|CAE54311.1| TPA: Mod(mdg4)-heS00531 [Bombyx mori]

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/53 (69%), Positives = 46/53 (86%)

Query: 3  EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          EQ+SL WNNFHAN++ GFHGL    DLVDV+LA EG+++QAHK++LSVCSPYF
Sbjct: 5  EQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYF 57

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011776|gb|EFA08224.1| hypothetical protein TcasGA2_TC005851 [Tribolium castaneum]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 3   EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
           EQ+SL+WNNFH+NLT GFH L E  ++VDV+LAVEG   QAHKV+LS+CSPYF
Sbjct: 316 EQFSLRWNNFHSNLTAGFHELLESSEMVDVTLAVEGHFFQAHKVVLSICSPYF 368

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088359|ref|XP_971758.1| PREDICTED: similar to Mod(mdg4)-heS00531 [Tribolium castaneum]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 3  EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          EQ+SL+WNNFH+NLT GFH L E  ++VDV+LAVEG   QAHKV+LS+CSPYF
Sbjct: 5  EQFSLRWNNFHSNLTAGFHELLESSEMVDVTLAVEGHFFQAHKVVLSICSPYF 57

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007352|ref|XP_002424505.1| modifier of mdg4, putative [Pediculus humanus corporis] gi|212507923|gb|EEB11767.1| modifier of mdg4, putative [Pediculus humanus corporis]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/53 (69%), Positives = 47/53 (88%)

Query: 3   EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
           +Q+SLKWNNF +NL TGFH L ++ED+VDV+LA EGK++ AHK+ILSVCSPYF
Sbjct: 63  DQFSLKWNNFQSNLATGFHDLLQEEDMVDVTLAAEGKMLYAHKIILSVCSPYF 115

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016203|ref|XP_002428719.1| bric-A-brac, putative [Pediculus humanus corporis] gi|212513396|gb|EEB15981.1| bric-A-brac, putative [Pediculus humanus corporis]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 46/53 (86%)

Query: 3  EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          +Q+SLKWNNF +NL TGFH L ++E +VDV+LA EGKI+ AHK+ILSVCSPYF
Sbjct: 14 DQFSLKWNNFQSNLATGFHDLLQEETMVDVTLAAEGKILHAHKIILSVCSPYF 66

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357609737|gb|EHJ66622.1| hypothetical protein KGM_08757 [Danaus plexippus]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 46/55 (83%)

Query: 1  MPEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          +PEQ+SL+WN+FH+NL+  F  L E EDLVDV+LA  G+ +QAHK+ILSVCSPYF
Sbjct: 3  IPEQFSLRWNDFHSNLSQSFQALLEGEDLVDVTLAAGGQYVQAHKLILSVCSPYF 57

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023188|ref|XP_002432018.1| zinc finger protein, putative [Pediculus humanus corporis] gi|212517369|gb|EEB19280.1| zinc finger protein, putative [Pediculus humanus corporis]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 46/55 (83%)

Query: 3  EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIK 57
          EQ+SL+WNNF+ N+  GFH L   ED VDV+LAVEGK+IQAHK++LSVCSPYF K
Sbjct: 8  EQFSLRWNNFNDNMKIGFHDLLRTEDFVDVTLAVEGKLIQAHKMVLSVCSPYFKK 62

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
FB|FBgn0038339	967	CG6118 [Drosophila melanogaste	0.563	0.054	0.622	4.3e-14
FB|FBgn0002781	610	mod(mdg4) "modifier of mdg4" [	0.893	0.137	0.452	5.7e-14
FB|FBgn0022238	127	lolal "lola like" [Drosophila	0.563	0.417	0.490	2.8e-11
FB|FBgn0000210	880	br "broad" [Drosophila melanog	0.829	0.088	0.409	3.7e-11
FB|FBgn0004870	977	bab1 "bric a brac 1" [Drosophi	0.563	0.054	0.528	8.9e-11
FB|FBgn0005630	970	lola "longitudinals lacking" [	0.563	0.054	0.547	1.1e-10
FB|FBgn0025525	1067	bab2 "bric a brac 2" [Drosophi	0.563	0.049	0.528	1.3e-10
FB|FBgn0003870	813	ttk "tramtrack" [Drosophila me	0.563	0.065	0.490	6.6e-10
FB|FBgn0264442	904	ab "abrupt" [Drosophila melano	0.563	0.058	0.490	9.4e-10
FB|FBgn0029822	553	CG12236 [Drosophila melanogast	0.563	0.095	0.528	2.7e-09

FB|FBgn0038339 CG6118 [Drosophila melanogaster (taxid:7227)]

 Score = 194 (73.4 bits), Expect = 4.3e-14, P = 4.3e-14
 Identities = 33/53 (62%), Positives = 42/53 (79%)

Query:     3 EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
             +QY L WNNFH N+  GFH L +DE +VDV++A  GKI +AHK++LSVCSPYF
Sbjct:   391 DQYLLSWNNFHGNMCRGFHSLQKDEKMVDVTIAAGGKIFKAHKLVLSVCSPYF 443

GO:0007052 "mitotic spindle organization" evidence=IMP

FB|FBgn0002781 mod(mdg4) "modifier of mdg4" [Drosophila melanogaster (taxid:7227)]

 Score = 190 (71.9 bits), Expect = 5.7e-14, P = 5.7e-14
 Identities = 38/84 (45%), Positives = 55/84 (65%)

Query:     3 EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKK 62
             EQ+SL WNNF+ NL+ GFH      DLVDVSLA EG+I++AH+++LSVCSP+F K   + 
Sbjct:     5 EQFSLCWNNFNTNLSAGFHESLCRGDLVDVSLAAEGQIVKAHRLVLSVCSPFFRKMFTQM 64

Query:    63 LGQSENTNFLSSFAFKIFECLVYF 86
                +    FL++ +    + L+ F
Sbjct:    65 PSNTHAIVFLNNVSHSALKDLIQF 88

GO:0005515 "protein binding" evidence=IPI

GO:0003682 "chromatin binding" evidence=IMP

GO:0000785 "chromatin" evidence=IMP

GO:0001672 "regulation of chromatin assembly or disassembly" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0006917 "induction of apoptosis" evidence=IMP;TAS

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0008354 "germ cell migration" evidence=IGI;IMP

GO:0008195 "phosphatidate phosphatase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0006997 "nucleus organization" evidence=TAS

GO:0006325 "chromatin organization" evidence=NAS

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0007060 "male meiosis chromosome segregation" evidence=IMP

GO:0007141 "male meiosis I" evidence=IMP

FB|FBgn0022238 lolal "lola like" [Drosophila melanogaster (taxid:7227)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 26/53 (49%), Positives = 38/53 (71%)

Query:     3 EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
             +Q+ LKWN+F  N+ T F  L +++   DV+LA EG+  +AHK++LS CSPYF
Sbjct:     6 QQFFLKWNDFQTNMVTSFRHLRDEKSFTDVTLACEGQTCKAHKMVLSACSPYF 58

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0006342 "chromatin silencing" evidence=IMP

GO:0016458 "gene silencing" evidence=IMP

GO:0031519 "PcG protein complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0007435 "salivary gland morphogenesis" evidence=IMP

FB|FBgn0000210 br "broad" [Drosophila melanogaster (taxid:7227)]

 Score = 166 (63.5 bits), Expect = 3.7e-11, P = 3.7e-11
 Identities = 34/83 (40%), Positives = 53/83 (63%)

Query:     3 EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF---IKCP 59
             + + L+WNN+ +++T+ F  L +DE  VDV+LA EG+ I+AH+V+LS CSPYF   +K  
Sbjct:     5 QHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFRELLKST 64

Query:    60 PKK--LGQSENTNFLSSFAFKIF 80
             P K  +   ++ NF+   A   F
Sbjct:    65 PCKHPVILLQDVNFMDLHALVEF 87

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0007458 "progression of morphogenetic furrow involved in compound eye morphogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0007552 "metamorphosis" evidence=NAS;TAS

GO:0035071 "salivary gland cell autophagic cell death" evidence=NAS

GO:0035070 "salivary gland histolysis" evidence=NAS;IMP

GO:0001752 "compound eye photoreceptor fate commitment" evidence=IMP

GO:0035072 "ecdysone-mediated induction of salivary gland cell autophagic cell death" evidence=NAS

GO:0006914 "autophagy" evidence=IMP

GO:0008219 "cell death" evidence=TAS

GO:0040034 "regulation of development, heterochronic" evidence=IMP;TAS

GO:0009608 "response to symbiont" evidence=IMP

GO:0035075 "response to ecdysone" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0007562 "eclosion" evidence=IEP

GO:0071390 "cellular response to ecdysone" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048747 "muscle fiber development" evidence=IGI

GO:0048477 "oogenesis" evidence=IMP

GO:0048808 "male genitalia morphogenesis" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

FB|FBgn0004870 bab1 "bric a brac 1" [Drosophila melanogaster (taxid:7227)]

 Score = 163 (62.4 bits), Expect = 8.9e-11, P = 8.9e-11
 Identities = 28/53 (52%), Positives = 41/53 (77%)

Query:     3 EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
             +Q+ L+WNN+  NLTT F  L ++E  VDV+LA +G+ ++AHK++LS CSPYF
Sbjct:   100 QQFCLRWNNYQTNLTTIFDQLLQNECFVDVTLACDGRSMKAHKMVLSACSPYF 152

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEP;ISS

GO:0007548 "sex differentiation" evidence=IGI;IMP;TAS

GO:0048071 "sex-specific pigmentation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048092 "negative regulation of male pigmentation" evidence=NAS

GO:0046660 "female sex differentiation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0007455 "eye-antennal disc morphogenesis" evidence=IEP

GO:0003677 "DNA binding" evidence=NAS

GO:0048070 "regulation of developmental pigmentation" evidence=TAS

GO:0048086 "negative regulation of developmental pigmentation" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003680 "AT DNA binding" evidence=IDA

FB|FBgn0005630 lola "longitudinals lacking" [Drosophila melanogaster (taxid:7227)]

 Score = 162 (62.1 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 29/53 (54%), Positives = 39/53 (73%)

Query:     3 EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
             +Q+ L+WNN  + L + F  L E+E LVD +LA EGK ++AHKV+LS CSPYF
Sbjct:     5 QQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0007411 "axon guidance" evidence=IGI;NAS;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0007409 "axonogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0016199 "axon midline choice point recognition" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0007464 "R3/R4 cell fate commitment" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0025525 bab2 "bric a brac 2" [Drosophila melanogaster (taxid:7227)]

 Score = 162 (62.1 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query:     3 EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
             +Q+ L+WNN+ +NLT  F  L + E  VDV+L+ EG  I+AHK++LS CSPYF
Sbjct:   196 QQFCLRWNNYQSNLTNVFDELLQSESFVDVTLSCEGHSIKAHKMVLSACSPYF 248

GO:0005515 "protein binding" evidence=IPI

GO:0006351 "transcription, DNA-dependent" evidence=IEP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0007455 "eye-antennal disc morphogenesis" evidence=ISS

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0003677 "DNA binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005701 "polytene chromosome chromocenter" evidence=IDA

FB|FBgn0003870 ttk "tramtrack" [Drosophila melanogaster (taxid:7227)]

 Score = 147 (56.8 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
 Identities = 26/53 (49%), Positives = 38/53 (71%)

Query:     3 EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
             +++ L+WNN  +NL + F  L   E   DV+LAVEG+ ++AHK++LS CSPYF
Sbjct:     6 QRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYF 58

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0045467 "R7 cell development" evidence=IMP;TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0017053 "transcriptional repressor complex" evidence=IPI

GO:0003682 "chromatin binding" evidence=IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0030707 "ovarian follicle cell development" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0035001 "dorsal trunk growth, open tracheal system" evidence=IMP

GO:0060446 "branching involved in open tracheal system development" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0048053 "R1/R6 development" evidence=IMP

GO:0048750 "compound eye corneal lens morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

FB|FBgn0264442 ab "abrupt" [Drosophila melanogaster (taxid:7227)]

 Score = 153 (58.9 bits), Expect = 9.4e-10, P = 9.4e-10
 Identities = 26/53 (49%), Positives = 39/53 (73%)

Query:     3 EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
             + Y+LKWN+F +++ + F  L ++ED VDV+LA + +   AHKV+LS CSPYF
Sbjct:    76 QHYALKWNDFQSSILSSFRHLRDEEDFVDVTLACDERSFTAHKVVLSACSPYF 128

GO:0016203 "muscle attachment" evidence=IMP

GO:0008039 "synaptic target recognition" evidence=IMP

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0007423 "sensory organ development" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0016198 "axon choice point recognition" evidence=TAS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

FB|FBgn0029822 CG12236 [Drosophila melanogaster (taxid:7227)]

 Score = 146 (56.5 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 28/53 (52%), Positives = 38/53 (71%)

Query:     3 EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
             +QYSL+WNN+  +LT        ++D VDVSL V+G+ I+AHKV+LS CS YF
Sbjct:     5 QQYSLRWNNYLRHLTYSLDNHRLNDDFVDVSLCVDGRRIKAHKVVLSSCSSYF 57

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	94
pfam00651	101	pfam00651, BTB, BTB/POZ domain	8e-12
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	4e-06

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 55.7 bits (135), Expect = 8e-12
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 20 FHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKL--GQSENTNFLSSFAF 77
           + L E+ +L DV+L V  K   AHK +L+ CSPYF     K L  G  E    L   + 
Sbjct: 1  LNELRENGELCDVTLVVGDKEFHAHKAVLAACSPYF-----KALFTGNKEVEITLEDVSP 55

Query: 78 KIFECLVYF 86
          + FE L+ F
Sbjct: 56 EDFEALLEF 64

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 41.1 bits (97), Expect = 4e-06
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 31 DVSLAVEGKIIQAHKVILSVCSPYF 55
          DV+L V GK   AHK +L+  SPYF
Sbjct: 1  DVTLVVGGKKFHAHKAVLAAHSPYF 25

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
PHA02713	557	hypothetical protein; Provisional	99.88
KOG4441|consensus	571		99.87
PHA02790	480	Kelch-like protein; Provisional	99.81
KOG4350|consensus	620		99.79
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.79
PHA03098	534	kelch-like protein; Provisional	99.74
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	99.67
KOG4591|consensus	280		99.59
KOG2075|consensus	521		99.49
KOG0783|consensus	1267		99.17
KOG0783|consensus	1267		98.74
KOG2838|consensus	401		98.74
KOG4682|consensus	488		98.57
KOG2838|consensus	401		97.78
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	97.69
KOG0511|consensus	516		97.15
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	97.0
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	96.95
KOG0511|consensus	516		96.34
KOG2716|consensus	230		96.31
KOG1987|consensus	297		94.89
KOG2714|consensus	465		93.86
KOG3473|consensus	112		93.75
KOG4390|consensus	632		83.68
KOG1724|consensus	162		80.2

>PHA02713 hypothetical protein; Provisional

Probab=99.88  E-value=4.4e-23  Score=152.49  Aligned_cols=87  Identities=21%  Similarity=0.285  Sum_probs=78.9

Q ss_pred             eeeCCchHHHHHHHHhhhhCCCceeEEEEEC-CeEEEhhHHHHhhcCHHHHhcCCCCCCCCC--CccccCCCCHHHHHHh
Q psy5169           7 LKWNNFHANLTTGFHGLFEDEDLVDVSLAVE-GKIIQAHKVILSVCSPYFIKCPPKKLGQSE--NTNFLSSFAFKIFECL   83 (94)
Q Consensus         7 ~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~-~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~--~~~~l~~v~~~~~~~l   83 (94)
                      +.+..|+..+++.|+++|.++.+|||+|.++ |+.|||||+|||++|+||++||++++.|+.  ..+.|.++++++++.+
T Consensus         3 ~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~l   82 (557)
T PHA02713          3 IDDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNI   82 (557)
T ss_pred             cchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHH
Confidence            3456789999999999999999999999997 899999999999999999999999998753  4458999999999999


Q ss_pred             hhhhcCCeec
Q psy5169          84 VYFWTPCTVK   93 (94)
Q Consensus        84 l~fly~~~v~   93 (94)
                      |+|+|||++.
T Consensus        83 l~y~Yt~~i~   92 (557)
T PHA02713         83 VQYLYNRHIS   92 (557)
T ss_pred             HHHhcCCCCC
Confidence            9999999753

>KOG4441|consensus

Probab=99.87  E-value=3e-22  Score=148.45  Aligned_cols=89  Identities=26%  Similarity=0.344  Sum_probs=83.8

Q ss_pred             eeeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-ccCCCCHHHHHHh
Q psy5169           5 YSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-FLSSFAFKIFECL   83 (94)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-~l~~v~~~~~~~l   83 (94)
                      ..+...+|...+++.|+.+|..+.+|||++.+++++|+|||+|||++|+||++||++++.|+.... .+.++++.+++.+
T Consensus        12 ~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~l   91 (571)
T KOG4441|consen   12 SEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELL   91 (571)
T ss_pred             cccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHH
Confidence            356777899999999999999999999999999999999999999999999999999999998877 9999999999999


Q ss_pred             hhhhcCCeec
Q psy5169          84 VYFWTPCTVK   93 (94)
Q Consensus        84 l~fly~~~v~   93 (94)
                      |+|+||+++.
T Consensus        92 l~y~Yt~~i~  101 (571)
T KOG4441|consen   92 LDYAYTGKLE  101 (571)
T ss_pred             HHHhhcceEE
Confidence            9999999975

>PHA02790 Kelch-like protein; Provisional

Probab=99.81  E-value=2.4e-20  Score=135.96  Aligned_cols=75  Identities=17%  Similarity=0.198  Sum_probs=65.2

Q ss_pred             HHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcccc--CCCCHHHHHHhhhhhcCCeec
Q psy5169          18 TGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFL--SSFAFKIFECLVYFWTPCTVK   93 (94)
Q Consensus        18 ~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l--~~v~~~~~~~ll~fly~~~v~   93 (94)
                      +++-.++.++.+|||++.+|+ +|||||+|||++|+|||+||.+++.|+...+.+  .++++++|+.+|+|+|||++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~   87 (480)
T PHA02790         11 KNILALSMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVY   87 (480)
T ss_pred             hhHHHHHhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEE
Confidence            556678999999998766554 899999999999999999999999998664533  489999999999999999975

>KOG4350|consensus

Probab=99.79  E-value=5.3e-20  Score=130.85  Aligned_cols=82  Identities=27%  Similarity=0.373  Sum_probs=76.2

Q ss_pred             hHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-ccCCCCHHHHHHhhhhhcCCe
Q psy5169          13 HANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-FLSSFAFKIFECLVYFWTPCT   91 (94)
Q Consensus        13 ~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-~l~~v~~~~~~~ll~fly~~~   91 (94)
                      ..++.+.+.+++.+.+++||+++++++.|||||+|||+||+|||+|+-+++.|+++.. +|++-..++|+.+|+|||||+
T Consensus        28 ~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~  107 (620)
T KOG4350|consen   28 SNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGK  107 (620)
T ss_pred             ccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcc
Confidence            4456788999999999999999999999999999999999999999999999998877 999999999999999999999


Q ss_pred             ecC
Q psy5169          92 VKY   94 (94)
Q Consensus        92 v~~   94 (94)
                      +.+
T Consensus       108 ~~l  110 (620)
T KOG4350|consen  108 IDL  110 (620)
T ss_pred             eec
Confidence            864

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.79  E-value=1.4e-19  Score=108.07  Aligned_cols=74  Identities=26%  Similarity=0.406  Sum_probs=62.7

Q ss_pred             HHhhhhCCCceeEEEEEC-CeEEEhhHHHHhhcCHHHHhcCCCC-CCCCCCc-cccCCCCHHHHHHhhhhhcCCeec
Q psy5169          20 FHGLFEDEDLVDVSLAVE-GKIIQAHKVILSVCSPYFIKCPPKK-LGQSENT-NFLSSFAFKIFECLVYFWTPCTVK   93 (94)
Q Consensus        20 l~~~~~~~~~~Dv~l~~~-~~~~~~Hk~vLa~~S~yF~~~f~~~-~~e~~~~-~~l~~v~~~~~~~ll~fly~~~v~   93 (94)
                      |++++.++.++|++|.++ ++.|+|||.||+++|+||+++|.+. ..+.... +.++++++++++.+++|+|++++.
T Consensus         1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~   77 (111)
T PF00651_consen    1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIE   77 (111)
T ss_dssp             HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEE
T ss_pred             ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCccc
Confidence            578899999999999999 7999999999999999999999988 3444433 478999999999999999999874

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PHA03098 kelch-like protein; Provisional

Probab=99.74  E-value=1.9e-18  Score=126.65  Aligned_cols=65  Identities=28%  Similarity=0.412  Sum_probs=60.0

Q ss_pred             CCCceeEEEEE--CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhhhhhcCCeec
Q psy5169          26 DEDLVDVSLAV--EGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTPCTVK   93 (94)
Q Consensus        26 ~~~~~Dv~l~~--~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~fly~~~v~   93 (94)
                      ++.+|||+|.+  +|++|+|||+|||++|+||++||.+++.  ...+.+++ ++++|+.+|+|+|||++.
T Consensus         6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~~~~~~~~l~y~Ytg~~~   72 (534)
T PHA03098          6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-DYDSFNEVIKYIYTGKIN   72 (534)
T ss_pred             cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-CHHHHHHHHHHhcCCceE
Confidence            88999999998  9999999999999999999999999887  34558888 999999999999999975

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=99.67  E-value=2e-16  Score=89.89  Aligned_cols=63  Identities=32%  Similarity=0.554  Sum_probs=56.5

Q ss_pred             eEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-ccCCCCHHHHHHhhhhhcCCeec
Q psy5169          31 DVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-FLSSFAFKIFECLVYFWTPCTVK   93 (94)
Q Consensus        31 Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-~l~~v~~~~~~~ll~fly~~~v~   93 (94)
                      |+++.++|+.|++||.+|+++|+||++||.+++.+..... .++++++++|+.+|+|+|++++.
T Consensus         1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~   64 (90)
T smart00225        1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLD   64 (90)
T ss_pred             CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceee
Confidence            7889999999999999999999999999998877653444 88899999999999999999874

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG4591|consensus

Probab=99.59  E-value=1.6e-15  Score=99.82  Aligned_cols=85  Identities=20%  Similarity=0.280  Sum_probs=75.0

Q ss_pred             eeCCchHHHHHHHHhhhhCCCceeEEEEECC---eEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhh
Q psy5169           8 KWNNFHANLTTGFHGLFEDEDLVDVSLAVEG---KIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLV   84 (94)
Q Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~---~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll   84 (94)
                      +.++|+++++.-...++.+.+|+|++|.++|   +.+||||.|||+||+++.  |.++..|......++|++++++...|
T Consensus        45 s~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad~Ea~~t~i  122 (280)
T KOG4591|consen   45 SPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDADFEAFHTAI  122 (280)
T ss_pred             CchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccCHHHHHHhh
Confidence            3567899999999999999999999999974   779999999999999997  66665666555699999999999999


Q ss_pred             hhhcCCeecC
Q psy5169          85 YFWTPCTVKY   94 (94)
Q Consensus        85 ~fly~~~v~~   94 (94)
                      +|+||..++|
T Consensus       123 RWIYTDEidf  132 (280)
T KOG4591|consen  123 RWIYTDEIDF  132 (280)
T ss_pred             eeeecccccc
Confidence            9999999986

>KOG2075|consensus

Probab=99.49  E-value=6.1e-14  Score=101.19  Aligned_cols=87  Identities=24%  Similarity=0.248  Sum_probs=77.7

Q ss_pred             eeeCCchHHHHHHHHhhhhCCCceeEEEEECC-----eEEEhhHHHHhhcCHHHHhcCCCCCCCC-CCccccCCCCHHHH
Q psy5169           7 LKWNNFHANLTTGFHGLFEDEDLVDVSLAVEG-----KIIQAHKVILSVCSPYFIKCPPKKLGQS-ENTNFLSSFAFKIF   80 (94)
Q Consensus         7 ~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~-----~~~~~Hk~vLa~~S~yF~~~f~~~~~e~-~~~~~l~~v~~~~~   80 (94)
                      +.|..--..+......++++...+|+.+++++     +.|||||.|||..|++|++||.+++.++ ...+.++++.+++|
T Consensus        92 ~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaF  171 (521)
T KOG2075|consen   92 PNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAF  171 (521)
T ss_pred             cccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHh
Confidence            35666677888888999999999999999974     5799999999999999999999999998 55559999999999


Q ss_pred             HHhhhhhcCCeec
Q psy5169          81 ECLVYFWTPCTVK   93 (94)
Q Consensus        81 ~~ll~fly~~~v~   93 (94)
                      ..+|+|||+..|+
T Consensus       172 l~~L~flYsdev~  184 (521)
T KOG2075|consen  172 LAFLRFLYSDEVK  184 (521)
T ss_pred             HHHHHHHhcchhh
Confidence            9999999998876

>KOG0783|consensus

Probab=99.17  E-value=1.6e-11  Score=93.70  Aligned_cols=66  Identities=26%  Similarity=0.280  Sum_probs=54.8

Q ss_pred             CCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCC-------------CccccCCCCHHHHHHhhhhhcCCe
Q psy5169          26 DEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSE-------------NTNFLSSFAFKIFECLVYFWTPCT   91 (94)
Q Consensus        26 ~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~-------------~~~~l~~v~~~~~~~ll~fly~~~   91 (94)
                      ...+.||+|.||++.|+|||.|||+||++||.+|......+.             ..+..+++.|..|+.+|+||||+|
T Consensus       555 ~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt  633 (1267)
T KOG0783|consen  555 KDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDT  633 (1267)
T ss_pred             ccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccc
Confidence            346889999999999999999999999999999866433322             122367999999999999999986

>KOG0783|consensus

Probab=98.74  E-value=1.5e-09  Score=83.22  Aligned_cols=63  Identities=22%  Similarity=0.329  Sum_probs=52.7

Q ss_pred             CCceeEEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-ccCCCCHHHHHHhhhhhcC
Q psy5169          27 EDLVDVSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-FLSSFAFKIFECLVYFWTP   89 (94)
Q Consensus        27 ~~~~Dv~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-~l~~v~~~~~~~ll~fly~   89 (94)
                      ...-|+.|.+ +|+.++|||++|++|++||..||..-+.|+.... .+..+..+.|+.+|+|+|+
T Consensus       708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs  772 (1267)
T KOG0783|consen  708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYS  772 (1267)
T ss_pred             ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHc
Confidence            4455777766 7788999999999999999999999888876644 5556789999999999994

>KOG2838|consensus

Probab=98.74  E-value=1.6e-08  Score=69.70  Aligned_cols=79  Identities=14%  Similarity=0.223  Sum_probs=64.2

Q ss_pred             hHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc---ccCCCCHHHHHHhhhhhcC
Q psy5169          13 HANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN---FLSSFAFKIFECLVYFWTP   89 (94)
Q Consensus        13 ~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~---~l~~v~~~~~~~ll~fly~   89 (94)
                      ...++.++...+......|+-|+.....|||||++||+|+|+|+.+...+.......+   ..-+++.++|+.+|.++|+
T Consensus       114 a~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~t  193 (401)
T KOG2838|consen  114 ANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLIT  193 (401)
T ss_pred             hhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHh
Confidence            3456777888888888899999999999999999999999999988877543332322   3458999999999999998


Q ss_pred             Ce
Q psy5169          90 CT   91 (94)
Q Consensus        90 ~~   91 (94)
                      |.
T Consensus       194 gE  195 (401)
T KOG2838|consen  194 GE  195 (401)
T ss_pred             cc
Confidence            85

>KOG4682|consensus

Probab=98.57  E-value=5.3e-08  Score=69.87  Aligned_cols=73  Identities=19%  Similarity=0.120  Sum_probs=64.7

Q ss_pred             HHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc---cc--CCCCHHHHHHhhhhhcCCeec
Q psy5169          20 FHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN---FL--SSFAFKIFECLVYFWTPCTVK   93 (94)
Q Consensus        20 l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~---~l--~~v~~~~~~~ll~fly~~~v~   93 (94)
                      +..++.+|.-+||++.+-|++++.||.-|.. |+||.+||+|.+.|+...+   +|  +.|+.+++..++.=||.+.|+
T Consensus        60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~Q-S~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve  137 (488)
T KOG4682|consen   60 YQNLFLQGENSDVILEALGFEWRLHKPYLFQ-SEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE  137 (488)
T ss_pred             HHHHHhcCCCcceehhhccceeeeeeeeeec-cHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee
Confidence            4578889999999999999999999999987 8999999999999987754   33  369999999999999998875

>KOG2838|consensus

Probab=97.78  E-value=1.2e-05  Score=55.75  Aligned_cols=80  Identities=21%  Similarity=0.299  Sum_probs=52.2

Q ss_pred             HHHHHHHHhhhhCCCceeEEEE--ECCe--------------EEEhhHHHHhhcCHHHHhcCCCCCCCCC----------
Q psy5169          14 ANLTTGFHGLFEDEDLVDVSLA--VEGK--------------IIQAHKVILSVCSPYFIKCPPKKLGQSE----------   67 (94)
Q Consensus        14 ~~~~~~l~~~~~~~~~~Dv~l~--~~~~--------------~~~~Hk~vLa~~S~yF~~~f~~~~~e~~----------   67 (94)
                      ..+-.+++.+++.....|+.|.  ++|+              +++||++|.|+||++||.++...-.+..          
T Consensus       220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~P  299 (401)
T KOG2838|consen  220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRP  299 (401)
T ss_pred             hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCC
Confidence            3455677888888877776664  3432              5999999999999999998754322211          


Q ss_pred             CccccCC-CCHHHH-HHhhhhhcCCeec
Q psy5169          68 NTNFLSS-FAFKIF-ECLVYFWTPCTVK   93 (94)
Q Consensus        68 ~~~~l~~-v~~~~~-~~ll~fly~~~v~   93 (94)
                      ..+.+++ |=|..+ -.+|.+|||..++
T Consensus       300 kRIifdE~I~PkafA~i~lhclYTD~lD  327 (401)
T KOG2838|consen  300 KRIIFDELIFPKAFAPIFLHCLYTDRLD  327 (401)
T ss_pred             ceeechhhhcchhhhhhhhhhheecccc
Confidence            1122221 333333 4678999998875

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=97.69  E-value=0.00012  Score=39.72  Aligned_cols=55  Identities=13%  Similarity=0.114  Sum_probs=43.1

Q ss_pred             EEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhhhhhc
Q psy5169          32 VSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWT   88 (94)
Q Consensus        32 v~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~fly   88 (94)
                      ++|+. ||+.|.+.+.+.. .|..++.|+.+...+.. .+++++++..+++.+++|++
T Consensus         3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~-~Ipl~~v~~~~L~kViewc~   58 (62)
T PF03931_consen    3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE-PIPLPNVSSRILKKVIEWCE   58 (62)
T ss_dssp             EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT-EEEETTS-HHHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc-ccccCccCHHHHHHHHHHHH
Confidence            45655 8899999999877 58999999976443333 56899999999999999974

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>KOG0511|consensus

Probab=97.15  E-value=0.00034  Score=50.54  Aligned_cols=53  Identities=17%  Similarity=-0.011  Sum_probs=43.3

Q ss_pred             eEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-----ccCCCCHHHHHHhhhhhcCCee
Q psy5169          39 KIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-----FLSSFAFKIFECLVYFWTPCTV   92 (94)
Q Consensus        39 ~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-----~l~~v~~~~~~~ll~fly~~~v   92 (94)
                      ..+|||+++++. .+||+.||.+++.|+....     .+|.....+.+..++|+|+.+.
T Consensus       301 ~RyP~hla~i~R-~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~t  358 (516)
T KOG0511|consen  301 DRYPAHLARILR-VEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQT  358 (516)
T ss_pred             ccccHHHHHHHH-HHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccc
Confidence            449999999987 5999999999988854211     5677888899999999998764

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.00  E-value=0.00033  Score=40.61  Aligned_cols=58  Identities=14%  Similarity=0.254  Sum_probs=43.4

Q ss_pred             EEEEECCeEEEhhHHHHh-hcCHHHHhcCCCC---CCCCCCccccCCCCHHHHHHhhhhhcC
Q psy5169          32 VSLAVEGKIIQAHKVILS-VCSPYFIKCPPKK---LGQSENTNFLSSFAFKIFECLVYFWTP   89 (94)
Q Consensus        32 v~l~~~~~~~~~Hk~vLa-~~S~yF~~~f~~~---~~e~~~~~~l~~v~~~~~~~ll~fly~   89 (94)
                      |.|.|||+.|..-+..|. ...++|.+++...   ..........-|-+|..|+.+|+|+-+
T Consensus         1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~   62 (94)
T PF02214_consen    1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRT   62 (94)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHH
T ss_pred             CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhh
Confidence            678999999999999998 5567899998864   112222333335899999999999977

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>smart00512 Skp1 Found in Skp1 protein family

Probab=96.95  E-value=0.0028  Score=37.57  Aligned_cols=56  Identities=14%  Similarity=0.154  Sum_probs=43.6

Q ss_pred             EEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCC--CccccCCCCHHHHHHhhhhhc
Q psy5169          32 VSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQSE--NTNFLSSFAFKIFECLVYFWT   88 (94)
Q Consensus        32 v~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~--~~~~l~~v~~~~~~~ll~fly   88 (94)
                      ++++. +|..|.+.+.+.. .|..++.|+.+...+..  ..+++++|+..+|+.+++|++
T Consensus         4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~   62 (104)
T smart00512        4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCE   62 (104)
T ss_pred             EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHH
Confidence            55654 8899999999875 68999999876432222  345999999999999999985

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>KOG0511|consensus

Probab=96.34  E-value=0.0011  Score=47.96  Aligned_cols=62  Identities=16%  Similarity=0.095  Sum_probs=44.1

Q ss_pred             CceeEEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhhhhhcCC
Q psy5169          28 DLVDVSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTPC   90 (94)
Q Consensus        28 ~~~Dv~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~fly~~   90 (94)
                      ...|+++.. .|+.|-|||..|++||++|...+..-+...++.+.. .+-+.+|..++.|+|-.
T Consensus       148 ~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~heI~~~-~v~~~~f~~flk~lyl~  210 (516)
T KOG0511|consen  148 CCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQGHEIEAH-RVILSAFSPFLKQLYLN  210 (516)
T ss_pred             cccchHHHhhccccccHHHHHHHhhhcccCchhhhhccccCchhhh-hhhHhhhhHHHHHHHHh
Confidence            457888876 778899999999999998865554433333332222 36778899999998744

>KOG2716|consensus

Probab=96.31  E-value=0.0099  Score=40.29  Aligned_cols=61  Identities=20%  Similarity=0.319  Sum_probs=49.1

Q ss_pred             EEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCC-CCCCcc-ccCCCCHHHHHHhhhhhcCCee
Q psy5169          32 VSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLG-QSENTN-FLSSFAFKIFECLVYFWTPCTV   92 (94)
Q Consensus        32 v~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~-e~~~~~-~l~~v~~~~~~~ll~fly~~~v   92 (94)
                      |.+-|||..|...+.-|.....+|++|+..+.. +....- ..-|=+|.-|+.+|+||=.|.+
T Consensus         7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv   69 (230)
T KOG2716|consen    7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDV   69 (230)
T ss_pred             EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccc
Confidence            446789999999999999999999999998754 222222 4556899999999999987765

>KOG1987|consensus

Probab=94.89  E-value=0.0068  Score=41.75  Aligned_cols=61  Identities=18%  Similarity=0.149  Sum_probs=45.9

Q ss_pred             eeEEEEE--CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-ccCCCCHHHHHHhhhhhcCC
Q psy5169          30 VDVSLAV--EGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-FLSSFAFKIFECLVYFWTPC   90 (94)
Q Consensus        30 ~Dv~l~~--~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-~l~~v~~~~~~~ll~fly~~   90 (94)
                      -|+....  .+..+.+|++++++++++|+.|+..+..+..... .+.+.++..++.+..|.|+.
T Consensus        99 ~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~  162 (297)
T KOG1987|consen   99 LPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLP  162 (297)
T ss_pred             cChHHhhcccCcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEec
Confidence            4444433  3566999999999999999999987654443333 77788999999999998873

>KOG2714|consensus

Probab=93.86  E-value=0.16  Score=37.46  Aligned_cols=62  Identities=13%  Similarity=0.267  Sum_probs=47.3

Q ss_pred             EEEEECCeEEEhhHHHHhhcC--HHHHhcCCCCCCCCCCcc--ccCCCCHHHHHHhhhhhcCCeec
Q psy5169          32 VSLAVEGKIIQAHKVILSVCS--PYFIKCPPKKLGQSENTN--FLSSFAFKIFECLVYFWTPCTVK   93 (94)
Q Consensus        32 v~l~~~~~~~~~Hk~vLa~~S--~yF~~~f~~~~~e~~~~~--~l~~v~~~~~~~ll~fly~~~v~   93 (94)
                      |.|-|||+.|.--+.-|+...  .+|-+++++.+.-.....  ..-|=+|+.|..+|+||-|+.+.
T Consensus        13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~   78 (465)
T KOG2714|consen   13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLD   78 (465)
T ss_pred             EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCC
Confidence            556789999998888887766  588999987654333222  33358999999999999998753

>KOG3473|consensus

Probab=93.75  E-value=0.17  Score=30.08  Aligned_cols=55  Identities=13%  Similarity=0.058  Sum_probs=40.5

Q ss_pred             EEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCCC--CCcc-ccCCCCHHHHHHhhhhh
Q psy5169          32 VSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQS--ENTN-FLSSFAFKIFECLVYFW   87 (94)
Q Consensus        32 v~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~--~~~~-~l~~v~~~~~~~ll~fl   87 (94)
                      |.++. +|++|-.-|-+-.. |.-.|+|+.+....+  .... .+++++...++.+.+|+
T Consensus        19 VkLvS~Ddhefiikre~Amt-SgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl   77 (112)
T KOG3473|consen   19 VKLVSSDDHEFIIKREHAMT-SGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYL   77 (112)
T ss_pred             eEeecCCCcEEEEeehhhhh-hhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHh
Confidence            34444 67777666665444 789999999875544  3333 89999999999999997

>KOG4390|consensus

Probab=83.68  E-value=2  Score=31.86  Aligned_cols=60  Identities=17%  Similarity=0.256  Sum_probs=43.5

Q ss_pred             EEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCC----CCCccccCCCCHHHHHHhhhhhcCCeecC
Q psy5169          32 VSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQ----SENTNFLSSFAFKIFECLVYFWTPCTVKY   94 (94)
Q Consensus        32 v~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e----~~~~~~l~~v~~~~~~~ll~fly~~~v~~   94 (94)
                      +++.+.|+.|.-+|.-|-.   |-+.++.+..+|    .+.....-|-+|+.|+++|+|+-||+..|
T Consensus        42 lvlNvSGrRFeTWknTLer---yPdTLLGSsEkeFFy~~dt~eYFFDRDPdiFRhvLnFYRTGkLHy  105 (632)
T KOG4390|consen   42 LVLNVSGRRFETWKNTLER---YPDTLLGSSEKEFFYDEDTGEYFFDRDPDIFRHVLNFYRTGKLHY  105 (632)
T ss_pred             EEEeccccchhHHHhHHHh---CchhhhCCcchheeecCCcccccccCChHHHHHHHHHhhcCcccC
Confidence            3445689999999998876   555666554332    12223566789999999999999998765

>KOG1724|consensus

Probab=80.20  E-value=5.7  Score=25.62  Aligned_cols=53  Identities=13%  Similarity=0.120  Sum_probs=38.3

Q ss_pred             ECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCC-CccccCCCCHHHHHHhhhhhcC
Q psy5169          36 VEGKIIQAHKVILSVCSPYFIKCPPKKLGQSE-NTNFLSSFAFKIFECLVYFWTP   89 (94)
Q Consensus        36 ~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~-~~~~l~~v~~~~~~~ll~fly~   89 (94)
                      .+|+.|.+-..+... |.-..+++........ ..++|+.|...+|+.+|+|.+-
T Consensus        12 sDG~~f~ve~~~a~~-s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~   65 (162)
T KOG1724|consen   12 SDGEIFEVEEEVARQ-SQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKK   65 (162)
T ss_pred             cCCceeehhHHHHHH-hHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHH
Confidence            388889888887655 6777776654322222 3459999999999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	94
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	2e-12
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	5e-12
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	2e-11
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	3e-11
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	6e-11
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	6e-11
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	7e-11
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	1e-10
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	4e-10
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	5e-10
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	9e-10
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	1e-09
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	1e-09
2vpk_A	116	Myoneurin; transcription regulation, transcription	1e-09
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	2e-09
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	3e-09
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	3e-09
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	3e-09
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	7e-09
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	8e-09

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145

 Score = 57.9 bits (141), Expect = 2e-12
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 15 NLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
           L     GL+E+    D  L V G+  QAHK IL+  SP F
Sbjct: 11 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 51

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144

 Score = 56.6 bits (137), Expect = 5e-12
 Identities = 13/55 (23%), Positives = 21/55 (38%)

Query: 1  MPEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
            +  ++      A L        E+    D  L ++G+ I   K IL+  SPY 
Sbjct: 19 YFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI 73

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172

 Score = 55.7 bits (135), Expect = 2e-11
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 15 NLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
           L     GL+E+    D  L V G+  QAHK IL+  SP F
Sbjct: 20 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 60

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138

 Score = 54.6 bits (132), Expect = 3e-11
 Identities = 14/55 (25%), Positives = 29/55 (52%)

Query: 1  MPEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
              ++ + +    N+    +   + + L DV++ VEG+  +AH+ +L+ CS YF
Sbjct: 8  ESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYF 62

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125

 Score = 53.8 bits (130), Expect = 6e-11
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 2  PEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
             Y  +      N+  G +   + + L DV+L VE K  +AH+ +L+ CS YF
Sbjct: 5  SPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYF 58

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124

 Score = 53.4 bits (129), Expect = 6e-11
 Identities = 14/51 (27%), Positives = 29/51 (56%)

Query: 5  YSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          ++ + +    N+    +   + + L DV++ VEG+  +AH+ +L+ CS YF
Sbjct: 5  FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYF 55

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256

 Score = 55.3 bits (134), Expect = 7e-11
 Identities = 15/55 (27%), Positives = 22/55 (40%)

Query: 1  MPEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          M E  ++      A L        E+    D  L ++G+ I   K IL+  SPY 
Sbjct: 3  MAEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI 57

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 53.0 bits (128), Expect = 1e-10
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 5  YSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
            +++    +++    + L   + L DV + V  +  +AHK +L  CS  F
Sbjct: 5  SQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 55

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120

 Score = 51.0 bits (123), Expect = 4e-10
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 7  LKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          + + +  +++ +G +       L DV + VEG+    H+ +L+ CS YF
Sbjct: 3  IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYF 51

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129

 Score = 51.5 bits (124), Expect = 5e-10
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 2  PEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
           +   ++  NF  ++    +         DVS+ V+G   +AH+ +L+  S YF
Sbjct: 6  AQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYF 59

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119

 Score = 50.3 bits (121), Expect = 9e-10
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 6  SLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          S+ +      +    +   E     D +L V G + +AH  +L+ CS +F
Sbjct: 1  SMSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFF 50

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135

 Score = 50.3 bits (121), Expect = 1e-09
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 10 NNFHA-NLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          ++ H+  +    +   E     D +L V G + +AH  +L+ CS +F
Sbjct: 5  SSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFF 51

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score = 49.9 bits (120), Expect = 1e-09
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 23 LFEDEDLVDVSLAV----EGKIIQAHKVILSVCSPYF 55
          +F +E + DV   V      + + AHK +L+V S  F
Sbjct: 2  MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVF 38

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116

 Score = 49.9 bits (120), Expect = 1e-09
 Identities = 10/46 (21%), Positives = 21/46 (45%)

Query: 10 NNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
          ++   +L    +   E   L D ++ +     +AH+ +L+  S YF
Sbjct: 3  SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYF 48

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121

 Score = 49.5 bits (119), Expect = 2e-09
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 5  YSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
            L+  +    L    + +     L DV + V+ +   AH+ +L+  S  F
Sbjct: 4  IQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMF 54

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116

 Score = 49.2 bits (118), Expect = 3e-09
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 1  MPEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
            +  S     +  +L    +         DV++ VE +  +AHK ILS  S YF
Sbjct: 3  SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYF 57

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119

 Score = 49.2 bits (118), Expect = 3e-09
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 11 NFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
              ++    +   +   L D +  V+G   +AHK +L+ CS YF
Sbjct: 9  QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYF 53

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279

 Score = 50.7 bits (122), Expect = 3e-09
 Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2  PEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSL---AVEGKIIQAHKVILSVCSPYF 55
           E    + ++  + L+   +         D++L      G+  +AH+ +L+  + YF
Sbjct: 5  MEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYF 61

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119

 Score = 48.0 bits (115), Expect = 7e-09
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 29 LVDVSLAVEGKIIQAHKVILSVCSPYF 55
          L D  + V  +   AH ++L+  S   
Sbjct: 30 LCDTLITVGSQEFPAHSLVLAGVSQQL 56

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 49.9 bits (119), Expect = 8e-09
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 15  NLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYF 55
            L     GL+E+    D  L V G+  QAHK IL+  SP F
Sbjct: 160 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 200

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	94
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.95
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.94
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.94
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.94
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.94
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.94
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.94
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.94
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.93
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.93
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.93
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.92
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.92
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.92
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.91
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.89
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.89
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.88
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.87
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.85
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.26
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.09
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	98.59
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	98.51
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	98.43
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	98.38
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	97.93
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	97.7
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	97.41
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	95.63
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	93.54
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	92.12
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	89.99
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	89.93
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	88.47

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.95  E-value=5.5e-28  Score=146.17  Aligned_cols=88  Identities=19%  Similarity=0.317  Sum_probs=78.6

Q ss_pred             eeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-ccCCCCHHHHHHhh
Q psy5169           6 SLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-FLSSFAFKIFECLV   84 (94)
Q Consensus         6 ~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-~l~~v~~~~~~~ll   84 (94)
                      .++|++|++.+++.+++++.++.+|||+|.++|+.|+|||+|||++|+||++||.+++.|+.... .++++++++|+.+|
T Consensus         2 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll   81 (120)
T 2if5_A            2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALM   81 (120)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHH
T ss_pred             CcCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999888876655 99999999999999


Q ss_pred             hhhcCCeec
Q psy5169          85 YFWTPCTVK   93 (94)
Q Consensus        85 ~fly~~~v~   93 (94)
                      +|+|||++.
T Consensus        82 ~~~Yt~~~~   90 (120)
T 2if5_A           82 DFAYTATLT   90 (120)
T ss_dssp             HHHHHSCCC
T ss_pred             HHHcCCCCc
Confidence            999999874

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.94  E-value=2.8e-27  Score=144.04  Aligned_cols=91  Identities=23%  Similarity=0.309  Sum_probs=83.4

Q ss_pred             CCeeeeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCC-CCHHHH
Q psy5169           2 PEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSS-FAFKIF   80 (94)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~-v~~~~~   80 (94)
                      +..+.+++++|...+++.+++++.++.+|||+|.++|+.|+|||+|||++|+||++||.+++.+ ...+.+++ +++++|
T Consensus         5 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e-~~~i~l~~~~~~~~f   83 (125)
T 3ohu_A            5 SPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN-DLVVSLPEEVTARGF   83 (125)
T ss_dssp             CCCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS-SCEEECCTTCCHHHH
T ss_pred             CcceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC-CcEEEeCCCCCHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999998776 34458887 999999


Q ss_pred             HHhhhhhcCCeec
Q psy5169          81 ECLVYFWTPCTVK   93 (94)
Q Consensus        81 ~~ll~fly~~~v~   93 (94)
                      +.+|+|+|||++.
T Consensus        84 ~~~l~~iYtg~~~   96 (125)
T 3ohu_A           84 GPLLQFAYTAKLL   96 (125)
T ss_dssp             HHHHHHHTTSEEE
T ss_pred             HHHHHhHcCCceE
Confidence            9999999999874

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.94  E-value=1.7e-27  Score=145.35  Aligned_cols=90  Identities=19%  Similarity=0.281  Sum_probs=83.0

Q ss_pred             eeeeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcccc-CCCCHHHHHH
Q psy5169           4 QYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFL-SSFAFKIFEC   82 (94)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l-~~v~~~~~~~   82 (94)
                      ...++|++|+..+++.+++++.++.+|||+|.++|+.|+|||+|||++|+||++||.+++.|....+.+ +++++++|+.
T Consensus         4 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~   83 (127)
T 1r29_A            4 DSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNI   83 (127)
T ss_dssp             -CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHH
T ss_pred             CccccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999998884455589 9999999999


Q ss_pred             hhhhhcCCeec
Q psy5169          83 LVYFWTPCTVK   93 (94)
Q Consensus        83 ll~fly~~~v~   93 (94)
                      +|+|+|||++.
T Consensus        84 ll~~~Ytg~~~   94 (127)
T 1r29_A           84 LLDFMYTSRLN   94 (127)
T ss_dssp             HHHHHHHSCCC
T ss_pred             HHHHHcCCCcC
Confidence            99999999874

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.94  E-value=3.7e-27  Score=147.16  Aligned_cols=91  Identities=15%  Similarity=0.233  Sum_probs=79.5

Q ss_pred             CeeeeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCC--CCC-ccccCCCCHHH
Q psy5169           3 EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQ--SEN-TNFLSSFAFKI   79 (94)
Q Consensus         3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e--~~~-~~~l~~v~~~~   79 (94)
                      +.+.+++++|+..+++.+++++.++.+|||+|.++|+.|+|||+|||++|+||++||.+++.+  +.. .+.++++++++
T Consensus        21 ~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~  100 (144)
T 2ppi_A           21 QSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMV  100 (144)
T ss_dssp             CCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHH
T ss_pred             eeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHH
Confidence            566889999999999999999999999999999999999999999999999999999987765  333 44899999999


Q ss_pred             HHHhhhhhcCCeec
Q psy5169          80 FECLVYFWTPCTVK   93 (94)
Q Consensus        80 ~~~ll~fly~~~v~   93 (94)
                      |+.+|+|+|||++.
T Consensus       101 f~~lL~fiYtg~~~  114 (144)
T 2ppi_A          101 MREILDYIFSGQIR  114 (144)
T ss_dssp             HHHHHHHHTTSCCC
T ss_pred             HHHHHHHHhCCCCC
Confidence            99999999999874

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.94  E-value=7.2e-27  Score=141.14  Aligned_cols=87  Identities=22%  Similarity=0.227  Sum_probs=80.6

Q ss_pred             CCeeeeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHH
Q psy5169           2 PEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFE   81 (94)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~   81 (94)
                      ++.+.+.+++|+..+++.+++++.++.+|||+|.++|+.|+|||+|||++|+||++||.++    ...+.++++++++|+
T Consensus         4 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~----~~~i~l~~~~~~~f~   79 (116)
T 3fkc_A            4 RKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA----GQVVELSFIRAEIFA   79 (116)
T ss_dssp             CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC----CSEEEECSSCHHHHH
T ss_pred             CceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC----CCEEEeCCCCHHHHH
Confidence            4567888999999999999999999999999999999999999999999999999999875    344588999999999


Q ss_pred             HhhhhhcCCee
Q psy5169          82 CLVYFWTPCTV   92 (94)
Q Consensus        82 ~ll~fly~~~v   92 (94)
                      .+|+|+|||++
T Consensus        80 ~~l~~~Ytg~~   90 (116)
T 3fkc_A           80 EILNYIYSSKI   90 (116)
T ss_dssp             HHHHHHTTSCC
T ss_pred             HHHHhhcCCCc
Confidence            99999999987

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.94  E-value=4.8e-27  Score=143.12  Aligned_cols=90  Identities=22%  Similarity=0.308  Sum_probs=80.5

Q ss_pred             CeeeeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcccc-CCCCHHHHH
Q psy5169           3 EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFL-SSFAFKIFE   81 (94)
Q Consensus         3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l-~~v~~~~~~   81 (94)
                      +.+.++|+.|+..+++.+++++.++.+|||+|.++|+.|+|||+|||++|+||++||.+++.++ ..+.+ +++++++|+
T Consensus         3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~-~~i~l~~~v~~~~f~   81 (124)
T 2ihc_A            3 SVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE-LNITLPEEVTVKGFE   81 (124)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C-EEEECCTTSCHHHHH
T ss_pred             ceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC-ceEeecCCcCHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999987664 34467 589999999


Q ss_pred             HhhhhhcCCeec
Q psy5169          82 CLVYFWTPCTVK   93 (94)
Q Consensus        82 ~ll~fly~~~v~   93 (94)
                      .+|+|+|||++.
T Consensus        82 ~lL~~iYtg~~~   93 (124)
T 2ihc_A           82 PLIQFAYTAKLI   93 (124)
T ss_dssp             HHHHHHHHSEEE
T ss_pred             HHHHHhcCCCcc
Confidence            999999999874

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.94  E-value=1.5e-27  Score=144.44  Aligned_cols=85  Identities=20%  Similarity=0.287  Sum_probs=78.0

Q ss_pred             eeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhhh
Q psy5169           6 SLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVY   85 (94)
Q Consensus         6 ~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~   85 (94)
                      +++|++|+..+++.+++++.++.+|||+|.++|+.|+|||+|||++|+||++||.+++   ...+.++++++++|+.+|+
T Consensus         1 s~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~---~~~i~l~~~~~~~f~~ll~   77 (119)
T 3b84_A            1 SMSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS---GGSVVLPAGFAEIFGLLLD   77 (119)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT---CCCEEECGGGHHHHHHHHH
T ss_pred             CcccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC---CCeEEeCCCCHHHHHHHHH
Confidence            3578899999999999999999999999999999999999999999999999999865   3456889999999999999


Q ss_pred             hhcCCeec
Q psy5169          86 FWTPCTVK   93 (94)
Q Consensus        86 fly~~~v~   93 (94)
                      |+|||++.
T Consensus        78 ~iYtg~~~   85 (119)
T 3b84_A           78 FFYTGHLA   85 (119)
T ss_dssp             HHHHSCCC
T ss_pred             HHcCCCCc
Confidence            99999874

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.94  E-value=7e-27  Score=143.16  Aligned_cols=90  Identities=18%  Similarity=0.245  Sum_probs=81.6

Q ss_pred             CCCeeeeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccC-CCCHHH
Q psy5169           1 MPEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLS-SFAFKI   79 (94)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~-~v~~~~   79 (94)
                      +.+.+.++|++|...+++.+++++.++.+|||+|.++|+.|+|||+|||++|+||++||.++   ....+.++ ++++++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~---~~~~i~l~~~~~~~~   81 (129)
T 3ga1_A            5 SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS---RSAVVELPAAVQPQS   81 (129)
T ss_dssp             --CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC---CCSEEECCTTCCHHH
T ss_pred             CCceEEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC---CCCEEEECCCCCHHH
Confidence            35788999999999999999999999999999999999999999999999999999999876   33445886 999999


Q ss_pred             HHHhhhhhcCCeec
Q psy5169          80 FECLVYFWTPCTVK   93 (94)
Q Consensus        80 ~~~ll~fly~~~v~   93 (94)
                      |+.+|+|+|||++.
T Consensus        82 f~~ll~~iYtg~~~   95 (129)
T 3ga1_A           82 FQQILSFCYTGRLS   95 (129)
T ss_dssp             HHHHHHHHHHSEEE
T ss_pred             HHHHHHHHhCCccc
Confidence            99999999999875

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.93  E-value=1e-26  Score=143.94  Aligned_cols=90  Identities=23%  Similarity=0.320  Sum_probs=82.1

Q ss_pred             CeeeeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcccc-CCCCHHHHH
Q psy5169           3 EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFL-SSFAFKIFE   81 (94)
Q Consensus         3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l-~~v~~~~~~   81 (94)
                      ..+.++|+.|+..+++.+++++.++.+|||+|.++|+.|+|||+|||++|+||++||.+++.+. ..+.+ .++++++|+
T Consensus        10 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~-~~i~l~~~v~~~~~~   88 (138)
T 2z8h_A           10 AVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE-LTVTLPEEVTVKGFE   88 (138)
T ss_dssp             CCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT-EEEECCTTSCHHHHH
T ss_pred             CeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC-ceEEeCCCCCHHHHH
Confidence            4578899999999999999999999999999999999999999999999999999999987663 34577 489999999


Q ss_pred             HhhhhhcCCeec
Q psy5169          82 CLVYFWTPCTVK   93 (94)
Q Consensus        82 ~ll~fly~~~v~   93 (94)
                      .+|+|+|||++.
T Consensus        89 ~lL~~~Ytg~~~  100 (138)
T 2z8h_A           89 PLIQFAYTAKLI  100 (138)
T ss_dssp             HHHHHHHHSCCC
T ss_pred             HHHHHhcCCCcc
Confidence            999999999874

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.93  E-value=1.1e-26  Score=140.90  Aligned_cols=86  Identities=17%  Similarity=0.195  Sum_probs=79.6

Q ss_pred             eeeeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHh
Q psy5169           4 QYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECL   83 (94)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~l   83 (94)
                      .+.+++++|++.+++.+++++.++.+|||+|.++|+.|+|||+|||++|+||++||.++    ...+.++++++++|+.+
T Consensus         3 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~----~~~i~l~~~~~~~f~~l   78 (121)
T 1buo_A            3 MIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN----SQHYTLDFLSPKTFQQI   78 (121)
T ss_dssp             CCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC----CSEEEECSSCHHHHHHH
T ss_pred             ceeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC----CcEEEeCCCCHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999874    23458899999999999


Q ss_pred             hhhhcCCeec
Q psy5169          84 VYFWTPCTVK   93 (94)
Q Consensus        84 l~fly~~~v~   93 (94)
                      |+|+|||++.
T Consensus        79 l~~~Ytg~~~   88 (121)
T 1buo_A           79 LEYAYTATLQ   88 (121)
T ss_dssp             HHHHHHSCCC
T ss_pred             HHhhcCCCcC
Confidence            9999999874

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.93  E-value=4.8e-26  Score=140.59  Aligned_cols=83  Identities=19%  Similarity=0.268  Sum_probs=72.4

Q ss_pred             eeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhhhhh
Q psy5169           8 KWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFW   87 (94)
Q Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~fl   87 (94)
                      .+.+|...+++.+++++.++.+|||+|.++|+.|+|||+|||++|+||++||.+++   ...+.++++++++|+.+|+|+
T Consensus         4 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~---~~~i~l~~~~~~~f~~lL~fi   80 (135)
T 2yy9_A            4 GSSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT---GGSVVLPAGFAEIFGLLLDFF   80 (135)
T ss_dssp             ---CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC-------CCEEECGGGHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC---CCeEEeCCCCHHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999999999999876   344688999999999999999


Q ss_pred             cCCeec
Q psy5169          88 TPCTVK   93 (94)
Q Consensus        88 y~~~v~   93 (94)
                      |||++.
T Consensus        81 Ytg~~~   86 (135)
T 2yy9_A           81 YTGHLA   86 (135)
T ss_dssp             HHSCCC
T ss_pred             hCCCCC
Confidence            999874

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.92  E-value=1.1e-25  Score=150.83  Aligned_cols=93  Identities=17%  Similarity=0.231  Sum_probs=72.1

Q ss_pred             CCCeeeeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCC--CCCCc-cccCCCCH
Q psy5169           1 MPEQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLG--QSENT-NFLSSFAF   77 (94)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~--e~~~~-~~l~~v~~   77 (94)
                      |+....+.+++|+..+++.+++++.++.+|||+|.+||+.|+|||+|||++|+||++||.+++.  ++... +.++++++
T Consensus         3 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~   82 (256)
T 3hve_A            3 MAEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISV   82 (256)
T ss_dssp             -------CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCH
T ss_pred             CCCCCccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCH
Confidence            6778889999999999999999999999999999999999999999999999999999998876  34433 49999999


Q ss_pred             HHHHHhhhhhcCCeec
Q psy5169          78 KIFECLVYFWTPCTVK   93 (94)
Q Consensus        78 ~~~~~ll~fly~~~v~   93 (94)
                      ++|+.+|+|+|||++.
T Consensus        83 ~~f~~ll~~~Yt~~~~   98 (256)
T 3hve_A           83 MVMREILDYIFSGQIR   98 (256)
T ss_dssp             HHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHhhccCCCCc
Confidence            9999999999999874

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.92  E-value=6.8e-26  Score=136.34  Aligned_cols=82  Identities=23%  Similarity=0.246  Sum_probs=73.7

Q ss_pred             eCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccC--CCCHHHHHHhhhh
Q psy5169           9 WNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLS--SFAFKIFECLVYF   86 (94)
Q Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~--~v~~~~~~~ll~f   86 (94)
                      .++|+..+++.+++++.++.+|||+|.++|+.|+|||+|||++|+||++||.++   +...+.++  ++++++|+.+|+|
T Consensus         2 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~---~~~~i~l~~~~~~~~~f~~ll~~   78 (116)
T 2vpk_A            2 MSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST---SENNVFLDQSQVKADGFQKLLEF   78 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC---CCSCEECCTTTCCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC---CCCeEEeecCCCCHHHHHHHHHH
Confidence            346889999999999999999999999999999999999999999999999886   23344566  9999999999999


Q ss_pred             hcCCeec
Q psy5169          87 WTPCTVK   93 (94)
Q Consensus        87 ly~~~v~   93 (94)
                      +|||++.
T Consensus        79 ~Yt~~~~   85 (116)
T 2vpk_A           79 IYTGTLN   85 (116)
T ss_dssp             HHHSCCC
T ss_pred             HcCCCcc
Confidence            9999874

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.92  E-value=5.2e-26  Score=137.64  Aligned_cols=85  Identities=16%  Similarity=0.219  Sum_probs=76.1

Q ss_pred             eeeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhh
Q psy5169           5 YSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLV   84 (94)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll   84 (94)
                      ..+++++|...+++.+++++.++.+|||+|.++|+.|+|||+|||++|+||++||.++    ...+.++++++++|+.+|
T Consensus         3 ~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~i~l~~~~~~~f~~ll   78 (119)
T 2q81_A            3 LGSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ----KDVVHLDISNAAGLGQVL   78 (119)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC----CSGGGGGGCCHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC----CCEEEeCCCCHHHHHHHH
Confidence            3566788999999999999999999999999999999999999999999999999862    234588899999999999


Q ss_pred             hhhcCCeec
Q psy5169          85 YFWTPCTVK   93 (94)
Q Consensus        85 ~fly~~~v~   93 (94)
                      +|+|||++.
T Consensus        79 ~~~Ytg~~~   87 (119)
T 2q81_A           79 EFMYTAKLS   87 (119)
T ss_dssp             HHHHHSCCC
T ss_pred             HHHcCCCCc
Confidence            999999874

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.91  E-value=8.9e-25  Score=148.12  Aligned_cols=91  Identities=13%  Similarity=0.227  Sum_probs=77.4

Q ss_pred             CeeeeeeCCchHHHHHHHHhhhhCCCceeEEEEEC---CeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-ccC-----
Q psy5169           3 EQYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVE---GKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-FLS-----   73 (94)
Q Consensus         3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~---~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-~l~-----   73 (94)
                      +...+.+++|+..+++.+++++.++.+|||+|.+|   |+.|+|||+|||++|+||++||.+++.|+.... .++     
T Consensus         6 ~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~   85 (279)
T 3i3n_A            6 EAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSE   85 (279)
T ss_dssp             CEEEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSST
T ss_pred             cccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEecccccc
Confidence            45778999999999999999999999999999998   999999999999999999999999988877655 787     


Q ss_pred             -CCCHHHHHHhhhhhcCCeec
Q psy5169          74 -SFAFKIFECLVYFWTPCTVK   93 (94)
Q Consensus        74 -~v~~~~~~~ll~fly~~~v~   93 (94)
                       ++++++|+.+|+|+|||++.
T Consensus        86 ~~v~~~~f~~ll~~~Ytg~~~  106 (279)
T 3i3n_A           86 PGPEPDTVEAVIEYMYTGRIR  106 (279)
T ss_dssp             TCSCHHHHHHHHHHHHHSEEE
T ss_pred             CCCCHHHHHHHHHhhCcCCcc
Confidence             89999999999999999874

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.89  E-value=3.6e-24  Score=127.22  Aligned_cols=72  Identities=21%  Similarity=0.296  Sum_probs=60.9

Q ss_pred             hhhhCCCceeEEEEECC----eEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhhhhhcCCeec
Q psy5169          22 GLFEDEDLVDVSLAVEG----KIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTPCTVK   93 (94)
Q Consensus        22 ~~~~~~~~~Dv~l~~~~----~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~fly~~~v~   93 (94)
                      +++.++.+|||+|.++|    +.|+|||.|||++|+||++||.+++.|+...+.++++++++|+.+|+|+|||++.
T Consensus         1 ~l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~~   76 (109)
T 2vkp_A            1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDEID   76 (109)
T ss_dssp             CCTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCCCC
T ss_pred             CcccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCCcc
Confidence            36889999999999988    8999999999999999999999999888744599999999999999999999874

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.89  E-value=4.9e-24  Score=135.05  Aligned_cols=85  Identities=24%  Similarity=0.354  Sum_probs=77.4

Q ss_pred             eCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-ccCCCCHHHHHHhhhhh
Q psy5169           9 WNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-FLSSFAFKIFECLVYFW   87 (94)
Q Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-~l~~v~~~~~~~ll~fl   87 (94)
                      +...++.+...+++++.++.+|||+|.++|+.|+|||.||+++|+||++||.+++.++.... .++++++++|+.+|+|+
T Consensus        14 ~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~   93 (172)
T 3htm_A           14 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFI   93 (172)
T ss_dssp             SCCCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHH
Confidence            34456678999999999999999999999999999999999999999999999888876655 99999999999999999


Q ss_pred             cCCeec
Q psy5169          88 TPCTVK   93 (94)
Q Consensus        88 y~~~v~   93 (94)
                      ||+.+.
T Consensus        94 Yt~~~~   99 (172)
T 3htm_A           94 YTGKAP   99 (172)
T ss_dssp             HHSCCT
T ss_pred             hCCCCC
Confidence            999864

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.88  E-value=3.1e-24  Score=132.72  Aligned_cols=82  Identities=24%  Similarity=0.383  Sum_probs=74.5

Q ss_pred             chHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-ccCCCCHHHHHHhhhhhcCC
Q psy5169          12 FHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-FLSSFAFKIFECLVYFWTPC   90 (94)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-~l~~v~~~~~~~ll~fly~~   90 (94)
                      .++.+.+.+++++.++.+|||+|.++|+.|+|||.||+++|+||++||.+++.++.... .++++++++|+.+|+|+|||
T Consensus         8 p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~   87 (145)
T 4eoz_A            8 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTG   87 (145)
T ss_dssp             CCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccC
Confidence            34578899999999999999999999999999999999999999999999877665444 89999999999999999999


Q ss_pred             eec
Q psy5169          91 TVK   93 (94)
Q Consensus        91 ~v~   93 (94)
                      ++.
T Consensus        88 ~~~   90 (145)
T 4eoz_A           88 KAP   90 (145)
T ss_dssp             CCT
T ss_pred             ccC
Confidence            874

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.87  E-value=1.4e-22  Score=122.90  Aligned_cols=79  Identities=16%  Similarity=0.062  Sum_probs=67.5

Q ss_pred             eeeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhh
Q psy5169           5 YSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLV   84 (94)
Q Consensus         5 ~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll   84 (94)
                      .....+.+...+++.++  |.++.+|||+|.++|+.|+|||+|||++|+||++        ....+.++++++++|+.+|
T Consensus         8 ~~~~~~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~--------~~~~i~l~~v~~~~f~~ll   77 (119)
T 3m5b_A            8 IRLPSPYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR--------RGQWALGEGISPSTFAQLL   77 (119)
T ss_dssp             EEECCTTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC--------CEEEECCSSCCHHHHHHHH
T ss_pred             CCCCCCcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc--------CCCEEEeCCCCHHHHHHHH
Confidence            34455567778888886  7789999999999999999999999999999985        1234589999999999999


Q ss_pred             hhhcCCeec
Q psy5169          85 YFWTPCTVK   93 (94)
Q Consensus        85 ~fly~~~v~   93 (94)
                      +|+|||++.
T Consensus        78 ~fiYtg~~~   86 (119)
T 3m5b_A           78 NFVYGESVE   86 (119)
T ss_dssp             HHHTTCCEE
T ss_pred             HHHcCCCcC
Confidence            999999874

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.85  E-value=8.2e-22  Score=135.11  Aligned_cols=81  Identities=25%  Similarity=0.404  Sum_probs=70.6

Q ss_pred             hHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-ccCCCCHHHHHHhhhhhcCCe
Q psy5169          13 HANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-FLSSFAFKIFECLVYFWTPCT   91 (94)
Q Consensus        13 ~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-~l~~v~~~~~~~ll~fly~~~   91 (94)
                      ++.+.+.+.+++.++.+|||+|.++|++|+|||+|||++|+||++||.+++.|+.... .++++++++|+.+|+|+||++
T Consensus       158 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~  237 (312)
T 3hqi_A          158 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK  237 (312)
T ss_dssp             CCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSC
T ss_pred             CchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCC
Confidence            3468899999999999999999999999999999999999999999999988877665 999999999999999999997


Q ss_pred             ec
Q psy5169          92 VK   93 (94)
Q Consensus        92 v~   93 (94)
                      +.
T Consensus       238 ~~  239 (312)
T 3hqi_A          238 AP  239 (312)
T ss_dssp             CT
T ss_pred             CC
Confidence            64

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.26  E-value=6.6e-12  Score=73.35  Aligned_cols=56  Identities=11%  Similarity=0.176  Sum_probs=44.3

Q ss_pred             EEEEE-CCeEEEhhHHHHhhcCHHHHhcCCC--CCCCCCCc-cccCCCCHHHHHHhhhhhc
Q psy5169          32 VSLAV-EGKIIQAHKVILSVCSPYFIKCPPK--KLGQSENT-NFLSSFAFKIFECLVYFWT   88 (94)
Q Consensus        32 v~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~--~~~e~~~~-~~l~~v~~~~~~~ll~fly   88 (94)
                      |+|+. +|++|++||.+ |++|+||++||.+  ++.|+... ++|++|++.+++.+++|+|
T Consensus         4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~   63 (97)
T 4ajy_C            4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT   63 (97)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHH
Confidence            56665 88999999999 9999999999987  45554444 4999999999999999999

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=98.59  E-value=8.3e-08  Score=56.07  Aligned_cols=57  Identities=19%  Similarity=0.189  Sum_probs=47.2

Q ss_pred             EEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhhhhhcC
Q psy5169          32 VSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTP   89 (94)
Q Consensus        32 v~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~fly~   89 (94)
                      |+|+. +|+.|.+++.+ |.+|.++++|+..+.......++|++|+..+++.+++|++.
T Consensus         6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~   63 (99)
T 1hv2_A            6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNY   63 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHH
Confidence            67766 89999999997 88999999999875522224459999999999999999863

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=98.51  E-value=7.7e-08  Score=59.43  Aligned_cols=55  Identities=15%  Similarity=0.099  Sum_probs=46.7

Q ss_pred             EEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhhhhhcCC
Q psy5169          32 VSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTPC   90 (94)
Q Consensus        32 v~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~fly~~   90 (94)
                      |+|+. +|+.|.+|+.+ |.+|.++++|+....   ...+++++|+..+++.+++|+|..
T Consensus         4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~Ipl~~V~~~iL~kVieyc~~h   59 (141)
T 1fs1_B            4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG---MDPVPLPNVNAAILKKVIQWCTHH   59 (141)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC---CSSEECTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC---CCceecCCcCHHHHHHHHHHHHHh
Confidence            67776 88999999998 889999999997632   345699999999999999999753

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=98.43  E-value=2.1e-07  Score=54.07  Aligned_cols=57  Identities=12%  Similarity=0.159  Sum_probs=44.5

Q ss_pred             EEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCC--CCCCC-CccccCCCCHHHHHHhhhhhcC
Q psy5169          32 VSLAV-EGKIIQAHKVILSVCSPYFIKCPPKK--LGQSE-NTNFLSSFAFKIFECLVYFWTP   89 (94)
Q Consensus        32 v~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~--~~e~~-~~~~l~~v~~~~~~~ll~fly~   89 (94)
                      |+++. +|..|.+++.+ |..|.++++|+...  ..|+. ..++|++|+..+++.+++|++.
T Consensus         3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~   63 (96)
T 2fnj_C            3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTY   63 (96)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHH
Confidence            56665 89999999997 88999999999752  23333 3459999999999999999863

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=98.38  E-value=5.7e-08  Score=61.19  Aligned_cols=57  Identities=12%  Similarity=0.179  Sum_probs=28.0

Q ss_pred             EEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhhhhhcCCe
Q psy5169          32 VSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTPCT   91 (94)
Q Consensus        32 v~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~fly~~~   91 (94)
                      |+|+. +|+.|.+|+.+ |.+|+++++||....  ....++|++|+..+|+.+++|+|...
T Consensus         6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~--~~~~Ipl~~V~~~iL~kVieyc~~h~   63 (160)
T 2p1m_A            6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC--VDNGVPLPNVTSKILAKVIEYCKRHV   63 (160)
T ss_dssp             --CCC---------CHH-HHTCTTTC--------------CCTTSCHHHHHHHHHC-----
T ss_pred             EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC--CCCceeCCcCcHHHHHHHHHHHHHcc
Confidence            56664 89999999998 889999999998643  23356999999999999999998754

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=97.93  E-value=1.8e-05  Score=47.03  Aligned_cols=57  Identities=12%  Similarity=0.160  Sum_probs=43.9

Q ss_pred             eEEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCC--CCCCC-CccccCCCCHHHHHHhhhhhc
Q psy5169          31 DVSLAV-EGKIIQAHKVILSVCSPYFIKCPPKK--LGQSE-NTNFLSSFAFKIFECLVYFWT   88 (94)
Q Consensus        31 Dv~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~--~~e~~-~~~~l~~v~~~~~~~ll~fly   88 (94)
                      -|+|+. +|..|.+.+.+ |..|..++.|+...  +.+.. ..++|++|+..+|+.+++|++
T Consensus        18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~   78 (112)
T 1vcb_B           18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT   78 (112)
T ss_dssp             EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHH
Confidence            366764 88999999995 77899999999853  22332 345999999999999999985

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=97.70  E-value=3.9e-05  Score=48.58  Aligned_cols=57  Identities=14%  Similarity=0.088  Sum_probs=43.9

Q ss_pred             eEEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCC----C-CCccccCCCCHHHHHHhhhhhc
Q psy5169          31 DVSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQ----S-ENTNFLSSFAFKIFECLVYFWT   88 (94)
Q Consensus        31 Dv~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e----~-~~~~~l~~v~~~~~~~ll~fly   88 (94)
                      -|+|+. +|..|.+++.+ |..|..++.|+.....+    . ...++|++|+..+|+.+++|++
T Consensus         8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~   70 (169)
T 3v7d_A            8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAE   70 (169)
T ss_dssp             EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHH
Confidence            466765 88999999998 77899999999753321    1 1445899999999999999974

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=97.41  E-value=0.00016  Score=42.45  Aligned_cols=62  Identities=13%  Similarity=0.157  Sum_probs=46.7

Q ss_pred             EEEEECCeEEEhhHHHHhhcC-HHHHhcCCCCCC----CCCCccccCCCCHHHHHHhhhhhcCCeec
Q psy5169          32 VSLAVEGKIIQAHKVILSVCS-PYFIKCPPKKLG----QSENTNFLSSFAFKIFECLVYFWTPCTVK   93 (94)
Q Consensus        32 v~l~~~~~~~~~Hk~vLa~~S-~yF~~~f~~~~~----e~~~~~~l~~v~~~~~~~ll~fly~~~v~   93 (94)
                      |.|.|||+.|...+..|+... .+|.+||.+...    ........-|-+|..|+.+|+|+.+|.+.
T Consensus         8 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~   74 (107)
T 3drz_A            8 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLV   74 (107)
T ss_dssp             EEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCC
T ss_pred             EEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEecCChHHHHHHHHHhCCCeeC
Confidence            677899999999999999875 478888876421    11122233368999999999999988763

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=95.63  E-value=0.0064  Score=36.06  Aligned_cols=62  Identities=11%  Similarity=0.154  Sum_probs=43.8

Q ss_pred             EEEEECCeEEEhhHHHHhhcCH-HHHhcCCCCCC-CCCCccccCCCCHHHHHHhhhhhcCCeec
Q psy5169          32 VSLAVEGKIIQAHKVILSVCSP-YFIKCPPKKLG-QSENTNFLSSFAFKIFECLVYFWTPCTVK   93 (94)
Q Consensus        32 v~l~~~~~~~~~Hk~vLa~~S~-yF~~~f~~~~~-e~~~~~~l~~v~~~~~~~ll~fly~~~v~   93 (94)
                      |+|.|||..|...+..|+.... .+.+|+..... ........-|-++..|+.+|+|+-+|++.
T Consensus         7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiDRdp~~F~~ILnylR~G~l~   70 (115)
T 3kvt_A            7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLH   70 (115)
T ss_dssp             EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHHHSCBC
T ss_pred             EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEecChHHHHHHHHHhcCCCCC
Confidence            6788999999999999987643 45666654321 11122233358999999999999888763

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=93.54  E-value=0.025  Score=36.73  Aligned_cols=67  Identities=12%  Similarity=0.151  Sum_probs=46.9

Q ss_pred             CCcee-EEEEECCeEEEhhHHHHhhcC-HHHHhcCCCCCC----CCCCccccCCCCHHHHHHhhhhhcCCeec
Q psy5169          27 EDLVD-VSLAVEGKIIQAHKVILSVCS-PYFIKCPPKKLG----QSENTNFLSSFAFKIFECLVYFWTPCTVK   93 (94)
Q Consensus        27 ~~~~D-v~l~~~~~~~~~Hk~vLa~~S-~yF~~~f~~~~~----e~~~~~~l~~v~~~~~~~ll~fly~~~v~   93 (94)
                      |...+ |.|.|||..|...+..|+... .+|.+||.+...    ........-|-+|..|+.+|+|+-+|.+.
T Consensus         8 g~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~L~   80 (202)
T 3drx_A            8 GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLV   80 (202)
T ss_dssp             SCCCCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEECSCSTTHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEecCChHHHHHHHHHhcCCccC
Confidence            33444 566799999999999998764 377888875421    11122233368999999999999888763

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=92.12  E-value=0.14  Score=30.52  Aligned_cols=60  Identities=13%  Similarity=0.261  Sum_probs=40.4

Q ss_pred             eEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCC----CCCCccccCCCCHHHHHHhhhhhcCCeec
Q psy5169          31 DVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLG----QSENTNFLSSFAFKIFECLVYFWTPCTVK   93 (94)
Q Consensus        31 Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~----e~~~~~~l~~v~~~~~~~ll~fly~~~v~   93 (94)
                      =|.|.|||..|..-+..|+..-   ..+|.....    ........-|=++..|+.+|+|+-+|.+.
T Consensus        14 ~V~LNVGG~~F~t~~~TL~~~p---~S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~l~   77 (124)
T 1s1g_A           14 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLH   77 (124)
T ss_dssp             EEEEEETTEEEEEEHHHHTTST---TSSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSCBC
T ss_pred             EEEEEeCCEEEEEeHHHHhcCC---CceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhcCCCC
Confidence            3677899999999999998643   234433110    11122233357999999999999888763

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=89.99  E-value=0.057  Score=31.12  Aligned_cols=62  Identities=11%  Similarity=0.201  Sum_probs=38.7

Q ss_pred             EEEEECCeEEEhhHHHHhhcCH-HHHhcCCCCC-CCCCCccccCCCCHHHHHHhhhhhcC-Ceec
Q psy5169          32 VSLAVEGKIIQAHKVILSVCSP-YFIKCPPKKL-GQSENTNFLSSFAFKIFECLVYFWTP-CTVK   93 (94)
Q Consensus        32 v~l~~~~~~~~~Hk~vLa~~S~-yF~~~f~~~~-~e~~~~~~l~~v~~~~~~~ll~fly~-~~v~   93 (94)
                      |+|.|||..|...+..|+..-. .+.+|+.... .........=|=++..|+.+|+|+-+ |++.
T Consensus         3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFiDRdp~~F~~ILnflR~~G~l~   67 (100)
T 1t1d_A            3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLR   67 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEECSCSTTHHHHHHHHHTTSCCC
T ss_pred             EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEEcCChHHHHHHHHHHhcCCccc
Confidence            6788999999999999975421 1222221100 00112222336799999999999987 7653

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=89.93  E-value=0.22  Score=30.37  Aligned_cols=60  Identities=13%  Similarity=0.261  Sum_probs=40.6

Q ss_pred             eEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCC----CCCCccccCCCCHHHHHHhhhhhcCCeec
Q psy5169          31 DVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLG----QSENTNFLSSFAFKIFECLVYFWTPCTVK   93 (94)
Q Consensus        31 Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~----e~~~~~~l~~v~~~~~~~ll~fly~~~v~   93 (94)
                      =|+|.|||..|...+..|...-   ..+|.....    ........-|=++..|+.+|+|+-+|.+.
T Consensus        36 ~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~l~   99 (140)
T 2nz0_B           36 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLH   99 (140)
T ss_dssp             EEEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSSBC
T ss_pred             EEEEEECCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCCcC
Confidence            4677899999999999998643   334443111    01122233357999999999999888763

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=88.47  E-value=0.091  Score=30.43  Aligned_cols=59  Identities=15%  Similarity=0.209  Sum_probs=39.9

Q ss_pred             EEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCC----CCCccccCCCCHHHHHHhhhhhcCCeec
Q psy5169          32 VSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQ----SENTNFLSSFAFKIFECLVYFWTPCTVK   93 (94)
Q Consensus        32 v~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e----~~~~~~l~~v~~~~~~~ll~fly~~~v~   93 (94)
                      |.|.|||..|...+..|+....   .+|......    .......-|=++..|+.+|+|+-+|.+.
T Consensus         2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~g~l~   64 (105)
T 1nn7_A            2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLH   64 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSCBC
T ss_pred             EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEEeCCcHHHHHHHHHHhcCCCC
Confidence            6788999999999999986432   344431110    0112222357999999999999888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	94
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	2e-09
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	8e-09

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 2e-09
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 7  LKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLG-Q 65
          +++    +++    + L   + L DV + V  +  +AHK +L  CS  F      +L   
Sbjct: 3  IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN 62

Query: 66 SENTNFLSSFAFKIFECLVYF 86
              N       + F  L+ F
Sbjct: 63 LSVINLDPEINPEGFNILLDF 83

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 8e-09
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 5  YSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLG 64
            L+  +    L    + +     L DV + V+ +   AH+ +L+  S  F +    +  
Sbjct: 4  IQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMF-EILFHRNS 62

Query: 65 QSENTNFLSSFAFKIFECLVYFWT 88
          Q    +FLS   F+      Y  T
Sbjct: 63 QHYTLDFLSPKTFQQILEYAYTAT 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	94
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.95
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.94
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	98.11
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	97.79
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	97.22
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	97.18
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	97.15
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	96.42
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	95.62

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.5e-28  Score=146.68  Aligned_cols=88  Identities=18%  Similarity=0.280  Sum_probs=82.4

Q ss_pred             eeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCcc-ccCCCCHHHHHHhh
Q psy5169           6 SLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTN-FLSSFAFKIFECLV   84 (94)
Q Consensus         6 ~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~-~l~~v~~~~~~~ll   84 (94)
                      .++|++|+.++++.|+++|.++.+||++|.++|++|+|||+|||++|+||++||.+++.++...+ .++++++++|+.+|
T Consensus         2 ~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll   81 (122)
T d1r29a_           2 QIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILL   81 (122)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHH
T ss_pred             CcccchHHHHHHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999988887766 66899999999999


Q ss_pred             hhhcCCeec
Q psy5169          85 YFWTPCTVK   93 (94)
Q Consensus        85 ~fly~~~v~   93 (94)
                      +|+|||++.
T Consensus        82 ~~~Ytg~~~   90 (122)
T d1r29a_          82 DFMYTSRLN   90 (122)
T ss_dssp             HHHHHSCCC
T ss_pred             hhhcCCeec
Confidence            999999864

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.4e-28  Score=145.97  Aligned_cols=86  Identities=17%  Similarity=0.186  Sum_probs=79.7

Q ss_pred             eeeeeeCCchHHHHHHHHhhhhCCCceeEEEEECCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHh
Q psy5169           4 QYSLKWNNFHANLTTGFHGLFEDEDLVDVSLAVEGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECL   83 (94)
Q Consensus         4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~~~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~l   83 (94)
                      .+.+++++|++.+++.++++|.++.+||++|.++|++|+|||+|||++|+||++||.++.    ..+.++++++++|+.+
T Consensus         3 ~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~~----~~i~~~~v~~~~f~~l   78 (121)
T d1buoa_           3 MIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNS----QHYTLDFLSPKTFQQI   78 (121)
T ss_dssp             CCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCC----SEEEECSSCHHHHHHH
T ss_pred             eEEEcCCchHHHHHHHHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCcc----ceeecCCCCHHHHHHH
Confidence            568899999999999999999999999999999999999999999999999999997643    2358899999999999


Q ss_pred             hhhhcCCeec
Q psy5169          84 VYFWTPCTVK   93 (94)
Q Consensus        84 l~fly~~~v~   93 (94)
                      |+|+|||++.
T Consensus        79 l~~~Ytg~i~   88 (121)
T d1buoa_          79 LEYAYTATLQ   88 (121)
T ss_dssp             HHHHHHSCCC
T ss_pred             HHheEccccC
Confidence            9999999875

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=2.7e-06  Score=48.16  Aligned_cols=56  Identities=20%  Similarity=0.211  Sum_probs=47.8

Q ss_pred             EEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhhhhhc
Q psy5169          32 VSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWT   88 (94)
Q Consensus        32 v~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~fly   88 (94)
                      |+|+. +|..|.+.+.+ |..|..++.|+.....++...+++++|+..+++.+++|++
T Consensus         6 v~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~e~~~~Ipl~~V~s~iL~kViey~~   62 (99)
T d1hv2a_           6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLN   62 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEeeHHH-HHHhHHHHHHHHccCCCCcCccccCCCChHHHHHHHHHHH
Confidence            56665 78899999999 6689999999987766666667999999999999999984

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=2.1e-05  Score=44.06  Aligned_cols=56  Identities=13%  Similarity=0.142  Sum_probs=39.9

Q ss_pred             EEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCC--CCCC-CccccCCCCHHHHHHhhhhhc
Q psy5169          32 VSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKL--GQSE-NTNFLSSFAFKIFECLVYFWT   88 (94)
Q Consensus        32 v~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~--~e~~-~~~~l~~v~~~~~~~ll~fly   88 (94)
                      |+|+. +|..|.+.+.+ |..|..++.|+....  .++. ..++|++|+..+|+.+++|++
T Consensus         3 i~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~   62 (96)
T d2c9wc1           3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT   62 (96)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHC------------CEEECTTCCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHH
Confidence            45554 78899999999 777999999996532  3333 345999999999999999983

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.0002  Score=36.79  Aligned_cols=53  Identities=15%  Similarity=0.117  Sum_probs=41.9

Q ss_pred             EEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCCCCCccccCCCCHHHHHHhhhhhc
Q psy5169          32 VSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWT   88 (94)
Q Consensus        32 v~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~fly   88 (94)
                      |+|+. +|..|.+-+.+ |..|...+.|+....   ...+++++|+..+|+.+++|++
T Consensus         3 I~L~SsDg~~f~v~~~~-a~~S~tI~~ml~~~~---~~~Ipl~~V~s~iL~kVieyc~   56 (61)
T d1fs1b2           3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG---MDPVPLPNVNAAILKKVIQWCT   56 (61)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC---CSSEECTTCCHHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEecHHH-HHHhHHHHHHHhcCC---CCCcccCCcCHHHHHHHHHHHH
Confidence            45654 78899998884 566899999997532   2346899999999999999974

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=97.18  E-value=8.9e-05  Score=41.95  Aligned_cols=62  Identities=11%  Similarity=0.147  Sum_probs=45.2

Q ss_pred             EEEEECCeEEEhhHHHHhhcC-HHHHhcCCCCCCCCC-CccccCCCCHHHHHHhhhhhcCCeec
Q psy5169          32 VSLAVEGKIIQAHKVILSVCS-PYFIKCPPKKLGQSE-NTNFLSSFAFKIFECLVYFWTPCTVK   93 (94)
Q Consensus        32 v~l~~~~~~~~~Hk~vLa~~S-~yF~~~f~~~~~e~~-~~~~l~~v~~~~~~~ll~fly~~~v~   93 (94)
                      |+|-|||+.|...+..|.... .++..++........ .....=|=+|..|+.+|+|+-+|++.
T Consensus         4 I~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylR~g~l~   67 (103)
T d3kvta_           4 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLH   67 (103)
T ss_dssp             EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHHHSCBC
T ss_pred             EEEEECCEEEEEeHHHHhhCccchhHHHHcCCCccCCCCCcEEecCCHHHHHHHHHHHccCCcc
Confidence            678899999999999998754 366666665432222 22233368999999999999988764

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.00055  Score=36.11  Aligned_cols=56  Identities=14%  Similarity=0.076  Sum_probs=39.9

Q ss_pred             EEEEE-CCeEEEhhHHHHhhcCHHHHhcCCCCCCCC-----CCccccCCCCHHHHHHhhhhhc
Q psy5169          32 VSLAV-EGKIIQAHKVILSVCSPYFIKCPPKKLGQS-----ENTNFLSSFAFKIFECLVYFWT   88 (94)
Q Consensus        32 v~l~~-~~~~~~~Hk~vLa~~S~yF~~~f~~~~~e~-----~~~~~l~~v~~~~~~~ll~fly   88 (94)
                      |+|+. +|..|.+-+.+ |..|...+.|+.....++     ...+.+++|+..+|+.+++|++
T Consensus         3 I~L~SsDg~~F~v~~~~-a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~   64 (72)
T d1nexa2           3 VVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAE   64 (72)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHTC-------------CEEECTTCCHHHHHHHHHHHH
T ss_pred             eEEEeCCCCEEEecHHH-HHHHHHHHHHHHhcCccccccCCCCcccCCCcCHHHHHHHHHHHH
Confidence            56665 78899999885 555899999997532221     2245899999999999999973

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.42  E-value=0.00024  Score=40.20  Aligned_cols=62  Identities=15%  Similarity=0.202  Sum_probs=42.3

Q ss_pred             EEEEECCeEEEhhHHHHhhcCH-HHHhcCCCCCCCCCCccccCCCCHHHHHHhhhhhcCCeec
Q psy5169          32 VSLAVEGKIIQAHKVILSVCSP-YFIKCPPKKLGQSENTNFLSSFAFKIFECLVYFWTPCTVK   93 (94)
Q Consensus        32 v~l~~~~~~~~~Hk~vLa~~S~-yF~~~f~~~~~e~~~~~~l~~v~~~~~~~ll~fly~~~v~   93 (94)
                      |+|.|||+.|...+..|+.... .+.+++.............=|=+|..|+.+|+|+-+|++.
T Consensus         2 I~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~l~   64 (105)
T d1nn7a_           2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLH   64 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSCBC
T ss_pred             EEEEECCEEEEEeHHHHhcCCCCCccccccccCcCCCCCcEEEeCCHHHHHHHHHHHhcCccc
Confidence            6788999999999999987544 3333333222222222333357999999999999888753

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=95.62  E-value=0.00074  Score=37.83  Aligned_cols=57  Identities=14%  Similarity=0.205  Sum_probs=40.4

Q ss_pred             EEEEECCeEEEhhHHHHhhc-CHHHHhcCCCCCCC-CCC-ccccCCCCHHHHHHhhhhhcC
Q psy5169          32 VSLAVEGKIIQAHKVILSVC-SPYFIKCPPKKLGQ-SEN-TNFLSSFAFKIFECLVYFWTP   89 (94)
Q Consensus        32 v~l~~~~~~~~~Hk~vLa~~-S~yF~~~f~~~~~e-~~~-~~~l~~v~~~~~~~ll~fly~   89 (94)
                      |.|-|||+.|..-+..|... +.++.+++...... +.. ...+ |=+|..|+.+|+|+-+
T Consensus         3 I~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~IL~flR~   62 (100)
T d1t1da_           3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQS   62 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHT
T ss_pred             EEEEECCEEEEEeHHHHhhCCCchhHHHHhCCCcCCCCCCeEEE-ecCHHHHHHHHHHHhc
Confidence            67889999999999999874 44666655433221 112 2244 5799999999999965