Psyllid ID: psy5254

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYFA
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHcccccccHHcHHHcccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHcccccEEEEEccccHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
mfqpapltvATVFDKLKDiagmtgqasvsRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNkegirwrhiefsdntlclqlvegkpngllcvlddqakfslippddilcryfa
Flexible Loop (DISEMBL)
MFQPAPLTVATVFDKLKDIAGMtgqasvsrkIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDqakfslippddilcryfa
Low Complexity Region (SEG)
MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYFA
Disordered region (IsUnstruct)
******LTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF*
Disordered Region (DISOPRED)
**QPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYFA
Disordered Region (DISEMBL)
MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYFA
Disordered Region (DISPRO)
MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYFA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYFA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q13459	2157	Unconventional myosin-IXb	yes	N/A	0.544	0.037	0.512	1e-20
Q9Z1N3	2626	Unconventional myosin-IXa	yes	N/A	0.462	0.025	0.588	2e-20
Q9QY06	2114	Unconventional myosin-IXb	no	N/A	0.544	0.037	0.5	2e-20
Q8C170	2542	Unconventional myosin-IXa	no	N/A	0.462	0.026	0.588	2e-20
B2RTY4	2548	Unconventional myosin-IXa	no	N/A	0.462	0.026	0.588	2e-20
Q63358	1980	Unconventional myosin-IXb	no	N/A	0.544	0.040	0.5	3e-20
P51892	1070	DNA ligase 1 OS=Xenopus l	N/A	N/A	0.442	0.060	0.676	1e-18
Q9UKN7	3530	Unconventional myosin-XV	no	N/A	0.843	0.035	0.436	1e-18
Q9U1M8	2357	Myosin-I heavy chain OS=D	yes	N/A	0.462	0.028	0.558	2e-18
Q9QZZ4	3511	Unconventional myosin-XV	no	N/A	0.442	0.018	0.630	3e-18

>sp|Q13459|MYO9B_HUMAN Unconventional myosin-IXb OS=Homo sapiens GN=MYO9B PE=1 SV=3

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 55/80 (68%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W +I ++DN  C+ L+  KP GL  
Sbjct: 532 FEQFCINYANEQLQYYFNQHIFKLEQEEYQGEGITWHNIGYTDNVGCIHLISKKPTGLFY 591

Query: 126 VLDDQAKFSLIPPDDILCRY 145
           +LD+++ F       +L ++
Sbjct: 592 LLDEESNFPHATSQTLLAKF 611

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. May be involved in the remodeling of the actin cytoskeleton. Binds actin with high affinity both in the absence and presence of ATP and its mechanochemical activity is inhibited by calcium ions. Also acts as a GTPase activating protein on Rho.
Homo sapiens (taxid: 9606)

>sp|Q9Z1N3|MYO9A_RAT Unconventional myosin-IXa OS=Rattus norvegicus GN=Myo9a PE=1 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 53/68 (77%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CIN+ANE LQ+YFNQH+F+ EQEEY  EGI W +I++ DNT C+ L+  KP GLL 
Sbjct: 549 FEQFCINFANERLQHYFNQHIFKLEQEEYRTEGISWHNIDYIDNTCCINLISKKPTGLLH 608

Query: 126 VLDDQAKF 133
           +LD+++ F
Sbjct: 609 LLDEESNF 616

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Regulates Rho by stimulating it's GTPase activity in neurons, has a role in the regulation of neuronal morphology and function.

Rattus norvegicus (taxid: 10116)

>sp|Q9QY06|MYO9B_MOUSE Unconventional myosin-IXb OS=Mus musculus GN=Myo9b PE=1 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 55/80 (68%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINYANE LQYYF QH+F+ EQEEY  EGI W +I+++DN  C+ L+  KP GL  
Sbjct: 532 FEQFCINYANEQLQYYFTQHIFKLEQEEYQGEGISWHNIDYTDNVGCIHLISKKPTGLFY 591

Query: 126 VLDDQAKFSLIPPDDILCRY 145
           +LD+++ F       +L ++
Sbjct: 592 LLDEESNFPHATSHTLLAKF 611

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. May be involved in the remodeling of the actin cytoskeleton. Binds actin with high affinity both in the absence and presence of ATP and its mechanochemical activity is inhibited by calcium ions. Also acts as a GTPase activating protein on Rho.

Mus musculus (taxid: 10090)

>sp|Q8C170|MYO9A_MOUSE Unconventional myosin-IXa OS=Mus musculus GN=Myo9a PE=1 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 53/68 (77%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CIN+ANE LQ+YFNQH+F+ EQEEY  EGI W +I++ DNT C+ L+  KP GLL 
Sbjct: 549 FEQFCINFANERLQHYFNQHIFKLEQEEYRTEGISWHNIDYIDNTCCINLISKKPTGLLH 608

Query: 126 VLDDQAKF 133
           +LD+++ F
Sbjct: 609 LLDEESNF 616

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Regulates Rho activity in neurons, has a role in the regulation of neuronal morphology and function.

Mus musculus (taxid: 10090)

>sp|B2RTY4|MYO9A_HUMAN Unconventional myosin-IXa OS=Homo sapiens GN=MYO9A PE=1 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 53/68 (77%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CIN+ANE LQ+YFNQH+F+ EQEEY  EGI W +I++ DNT C+ L+  KP GLL 
Sbjct: 549 FEQFCINFANERLQHYFNQHIFKLEQEEYRTEGISWHNIDYIDNTCCINLISKKPTGLLH 608

Query: 126 VLDDQAKF 133
           +LD+++ F
Sbjct: 609 LLDEESNF 616

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Regulates Rho activity in neurons, has a role in the regulation of neuronal morphology and function.

Homo sapiens (taxid: 9606)

>sp|Q63358|MYO9B_RAT Unconventional myosin-IXb OS=Rattus norvegicus GN=Myo9b PE=1 SV=1

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 55/80 (68%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINYANE LQYYF QH+F+ EQEEY  EGI W +I+++DN  C+ L+  KP GL  
Sbjct: 532 FEQFCINYANEQLQYYFTQHIFKLEQEEYQGEGISWHNIDYTDNVGCIHLISKKPTGLFY 591

Query: 126 VLDDQAKFSLIPPDDILCRY 145
           +LD+++ F       +L ++
Sbjct: 592 LLDEESNFPHATSHTLLAKF 611

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. May be involved in the remodeling of the actin cytoskeleton. Binds actin with high affinity both in the absence and presence of ATP and its mechanochemical activity is inhibited by calcium ions. Also acts as a GTPase activating protein on Rho.

Rattus norvegicus (taxid: 10116)

>sp|P51892|DNLI1_XENLA DNA ligase 1 OS=Xenopus laevis GN=lig1 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/65 (67%), Positives = 50/65 (76%)

Query: 1   MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRI 60
           MF P  L  + VF KLKDIA MTG AS+++KID I+ LFVACRH EARY+ RSL GKLRI
Sbjct: 546 MFTPPKLMASGVFGKLKDIARMTGNASMNKKIDIIKGLFVACRHSEARYIARSLGGKLRI 605

Query: 61  GLAEH 65
           GLAE 
Sbjct: 606 GLAEQ 610

DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9UKN7|MYO15_HUMAN Unconventional myosin-XV OS=Homo sapiens GN=MYO15A PE=1 SV=2

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 72/126 (57%), Gaps = 2/126 (1%)

Query: 5    APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE 64
             PLTV +  D    IA +      S  I ++ +L V+ R       I  + G   +    
Sbjct: 1541 TPLTVESAVDARDAIAKVLYALLFSWLITRVNAL-VSPRQDTLSIAILDIYGFEDLSF-N 1598

Query: 65   HFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 124
             FEQLCINYANE+LQY FN+ VFQ EQEEY +E I W+ I F+DN  C+ L+  KP G+L
Sbjct: 1599 SFEQLCINYANENLQYLFNKIVFQEEQEEYIREQIDWQEITFADNQPCINLISLKPYGIL 1658

Query: 125  CVLDDQ 130
             +LDDQ
Sbjct: 1659 RILDDQ 1664

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments. Required for the arrangement of stereocilia in mature hair bundles.

Homo sapiens (taxid: 9606)

>sp|Q9U1M8|MYOI_DICDI Myosin-I heavy chain OS=Dictyostelium discoideum GN=myoI PE=1 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 52/68 (76%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CIN+ANE LQ +FNQH+F+ EQEEY KE I W  I ++DN  CL L+E +P G+L 
Sbjct: 393 FEQFCINFANEKLQQHFNQHIFKLEQEEYEKEKINWSKIVYNDNQECLDLIEKRPLGILS 452

Query: 126 VLDDQAKF 133
           +LD++++F
Sbjct: 453 LLDEESRF 460

Myosins are actin-based motor molecules with ATPase activity. Involved in the early steps of phagocytosis and adhesion.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9QZZ4|MYO15_MOUSE Unconventional myosin-XV OS=Mus musculus GN=Myo15a PE=1 SV=2

 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 50/65 (76%)

Query: 66   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
            FEQLCINYANE+LQY FN+ VFQ EQEEY +E + WR I F+DN  C+ L+  KP G+L 
Sbjct: 1584 FEQLCINYANENLQYLFNKIVFQEEQEEYIREQMDWREIAFADNQPCINLISLKPYGILR 1643

Query: 126  VLDDQ 130
            +LDDQ
Sbjct: 1644 ILDDQ 1648

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments (By similarity). Required for the arrangement of stereocilia in mature hair bundles.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
270002356	2021	hypothetical protein TcasGA2_TC001372 [T	0.578	0.042	0.705	1e-29
189234985	1843	PREDICTED: similar to myosin-rhogap prot	0.578	0.046	0.705	1e-29
328701265	1863	PREDICTED: myosin-IXb isoform 3 [Acyrtho	0.578	0.045	0.682	9e-29
328701267	1776	PREDICTED: myosin-IXb isoform 4 [Acyrtho	0.578	0.047	0.682	9e-29
328701269	1847	PREDICTED: myosin-IXb isoform 1 [Acyrtho	0.578	0.046	0.682	1e-28
328701263	1931	PREDICTED: myosin-IXb isoform 2 [Acyrtho	0.578	0.044	0.682	1e-28
357623270	1062	hypothetical protein KGM_18974 [Danaus p	0.578	0.080	0.682	2e-28
427791915	1463	Putative myosin class i heavy chain, par	0.503	0.050	0.729	3e-27
242011074	783	myosin IIIB, putative [Pediculus humanus	0.496	0.093	0.780	4e-27
321455065	1839	hypothetical protein DAPPUDRAFT_64918 [D	0.578	0.046	0.647	3e-26

>gi|270002356|gb|EEZ98803.1| hypothetical protein TcasGA2_TC001372 [Tribolium castaneum]

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 69/85 (81%)

Query: 61  GLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 120
           GL   FEQLCINYANEHLQYYFNQHVF+YEQEEY KEGIRW +I+F DNT CLQL+EGKP
Sbjct: 519 GLNNSFEQLCINYANEHLQYYFNQHVFKYEQEEYRKEGIRWNNIDFMDNTGCLQLIEGKP 578

Query: 121 NGLLCVLDDQAKFSLIPPDDILCRY 145
           NGLLC+LDDQ  F     + +L ++
Sbjct: 579 NGLLCLLDDQCNFPGATNETLLQKF 603

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234985|ref|XP_968193.2| PREDICTED: similar to myosin-rhogap protein, myr [Tribolium castaneum]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 69/85 (81%)

Query: 61  GLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 120
           GL   FEQLCINYANEHLQYYFNQHVF+YEQEEY KEGIRW +I+F DNT CLQL+EGKP
Sbjct: 519 GLNNSFEQLCINYANEHLQYYFNQHVFKYEQEEYRKEGIRWNNIDFMDNTGCLQLIEGKP 578

Query: 121 NGLLCVLDDQAKFSLIPPDDILCRY 145
           NGLLC+LDDQ  F     + +L ++
Sbjct: 579 NGLLCLLDDQCNFPGATNETLLQKF 603

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701265|ref|XP_003241547.1| PREDICTED: myosin-IXb isoform 3 [Acyrthosiphon pisum]

 Score =  131 bits (330), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 67/85 (78%)

Query: 61  GLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 120
           G +  FEQ CINYANEHLQYYFNQHVF+YEQEEY KEGI+W  I+F DNT CLQL+EGKP
Sbjct: 528 GTSNSFEQFCINYANEHLQYYFNQHVFKYEQEEYRKEGIKWSDIDFLDNTGCLQLIEGKP 587

Query: 121 NGLLCVLDDQAKFSLIPPDDILCRY 145
           NGLLCVLDDQ  F     + +L ++
Sbjct: 588 NGLLCVLDDQCNFPGSSSETLLQKF 612

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701267|ref|XP_003241548.1| PREDICTED: myosin-IXb isoform 4 [Acyrthosiphon pisum]

 Score =  131 bits (330), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 67/85 (78%)

Query: 61  GLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 120
           G +  FEQ CINYANEHLQYYFNQHVF+YEQEEY KEGI+W  I+F DNT CLQL+EGKP
Sbjct: 441 GTSNSFEQFCINYANEHLQYYFNQHVFKYEQEEYRKEGIKWSDIDFLDNTGCLQLIEGKP 500

Query: 121 NGLLCVLDDQAKFSLIPPDDILCRY 145
           NGLLCVLDDQ  F     + +L ++
Sbjct: 501 NGLLCVLDDQCNFPGSSSETLLQKF 525

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701269|ref|XP_001944223.2| PREDICTED: myosin-IXb isoform 1 [Acyrthosiphon pisum]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 67/85 (78%)

Query: 61  GLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 120
           G +  FEQ CINYANEHLQYYFNQHVF+YEQEEY KEGI+W  I+F DNT CLQL+EGKP
Sbjct: 528 GTSNSFEQFCINYANEHLQYYFNQHVFKYEQEEYRKEGIKWSDIDFLDNTGCLQLIEGKP 587

Query: 121 NGLLCVLDDQAKFSLIPPDDILCRY 145
           NGLLCVLDDQ  F     + +L ++
Sbjct: 588 NGLLCVLDDQCNFPGSSSETLLQKF 612

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701263|ref|XP_003241546.1| PREDICTED: myosin-IXb isoform 2 [Acyrthosiphon pisum]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 67/85 (78%)

Query: 61  GLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 120
           G +  FEQ CINYANEHLQYYFNQHVF+YEQEEY KEGI+W  I+F DNT CLQL+EGKP
Sbjct: 528 GTSNSFEQFCINYANEHLQYYFNQHVFKYEQEEYRKEGIKWSDIDFLDNTGCLQLIEGKP 587

Query: 121 NGLLCVLDDQAKFSLIPPDDILCRY 145
           NGLLCVLDDQ  F     + +L ++
Sbjct: 588 NGLLCVLDDQCNFPGSSSETLLQKF 612

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623270|gb|EHJ74495.1| hypothetical protein KGM_18974 [Danaus plexippus]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 67/85 (78%)

Query: 61  GLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 120
           G +  FEQLCINYANEHLQYYFNQHVF+YEQEEY +EGIRW  I FSDNT CLQL+EGKP
Sbjct: 521 GPSNSFEQLCINYANEHLQYYFNQHVFKYEQEEYRREGIRWTDIGFSDNTGCLQLIEGKP 580

Query: 121 NGLLCVLDDQAKFSLIPPDDILCRY 145
            GLLC+LDDQ  F     + +L ++
Sbjct: 581 GGLLCLLDDQCNFPWATNETLLQKF 605

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427791915|gb|JAA61409.1| Putative myosin class i heavy chain, partial [Rhipicephalus pulchellus]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/74 (72%), Positives = 65/74 (87%)

Query: 61  GLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 120
           G   +FEQ CIN+ANEHLQYYFNQHVF+YEQEEY KEGI+W++IEF+DNT CL L+EGKP
Sbjct: 512 GDHNNFEQFCINFANEHLQYYFNQHVFKYEQEEYQKEGIQWKNIEFTDNTGCLNLIEGKP 571

Query: 121 NGLLCVLDDQAKFS 134
           +GLLC+L+DQ  FS
Sbjct: 572 HGLLCLLNDQCNFS 585

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011074|ref|XP_002426282.1| myosin IIIB, putative [Pediculus humanus corporis] gi|212510345|gb|EEB13544.1| myosin IIIB, putative [Pediculus humanus corporis]

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/73 (78%), Positives = 61/73 (83%)

Query: 61  GLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 120
           G    FEQLCINYANEHLQ+YFNQHVF+YEQEEY KE IRW+ IEF DNT CLQL+EGKP
Sbjct: 363 GHCNSFEQLCINYANEHLQFYFNQHVFKYEQEEYRKENIRWKDIEFMDNTGCLQLIEGKP 422

Query: 121 NGLLCVLDDQAKF 133
            GLLCVLDDQ  F
Sbjct: 423 LGLLCVLDDQCNF 435

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321455065|gb|EFX66210.1| hypothetical protein DAPPUDRAFT_64918 [Daphnia pulex]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 61  GLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 120
           G    FEQ CINYANEHLQYYFNQHVF+YEQEEY +EGI W +I+F DNT CLQL E KP
Sbjct: 493 GHMNSFEQFCINYANEHLQYYFNQHVFKYEQEEYKREGIHWVNIQFVDNTGCLQLYESKP 552

Query: 121 NGLLCVLDDQAKFSLIPPDDILCRY 145
           NGLLC+LDDQ  F     + +L ++
Sbjct: 553 NGLLCILDDQCNFPGATNETLLQKF 577

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
UNIPROTKB|F1S9U2	548	F1S9U2 "Uncharacterized protei	0.544	0.145	0.512	4e-20
WB|WBGene00002040	1880	hum-7 [Caenorhabditis elegans	0.537	0.042	0.569	4.1e-20
UNIPROTKB|E1BS57	2001	Gga.50857 "Uncharacterized pro	0.544	0.039	0.512	9.5e-20
UNIPROTKB|E1C471	2031	Gga.50857 "Uncharacterized pro	0.544	0.039	0.512	9.8e-20
UNIPROTKB|E1C470	2140	Gga.50857 "Uncharacterized pro	0.544	0.037	0.512	1.1e-19
UNIPROTKB|E1BNV7	2159	MYO9B "Uncharacterized protein	0.544	0.037	0.512	3.5e-19
UNIPROTKB|E2R266	2161	MYO9B "Uncharacterized protein	0.544	0.037	0.512	3.5e-19
UNIPROTKB|G3MXH1	1104	Bt.27781 "Uncharacterized prot	0.462	0.061	0.588	5e-19
UNIPROTKB|H3BMM1	1301	MYO9A "Unconventional myosin-I	0.462	0.052	0.588	6.2e-19
UNIPROTKB|G3MXE8	1951	Bt.27781 "Uncharacterized prot	0.462	0.034	0.588	1e-18

UNIPROTKB|F1S9U2 F1S9U2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 246 (91.7 bits), Expect = 4.0e-20, P = 4.0e-20
 Identities = 41/80 (51%), Positives = 56/80 (70%)

Query:    66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
             FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W +I+++DN  C+ L+  KP GL  
Sbjct:   405 FEQFCINYANEQLQYYFNQHIFKLEQEEYQSEGISWHNIDYTDNVGCIHLISKKPTGLFY 464

Query:   126 VLDDQAKFSLIPPDDILCRY 145
             +LD+++ F       +L ++
Sbjct:   465 LLDEESNFPHATSQTLLAKF 484

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

WB|WBGene00002040 hum-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 254 (94.5 bits), Expect = 4.1e-20, P = 4.1e-20
 Identities = 45/79 (56%), Positives = 61/79 (77%)

Query:    66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
             FEQLCINYANE LQ YFNQH+FQ+EQEEY KEGI W +IE++DNT C+QL + KP G+L 
Sbjct:   556 FEQLCINYANEKLQSYFNQHIFQFEQEEYLKEGISWTNIEYTDNTECVQLFQSKPYGILR 615

Query:   126 VLDDQAKFSLIPPDDILCR 144
             ++D+++  +    D +L +
Sbjct:   616 LVDEESNINNGTDDSMLAK 634

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0060002 "plus-end directed microfilament motor activity" evidence=IDA

GO:0005516 "calmodulin binding" evidence=IPI

GO:0033275 "actin-myosin filament sliding" evidence=IDA

UNIPROTKB|E1BS57 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 247 (92.0 bits), Expect = 9.5e-20, Sum P(2) = 9.5e-20
 Identities = 41/80 (51%), Positives = 55/80 (68%)

Query:    66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
             FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W  I+++DN  C+ L+  KP GL  
Sbjct:   531 FEQFCINYANEQLQYYFNQHIFKLEQEEYKSEGITWHDIDYTDNVACIHLISKKPTGLFY 590

Query:   126 VLDDQAKFSLIPPDDILCRY 145
             +LD+++ F       +L ++
Sbjct:   591 LLDEESNFPRATNQTLLAKF 610

GO:0003774 "motor activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1C471 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 247 (92.0 bits), Expect = 9.8e-20, Sum P(2) = 9.8e-20
 Identities = 41/80 (51%), Positives = 55/80 (68%)

Query:    66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
             FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W  I+++DN  C+ L+  KP GL  
Sbjct:   531 FEQFCINYANEQLQYYFNQHIFKLEQEEYKSEGITWHDIDYTDNVACIHLISKKPTGLFY 590

Query:   126 VLDDQAKFSLIPPDDILCRY 145
             +LD+++ F       +L ++
Sbjct:   591 LLDEESNFPRATNQTLLAKF 610

GO:0003774 "motor activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1C470 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 247 (92.0 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 41/80 (51%), Positives = 55/80 (68%)

Query:    66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
             FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W  I+++DN  C+ L+  KP GL  
Sbjct:   531 FEQFCINYANEQLQYYFNQHIFKLEQEEYKSEGITWHDIDYTDNVACIHLISKKPTGLFY 590

Query:   126 VLDDQAKFSLIPPDDILCRY 145
             +LD+++ F       +L ++
Sbjct:   591 LLDEESNFPRATNQTLLAKF 610

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0000146 "microfilament motor activity" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0002548 "monocyte chemotaxis" evidence=IEA

GO:0005100 "Rho GTPase activator activity" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0030010 "establishment of cell polarity" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0032433 "filopodium tip" evidence=IEA

GO:0048246 "macrophage chemotaxis" evidence=IEA

GO:0072673 "lamellipodium morphogenesis" evidence=IEA

UNIPROTKB|E1BNV7 MYO9B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 246 (91.7 bits), Expect = 3.5e-19, P = 3.5e-19
 Identities = 41/80 (51%), Positives = 56/80 (70%)

Query:    66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
             FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W +I+++DN  C+ L+  KP GL  
Sbjct:   536 FEQFCINYANEQLQYYFNQHIFKLEQEEYQSEGISWHNIDYTDNVGCIHLISKKPTGLFY 595

Query:   126 VLDDQAKFSLIPPDDILCRY 145
             +LD+++ F       +L ++
Sbjct:   596 LLDEESNFPHATSQTLLAKF 615

GO:0072673 "lamellipodium morphogenesis" evidence=IEA

GO:0048246 "macrophage chemotaxis" evidence=IEA

GO:0032433 "filopodium tip" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030010 "establishment of cell polarity" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0005100 "Rho GTPase activator activity" evidence=IEA

GO:0002548 "monocyte chemotaxis" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0000146 "microfilament motor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2R266 MYO9B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 246 (91.7 bits), Expect = 3.5e-19, P = 3.5e-19
 Identities = 41/80 (51%), Positives = 56/80 (70%)

Query:    66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
             FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W +I+++DN  C+ L+  KP GL  
Sbjct:   532 FEQFCINYANEQLQYYFNQHIFKLEQEEYQSEGISWHNIDYTDNVGCIHLISKKPTGLFY 591

Query:   126 VLDDQAKFSLIPPDDILCRY 145
             +LD+++ F       +L ++
Sbjct:   592 LLDEESNFPHATSQTLLAKF 611

GO:0046872 "metal ion binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|G3MXH1 Bt.27781 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 241 (89.9 bits), Expect = 5.0e-19, P = 5.0e-19
 Identities = 40/68 (58%), Positives = 53/68 (77%)

Query:    66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
             FEQ CIN+ANE LQ+YFNQH+F+ EQEEY  EGI W +I++ DNT C+ L+  KP GLL 
Sbjct:   505 FEQFCINFANERLQHYFNQHIFKLEQEEYRTEGISWHNIDYIDNTCCINLISKKPTGLLH 564

Query:   126 VLDDQAKF 133
             +LD+++ F
Sbjct:   565 LLDEESNF 572

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|H3BMM1 MYO9A "Unconventional myosin-IXa" [Homo sapiens (taxid:9606)]

 Score = 241 (89.9 bits), Expect = 6.2e-19, P = 6.2e-19
 Identities = 40/68 (58%), Positives = 53/68 (77%)

Query:    66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
             FEQ CIN+ANE LQ+YFNQH+F+ EQEEY  EGI W +I++ DNT C+ L+  KP GLL 
Sbjct:   144 FEQFCINFANERLQHYFNQHIFKLEQEEYRTEGISWHNIDYIDNTCCINLISKKPTGLLH 203

Query:   126 VLDDQAKF 133
             +LD+++ F
Sbjct:   204 LLDEESNF 211

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|G3MXE8 Bt.27781 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 241 (89.9 bits), Expect = 1.0e-18, P = 1.0e-18
 Identities = 40/68 (58%), Positives = 53/68 (77%)

Query:    66 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
             FEQ CIN+ANE LQ+YFNQH+F+ EQEEY  EGI W +I++ DNT C+ L+  KP GLL 
Sbjct:   546 FEQFCINFANERLQHYFNQHIFKLEQEEYRTEGISWHNIDYIDNTCCINLISKKPTGLLH 605

Query:   126 VLDDQAKF 133
             +LD+++ F
Sbjct:   606 LLDEESNF 613

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9U1M8	MYOI_DICDI	No assigned EC number	0.5588	0.4625	0.0288	yes	N/A
P19524	MYO2_YEAST	No assigned EC number	0.5340	0.5578	0.0520	yes	N/A
Q9Z1N3	MYO9A_RAT	No assigned EC number	0.5882	0.4625	0.0258	yes	N/A
Q13459	MYO9B_HUMAN	No assigned EC number	0.5125	0.5442	0.0370	yes	N/A
O74805	MYO51_SCHPO	No assigned EC number	0.56	0.4693	0.0469	yes	N/A
Q875X3	MYO2A_NAUCC	No assigned EC number	0.5340	0.5578	0.0523	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	147
cd01385	692	cd01385, MYSc_type_IX, Myosin motor domain, type I	3e-34
smart00242	677	smart00242, MYSc, Myosin	8e-34
cd00124	679	cd00124, MYSc, Myosin motor domain	6e-31
cd01381	671	cd01381, MYSc_type_VII, Myosin motor domain, type	9e-29
cd01384	674	cd01384, MYSc_type_XI, Myosin motor domain, plant-	1e-28
pfam00063	679	pfam00063, Myosin_head, Myosin head (motor domain)	2e-28
cd01380	691	cd01380, MYSc_type_V, Myosin motor domain, type V	3e-27
cd01387	677	cd01387, MYSc_type_XV, Myosin motor domain, type X	1e-25
cd01383	677	cd01383, MYSc_type_VIII, Myosin motor domain, plan	2e-25
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	3e-25
cd01379	653	cd01379, MYSc_type_III, Myosin motor domain, type	8e-23
cd01377	693	cd01377, MYSc_type_II, Myosin motor domain, type I	5e-22
pfam04675	177	pfam04675, DNA_ligase_A_N, DNA ligase N terminus	2e-21
cd01378	674	cd01378, MYSc_type_I, Myosin motor domain, type I	2e-21
cd01382	717	cd01382, MYSc_type_VI, Myosin motor domain, type V	1e-20
TIGR00574	514	TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1	7e-18
PLN03113	744	PLN03113, PLN03113, DNA ligase 1; Provisional	2e-15
PTZ00014	821	PTZ00014, PTZ00014, myosin-A; Provisional	8e-11
PRK01109	590	PRK01109, PRK01109, ATP-dependent DNA ligase; Prov	6e-10
PRK03180	508	PRK03180, ligB, ATP-dependent DNA ligase; Reviewed	7e-05
cd01386	767	cd01386, MYSc_type_XVIII, Myosin motor domain, typ	8e-05

>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins

 Score =  125 bits (315), Expect = 3e-34
 Identities = 46/86 (53%), Positives = 59/86 (68%)

Query: 60  IGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 119
            G    FEQLCINYANE LQYYFNQH+F+ EQEEY  EGI W +IE++DN  C+QL   K
Sbjct: 389 FGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKK 448

Query: 120 PNGLLCVLDDQAKFSLIPPDDILCRY 145
           P GLL +LD+++ F       +L ++
Sbjct: 449 PTGLLYLLDEESNFPHATSQTLLAKF 474

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 692

>gnl|CDD|214580 smart00242, MYSc, Myosin

 Score =  124 bits (313), Expect = 8e-34
 Identities = 42/68 (61%), Positives = 53/68 (77%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W  I+F DN  C+ L+E KP G+L 
Sbjct: 387 FEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILS 446

Query: 126 VLDDQAKF 133
           +LD++ +F
Sbjct: 447 LLDEECRF 454

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin. Length = 677

>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain

 Score =  115 bits (291), Expect = 6e-31
 Identities = 42/69 (60%), Positives = 52/69 (75%)

Query: 65  HFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 124
            FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W  I+F+DN   + L+E KP GLL
Sbjct: 379 SFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLL 438

Query: 125 CVLDDQAKF 133
            +LD++  F
Sbjct: 439 SLLDEECLF 447

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 679

>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins

 Score =  109 bits (275), Expect = 9e-29
 Identities = 38/68 (55%), Positives = 52/68 (76%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQLCIN+ANE+LQ +F QH+F+ EQEEYN E I W+HIEF DN   L L+  KP  ++ 
Sbjct: 380 FEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMS 439

Query: 126 VLDDQAKF 133
           ++D+++KF
Sbjct: 440 LIDEESKF 447

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 671

>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

 Score =  109 bits (274), Expect = 1e-28
 Identities = 39/68 (57%), Positives = 47/68 (69%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CIN  NE LQ +FNQHVF+ EQEEY KE I W +IEF DN   L L+E KP G++ 
Sbjct: 385 FEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIA 444

Query: 126 VLDDQAKF 133
           +LD+   F
Sbjct: 445 LLDEACMF 452

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain)

 Score =  108 bits (272), Expect = 2e-28
 Identities = 39/69 (56%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
           FEQLCINYANE LQ +FN H+F+ EQEEY +EGI W  I++  DN  C+ L+E KP G+L
Sbjct: 381 FEQLCINYANEKLQQFFNHHMFKLEQEEYVREGIAWTFIDYGLDNQACIDLIEKKPPGIL 440

Query: 125 CVLDDQAKF 133
            +LD++ +F
Sbjct: 441 SLLDEECRF 449

Length = 679

>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins

 Score =  105 bits (263), Expect = 3e-27
 Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 1/67 (1%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINYANE LQ  FNQHVF+ EQEEY KEGI W  I+F DN  C+ L+E K  G+L 
Sbjct: 386 FEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESKL-GILS 444

Query: 126 VLDDQAK 132
           +LD++ +
Sbjct: 445 LLDEECR 451

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 691

>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins

 Score =  100 bits (251), Expect = 1e-25
 Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 4/129 (3%)

Query: 6   PLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEH 65
           PLTV +  D    IA +      +  I ++ +L V+         I  + G     L+ +
Sbjct: 321 PLTVESAVDARDAIAKVLYALLFNWLITRVNAL-VSPTQDTLSIAILDIYGFE--DLSFN 377

Query: 66  -FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 124
            FEQLCINYANE+LQY FN+ VFQ EQEEY +E + W  I F+DN   + L+  KP G+L
Sbjct: 378 SFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGIL 437

Query: 125 CVLDDQAKF 133
            +LDDQ  F
Sbjct: 438 RILDDQCCF 446

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

 Score =  100 bits (250), Expect = 2e-25
 Identities = 40/69 (57%), Positives = 51/69 (73%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINYANE LQ +FN+H+F+ EQEEY ++GI W  +EF DN  CL L E KP GLL 
Sbjct: 383 FEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLS 442

Query: 126 VLDDQAKFS 134
           +LD+++ F 
Sbjct: 443 LLDEESTFP 451

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score = 99.8 bits (249), Expect = 3e-25
 Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 1/67 (1%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLL 124
           FEQLCINY NE LQ +FNQH+F+ EQEEY KEGI W  I++ DN  C+ L+E K P G+L
Sbjct: 446 FEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGIL 505

Query: 125 CVLDDQA 131
            +LD++ 
Sbjct: 506 SLLDEEC 512

Length = 1463

>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins

 Score = 92.6 bits (230), Expect = 8e-23
 Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 8/89 (8%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQLCIN ANE +QYYFNQH+F +EQ+EY  EG+  R +E+ DN   L +   KP GLL 
Sbjct: 391 FEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLA 450

Query: 126 VLDDQAKF------SLIPP--DDILCRYF 146
           +LD++++F      +L+    D++  ++F
Sbjct: 451 LLDEESRFPQATDQTLVEKFEDNLKSKFF 479

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 653

>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins

 Score = 90.3 bits (225), Expect = 5e-22
 Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
           FEQLCINY NE LQ +FN H+F  EQEEY +EGI W  I+F  D    + L+E  P G+L
Sbjct: 392 FEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGIL 451

Query: 125 CVLDDQAKF 133
            +LD++  F
Sbjct: 452 SLLDEECVF 460

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 693

>gnl|CDD|218206 pfam04675, DNA_ligase_A_N, DNA ligase N terminus

 Score = 84.2 bits (209), Expect = 2e-21
 Identities = 28/64 (43%), Positives = 41/64 (64%)

Query: 1   MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRI 60
           +F+P PLTV  V++ L  IA ++G+ S   KID ++ L       EA+YLIR + G+LRI
Sbjct: 105 LFKPPPLTVQEVYETLDKIAKLSGKGSQDEKIDLLKKLLSRATPLEAKYLIRLILGELRI 164

Query: 61  GLAE 64
           G+ E
Sbjct: 165 GVGE 168

This region is found in many but not all ATP-dependent DNA ligase enzymes (EC:6.5.1.1). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I, and in Saccharomyces cerevisiae, this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In vaccinia virus this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation. Length = 177

>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins

 Score = 88.4 bits (220), Expect = 2e-21
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLL 124
           FEQ CINY NE LQ  F +   + EQEEY +EGI+W  IE+ +N +   L+EGK P G+ 
Sbjct: 384 FEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIF 443

Query: 125 CVLDD 129
            +LDD
Sbjct: 444 SILDD 448

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins

 Score = 86.4 bits (214), Expect = 1e-20
 Identities = 30/68 (44%), Positives = 45/68 (66%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINY NE LQ +FN+ + + EQE Y +EG+    + + DN  C+ L+E K NG+L 
Sbjct: 415 FEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILD 474

Query: 126 VLDDQAKF 133
           +LD++ + 
Sbjct: 475 ILDEENRL 482

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 717

>gnl|CDD|233029 TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1)

 Score = 78.5 bits (194), Expect = 7e-18
 Identities = 31/64 (48%), Positives = 42/64 (65%)

Query: 1   MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRI 60
            F PAPLTV  V++ LK IA ++G+ S  +KI  ++SL       EA+YLIR + G LRI
Sbjct: 49  SFFPAPLTVKEVYEVLKFIARLSGEGSQDKKIKLLKSLLKRATPLEAKYLIRLILGDLRI 108

Query: 61  GLAE 64
           G+AE
Sbjct: 109 GIAE 112

All proteins in this family with known functions are ATP-dependent DNA ligases. Functions include DNA repair, DNA replication, and DNA recombination (or any process requiring ligation of two single-stranded DNA sections). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 514

>gnl|CDD|215584 PLN03113, PLN03113, DNA ligase 1; Provisional

 Score = 71.6 bits (175), Expect = 2e-15
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 1   MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRI 60
           M +P PLTV  VF+  + IA  +G+ S  +K ++I++L VA   CE  YLIR L  KLRI
Sbjct: 235 MRKPEPLTVVKVFNTFQQIAKESGKDSQEKKKNRIKALLVAATDCEPLYLIRLLQTKLRI 294

Query: 61  GLAEH 65
           GLA  
Sbjct: 295 GLAGQ 299

Length = 744

>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 26/64 (40%), Positives = 36/64 (56%)

Query: 67  EQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 126
           EQL IN  NE LQ  F   VF+ E + Y  EGI    +E++ N   + L+ GK   +L +
Sbjct: 481 EQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSI 540

Query: 127 LDDQ 130
           L+DQ
Sbjct: 541 LEDQ 544

Length = 821

>gnl|CDD|234900 PRK01109, PRK01109, ATP-dependent DNA ligase; Provisional

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 2   FQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIG 61
           F   PLTV  V+D L  IA  TG+ S   KI  +  L       EA+Y+ R + G+LR+G
Sbjct: 110 FSKEPLTVKEVYDTLVKIALATGEGSQDLKIKLLAGLLKDASPLEAKYIARFVEGRLRLG 169

Query: 62  LAE 64
           + +
Sbjct: 170 VGD 172

Length = 590

>gnl|CDD|235108 PRK03180, ligB, ATP-dependent DNA ligase; Reviewed

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 4   PAP-----LTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKL 58
           PAP     LTVA V   L +IA + G  S +R+   + +LF A    E R+L R L G+L
Sbjct: 65  PAPAAEPTLTVADVDAALSEIAAVAGAGSQARRAALLAALFAAATEDEQRFLRRLLTGEL 124

Query: 59  RIG 61
           R G
Sbjct: 125 RQG 127

Length = 508

>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins

 Score = 41.0 bits (96), Expect = 8e-05
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 10/79 (12%)

Query: 61  GLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 120
             A  FE+LC NY  E LQ  F+   F    E Y +EG+    +EF        L E  P
Sbjct: 392 DRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVE---VEFD-------LAEPSP 441

Query: 121 NGLLCVLDDQAKFSLIPPD 139
              + ++D   +  ++P  
Sbjct: 442 GTTVALVDQAPQQVVVPAG 460

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 767

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
PTZ00014	821	myosin-A; Provisional	100.0
cd01381	671	MYSc_type_VII Myosin motor domain, type VII myosin	100.0
cd01384	674	MYSc_type_XI Myosin motor domain, plant-specific t	100.0
cd01383	677	MYSc_type_VIII Myosin motor domain, plant-specific	100.0
cd01387	677	MYSc_type_XV Myosin motor domain, type XV myosins.	100.0
cd01378	674	MYSc_type_I Myosin motor domain, type I myosins. M	100.0
cd01379	653	MYSc_type_III Myosin motor domain, type III myosin	100.0
cd01377	693	MYSc_type_II Myosin motor domain, type II myosins.	100.0
cd01385	692	MYSc_type_IX Myosin motor domain, type IX myosins.	100.0
cd01382	717	MYSc_type_VI Myosin motor domain, type VI myosins.	100.0
COG5022	1463	Myosin heavy chain [Cytoskeleton]	100.0
cd01380	691	MYSc_type_V Myosin motor domain, type V myosins. M	100.0
smart00242	677	MYSc Myosin. Large ATPases. ATPase; molecular moto	100.0
cd00124	679	MYSc Myosin motor domain. This catalytic (head) do	100.0
cd01386	767	MYSc_type_XVIII Myosin motor domain, type XVIII my	100.0
PF00063	689	Myosin_head: Myosin head (motor domain); InterPro:	100.0
KOG0164|consensus	1001		100.0
KOG0161|consensus	1930		100.0
KOG0162|consensus	1106		100.0
KOG0163|consensus	1259		100.0
KOG0160|consensus	862		100.0
KOG4229|consensus	1062		99.97
KOG0967|consensus	714		98.63
PLN03113	744	DNA ligase 1; Provisional	97.67
PF04675	177	DNA_ligase_A_N: DNA ligase N terminus; InterPro: I	97.35
PRK01109	590	ATP-dependent DNA ligase; Provisional	96.28
TIGR00574	514	dnl1 DNA ligase I, ATP-dependent (dnl1). All prote	96.26
PRK03180	508	ligB ATP-dependent DNA ligase; Reviewed	95.99
PRK09247	539	ATP-dependent DNA ligase; Validated	92.88

>PTZ00014 myosin-A; Provisional

Probab=100.00  E-value=4.9e-45  Score=319.41  Aligned_cols=142  Identities=20%  Similarity=0.211  Sum_probs=137.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN   83 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~   83 (147)
                      ..|+|+++|..+||++|+++|++||+|+|+.||..|.+......+|||+||+|||.+. .|+|||||||||||+||++|+
T Consensus       419 ~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~-~NSfEQLcINy~NEkLQq~F~  497 (821)
T PTZ00014        419 EGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFK-NNSLEQLFINITNEMLQKNFV  497 (821)
T ss_pred             ecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccC-cchHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999998877777899999999999999 999999999999999999999


Q ss_pred             HhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      +++|..+|++|.+|||.|..++|.||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus       498 ~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~  560 (821)
T PTZ00014        498 DIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCN  560 (821)
T ss_pred             HHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999986

>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins

Probab=100.00  E-value=1.4e-44  Score=312.22  Aligned_cols=141  Identities=32%  Similarity=0.497  Sum_probs=136.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcC-CcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVAC-RHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN   83 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~-~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~   83 (147)
                      +|+|+++|.++||++|+++|+++|+|+|++||..|... .....+|||+||+|||.+. .|+|||||||||||+||++|+
T Consensus       319 ~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~-~NsfEQLcINy~NEkLQ~~f~  397 (671)
T cd01381         319 TPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFD-VNSFEQLCINFANENLQQFFV  397 (671)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999754 4567889999999999999 999999999999999999999


Q ss_pred             HhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      +++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus       398 ~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~  460 (671)
T cd01381         398 QHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLH  460 (671)
T ss_pred             HHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999986

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr

>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

Probab=100.00  E-value=1.4e-44  Score=312.02  Aligned_cols=141  Identities=33%  Similarity=0.472  Sum_probs=137.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ   84 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~   84 (147)
                      +|+++++|.++||++|+++|+++|+|+|+.||..|.+.......|+|+||+|||.+. .|+|||||||||||+||++|++
T Consensus       325 ~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~f~~  403 (674)
T cd01384         325 KPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFK-TNSFEQFCINLTNEKLQQHFNQ  403 (674)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccC-cCCHHHHHhhhhHHHHHHHHHH
Confidence            689999999999999999999999999999999998876677899999999999999 9999999999999999999999


Q ss_pred             hhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          85 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        85 ~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      ++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus       404 ~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~  465 (674)
T cd01384         404 HVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLY  465 (674)
T ss_pred             HHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999986

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act

>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

Probab=100.00  E-value=1.9e-44  Score=311.44  Aligned_cols=142  Identities=33%  Similarity=0.533  Sum_probs=136.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCC-cCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACR-HCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYF   82 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~-~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~   82 (147)
                      .+|+|+++|.++||++|+++|+++|+|+|+.||..|.+.. ....+|||+||+|||.+. .|+|||||||||||+||++|
T Consensus       321 ~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~f  399 (677)
T cd01383         321 VQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFD-KNSFEQFCINYANERLQQHF  399 (677)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCC-CCCHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999998754 346789999999999999 99999999999999999999


Q ss_pred             HHhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          83 NQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        83 ~~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      ++++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus       400 ~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~  463 (677)
T cd01383         400 NRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLK  463 (677)
T ss_pred             HHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999986

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f

>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins

Probab=100.00  E-value=3.5e-44  Score=309.94  Aligned_cols=141  Identities=37%  Similarity=0.546  Sum_probs=135.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN   83 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~   83 (147)
                      .+|+++++|.++||++|+++|+++|+|+|+.||..|.+ .....+|+|+||||||.+. .|+|||||||||||+||++|+
T Consensus       319 ~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~-~~~~~~IgILDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~  396 (677)
T cd01387         319 FTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSP-TQDTLSIAILDIYGFEDLS-FNSFEQLCINYANENLQYLFN  396 (677)
T ss_pred             eccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCceEEEEecCccccCC-CCCHHHHHhHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999986 4456789999999999999 999999999999999999999


Q ss_pred             HhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      +++|..+|++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|+++|++|++|++
T Consensus       397 ~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~  459 (677)
T cd01387         397 KIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCH  459 (677)
T ss_pred             HHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999985

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus

>cd01378 MYSc_type_I Myosin motor domain, type I myosins

Probab=100.00  E-value=3.7e-44  Score=309.78  Aligned_cols=142  Identities=27%  Similarity=0.409  Sum_probs=136.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcC-CcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVAC-RHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN   83 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~-~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~   83 (147)
                      +|+|+++|.++||++|+++|+++|+|+|+.||..|... .....+|+|+||+|||.+. .|+|||||||||||+||++|+
T Consensus       323 ~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~  401 (674)
T cd01378         323 VPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQ-KNSFEQFCINYVNEKLQQIFI  401 (674)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccc-cccHHHHHhHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999876 4567889999999999999 999999999999999999999


Q ss_pred             HhhhHHHHHHhhhhCcccccccccCchhHHHHhhc-CcccccccchhhhhcC-CCCchHHHHhhhC
Q psy5254          84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAKFS-LIPPDDILCRYFA  147 (147)
Q Consensus        84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~-~p~Gll~lLdee~~~p-~~td~~fl~kl~~  147 (147)
                      +++|..++++|.+|||+|..++|.||++|+|||++ +|.|||++|||||++| ++||++|++||+.
T Consensus       402 ~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~  467 (674)
T cd01378         402 ELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNK  467 (674)
T ss_pred             HHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHH
Confidence            99999999999999999999999999999999999 8999999999999999 9999999999863

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon

>cd01379 MYSc_type_III Myosin motor domain, type III myosins

Probab=100.00  E-value=3.8e-44  Score=308.58  Aligned_cols=142  Identities=34%  Similarity=0.501  Sum_probs=135.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCc-----CcceeeeeeccchhhhhhhHHHHHHHhhhhhhHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRH-----CEARYLIRSLAGKLRIGLAEHFEQLCINYANEHL   78 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~-----~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l   78 (147)
                      .+|+|+++|.++||++||++|+++|+|+|+.||..|.+...     ....|+|+|++|||.+. .|+|||||||||||+|
T Consensus       325 ~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkL  403 (653)
T cd01379         325 VRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFK-KNSFEQLCINIANEQI  403 (653)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCC-CCCHHHHHhhhhHHHH
Confidence            36899999999999999999999999999999999987543     35689999999999999 9999999999999999


Q ss_pred             HHHHHHhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          79 QYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      |++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|++||++|++|++
T Consensus       404 Q~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~  471 (653)
T cd01379         404 QYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFE  471 (653)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999985

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the

>cd01377 MYSc_type_II Myosin motor domain, type II myosins

Probab=100.00  E-value=4.7e-44  Score=309.91  Aligned_cols=141  Identities=30%  Similarity=0.473  Sum_probs=137.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ   84 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~   84 (147)
                      +|+|+++|.++||++|+++|+++|+|+|+.||..|.+......+|||+||+|||.+. .|+|||||||||||+||++|++
T Consensus       332 ~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~~  410 (693)
T cd01377         332 KGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFD-FNSFEQLCINYTNEKLQQFFNH  410 (693)
T ss_pred             eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccC-CCCHHHHHHHHhHHHHHHHHHH
Confidence            689999999999999999999999999999999999877788999999999999999 9999999999999999999999


Q ss_pred             hhhHHHHHHhhhhCcccccccc-cCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          85 HVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        85 ~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      ++|+.++++|.+|||.|+.++| .||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus       411 ~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~  473 (693)
T cd01377         411 HMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLY  473 (693)
T ss_pred             HHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHH
Confidence            9999999999999999999999 5999999999999999999999999999999999999986

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro

>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins

Probab=100.00  E-value=5.6e-44  Score=309.28  Aligned_cols=141  Identities=36%  Similarity=0.640  Sum_probs=134.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCc---Ccceeeeeeccchhhhhhh-HHHHHHHhhhhhhHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRH---CEARYLIRSLAGKLRIGLA-EHFEQLCINYANEHLQY   80 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~---~~~~i~ildi~Gfe~~~~~-~~~eql~iN~~nE~l~~   80 (147)
                      .|+++++|.+.||++|+++|++||.|+|+.||..|.+...   ....|+|+|++|||.+. . |+|||||||||||+||+
T Consensus       331 ~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~-~~NsfEQLcINyaNEkLQ~  409 (692)
T cd01385         331 LPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFG-RCNSFEQLCINYANEQLQY  409 (692)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCC-CCCCHHHHhhHHHHHHHHH
Confidence            5899999999999999999999999999999999986442   35789999999999998 6 99999999999999999


Q ss_pred             HHHHhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          81 YFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        81 ~~~~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      +|++++|..++++|..|||.|..++|.||++|+|||+++|.|||++|||||++|++||++|++|+.
T Consensus       410 ~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~  475 (692)
T cd01385         410 YFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFN  475 (692)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999985

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea

>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins

Probab=100.00  E-value=8.1e-44  Score=309.23  Aligned_cols=140  Identities=26%  Similarity=0.456  Sum_probs=134.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ   84 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~   84 (147)
                      .|+|+++|.++||++|+++|+++|+|+|+.||..|.. ......|+|+||||||.+. .|+|||||||||||+||++|++
T Consensus       356 ~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~-~~~~~~IgiLDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~~  433 (717)
T cd01382         356 VPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPF-ETSSNFIGVLDIAGFEYFE-HNSFEQFCINYCNEKLQQFFNE  433 (717)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCcEEEEEeccccccCC-CCCHHHHhhhhhHHHHHHHHHH
Confidence            5799999999999999999999999999999999975 4456789999999999999 9999999999999999999999


Q ss_pred             hhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          85 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        85 ~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      ++|..++++|.+|||+|.+++|.||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus       434 ~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~tD~~f~~kl~  495 (717)
T cd01382         434 RILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQPSDQHFTSVVH  495 (717)
T ss_pred             HHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999986

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=100.00  E-value=6.9e-44  Score=317.28  Aligned_cols=141  Identities=31%  Similarity=0.536  Sum_probs=135.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ   84 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~   84 (147)
                      .|++..||...||++|+.+|+++|+|+|+.||..|........+|||+||+|||.|. .|+||||||||+||+|||+|++
T Consensus       386 ~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFE-kNSFEQlCINYtNEKLQQ~Fn~  464 (1463)
T COG5022         386 VPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFE-KNSFEQLCINYTNEKLQQFFNQ  464 (1463)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhc-cCcHHHHHHhhhhHHHHHHHHH
Confidence            689999999999999999999999999999999998755667899999999999999 9999999999999999999999


Q ss_pred             hhhHHHHHHhhhhCcccccccccCchhHHHHhhc-CcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          85 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        85 ~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~-~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      |+|..+|++|.+|||+|.+++|.||++|+|||++ .|.|||++|||||..|.+||++|..||.
T Consensus       465 h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~  527 (1463)
T COG5022         465 HMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLA  527 (1463)
T ss_pred             HHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHH
Confidence            9999999999999999999999999999999996 3789999999999999999999999986

>cd01380 MYSc_type_V Myosin motor domain, type V myosins

Probab=100.00  E-value=1.4e-43  Score=306.99  Aligned_cols=140  Identities=33%  Similarity=0.513  Sum_probs=134.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcC---CcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVAC---RHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYY   81 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~---~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~   81 (147)
                      .|+|+++|.++||++|+++|+++|.|+|+.||..|.+.   ......|+|+||||||.+. .|+|||||||||||+||++
T Consensus       323 ~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~  401 (691)
T cd01380         323 KPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFE-KNSFEQFCINYANEKLQQQ  401 (691)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccC-CCCHHHHhhhhhhHHHHHH
Confidence            68999999999999999999999999999999999876   3556789999999999999 9999999999999999999


Q ss_pred             HHHhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          82 FNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        82 ~~~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      |++++|..++++|.+|||+|+.++|.||++|+|||++ |.|||++|||||++|++||++|++||+
T Consensus       402 f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~td~~f~~kl~  465 (691)
T cd01380         402 FNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGSDESWAQKLY  465 (691)
T ss_pred             HHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCChHHHHHHHH
Confidence            9999999999999999999999999999999999996 699999999999999999999999986

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act

>smart00242 MYSc Myosin

Probab=100.00  E-value=4.2e-43  Score=303.76  Aligned_cols=141  Identities=35%  Similarity=0.575  Sum_probs=137.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ   84 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~   84 (147)
                      +|+++++|.+.||++|+++|+++|.|+|+.||..|.+......+|+|+|+||||.+. .|+|||||||||||+||++|++
T Consensus       327 ~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~-~NsfEQLcINyaNEkLq~~f~~  405 (677)
T smart00242      327 KPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFE-VNSFEQLCINYANEKLQQFFNQ  405 (677)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccc-cCCHHHHHhHhhHHHHHHHHHH
Confidence            689999999999999999999999999999999999877788999999999999999 8999999999999999999999


Q ss_pred             hhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          85 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        85 ~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      ++|..++++|.+|||.|+.++|.||++|+|||+++|.||+++|||||++|++||++|++||+
T Consensus       406 ~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~  467 (677)
T smart00242      406 HVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLN  467 (677)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999986

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.

>cd00124 MYSc Myosin motor domain

Probab=100.00  E-value=3.2e-42  Score=298.56  Aligned_cols=142  Identities=37%  Similarity=0.542  Sum_probs=137.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN   83 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~   83 (147)
                      ..|+++++|.+.||++|+++|+++|+|+|+.||..|.+.......|+|+|++|||.+. .|+|||||||||||+||++|+
T Consensus       319 ~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~-~NsfEQLcINy~NEkLq~~f~  397 (679)
T cd00124         319 TIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFE-KNSFEQLCINYANEKLQQFFN  397 (679)
T ss_pred             EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCC-CCCHHHHhcccchHHHHHHHH
Confidence            3689999999999999999999999999999999998876778899999999999999 899999999999999999999


Q ss_pred             HhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      +++|..++++|..|||.|..++|.||++|+|||+++|.||+++|||||++|+++|++|++||+
T Consensus       398 ~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~  460 (679)
T cd00124         398 QHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLN  460 (679)
T ss_pred             HHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999986

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila

>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins

Probab=100.00  E-value=2.2e-41  Score=295.23  Aligned_cols=142  Identities=25%  Similarity=0.329  Sum_probs=131.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhh-----hHHHHHHHhhhhhhHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGL-----AEHFEQLCINYANEHLQ   79 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~-----~~~~eql~iN~~nE~l~   79 (147)
                      .++++.+|.++||++||++|+++|+|+|++||..|........+|+|+||+|||.+..     .|+|||||||||||+||
T Consensus       331 ~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQ  410 (767)
T cd01386         331 SSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQ  410 (767)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccCCCCHHHHhhhhhHHHHH
Confidence            3578899999999999999999999999999999988766678999999999999973     38999999999999999


Q ss_pred             HHHHHhhhHHHHHHhhhhCcccccccc-cCchhHHHHhhcCc--------------ccccccchhhhhcCCCCchHHHHh
Q psy5254          80 YYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP--------------NGLLCVLDDQAKFSLIPPDDILCR  144 (147)
Q Consensus        80 ~~~~~~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~~p--------------~Gll~lLdee~~~p~~td~~fl~k  144 (147)
                      ++|++++|..+|++|..|||+|+...+ .||.+|++||+++|              .|||++|||||++|++||++|++|
T Consensus       411 q~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~k  490 (767)
T cd01386         411 LLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLER  490 (767)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHH
Confidence            999999999999999999999986555 79999999999765              599999999999999999999999


Q ss_pred             hh
Q psy5254         145 YF  146 (147)
Q Consensus       145 l~  146 (147)
                      |+
T Consensus       491 l~  492 (767)
T cd01386         491 LF  492 (767)
T ss_pred             HH
Confidence            86

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the

>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=100.00  E-value=1.6e-41  Score=294.89  Aligned_cols=141  Identities=36%  Similarity=0.613  Sum_probs=126.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCC-cCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACR-HCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN   83 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~-~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~   83 (147)
                      .|+++++|.++||+||+++|++||.|+|+.||..|++.. ....+|+|+|+||||.+. .|+|||||||||||+||++|+
T Consensus       321 ~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~-~N~fEQLciNyanErLq~~f~  399 (689)
T PF00063_consen  321 KPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFS-VNSFEQLCINYANERLQQFFN  399 (689)
T ss_dssp             EE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---S-SB-HHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCcccccccc-ccccccceeeeccccccceee
Confidence            579999999999999999999999999999999998866 567889999999999998 999999999999999999999


Q ss_pred             HhhhHHHHHHhhhhCcccccccc-cCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          84 QHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        84 ~~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      +++|..++++|.+|||.|+.++| .||.+|+|||+++|.|||++|||||++|+++|++|+++++
T Consensus       400 ~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~  463 (689)
T PF00063_consen  400 QHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLL  463 (689)
T ss_dssp             HHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHH
T ss_pred             eecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHH
Confidence            99999999999999999999999 9999999999999999999999999999999999999985

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....

>KOG0164|consensus

Probab=100.00  E-value=1.6e-39  Score=274.39  Aligned_cols=142  Identities=26%  Similarity=0.373  Sum_probs=133.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCC---c--CcceeeeeeccchhhhhhhHHHHHHHhhhhhhHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACR---H--CEARYLIRSLAGKLRIGLAEHFEQLCINYANEHL   78 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~---~--~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l   78 (147)
                      .+++++++|..+||++|+++|+++|.|+|..||..+....   .  ....|+++||+|||.++ .|+|||||||||||+|
T Consensus       327 ~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~-~NSFEQfcINYCNEKL  405 (1001)
T KOG0164|consen  327 LKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQ-DNSFEQFCINYCNEKL  405 (1001)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeec-CCcHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999996531   2  23679999999999999 9999999999999999


Q ss_pred             HHHHHHhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCC-CCchHHHHhhh
Q psy5254          79 QYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSL-IPPDDILCRYF  146 (147)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~-~td~~fl~kl~  146 (147)
                      |+.|++-+++++|+||..|||+|.+++|.+|.-++||++.+-.||++||||+|+.|+ .||.+||++|-
T Consensus       406 QQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~  474 (1001)
T KOG0164|consen  406 QQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLN  474 (1001)
T ss_pred             HHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999996 69999999873

>KOG0161|consensus

Probab=100.00  E-value=5e-38  Score=288.96  Aligned_cols=141  Identities=30%  Similarity=0.485  Sum_probs=135.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ   84 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~   84 (147)
                      ..-++++|..+..++|+++|+++|.|+|..||..|....+..++|||+||+||++|. .|+|+||||||+||+||++|++
T Consensus       406 k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe-~nSFEQLciNytnEkLQqfFnh  484 (1930)
T KOG0161|consen  406 KAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFE-FNSFEQLCINYTNEKLQQFFNH  484 (1930)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccC-cCCHHHHHHHHHHHHHHhhhcc
Confidence            446789999999999999999999999999999998877888999999999999999 8999999999999999999999


Q ss_pred             hhhHHHHHHhhhhCcccccccc-cCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhhC
Q psy5254          85 HVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYFA  147 (147)
Q Consensus        85 ~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~~  147 (147)
                      |+|..++++|..|||.|.+++| .|-+||++||+ +|+||+|+|||||++|++||.||++||++
T Consensus       485 ~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIE-kp~Gi~slLdEEc~~PkAtd~tf~~kL~~  547 (1930)
T KOG0161|consen  485 HMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIE-KPMGILSLLDEECVVPKATDKTFLEKLCD  547 (1930)
T ss_pred             hhhhhhHHHHHHhCCceeeeccccchhhhHHHHh-chhhHHHHHHHHHhcCCCccchHHHHHHH
Confidence            9999999999999999999999 89999999999 57899999999999999999999999974

>KOG0162|consensus

Probab=100.00  E-value=1.1e-36  Score=257.74  Aligned_cols=141  Identities=28%  Similarity=0.417  Sum_probs=131.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCc-CcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRH-CEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN   83 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~-~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~   83 (147)
                      .||+++||..+||++|+++|.+||+|+|+.||+.|....+ .+.+|||+||+|||.|. .|+||||||||.||+||+.|+
T Consensus       340 v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe-~N~FEQ~CINfVNEKLQQIFI  418 (1106)
T KOG0162|consen  340 VPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFE-NNGFEQFCINFVNEKLQQIFI  418 (1106)
T ss_pred             ecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecc-cCCHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999986554 57789999999999999 999999999999999999999


Q ss_pred             HhhhHHHHHHhhhhCcccccccccCchhHHHHhhc-CcccccccchhhhhcCC----CCchHHHHhhh
Q psy5254          84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAKFSL----IPPDDILCRYF  146 (147)
Q Consensus        84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~-~p~Gll~lLdee~~~p~----~td~~fl~kl~  146 (147)
                      +.+++.+|++|.+|||.|.++.|.||.-++|||+. .|.||+++|||.|....    +-|++|+++|-
T Consensus       419 eLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn  486 (1106)
T KOG0162|consen  419 ELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLN  486 (1106)
T ss_pred             HHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence            99999999999999999999999999999999987 48899999999999653    56889998874

>KOG0163|consensus

Probab=100.00  E-value=2.7e-36  Score=256.08  Aligned_cols=141  Identities=30%  Similarity=0.472  Sum_probs=133.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN   83 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~   83 (147)
                      ..||-+.+|...||++|+++|+.||+|+|..||..+- -..+..+|||+|+.|||.+. .|+|||||||||||+||++|+
T Consensus       409 rVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiP-Fe~St~fiGVLDiAGFEyf~-~NSFEQFCINyCNEKLQ~FFN  486 (1259)
T KOG0163|consen  409 RVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIP-FEKSTFFIGVLDIAGFEYFA-VNSFEQFCINYCNEKLQKFFN  486 (1259)
T ss_pred             EeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccc-cccccceeEEEeeccceeee-cccHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999998773 24456789999999999998 999999999999999999999


Q ss_pred             HhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      +++++.+|+.|..||+.++.+.|.||++|++||+.+..|||.+||||.++|+++++.|-.+.|
T Consensus       487 erILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vH  549 (1259)
T KOG0163|consen  487 ERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVH  549 (1259)
T ss_pred             HHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999987765

>KOG0160|consensus

Probab=100.00  E-value=2.4e-34  Score=250.16  Aligned_cols=141  Identities=35%  Similarity=0.540  Sum_probs=135.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCc-CcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRH-CEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYF   82 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~-~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~   82 (147)
                      .+|++..++...||++|+.+|+.||+|+|+.||..|....+ ...+|+|+|++|||.+. .|+|+||||||+||+||+.|
T Consensus       324 ~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~-~nsfeQfcINyanEkLqq~f  402 (862)
T KOG0160|consen  324 VKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFE-VNSFEQFCINYANEKLQQQF  402 (862)
T ss_pred             ecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccc-cCcHHHhhhhhHHHHhhHHH
Confidence            37899999999999999999999999999999999987554 47899999999999999 99999999999999999999


Q ss_pred             HHhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          83 NQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        83 ~~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      .+|+|+.++++|..|+|.|..++|.||++|+++|+. |.|++++|||+|++|.++|++|..||+
T Consensus       403 nqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~  465 (862)
T KOG0160|consen  403 NQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLY  465 (862)
T ss_pred             HHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHH
Confidence            999999999999999999999999999999999996 899999999999999999999999986

>KOG4229|consensus

Probab=99.97  E-value=2.8e-31  Score=235.50  Aligned_cols=141  Identities=36%  Similarity=0.557  Sum_probs=134.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCc--CcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRH--CEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYF   82 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~--~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~   82 (147)
                      .|+++++|.+.+|++|+.+|.++|.|++..||..+.+...  ....||++|+||||++. .|+|+|+|+|||||++|.+|
T Consensus       383 ~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~-~nsfEq~~in~Ane~lQ~~f  461 (1062)
T KOG4229|consen  383 APLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFE-RNSFEQLCINLANEQLQYYF  461 (1062)
T ss_pred             hhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchh-hhHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999987544  25789999999999996 99999999999999999999


Q ss_pred             HHhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          83 NQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        83 ~~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      .+|+|..++++|..|+|.|..+.|.||..|+++|..+|+||+.+||||+.+|+++|+|++.|+.
T Consensus       462 nqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~  525 (1062)
T KOG4229|consen  462 NQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLN  525 (1062)
T ss_pred             HHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999874

>KOG0967|consensus

Probab=98.63  E-value=2.6e-08  Score=85.15  Aligned_cols=64  Identities=61%  Similarity=0.953  Sum_probs=61.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254           1 MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE   64 (147)
Q Consensus         1 ~~~~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~   64 (147)
                      ||+|+||||..|++++..||+..|.++...+++.|-++|.+|++.|+++++|-+.|..|+|.+.
T Consensus       205 m~~P~pLtV~~VF~~Lr~IAk~sG~~S~~kK~~lik~Llvac~~~E~kyLiRsL~gkLRiGlae  268 (714)
T KOG0967|consen  205 MFKPKPLTVRDVFSTLRKIAKESGKGSQNKKKDLIKALLVACRGIEAKYLIRSLEGKLRIGLAE  268 (714)
T ss_pred             ccCCCCccHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHhcccccHHHHHHHHHhhhhhhhhH
Confidence            7899999999999999999999999999999999999999999999999999999999999633

>PLN03113 DNA ligase 1; Provisional

Probab=97.67  E-value=2e-05  Score=69.80  Aligned_cols=64  Identities=48%  Similarity=0.774  Sum_probs=60.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254           1 MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE   64 (147)
Q Consensus         1 ~~~~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~   64 (147)
                      ||+|.|||+.+|++.+..||+..|.++...+++.|.++|..+++.|.+++|+-+.|-.|+|...
T Consensus       235 ~~~~~~LTi~~V~~~L~~IA~~~G~~sq~~K~~~i~~Ll~~~~~~E~k~liR~l~g~LRIGv~e  298 (744)
T PLN03113        235 MRKPEPLTVVKVFNTFQQIAKESGKDSQEKKKNRIKALLVAATDCEPLYLIRLLQTKLRIGLAG  298 (744)
T ss_pred             ccCCCCCCHHHHHHHHHHHHhhhCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccccccccH
Confidence            4678999999999999999999999999999999999999999999999999999999999644

>PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose

Probab=97.35  E-value=6.8e-05  Score=55.10  Aligned_cols=61  Identities=36%  Similarity=0.695  Sum_probs=50.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE   64 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~   64 (147)
                      +.+||+.+|++.++.||...|+++...+.+.+..++..+++.|..++++.+.|-.++|...
T Consensus       108 ~~~lTi~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~s~~E~k~i~Riil~~lriG~~~  168 (177)
T PF04675_consen  108 PSPLTISEVNETLDELAAASGKGSQDEKIDILKELLRRCSPEEAKWIVRIILKDLRIGVSE  168 (177)
T ss_dssp             SS--BHHHHHHHHHHHHH--STTHHHHHHHHHHHHHTTS-HHHHHHHHHHHTT--SSS--H
T ss_pred             CCCCCHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeCccH
Confidence            6899999999999999999999999999999999999999999999999999999999543

It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This region is found in many but not all ATP-dependent DNA ligase enzymes (6.5.1.1 from EC). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I (P18858 from SWISSPROT), and in Saccharomyces cerevisiae (Baker's yeast) (P04819 from SWISSPROT), this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In Vaccinia virus (P16272 from SWISSPROT) this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation []. ; GO: 0003677 DNA binding, 0003910 DNA ligase (ATP) activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 2CFM_A 3RR5_A 2HIX_A 2HIV_A 3L2P_A 1X9N_A 4EQ5_A 3GDE_A.

>PRK01109 ATP-dependent DNA ligase; Provisional

Probab=96.28  E-value=0.002  Score=56.10  Aligned_cols=64  Identities=38%  Similarity=0.602  Sum_probs=58.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHH
Q psy5254           2 FQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEH   65 (147)
Q Consensus         2 ~~~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~   65 (147)
                      +.+.|||+.++++.++.||+..++++...+.+.|..+|..+++.+..++++-+.|-.++|.+..
T Consensus       110 ~~~~~lti~eV~~~L~~Ia~~sg~~s~~~k~~iL~~Ll~~~~~~E~k~iirli~g~lriGv~e~  173 (590)
T PRK01109        110 FSKEPLTVKEVYDTLVKIALATGEGSQDLKIKLLAGLLKDASPLEAKYIARFVEGRLRLGVGDA  173 (590)
T ss_pred             CCCCCcCHHHHHHHHHHHHhhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCccHH
Confidence            3578899999999999999999999999999999999999999999999999999999986443

>TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1)

Probab=96.26  E-value=0.0044  Score=53.05  Aligned_cols=62  Identities=47%  Similarity=0.742  Sum_probs=57.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254           3 QPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE   64 (147)
Q Consensus         3 ~~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~   64 (147)
                      .+.+||+.+|++.++.||+..+.++...+.+.|.+++..+++.+.+++++-+.|-.++|...
T Consensus        51 ~~~~lti~eV~~~L~~ia~~~g~~s~~~k~~~l~~ll~~~~~~e~k~l~r~i~~~lriG~~~  112 (514)
T TIGR00574        51 FSAPLTVKEVYETLKNIAETSGEGSQDKKIKLLKSLLKRASPLEAKYLIRTILGDLRIGIAE  112 (514)
T ss_pred             CCCCcCHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcccCccH
Confidence            46889999999999999999999999999999999999999999999999999999988643

All proteins in this family with known functions are ATP-dependent DNA ligases. Functions include DNA repair, DNA replication, and DNA recombination (or any process requiring ligation of two single-stranded DNA sections). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03180 ligB ATP-dependent DNA ligase; Reviewed

Probab=95.99  E-value=0.0023  Score=54.79  Aligned_cols=62  Identities=37%  Similarity=0.517  Sum_probs=57.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEH   65 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~   65 (147)
                      +.+||+.+|++.++.||+..+.++...+++.|..++..+++.|.+++++.+.|-.|+|...+
T Consensus        70 ~~~ltl~~V~~~l~~ia~~~g~~s~~~k~~~l~~ll~~~~~~E~~~l~r~i~~~lRiGv~~~  131 (508)
T PRK03180         70 EPTLTVADVDAALSEIAAVAGAGSQARRAALLAALFAAATEDEQRFLRRLLTGELRQGALDG  131 (508)
T ss_pred             CCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcccccHH
Confidence            46799999999999999999999999999999999999999999999999999999996443

>PRK09247 ATP-dependent DNA ligase; Validated

Probab=92.88  E-value=0.068  Score=46.20  Aligned_cols=54  Identities=15%  Similarity=0.193  Sum_probs=47.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE   64 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~   64 (147)
                      +.++|+.+++.++..+++..       +.+.|.+++.++++.+.+++++-+.|-.|+|...
T Consensus       101 ~~~~tv~~v~~~l~~~~~~~-------k~~~l~~ll~~~~~~e~~~i~rli~g~lRiG~~~  154 (539)
T PRK09247        101 PLAPWLEEVLLPLRGLGREE-------LRAALADLWDRLDEDGRFALNKLITGGFRVGVSA  154 (539)
T ss_pred             CccccHHHHHHHHHhhhHHH-------HHHHHHHHHHhCCHHHHHHHHHHhhCccccchhH
Confidence            46799999999999998753       7788999999999999999999999999999644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	147
2ec6_A	838	Placopecten Striated Muscle Myosin Ii Length = 838		3e-16
2os8_A	840	Rigor-Like Structures Of Muscle Myosins Reveal Key		3e-16
1b7t_A	835	Myosin Digested By Papain Length = 835		5e-16
1dfl_A	831	Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra		5e-16
1dfk_A	830	Nucleotide-Free Scallop Myosin S1-Near Rigor State		5e-16
1qvi_A	840	Crystal Structure Of Scallop Myosin S1 In The Pre-P		6e-16
1kk7_A	837	Scallop Myosin In The Near Rigor Conformation Lengt		6e-16
1x9n_A	688	Crystal Structure Of Human Dna Ligase I Bound To 5'		8e-16
3i5g_A	839	Crystal Structure Of Rigor-Like Squid Myosin S1 Len		9e-16
2xo8_A	776	Crystal Structure Of Myosin-2 In Complex With Tribr		1e-15
3mnq_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		1e-15
2x9h_A	695	Crystal Structure Of Myosin-2 Motor Domain In Compl		1e-15
2xel_A	776	Molecular Mechanism Of Pentachloropseudilin Mediate		1e-15
2jhr_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		1e-15
1mma_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		1e-15
2y9e_X	758	Structural Basis For The Allosteric Interference Of		1e-15
1jwy_A	776	Crystal Structure Of The Dynamin A Gtpase Domain Co		1e-15
2aka_A	776	Structure Of The Nucleotide-Free Myosin Ii Motor Do		1e-15
1fmv_A	761	Crystal Structure Of The Apo Motor Domain Of Dictyo		1e-15
2y0r_X	758	Structural Basis For The Allosteric Interference Of		1e-15
1d0x_A	761	Dictyostelium Myosin S1dc (Motor Domain Fragment) C		2e-15
1yv3_A	762	The Structural Basis Of Blebbistatin Inhibition And		2e-15
3myh_X	762	Insights Into The Importance Of Hydrogen Bonding In		2e-15
1mmn_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		2e-15
1g8x_A	1010	Structure Of A Genetically Engineered Molecular Mot		2e-15
1oe9_A	795	Crystal Structure Of Myosin V Motor With Essential		2e-15
1mmg_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		2e-15
1mmd_A	762	Truncated Head Of Myosin From Dictyostelium Discoid		2e-15
1w8j_A	766	Crystal Structure Of Myosin V Motor Domain - Nucleo		2e-15
1w9l_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		2e-15
1w9j_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		2e-15
1w9i_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		2e-15
2dfs_A	1080	3-D Structure Of Myosin-V Inhibited State Length =		2e-15
3mkd_A	692	Crystal Structure Of Myosin-2 Dictyostelium Discoid		2e-15
1w9k_A	770	Dictyostelium Discoideum Myosin Ii Motor Domain S45		2e-15
2w4g_M	840	Isometrically Contracting Insect Asynchronous Fligh		2e-15
4db1_A	783	Cardiac Human Myosin S1dc, Beta Isoform Complexed W		4e-15
1lvk_A	762	X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N		5e-15
2mys_A	843	Myosin Subfragment-1, Alpha Carbon Coordinates Only		7e-14
1m8q_A	840	Molecular Models Of Averaged Rigor Crossbridges Fro		7e-14
1br1_A	820	Smooth Muscle Myosin Motor Domain-Essential Light C		3e-13
1br2_A	791	Smooth Muscle Myosin Motor Domain Complexed With Mg		3e-13
3dtp_A	971	Tarantula Heavy Meromyosin Obtained By Flexible Doc		3e-13
3dtp_B	973	Tarantula Heavy Meromyosin Obtained By Flexible Doc		3e-13
3j04_A	909	Em Structure Of The Heavy Meromyosin Subfragment Of		3e-13
1i84_S	1184	Cryo-Em Structure Of The Heavy Meromyosin Subfragme		3e-13
2ycu_A	995	Crystal Structure Of Human Non Muscle Myosin 2c In		4e-13
2bki_A	858	Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St		3e-12
4dbr_A	786	Myosin Vi D179y (md) Pre-powerstroke State Length =		3e-12
4e7z_A	798	Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F		3e-12
4e7s_A	798	Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat		3e-12
2x51_A	789	M6 Delta Insert1 Length = 789		3e-12
2vas_A	788	Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo		3e-12
4dbq_A	788	Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos		3e-12
4dbp_A	814	Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal		3e-12
3l9i_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant		3e-12
2bkh_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc		3e-12
2v26_A	784	Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L		3e-12
4anj_A	1052	Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St		4e-12
1lkx_A	697	Motor Domain Of Myoe, A Class-I Myosin Length = 697		4e-12
4a7f_C	697	Structure Of The Actin-Tropomyosin-Myosin Complex (		5e-12
2cfm_A	561	Atp-Dependent Dna Ligase From Pyrococcus Furiosus L		4e-06
4eq5_A	571	Dna Ligase From The Archaeon Thermococcus Sibiricus		9e-06
3rr5_A	570	Dna Ligase From The Archaeon Thermococcus Sp. 1519		2e-05
3gde_A	558	The Closed Conformation Of Atp-Dependent Dna Ligase		3e-05
2hiv_A	621	Atp-Dependent Dna Ligase From S. Solfataricus Lengt		5e-04

>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
           FEQLCINY NE LQ +FN H+F  EQEEY KEGI+W  I+F  D  +C+ L+E KP G+L
Sbjct: 474 FEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIQWEFIDFGMDLQMCIDLIE-KPMGIL 532
Query: 125 CVLDDQAKF 133
            +L+++  F
Sbjct: 533 SILEEECMF 541

>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
           FEQLCINY NE LQ +FN H+F  EQEEY KEGI+W  I+F  D  +C+ L+E KP G+L
Sbjct: 473 FEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIQWEFIDFGMDLQMCIDLIE-KPMGIL 531
Query: 125 CVLDDQAKF 133
            +L+++  F
Sbjct: 532 SILEEECMF 540

>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
           FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  D  +C+ L+E KP G+L
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGIL 530
Query: 125 CVLDDQAKF 133
            +L+++  F
Sbjct: 531 SILEEECMF 539

>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
           FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  D  +C+ L+E KP G+L
Sbjct: 468 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGIL 526
Query: 125 CVLDDQAKF 133
            +L+++  F
Sbjct: 527 SILEEECMF 535

>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
           FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  D  +C+ L+E KP G+L
Sbjct: 467 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGIL 525
Query: 125 CVLDDQAKF 133
            +L+++  F
Sbjct: 526 SILEEECMF 534

>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
           FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  D  +C+ L+E KP G+L
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGIL 530
Query: 125 CVLDDQAKF 133
            +L+++  F
Sbjct: 531 SILEEECMF 539

>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
           FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  D  +C+ L+E KP G+L
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGIL 530
Query: 125 CVLDDQAKF 133
            +L+++  F
Sbjct: 531 SILEEECMF 539

>pdb|1X9N|A Chain A, Crystal Structure Of Human Dna Ligase I Bound To 5'-Adenylated, Nicked Dna Length = 688

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 46/58 (79%)
Query: 8   TVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEH 65
           T + VF K +DIA +TG AS ++KID I+ LFVACRH EAR++ RSL+G+LR+GLAE 
Sbjct: 169 TASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQ 226

>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
           FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  D   C++L+E KP G+L
Sbjct: 475 FEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIVWEFIDFGLDLQACIELIE-KPMGIL 533
Query: 125 CVLDDQAKF 133
            +L+++  F
Sbjct: 534 SILEEECMF 542

>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 40  VACRHCEARYL-IRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 98
           V C+  +A ++ +  ++G   I     FEQLCINY NE LQ +FN H+F+ EQEEY KE 
Sbjct: 439 VLCQERKAYFIGVLDISG-FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEK 497
Query: 99  IRWRHIEFS-DNTLCLQLVEGK-PNGLLCVLDDQAKF 133
           I W  I+F  D+   + L++G+ P G+L +LD+Q+ F
Sbjct: 498 INWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 534

>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 40  VACRHCEARYL-IRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 98
           V C+  +A ++ +  ++G   I     FEQLCINY NE LQ +FN H+F+ EQEEY KE 
Sbjct: 451 VLCQERKAYFIGVLDISG-FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEK 509
Query: 99  IRWRHIEFS-DNTLCLQLVEGK-PNGLLCVLDDQAKF 133
           I W  I+F  D+   + L++G+ P G+L +LD+Q+ F
Sbjct: 510 INWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 546

>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 40  VACRHCEARYL-IRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 98
           V C+  +A ++ +  ++G   I     FEQLCINY NE LQ +FN H+F+ EQEEY KE 
Sbjct: 439 VLCQERKAYFIGVLDISG-FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEK 497
Query: 99  IRWRHIEFS-DNTLCLQLVEGK-PNGLLCVLDDQAKF 133
           I W  I+F  D+   + L++G+ P G+L +LD+Q+ F
Sbjct: 498 INWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 534

>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 40  VACRHCEARYL-IRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 98
           V C+  +A ++ +  ++G   I     FEQLCINY NE LQ +FN H+F+ EQEEY KE 
Sbjct: 439 VLCQERKAYFIGVLDISG-FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEK 497
Query: 99  IRWRHIEFS-DNTLCLQLVEGK-PNGLLCVLDDQAKF 133
           I W  I+F  D+   + L++G+ P G+L +LD+Q+ F
Sbjct: 498 INWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 534

>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 40  VACRHCEARYL-IRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 98
           V C+  +A ++ +  ++G   I     FEQLCINY NE LQ +FN H+F+ EQEEY KE 
Sbjct: 451 VLCQERKAYFIGVLDISG-FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEK 509
Query: 99  IRWRHIEFS-DNTLCLQLVEGK-PNGLLCVLDDQAKF 133
           I W  I+F  D+   + L++G+ P G+L +LD+Q+ F
Sbjct: 510 INWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 546

>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 40  VACRHCEARYL-IRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 98
           V C+  +A ++ +  ++G   I     FEQLCINY NE LQ +FN H+F+ EQEEY KE 
Sbjct: 440 VLCQERKAYFIGVLDISG-FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEK 498
Query: 99  IRWRHIEFS-DNTLCLQLVEGK-PNGLLCVLDDQAKF 133
           I W  I+F  D+   + L++G+ P G+L +LD+Q+ F
Sbjct: 499 INWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 535

>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 40  VACRHCEARYL-IRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 98
           V C+  +A ++ +  ++G   I     FEQLCINY NE LQ +FN H+F+ EQEEY KE 
Sbjct: 439 VLCQERKAYFIGVLDISG-FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEK 497
Query: 99  IRWRHIEFS-DNTLCLQLVEGK-PNGLLCVLDDQAKF 133
           I W  I+F  D+   + L++G+ P G+L +LD+Q+ F
Sbjct: 498 INWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 534

>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 40  VACRHCEARYL-IRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 98
           V C+  +A ++ +  ++G   I     FEQLCINY NE LQ +FN H+F+ EQEEY KE 
Sbjct: 451 VLCQERKAYFIGVLDISG-FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEK 509
Query: 99  IRWRHIEFS-DNTLCLQLVEGK-PNGLLCVLDDQAKF 133
           I W  I+F  D+   + L++G+ P G+L +LD+Q+ F
Sbjct: 510 INWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 546

>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 40  VACRHCEARYL-IRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 98
           V C+  +A ++ +  ++G   I     FEQLCINY NE LQ +FN H+F+ EQEEY KE 
Sbjct: 451 VLCQERKAYFIGVLDISG-FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEK 509
Query: 99  IRWRHIEFS-DNTLCLQLVEGK-PNGLLCVLDDQAKF 133
           I W  I+F  D+   + L++G+ P G+L +LD+Q+ F
Sbjct: 510 INWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 546

>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 40  VACRHCEARYL-IRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 98
           V C+  +A ++ +  ++G   I     FEQLCINY NE LQ +FN H+F+ EQEEY KE 
Sbjct: 440 VLCQERKAYFIGVLDISG-FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEK 498
Query: 99  IRWRHIEFS-DNTLCLQLVEGK-PNGLLCVLDDQAKF 133
           I W  I+F  D+   + L++G+ P G+L +LD+Q+ F
Sbjct: 499 INWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 535

>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 40  VACRHCEARYL-IRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 98
           V C+  +A ++ +  ++G   I     FEQLCINY NE LQ +FN H+F+ EQEEY KE 
Sbjct: 439 VLCQERKAYFIGVLDISG-FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEK 497
Query: 99  IRWRHIEFS-DNTLCLQLVEGK-PNGLLCVLDDQAKF 133
           I W  I+F  D+   + L++G+ P G+L +LD+Q+ F
Sbjct: 498 INWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 534

>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 40  VACRHCEARYL-IRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 98
           V C+  +A ++ +  ++G   I     FEQLCINY NE LQ +FN H+F+ EQEEY KE 
Sbjct: 440 VLCQERKAYFIGVLDISG-FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEK 498
Query: 99  IRWRHIEFS-DNTLCLQLVEGK-PNGLLCVLDDQAKF 133
           I W  I+F  D+   + L++G+ P G+L +LD+Q+ F
Sbjct: 499 INWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 535

>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 40  VACRHCEARYL-IRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 98
           V C+  +A ++ +  ++G   I     FEQLCINY NE LQ +FN H+F+ EQEEY KE 
Sbjct: 440 VLCQERKAYFIGVLDISG-FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEK 498
Query: 99  IRWRHIEFS-DNTLCLQLVEGK-PNGLLCVLDDQAKF 133
           I W  I+F  D+   + L++G+ P G+L +LD+Q+ F
Sbjct: 499 INWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 535

>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 40  VACRHCEARYL-IRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 98
           V C+  +A ++ +  ++G   I     FEQLCINY NE LQ +FN H+F+ EQEEY KE 
Sbjct: 440 VLCQERKAYFIGVLDISG-FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEK 498
Query: 99  IRWRHIEFS-DNTLCLQLVEGK-PNGLLCVLDDQAKF 133
           I W  I+F  D+   + L++G+ P G+L +LD+Q+ F
Sbjct: 499 INWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 535

>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 123
           FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 124 LCVLDDQAKF 133
           L +LD+Q+ F
Sbjct: 526 LALLDEQSVF 535

>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 123
           FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 124 LCVLDDQAKF 133
           L +LD+Q+ F
Sbjct: 526 LALLDEQSVF 535

>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  G+L 
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLD 507
Query: 126 VLDDQAKF 133
           +LD++ K 
Sbjct: 508 LLDEECKM 515

>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 123
           FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 124 LCVLDDQAKF 133
           L +LD+Q+ F
Sbjct: 526 LALLDEQSVF 535

>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 123
           FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 124 LCVLDDQAKF 133
           L +LD+Q+ F
Sbjct: 526 LALLDEQSVF 535

>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  G+L 
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLD 507
Query: 126 VLDDQAKF 133
           +LD++ K 
Sbjct: 508 LLDEECKM 515

>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 123
           FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 124 LCVLDDQAKF 133
           L +LD+Q+ F
Sbjct: 526 LALLDEQSVF 535

>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 123
           FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 124 LCVLDDQAKF 133
           L +LD+Q+ F
Sbjct: 526 LALLDEQSVF 535

>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 123
           FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 124 LCVLDDQAKF 133
           L +LD+Q+ F
Sbjct: 526 LALLDEQSVF 535

>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  G+L 
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLD 507
Query: 126 VLDDQAKF 133
           +LD++ K 
Sbjct: 508 LLDEECKM 515

>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 123
           FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G+ P G+
Sbjct: 465 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 524
Query: 124 LCVLDDQAKF 133
           L +LD+Q+ F
Sbjct: 525 LALLDEQSVF 534

>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 123
           FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 124 LCVLDDQAKF 133
           L +LD+Q+ F
Sbjct: 526 LALLDEQSVF 535

>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
           FEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  D   C+ L+E KP G++
Sbjct: 473 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGIM 531
Query: 125 CVLDDQAKF 133
            +L+++  F
Sbjct: 532 SILEEECMF 540

>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 123
           FEQLCINY NE LQ +FN H+F+ EQE+Y KE I W  I+F  D+   + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEKYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 124 LCVLDDQAKF 133
           L +LD+Q+ F
Sbjct: 526 LALLDEQSVF 535

>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
           FEQLCIN+ NE LQ +FN H+F  EQEEY  EGI W  I+F  D   C++L+E  P G+ 
Sbjct: 475 FEQLCINFTNEXLQQFFNHHMFVLEQEEYXXEGIEWEFIDFGMDLAACIELIE-XPMGIF 533
Query: 125 CVLDDQAKF 133
            +L+++  F
Sbjct: 534 SILEEECMF 542

>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
           FEQLCIN+ NE LQ +FN H+F  EQEEY  EGI W  I+F  D   C++L+E  P G+ 
Sbjct: 472 FEQLCINFTNEXLQQFFNHHMFVLEQEEYXXEGIEWEFIDFGMDLAACIELIE-XPMGIF 530
Query: 125 CVLDDQAKF 133
            +L+++  F
Sbjct: 531 SILEEECMF 539

>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE--GKPNG 122
           FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E    P G
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 535
Query: 123 LLCVLDDQAKF 133
           +L +LD++  F
Sbjct: 536 VLALLDEECWF 546

>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE--GKPNG 122
           FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E    P G
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 535
Query: 123 LLCVLDDQAKF 133
           +L +LD++  F
Sbjct: 536 VLALLDEECWF 546

>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE--GKPNG 122
           FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E    P G
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 535
Query: 123 LLCVLDDQAKF 133
           +L +LD++  F
Sbjct: 536 VLALLDEECWF 546

>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE--GKPNG 122
           FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E    P G
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 535
Query: 123 LLCVLDDQAKF 133
           +L +LD++  F
Sbjct: 536 VLALLDEECWF 546

>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE--GKPNG 122
           FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E    P G
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 535
Query: 123 LLCVLDDQAKF 133
           +L +LD++  F
Sbjct: 536 VLALLDEECWF 546

>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE--GKPNG 122
           FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E    P G
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 535
Query: 123 LLCVLDDQAKF 133
           +L +LD++  F
Sbjct: 536 VLALLDEECWF 546

>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE--GKPNG 122
           FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  ++F  D   C+ L+E    P G
Sbjct: 445 FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPG 504
Query: 123 LLCVLDDQAKF 133
           LL +LD++  F
Sbjct: 505 LLALLDEECWF 515

>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN  C+ L+E +  G+L 
Sbjct: 468 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 527
Query: 126 VLDDQAKFSLIPPDD 140
           +LD++ +  L  P D
Sbjct: 528 ILDEENR--LPQPSD 540

>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN  C+ L+E +  G+L 
Sbjct: 465 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 524
Query: 126 VLDDQAKFSLIPPDD 140
           +LD++ +  L  P D
Sbjct: 525 ILDEENR--LPQPSD 537

>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN  C+ L+E +  G+L 
Sbjct: 477 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 536
Query: 126 VLDDQAKFSLIPPDD 140
           +LD++ +  L  P D
Sbjct: 537 ILDEENR--LPQPSD 549

>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN  C+ L+E +  G+L 
Sbjct: 477 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 536
Query: 126 VLDDQAKFSLIPPDD 140
           +LD++ +  L  P D
Sbjct: 537 ILDEENR--LPQPSD 549

>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN  C+ L+E +  G+L 
Sbjct: 442 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 501
Query: 126 VLDDQAKFSLIPPDD 140
           +LD++ +  L  P D
Sbjct: 502 ILDEENR--LPQPSD 514

>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN  C+ L+E +  G+L 
Sbjct: 441 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 500
Query: 126 VLDDQAKFSLIPPDD 140
           +LD++ +  L  P D
Sbjct: 501 ILDEENR--LPQPSD 513

>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN  C+ L+E +  G+L 
Sbjct: 441 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 500
Query: 126 VLDDQAKFSLIPPDD 140
           +LD++ +  L  P D
Sbjct: 501 ILDEENR--LPQPSD 513

>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN  C+ L+E +  G+L 
Sbjct: 467 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 526
Query: 126 VLDDQAKFSLIPPDD 140
           +LD++ +  L  P D
Sbjct: 527 ILDEENR--LPQPSD 539

>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN  C+ L+E +  G+L 
Sbjct: 467 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 526
Query: 126 VLDDQAKFSLIPPDD 140
           +LD++ +  L  P D
Sbjct: 527 ILDEENR--LPQPSD 539

>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN  C+ L+E +  G+L 
Sbjct: 467 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 526
Query: 126 VLDDQAKFSLIPPDD 140
           +LD++ +  L  P D
Sbjct: 527 ILDEENR--LPQPSD 539

>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN  C+ L+E +  G+L 
Sbjct: 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 523
Query: 126 VLDDQAKFSLIPPDD 140
           +LD++ +  L  P D
Sbjct: 524 ILDEENR--LPQPSD 536

>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN  C+ L+E +  G+L 
Sbjct: 468 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 527
Query: 126 VLDDQAKFSLIPPDD 140
           +LD++ +  L  P D
Sbjct: 528 ILDEENR--LPQPSD 540

>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL+ 
Sbjct: 398 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 457
Query: 126 VLDD 129
           +LD+
Sbjct: 458 LLDE 461

>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL+ 
Sbjct: 398 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 457
Query: 126 VLDD 129
           +LD+
Sbjct: 458 LLDE 461

>pdb|2CFM|A Chain A, Atp-Dependent Dna Ligase From Pyrococcus Furiosus Length = 561

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 6   PLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE 64
           PLT+  V+  L  +A  TG+ S  +K+  +  LF      EA+YL R++ G  R G+AE
Sbjct: 110 PLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFXDAEPLEAKYLARTILGTXRTGVAE 168

>pdb|4EQ5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sibiricus Length = 571

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 2   FQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIG 61
           F   PLT+  V++ L  IA  +G  S  RK+  + +LF+     E +YL R++ G +R G
Sbjct: 118 FFSQPLTIERVYNTLVKIAEASGAGSQDRKLKYLANLFMDASPDEGKYLARTVLGIMRTG 177
Query: 62  LAE 64
           +AE
Sbjct: 178 VAE 180

>pdb|3RR5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sp. 1519 Length = 570

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 2   FQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIG 61
           F   PLT+  V+     +A  +G+ S  RK+  + +LF+  +  E +Y+ R++ G +R G
Sbjct: 117 FFSQPLTIKRVYSTFVKVAEASGEGSQDRKMKYLANLFMDAQPEEGKYIARTVLGTMRTG 176
Query: 62  LAE 64
           +AE
Sbjct: 177 VAE 179

>pdb|3GDE|A Chain A, The Closed Conformation Of Atp-Dependent Dna Ligase From Archaeoglobus Fulgidus Length = 558

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 7   LTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE 64
           LTV  V +   +IA +TG+ S+ RKI  +  L+      EARYL R +  ++R+G+ E
Sbjct: 115 LTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGLATPLEARYLTRLILNEMRLGVGE 172

>pdb|2HIV|A Chain A, Atp-Dependent Dna Ligase From S. Solfataricus Length = 621

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 7   LTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE 64
           LTV  V+  L  +A  TG+ S   KI  +  L       EA++L+R + G+LR+G+ +
Sbjct: 139 LTVDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGD 196

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	3e-36
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	3e-35
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-34
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	8e-34
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-32
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	4e-32
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-32
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	1e-31
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	1e-31
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-31
3gde_A	558	DNA ligase; DNA-binding domain, adenylation domain	2e-17
2hiv_A	621	Thermostable DNA ligase; ATP-dependent, open confo	2e-17
1x9n_A	688	DNA ligase I; 5'-adenylated nicked DNA, protein-DN	1e-16
2cfm_A	561	Thermostable DNA ligase; protein-nucleotide comple	1e-15
3l2p_A	579	DNA ligase 3; DNA ligase, DNA repair, ATP-binding,	3e-14

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784

 Score =  130 bits (329), Expect = 3e-36
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN  C+ L+E +  G+L 
Sbjct: 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 523

Query: 126 VLDDQAKF 133
           +LD++ + 
Sbjct: 524 ILDEENRL 531

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697

 Score =  127 bits (322), Expect = 3e-35
 Identities = 31/68 (45%), Positives = 44/68 (64%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL+ 
Sbjct: 398 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 457

Query: 126 VLDDQAKF 133
           +LD+    
Sbjct: 458 LLDEACLI 465

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score =  125 bits (316), Expect = 2e-34
 Identities = 38/68 (55%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E    G+L 
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507

Query: 126 VLDDQAKF 133
           +LD++ K 
Sbjct: 508 LLDEECKM 515

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795

 Score =  123 bits (311), Expect = 8e-34
 Identities = 38/68 (55%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 125
           FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E    G+L 
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507

Query: 126 VLDDQAKF 133
           +LD++ K 
Sbjct: 508 LLDEECKM 515

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score =  118 bits (299), Expect = 3e-32
 Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNG 122
           FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  ++F  D   C+ L+E    P G
Sbjct: 445 FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPG 504

Query: 123 LLCVLDDQAKF 133
           LL +LD++  F
Sbjct: 505 LLALLDEECWF 515

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770

 Score =  118 bits (299), Expect = 4e-32
 Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 2/70 (2%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 123
           FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525

Query: 124 LCVLDDQAKF 133
           L +LD+Q+ F
Sbjct: 526 LALLDEQSVF 535

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score =  118 bits (299), Expect = 4e-32
 Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 2/70 (2%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 123
           FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525

Query: 124 LCVLDDQAKF 133
           L +LD+Q+ F
Sbjct: 526 LALLDEQSVF 535

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783

 Score =  117 bits (296), Expect = 1e-31
 Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 2/69 (2%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
           FEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  D   C+ L+E KP G++
Sbjct: 473 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGIM 531

Query: 125 CVLDDQAKF 133
            +L+++  F
Sbjct: 532 SILEEECMF 540

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score =  117 bits (295), Expect = 1e-31
 Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 2/69 (2%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 124
           FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  D  +C+ L+E KP G+L
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGIL 530

Query: 125 CVLDDQAKF 133
            +L+++  F
Sbjct: 531 SILEEECMF 539

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  116 bits (291), Expect = 4e-31
 Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 66  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK--PNG 122
           FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E    P G
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 535

Query: 123 LLCVLDDQAKF 133
           +L +LD++  F
Sbjct: 536 VLALLDEECWF 546

>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} Length = 558

 Score = 76.6 bits (189), Expect = 2e-17
 Identities = 22/64 (34%), Positives = 34/64 (53%)

Query: 1   MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRI 60
                 LTV  V +   +IA +TG+ S+ RKI  +  L+      EARYL R +  ++R+
Sbjct: 109 TLAFEELTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGLATPLEARYLTRLILNEMRL 168

Query: 61  GLAE 64
           G+ E
Sbjct: 169 GVGE 172

>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* Length = 621

 Score = 76.4 bits (188), Expect = 2e-17
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 2   FQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIG 61
                LTV  V+  L  +A  TG+ S   KI  +  L       EA++L+R + G+LR+G
Sbjct: 134 TSKESLTVDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVG 193

Query: 62  LAE 64
           + +
Sbjct: 194 IGD 196

>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1 Length = 688

 Score = 74.2 bits (182), Expect = 1e-16
 Identities = 39/64 (60%), Positives = 50/64 (78%)

Query: 1   MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRI 60
           M  P PLT + VF K +DIA +TG AS ++KID I+ LFVACRH EAR++ RSL+G+LR+
Sbjct: 162 MLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRL 221

Query: 61  GLAE 64
           GLAE
Sbjct: 222 GLAE 225

>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A* Length = 561

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 1   MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRI 60
            F   PLT+  V+  L  +A  TG+ S  +K+  +  LF+     EA+YL R++ G +R 
Sbjct: 105 SFFSQPLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFMDAEPLEAKYLARTILGTMRT 164

Query: 61  GLAE 64
           G+AE
Sbjct: 165 GVAE 168

>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens} Length = 579

 Score = 67.9 bits (166), Expect = 3e-14
 Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 1   MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRI 60
               + LT+  V + L  ++ +T +     +   +Q +   C   + + +IR +   L++
Sbjct: 112 PAAKSLLTIQEVDEFLLRLSKLTKEDE---QQQALQDIASRCTANDLKCIIRLIKHDLKM 168

Query: 61  GLAEH 65
                
Sbjct: 169 NSGAK 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	100.0
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	100.0
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	100.0
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	100.0
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	100.0
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	100.0
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	100.0
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	100.0
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	100.0
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	100.0
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	100.0
4htp_A	240	DNA ligase 4; helical domain, DNA binding domain,	97.39
1x9n_A	688	DNA ligase I; 5'-adenylated nicked DNA, protein-DN	96.85
3gde_A	558	DNA ligase; DNA-binding domain, adenylation domain	96.4
2hiv_A	621	Thermostable DNA ligase; ATP-dependent, open confo	96.05
3l2p_A	579	DNA ligase 3; DNA ligase, DNA repair, ATP-binding,	95.72
2cfm_A	561	Thermostable DNA ligase; protein-nucleotide comple	95.71

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9

Probab=100.00  E-value=1.4e-46  Score=324.49  Aligned_cols=142  Identities=27%  Similarity=0.377  Sum_probs=137.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN   83 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~   83 (147)
                      .+|+|+++|.++||++||++|++||+|+|++||..|.+..+...+|||+||+|||.+. .|+|||||||||||+||++|+
T Consensus       337 ~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~-~NsFEQlcINy~NEkLQq~F~  415 (697)
T 1lkx_A          337 SVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTTEKGPVIGILDIYGFEVFQ-NNSFEQLNINFCNEKLQQLFI  415 (697)
T ss_dssp             CCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCEEEEEECCCCCCCS-SBCHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeEEeeccccccccC-cCCHHHHHHHhhhhHHHHHHH
Confidence            4789999999999999999999999999999999998766668899999999999999 999999999999999999999


Q ss_pred             HhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      +++|..+|++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus       416 ~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~tD~~f~~kl~  478 (697)
T 1lkx_A          416 ELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSIC  478 (697)
T ss_dssp             HHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCChHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999986

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*

Probab=100.00  E-value=6.1e-46  Score=323.86  Aligned_cols=140  Identities=26%  Similarity=0.445  Sum_probs=135.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ   84 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~   84 (147)
                      .|+|+++|.++||+|||++|++||+|+|++||..|.. .....+|||+||+|||.+. .|+|||||||||||+||++|++
T Consensus       405 ~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~-~~~~~~IGvLDI~GFE~f~-~NsFEQlcINyaNEkLQq~F~~  482 (784)
T 2v26_A          405 VPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF-ETSSYFIGVLDIAGFEYFE-HNSFEQFCINYCNEKLQQFFNE  482 (784)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC-SCCSEEEEEEECCCCCCCS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccccceeeecccCCcccCC-cCCHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999965 4567899999999999999 9999999999999999999999


Q ss_pred             hhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          85 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        85 ~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      ++|..+|++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus       483 ~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~kl~  544 (784)
T 2v26_A          483 RILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVH  544 (784)
T ss_dssp             HHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             hhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999986

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=100.00  E-value=1e-45  Score=322.66  Aligned_cols=140  Identities=31%  Similarity=0.488  Sum_probs=135.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ   84 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~   84 (147)
                      +|+|+++|.++||+|||++|++||+|+|++||..|....+...+|||+||+|||.+. .|+|||||||||||+||++|++
T Consensus       389 ~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~-~NsFEQlcINyaNEkLQq~Fn~  467 (795)
T 1w7j_A          389 KPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFE-INSFEQFCINYANEKLQQQFNM  467 (795)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSEEEEEEECCCCCCCS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccceEEeeccCcccccC-cCCHHHHHHHhhhHHHHHHHHH
Confidence            689999999999999999999999999999999998766678899999999999999 9999999999999999999999


Q ss_pred             hhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          85 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        85 ~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      ++|..+|++|.+|||+|..++|.||++|+|||+++ .|||++|||||++|++||++|++||+
T Consensus       468 ~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~tD~~f~~kl~  528 (795)
T 1w7j_A          468 HVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLY  528 (795)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCCCChHHHHHHHH
Confidence            99999999999999999999999999999999976 99999999999999999999999986

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*

Probab=100.00  E-value=1.3e-45  Score=321.13  Aligned_cols=141  Identities=30%  Similarity=0.510  Sum_probs=134.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN   83 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~   83 (147)
                      .+|+|+++|.++||+|||++|++||+|+|++||+.|.+..+...+|||+||+|||.+. .|+|||||||||||+||++|+
T Consensus       412 ~~~~~~~qA~~~rdalAK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~-~NsFEQlCINyaNEkLQq~Fn  490 (783)
T 4db1_A          412 TKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETKQPRQYFIGVLDIAGFEIFD-FNSFEQLCINFTNEKLQQFFN  490 (783)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSEEEEEEECCCCCCCS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred             eeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEeccccccccc-cCCHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999998766677899999999999999 999999999999999999999


Q ss_pred             HhhhHHHHHHhhhhCcccccccc-cCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          84 QHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        84 ~~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      +++|..+|++|.+|||+|..++| .||++|+|||++ |.|||++|||||++|++||++|++||+
T Consensus       491 ~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD~tf~~kl~  553 (783)
T 4db1_A          491 HHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKATDMTFKAKLF  553 (783)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCHHHHHHHHH
T ss_pred             HHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCCCHHHHHHHHH
Confidence            99999999999999999999999 599999999995 899999999999999999999999986

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...

Probab=100.00  E-value=2.7e-45  Score=318.54  Aligned_cols=140  Identities=31%  Similarity=0.517  Sum_probs=134.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ   84 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~   84 (147)
                      +|+|+++|..+||++||++|++||+|+|++||..|....+ ..+|||+||+|||.+. .|+|||||||||||+||++|++
T Consensus       407 ~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~-~~~IGvLDI~GFE~F~-~NsFEQlCINyaNEkLQq~Fn~  484 (770)
T 1w9i_A          407 QHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK-AYFIGVLDIYGFEIFK-VNSFEQLCINYTNEKLQQFFNH  484 (770)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC-SEEEEEEECCCCCCCS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCeeeeccCccccccc-cCCHHHHHHHhhHHHHHHHHHh
Confidence            6899999999999999999999999999999999986555 8899999999999999 9999999999999999999999


Q ss_pred             hhhHHHHHHhhhhCcccccccc-cCchhHHHHhhcC-cccccccchhhhhcCCCCchHHHHhhh
Q psy5254          85 HVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        85 ~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~~-p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      ++|..+|++|.+|||.|..++| .||++|+|||+++ |.|||++|||||++|++||++|++||+
T Consensus       485 ~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~~tD~~f~~kL~  548 (770)
T 1w9i_A          485 HMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLH  548 (770)
T ss_dssp             HHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHHHHHHHHH
T ss_pred             hhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCChHHHHHHHH
Confidence            9999999999999999999999 5999999999974 999999999999999999999999975

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=100.00  E-value=4.6e-45  Score=319.91  Aligned_cols=140  Identities=29%  Similarity=0.524  Sum_probs=134.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ   84 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~   84 (147)
                      +|+|+++|.++||++||++|++||+|+|++||..|....+...+|||+||+|||.+. .|+|||||||||||+||++|++
T Consensus       412 ~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~-~NsFEQlcINyaNEkLQq~Fn~  490 (837)
T 1kk8_A          412 KGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFD-FNSFEQLCINYTNERLQQFFNH  490 (837)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCS-SBCHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcceEEEEecCCccccc-cccHHHHHHHHhhHHHHHHHHH
Confidence            689999999999999999999999999999999998655677899999999999999 9999999999999999999999


Q ss_pred             hhhHHHHHHhhhhCcccccccc-cCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          85 HVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        85 ~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      ++|..+|++|.+|||+|..++| .||++|+|||++ |.|||++|||||++|++||++|++||+
T Consensus       491 ~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~tD~tf~~kl~  552 (837)
T 1kk8_A          491 HMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKADDKSFQDKLY  552 (837)
T ss_dssp             HHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCHHHHHHHHH
T ss_pred             hhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCChHHHHHHHH
Confidence            9999999999999999999999 599999999996 899999999999999999999999975

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=100.00  E-value=5.6e-45  Score=324.67  Aligned_cols=141  Identities=26%  Similarity=0.441  Sum_probs=135.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN   83 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~   83 (147)
                      ..|+++++|..+||+||+++|++||+|+|+.||..|.. .....+|||+||+|||.+. .|+|||||||||||+||++|+
T Consensus       408 ~~~l~~~qA~~~rDaLAK~LY~rLF~wiV~~IN~~l~~-~~~~~~IGILDI~GFE~f~-~NsFEQLCINyaNEkLQq~Fn  485 (1052)
T 4anj_A          408 KVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF-ETSSYFIGVLDIAGFEYFE-HNSFEQFCINYCNEKLQQFFN  485 (1052)
T ss_dssp             CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC-SCCSEEEEEEECCCCCCCS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccccceEEEEecCCCcccc-cCcHHHHHHHHHHHHHHHHHH
Confidence            36799999999999999999999999999999999976 4567899999999999999 999999999999999999999


Q ss_pred             HhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      +++|..+|++|..|||+|..++|.||++|+|||+++|.|||++|||||++|++||++|++||+
T Consensus       486 ~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~kl~  548 (1052)
T 4anj_A          486 ERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVH  548 (1052)
T ss_dssp             HHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999986

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=100.00  E-value=1.6e-44  Score=323.63  Aligned_cols=140  Identities=31%  Similarity=0.488  Sum_probs=135.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ   84 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~   84 (147)
                      .|+|+++|.++||+||+++|++||+|+|+.||..|.+..+...+|||+||||||.|. .|+|||||||||||+||++|++
T Consensus       389 ~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f~-~NsFEQlcINy~NEkLQq~F~~  467 (1080)
T 2dfs_A          389 KPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFE-INSFEQFCINYANEKLQQQFNM  467 (1080)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCCS-SBCHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCceEEeeccCCccccC-cCCHHHHHHHhhhHHHHHHHHH
Confidence            689999999999999999999999999999999998766678899999999999999 9999999999999999999999


Q ss_pred             hhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          85 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        85 ~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      ++|..+|++|..|||+|..++|.||++|+|||+++ .|||++|||||++|++||++|++||+
T Consensus       468 ~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f~~kl~  528 (1080)
T 2dfs_A          468 HVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLY  528 (1080)
T ss_dssp             HHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred             HhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCCChHHHHHHHH
Confidence            99999999999999999999999999999999976 99999999999999999999999986

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*

Probab=100.00  E-value=3.8e-44  Score=319.21  Aligned_cols=141  Identities=30%  Similarity=0.456  Sum_probs=135.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCc-CcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRH-CEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN   83 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~-~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~   83 (147)
                      +|+|+++|.++||++|+++|++||+|+|++||..|....+ ...+|||+||+|||.+. .|+|||||||||||+||++|+
T Consensus       384 ~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~~IgvLDI~GFE~f~-~NsfEQlcINy~NEkLQq~F~  462 (995)
T 2ycu_A          384 KAQTKEQADFALEALAKATYERLFRWLVLRLNRALDRSPRQGASFLGILDIAGFEIFQ-LNSFEQLCINYTNEKLQQLFN  462 (995)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCSEEEEEEECCCBCCCS-SBCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEeccccccccc-cchHHHHHHHhhHHHHHHHHH
Confidence            6899999999999999999999999999999999986554 67899999999999999 999999999999999999999


Q ss_pred             HhhhHHHHHHhhhhCcccccccc-cCchhHHHHhhc--CcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          84 QHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        84 ~~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~--~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      +++|..+|++|..|||+|..++| .||++|+|||++  +|.|||++|||||++|++||++|++||+
T Consensus       463 ~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~tD~~f~~kl~  528 (995)
T 2ycu_A          463 HTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVA  528 (995)
T ss_dssp             HHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCCHHHHHHHHH
T ss_pred             HhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCCchHHHHHHHH
Confidence            99999999999999999999999 699999999997  3899999999999999999999999986

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=100.00  E-value=1.7e-43  Score=315.14  Aligned_cols=140  Identities=31%  Similarity=0.515  Sum_probs=134.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ   84 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~   84 (147)
                      +|+|+++|.++||++|+++|++||+|+|++||..|.... ...+|||+||+|||.+. .|+|||||||||||+||++|++
T Consensus       407 ~~~~~~qa~~~rdalak~lY~~LF~wlV~~IN~~l~~~~-~~~~IgvLDI~GFE~f~-~NsfEQlcINy~NEkLQq~F~~  484 (1010)
T 1g8x_A          407 QHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSER-KAYFIGVLDISGFEIFK-VNSFEQLCINYTNEKLQQFFNH  484 (1010)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS-CSEEEEEEECCCCCCCS-SBCHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cCceeeeccCcccccCC-cCcHHHHHHHhhhHHHHHHHHH
Confidence            689999999999999999999999999999999998644 67899999999999999 9999999999999999999999


Q ss_pred             hhhHHHHHHhhhhCcccccccc-cCchhHHHHhhc-CcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          85 HVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        85 ~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~-~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      ++|..+|++|..|||.|..++| .||++|+|||++ +|.|||++|||||++|++||++|++||+
T Consensus       485 ~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~td~~f~~kl~  548 (1010)
T 1g8x_A          485 HMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLH  548 (1010)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHHHHHHHHH
T ss_pred             HhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCCChHHHHHHHH
Confidence            9999999999999999999999 599999999997 4999999999999999999999999975

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=100.00  E-value=2.3e-43  Score=319.14  Aligned_cols=142  Identities=30%  Similarity=0.475  Sum_probs=131.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcC-CcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVAC-RHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYF   82 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~-~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~   82 (147)
                      ..|+|+++|..+||+||+++|++||+|+|+.||..|.+. .+...+|||+||||||.|. .|+|||||||||||+||++|
T Consensus       414 ~~~~~~~~a~~~rdalak~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~-~NsfeQlciNy~nEkLq~~f  492 (1184)
T 1i84_S          414 QKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFE-INSFEQLCINYTNEKLQQLF  492 (1184)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCS-SBCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCC-cchHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999864 3567899999999999999 99999999999999999999


Q ss_pred             HHhhhHHHHHHhhhhCcccccccc-cCchhHHHHhhcC--cccccccchhhhhcCCCCchHHHHhhh
Q psy5254          83 NQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        83 ~~~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~~--p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      ++++|..+|++|..|||.|.+++| .||++|+|||+++  |+|||++|||||++|++||.+|++||+
T Consensus       493 ~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~td~~~~~kl~  559 (1184)
T 1i84_S          493 NHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLI  559 (1184)
T ss_dssp             HHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCCHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCChHHHHHHHH
Confidence            999999999999999999999999 6999999999963  349999999999999999999999986

>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*

Probab=97.39  E-value=3.2e-05  Score=58.89  Aligned_cols=62  Identities=23%  Similarity=0.345  Sum_probs=57.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEH   65 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~   65 (147)
                      +.+||+++|++.++.||...++++...+.+.+..++.++++.|.+++++.+.|..|+|...+
T Consensus       140 ~~~LTv~~V~~~L~~IA~~~g~~s~~~k~~~l~~Ll~~~t~~E~k~liRiil~~lriG~~e~  201 (240)
T 4htp_A          140 KGSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQ  201 (240)
T ss_dssp             SCCCBHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHTCCCCSSCHH
T ss_pred             CCCcCHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHCCHHHHHHHHHHHhcccccCccHh
Confidence            46899999999999999999999999999999999999999999999999999999996443

>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1

Probab=96.85  E-value=0.00024  Score=61.49  Aligned_cols=63  Identities=60%  Similarity=1.032  Sum_probs=59.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254           2 FQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE   64 (147)
Q Consensus         2 ~~~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~   64 (147)
                      |+|.+||+++|++.++.||+..+.++...+++.|..++.++++.+.+++++-+.|-.|+|...
T Consensus       163 ~~~~~lTv~~V~~~L~~ia~~~g~~s~~~k~~~l~~ll~~~~~~E~k~l~Rli~~~lRiG~~~  225 (688)
T 1x9n_A          163 LPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAE  225 (688)
T ss_dssp             CCCSCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHCCSTHHHHHHHHHTTCCCCSCCH
T ss_pred             CCCCCCcHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHhcccccCccH
Confidence            567899999999999999999999999999999999999999999999999999999998633

>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}

Probab=96.40  E-value=0.00058  Score=57.82  Aligned_cols=61  Identities=36%  Similarity=0.552  Sum_probs=57.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE   64 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~   64 (147)
                      +.+||+.+|++.++.||+..++++...+.+.|..++.++++.|.+++++.+.|-.|+|...
T Consensus       112 ~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l~~~~~~~E~~~l~rli~~~lRiG~~~  172 (558)
T 3gde_A          112 FEELTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGLATPLEARYLTRLILNEMRLGVGE  172 (558)
T ss_dssp             CCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTCCCSSCCH
T ss_pred             CCCCcHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHhccccccccH
Confidence            5789999999999999999999999999999999999999999999999999999999644

>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*

Probab=96.05  E-value=0.00094  Score=57.20  Aligned_cols=62  Identities=32%  Similarity=0.544  Sum_probs=57.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254           3 QPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE   64 (147)
Q Consensus         3 ~~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~   64 (147)
                      ++.+||+++|++.++.||+..++++...+++.|..++.++++.+.+++++.+.|-.|+|...
T Consensus       135 ~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~~~~E~k~l~Rli~~~lRiG~~~  196 (621)
T 2hiv_A          135 SKESLTVDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGD  196 (621)
T ss_dssp             -CCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCCCCCH
T ss_pred             CCCCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCccCccH
Confidence            46889999999999999999999999999999999999999999999999999999998643

>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}

Probab=95.72  E-value=0.002  Score=54.72  Aligned_cols=58  Identities=17%  Similarity=0.300  Sum_probs=51.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE   64 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~   64 (147)
                      +.+||+.+|++.++.||+..++++...   .+..++.+|++.|.+++++.+.|-.++|..+
T Consensus       115 ~~~LTv~~V~~~L~~ia~~~g~~sq~~---~l~~l~~~~~~~E~k~l~R~i~~~lriG~~e  172 (579)
T 3l2p_A          115 KSLLTIQEVDEFLLRLSKLTKEDEQQQ---ALQDIASRCTANDLKCIIRLIKHDLKMNSGA  172 (579)
T ss_dssp             SCCCBHHHHHHHHHHHHTCCSHHHHHH---HHHHHHTTCCSHHHHHHHHHHTTCCSSSCCH
T ss_pred             CCCccHHHHHHHHHHHHhccCcHHHHH---HHHHHHHhCCHHHHHHHHHHHHhhhhcccch
Confidence            468999999999999999999998874   5667888999999999999999999988643

>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*

Probab=95.71  E-value=0.0017  Score=54.97  Aligned_cols=60  Identities=37%  Similarity=0.677  Sum_probs=56.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAE   64 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~   64 (147)
                      .+||+.+|++.++.||+..++++...+++.|..++.++++.+.+++++-+.|-.|+|...
T Consensus       109 ~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~~~~e~~~l~rli~~~lriG~~~  168 (561)
T 2cfm_A          109 QPLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFMDAEPLEAKYLARTILGTMRTGVAE  168 (561)
T ss_dssp             CCCBHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCCCCH
T ss_pred             CCCcHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHhccccccccH
Confidence            689999999999999999999999999999999999999999999999999999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d1lkxa_	684	c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli	5e-17
d1x9na1	272	a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (	6e-16
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	2e-15
d1br2a2	710	c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick	3e-15
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	3e-15
d1w7ja2	730	c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick	7e-15
d1d0xa2	712	c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain	7e-14

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

 Score = 74.3 bits (182), Expect = 5e-17
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query: 65  HFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 124
            FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL+
Sbjct: 389 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 448

Query: 125 CVLDDQAKF 133
            +LD+    
Sbjct: 449 SLLDEACLI 457

>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: All alpha proteins
fold: ATP-dependent DNA ligase DNA-binding domain
superfamily: ATP-dependent DNA ligase DNA-binding domain
family: ATP-dependent DNA ligase DNA-binding domain
domain: DNA ligase I (LIG1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 6e-16
 Identities = 39/64 (60%), Positives = 50/64 (78%)

Query: 1   MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRI 60
           M  P PLT + VF K +DIA +TG AS ++KID I+ LFVACRH EAR++ RSL+G+LR+
Sbjct: 132 MLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRL 191

Query: 61  GLAE 64
           GLAE
Sbjct: 192 GLAE 195

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 70.1 bits (171), Expect = 2e-15
 Identities = 32/70 (45%), Positives = 43/70 (61%)

Query: 64  EHFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 123
             FEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+
Sbjct: 424 NSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGI 483

Query: 124 LCVLDDQAKF 133
             +L+++  F
Sbjct: 484 FSILEEECMF 493

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 69.4 bits (169), Expect = 3e-15
 Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 65  HFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPN 121
            FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E    P 
Sbjct: 397 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPP 456

Query: 122 GLLCVLDDQAKFSLIPPDDILCRYF 146
           G+L +LD++  F        + +  
Sbjct: 457 GVLALLDEECWFPKATDTSFVEKLI 481

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 69.0 bits (168), Expect = 3e-15
 Identities = 34/69 (49%), Positives = 44/69 (63%)

Query: 65  HFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 124
            FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+L
Sbjct: 423 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGIL 482

Query: 125 CVLDDQAKF 133
            +L+++  F
Sbjct: 483 SILEEECMF 491

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

 Score = 68.2 bits (166), Expect = 7e-15
 Identities = 39/69 (56%), Positives = 47/69 (68%), Gaps = 1/69 (1%)

Query: 65  HFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 124
            FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  G+L
Sbjct: 386 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVL 444

Query: 125 CVLDDQAKF 133
            +LD++ K 
Sbjct: 445 DLLDEECKM 453

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 65.5 bits (159), Expect = 7e-14
 Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 2/84 (2%)

Query: 65  HFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNG 122
            FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G +P G
Sbjct: 418 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 477

Query: 123 LLCVLDDQAKFSLIPPDDILCRYF 146
           +L +LD+Q+ F     + ++ +  
Sbjct: 478 ILALLDEQSVFPNATDNTLITKLH 501

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	100.0
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	100.0
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	100.0
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	100.0
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	100.0
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	100.0
d1x9na1	272	DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId:	98.1

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=100.00  E-value=1.8e-41  Score=290.98  Aligned_cols=142  Identities=27%  Similarity=0.377  Sum_probs=137.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN   83 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~   83 (147)
                      ..|+++++|...||++|+++|+++|+|+|+.||..|.+......+|+|+|+||||.+. .|+|||||||||||+||++|+
T Consensus       329 ~~~~~~~~A~~~rdalak~LY~~LF~wiv~~IN~~L~~~~~~~~~IgiLDifGFE~f~-~NsfEQLcINyaNEkLq~~f~  407 (684)
T d1lkxa_         329 SVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTTEKGPVIGILDIYGFEVFQ-NNSFEQLNINFCNEKLQQLFI  407 (684)
T ss_dssp             CCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCEEEEEECCCCCCCS-SBCHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcccceEEEeeccCCcCCC-CCcHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999998877778899999999999999 999999999999999999999


Q ss_pred             HhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      +++|..++++|..|||+|..++|.||++|++||+++|.||+++|||||++|++||++|++|++
T Consensus       408 ~~if~~e~~~Y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~tD~~~l~kl~  470 (684)
T d1lkxa_         408 ELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSIC  470 (684)
T ss_dssp             HHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCCHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhccCCCCCCCcCCchHHHHHHHhccchHHHHhHHHhcCCCCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999985

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=2.9e-41  Score=290.52  Aligned_cols=140  Identities=30%  Similarity=0.513  Sum_probs=127.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ   84 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~   84 (147)
                      +|+++++|.++||++|+++|++||+|+|+.||..|++ .....+|+|+|++|||.+. .|+|||||||||||+||++|++
T Consensus       360 ~~l~~~~A~~~rdalaK~LY~~LF~wiV~~IN~~l~~-~~~~~~IgiLDifGFE~f~-~NsfEQLcINyaNEkLQ~~f~~  437 (712)
T d1d0xa2         360 QHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQ-ERKAYFIGVLDISGFEIFK-VNSFEQLCINYTNEKLQQFFNH  437 (712)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-SCCSEEEEEEECCCCCCCS-SBCHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-Ccccceeeeeecccccccc-cCcHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999976 4557899999999999999 9999999999999999999999


Q ss_pred             hhhHHHHHHhhhhCcccccccc-cCchhHHHHhhc-CcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          85 HVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        85 ~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~-~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      ++|..++++|.+|||.|..++| .||++|++||++ +|.|||++|||||++|++||++|++||+
T Consensus       438 ~~f~~eq~eY~~EgI~~~~i~~~~dn~~~~~Li~~k~p~Gll~lLdee~~~~~~td~~~l~kl~  501 (712)
T d1d0xa2         438 HMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLH  501 (712)
T ss_dssp             HHHHHHHHHHHHHTCC--------CHHHHHHHHHCTTTTCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCCcccccCCCcHHHHHHHhccCCCcHHHHhHHHhcCCCCChHHHHHHHH
Confidence            9999999999999999999999 599999999986 4799999999999999999999999985

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=100.00  E-value=5.8e-41  Score=289.59  Aligned_cols=140  Identities=31%  Similarity=0.479  Sum_probs=135.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ   84 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~   84 (147)
                      .|+++++|.++||++|+++|.+||+|+|+.||..|.+......+|+|+|+||||.+. .|+|||||||||||+||++|++
T Consensus       327 ~~~~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~~~~~~IgiLDifGFE~f~-~NsfEQLcINy~NEkLq~~f~~  405 (730)
T d1w7ja2         327 KPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFE-INSFEQFCINYANEKLQQQFNM  405 (730)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSEEEEEEECCCCCCCS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccceeeccCCcccC-cccHHHHHHhhhHHHHHHHHHH
Confidence            579999999999999999999999999999999998877777899999999999998 9999999999999999999999


Q ss_pred             hhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          85 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        85 ~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      ++|..++++|.+|||+|+.++|.||.+|++|+++ |.|||++|||||++|+++|++|++|++
T Consensus       406 ~~F~~e~~~y~~EgI~~~~i~~~dN~~~l~Li~~-~~gil~lLdee~~~~~~td~~~l~kl~  466 (730)
T d1w7ja2         406 HVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEA-KMGVLDLLDEECKMPKGSDDTWAQKLY  466 (730)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHS-TTSHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCcccCcCCChhHHhhhhc-cccHHHHhHHhccCCCCchHHHHHHHH
Confidence            9999999999999999999999999999999995 699999999999999999999999985

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=100.00  E-value=7.8e-41  Score=290.74  Aligned_cols=142  Identities=27%  Similarity=0.434  Sum_probs=135.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFN   83 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~   83 (147)
                      .+|+|+++|.++||++|+++|++||+|+|+.||..+.+..+....|+|+|+||||.+. .|+|||||||||||+||++|+
T Consensus       365 ~~~l~~~~a~~~rdalaK~LY~~LF~wiV~~IN~~l~~~~~~~~~IgILDifGFE~f~-~NsfEQLcINyaNEkLQq~f~  443 (794)
T d2mysa2         365 TKGETVSEVHNSVGALAKAVYEKMFLWMVIRINQQLDTKQPRQYFIGVLDIAGFEIFD-FNSFEQLCINFTNEKLQQFFN  443 (794)
T ss_dssp             BCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCEEEEEEEEECCCCCS-SBCHHHHHHHHHHHHHHHHHH
T ss_pred             eeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceEEEEeecccccccc-cccHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999998878888999999999999999 999999999999999999999


Q ss_pred             HhhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          84 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        84 ~~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      +++|..++++|.+|||+|..++|.||..+++++..+|.|||++|||||++|++||++|++||+
T Consensus       444 ~~~F~~Eq~~Y~~EgI~~~~i~~~~n~~~~~~l~~kp~Gil~lLdee~~~~~~td~~f~~kl~  506 (794)
T d2mysa2         444 HHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLY  506 (794)
T ss_dssp             HHHHHHHHHHHHHTCCCCCCCCSTHHHHHHHHHHHSTTSHHHHHHHHTTCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcccCCCCCCHHHHHHHHhCcccHHHHHHHhccCccccHHHHHHHHH
Confidence            999999999999999999999998777777777778999999999999999999999999985

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=100.00  E-value=1.7e-40  Score=288.40  Aligned_cols=141  Identities=27%  Similarity=0.431  Sum_probs=134.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHHHH
Q psy5254           5 APLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYFNQ   84 (147)
Q Consensus         5 ~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~~~   84 (147)
                      +|+++++|.++||++|+++|++||+|+|+.||..|.+.......|||+|+||||.+. .|+|||||||||||+||++|++
T Consensus       364 ~~l~~~~a~~~rdalaK~lY~~LF~wIV~~IN~~L~~~~~~~~~IgILDIfGFE~f~-~NsfEQLcINyaNEkLq~~f~~  442 (789)
T d1kk8a2         364 KGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFD-FNSFEQLCINYTNERLQQFFNH  442 (789)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCS-SBCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcceEEEEeecccceecC-cCcHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999998776777889999999999999 9999999999999999999999


Q ss_pred             hhhHHHHHHhhhhCcccccccccCchhHHHHhhcCcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          85 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        85 ~~~~~~~~~~~~Egi~~~~~~~~dn~~~~~li~~~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      ++|..++++|..|||+|..++|.||.++++++..+|.|||++|||||.+|++||++|++|++
T Consensus       443 ~~f~~eq~~Y~~EgI~~~~i~~~~n~~~~~~l~~~~~Gll~lLdee~~~~~~td~~~l~kl~  504 (789)
T d1kk8a2         443 HMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILSILEEECMFPKADDKSFQDKLY  504 (789)
T ss_dssp             HHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHSTTSHHHHHHHHTTCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCccCCCcCCCHHHHHHHHcCCccHHHHHHhhhcCCCCCHHHHHHHHH
Confidence            99999999999999999999998887777777778999999999999999999999999985

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=100.00  E-value=2.1e-40  Score=285.25  Aligned_cols=142  Identities=29%  Similarity=0.473  Sum_probs=127.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCC-cCcceeeeeeccchhhhhhhHHHHHHHhhhhhhHHHHHH
Q psy5254           4 PAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACR-HCEARYLIRSLAGKLRIGLAEHFEQLCINYANEHLQYYF   82 (147)
Q Consensus         4 ~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~-~~~~~i~ildi~Gfe~~~~~~~~eql~iN~~nE~l~~~~   82 (147)
                      .+|+++++|..+||++|+++|+++|+|+|+.||..|.+.. .....|+|+|+||||.+. .|+|||||||||||+||++|
T Consensus       336 ~~~l~~~~A~~~rdalak~LY~~LF~wiV~~iN~~l~~~~~~~~~~IgiLDifGFE~f~-~NsfEQLcINy~NE~Lq~~f  414 (710)
T d1br2a2         336 QKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFE-INSFEQLCINYTNEKLQQLF  414 (710)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CEEEEEEECCCCCCCS-SBCHHHHHHHHHHHHHHHHH
T ss_pred             ecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeeEEeecCccccC-cccHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999997643 345689999999999999 99999999999999999999


Q ss_pred             HHhhhHHHHHHhhhhCcccccccc-cCchhHHHHhhc--CcccccccchhhhhcCCCCchHHHHhhh
Q psy5254          83 NQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQAKFSLIPPDDILCRYF  146 (147)
Q Consensus        83 ~~~~~~~~~~~~~~Egi~~~~~~~-~dn~~~~~li~~--~p~Gll~lLdee~~~p~~td~~fl~kl~  146 (147)
                      ++++|..++++|..|||+|..++| .||++|++||++  +|.|||++|||||++|++||++|++||+
T Consensus       415 ~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~~~lie~~~~p~Gil~lLdee~~~p~~td~~~l~kl~  481 (710)
T d1br2a2         415 NHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLI  481 (710)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCCCCCCHHHHHHHHCCSSSCCHHHHHHHHC----CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcccccccccCCcchhhHHHhccCCCcchhhhhhhhhcCCCCchHHHHHHHH
Confidence            999999999999999999999999 599999999996  6889999999999999999999999986

>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: ATP-dependent DNA ligase DNA-binding domain
superfamily: ATP-dependent DNA ligase DNA-binding domain
family: ATP-dependent DNA ligase DNA-binding domain
domain: DNA ligase I (LIG1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.8e-07  Score=69.77  Aligned_cols=65  Identities=60%  Similarity=1.029  Sum_probs=60.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhcCCcCcceeeeeeccchhhhhhhHH
Q psy5254           1 MFQPAPLTVATVFDKLKDIAGMTGQASVSRKIDKIQSLFVACRHCEARYLIRSLAGKLRIGLAEH   65 (147)
Q Consensus         1 ~~~~~~Ltv~~v~~~~~~ia~~ly~~lf~~iv~~in~~L~~~~~~~~~i~ildi~Gfe~~~~~~~   65 (147)
                      ++.|.|||+.+|++.++.||+..|+++...+++.|-+++..+++.|.+++++-+.|-.|+|...+
T Consensus       132 ~~~~~~LTv~~V~~~L~~IA~~sG~~s~~~K~~~i~~Ll~~~~~~E~kyliR~l~g~LRIGv~e~  196 (272)
T d1x9na1         132 MLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQ  196 (272)
T ss_dssp             -CCCSCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHCCSTHHHHHHHHHTTCCCCSCCHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhccccHH
Confidence            36789999999999999999999999999999999999999999999999999999999996443