Psyllid ID: psy5257

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
MTGNLSASSNDTKAPVFASAAGEYFSRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKVRKGNEDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLGVVIASSSVIMIPGMAVYQMIITPGTFMQDQEKTSRSSLV
ccccccccccccccccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEcHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccEEEEEHHHHcccHHHHHHHHHHHHHHHHHEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccc
cccccccccccccccccccHHHHHHHccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccEEEEEcHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccc
mtgnlsassndtkapvFASAAGEYFSRYILEMQhstglhdlgyIKWDMALCLLAVYLICYFSMWkgistsgkvrkgnEDAILTSLINSCTSFIAGFVIFSVLGYMAHisgvpinevavegpglvfIVYPAAIATMPGSIFWSLIFFMMLLTLgldssfggSEAIITALsdefplignnREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLttyeplsyesyvypqWANVLGVVIASSSVIMIPGMAVYQMIitpgtfmqdqektsrsslv
mtgnlsassndtkapvFASAAGEYFSRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKVRKGNEDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLGVVIASSSVIMIPGMAVYQMIITPGtfmqdqektsrsslv
MTGNLSASSNDTKAPVFASAAGEYFSRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKVRKGNEDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLGVVIASSSVIMIPGMAVYQMIITPGTFMQDQEKTSRSSLV
***************VFASAAGEYFSRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKVRKGNEDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLGVVIASSSVIMIPGMAVYQMIITPGTF*************
**G****SSNDTK*PVFASAAGEYFSRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKVRKGNEDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLGVVIASSSVIMIPGMAVYQMIITPGTFMQDQEKTSRSSLV
************KAPVFASAAGEYFSRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKVRKGNEDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLGVVIASSSVIMIPGMAVYQMIITPGTFM************
***************VFASAAGEYFSRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKVRKGNEDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLGVVIASSSVIMIPGMAVYQMIITPGTFMQDQEKTSRSS**
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
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MTGNLSASSNDTKAPVFASAAGEYFSRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKVRKGNEDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLGVVIASSSVIMIPGMAVYQMIITPGTFMQDQEKTSRSSLV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query295 2.2.26 [Sep-21-2011]
Q03614615 Sodium-dependent dopamine yes N/A 0.725 0.347 0.439 1e-52
P23977619 Sodium-dependent dopamine yes N/A 0.705 0.336 0.421 2e-48
Q01959620 Sodium-dependent dopamine yes N/A 0.705 0.335 0.429 2e-48
Q61327619 Sodium-dependent dopamine yes N/A 0.705 0.336 0.421 2e-48
Q9GJT6620 Sodium-dependent dopamine N/A N/A 0.705 0.335 0.429 2e-48
O55192617 Sodium-dependent noradren no N/A 0.701 0.335 0.418 4e-47
P51143615 Sodium-dependent noradren yes N/A 0.701 0.336 0.410 2e-46
P27922693 Sodium-dependent dopamine no N/A 0.705 0.300 0.412 3e-46
P23975617 Sodium-dependent noradren no N/A 0.701 0.335 0.410 4e-46
A7Y2X0790 Sodium- and chloride-depe N/A N/A 0.701 0.262 0.396 9e-45
>sp|Q03614|NTDO_CAEEL Sodium-dependent dopamine transporter OS=Caenorhabditis elegans GN=dat-1 PE=2 SV=3 Back     alignment and function desciption
 Score =  206 bits (525), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 112/255 (43%), Positives = 150/255 (58%), Gaps = 41/255 (16%)

Query: 79  DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 138
           DA+ TS IN  TSF++GFVIFSVLGYM+  SG PI  VA EGPGLVF+VYP A++TMP +
Sbjct: 338 DALFTSFINCATSFLSGFVIFSVLGYMSCKSGKPIEAVAQEGPGLVFVVYPEALSTMPYA 397

Query: 139 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 198
            FWS++FF+ML+TLGLDSSFGGSEAIIT LSDEFP++  NRE+F+ CLF+ Y V+G+A C
Sbjct: 398 PFWSVLFFLMLMTLGLDSSFGGSEAIITGLSDEFPILKKNREVFVGCLFAFYMVIGIAMC 457

Query: 199 AQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLT---------------------- 236
            +GG      L  Y   + +LIAV  E++    +YGL                       
Sbjct: 458 TEGGILIMEWLIIYGTTWGLLIAVFCEAMVIAYIYGLRQFVHDVKEMMGFRPGNYWKFCW 517

Query: 237 -----------------TYEPLSYESYVYPQWANVLGVVIASSSVIMIPGMAVYQMIITP 279
                             Y+ L+Y+ Y YP  ANV+G++ A S    IP + +Y+ +   
Sbjct: 518 SCAAPFILLSMITSNFINYQALTYQDYTYPTAANVIGIIFALSGASFIPLVGIYKFVNAR 577

Query: 280 GTFMQDQEKTSRSSL 294
           G  +   EK  R ++
Sbjct: 578 GNTI--SEKWQRVTM 590
Terminates the action of dopamine by its high affinity sodium-dependent reuptake into presynaptic terminals.
Caenorhabditis elegans (taxid: 6239)
>sp|P23977|SC6A3_RAT Sodium-dependent dopamine transporter OS=Rattus norvegicus GN=Slc6a3 PE=2 SV=1 Back     alignment and function description
>sp|Q01959|SC6A3_HUMAN Sodium-dependent dopamine transporter OS=Homo sapiens GN=SLC6A3 PE=1 SV=1 Back     alignment and function description
>sp|Q61327|SC6A3_MOUSE Sodium-dependent dopamine transporter OS=Mus musculus GN=Slc6a3 PE=1 SV=2 Back     alignment and function description
>sp|Q9GJT6|SC6A3_MACFA Sodium-dependent dopamine transporter OS=Macaca fascicularis GN=SLC6A3 PE=2 SV=1 Back     alignment and function description
>sp|O55192|SC6A2_MOUSE Sodium-dependent noradrenaline transporter OS=Mus musculus GN=Slc6a2 PE=2 SV=2 Back     alignment and function description
>sp|P51143|SC6A2_BOVIN Sodium-dependent noradrenaline transporter OS=Bos taurus GN=SLC6A2 PE=2 SV=1 Back     alignment and function description
>sp|P27922|SC6A3_BOVIN Sodium-dependent dopamine transporter OS=Bos taurus GN=SLC6A3 PE=2 SV=1 Back     alignment and function description
>sp|P23975|SC6A2_HUMAN Sodium-dependent noradrenaline transporter OS=Homo sapiens GN=SLC6A2 PE=1 SV=1 Back     alignment and function description
>sp|A7Y2X0|SC6A5_XENLA Sodium- and chloride-dependent glycine transporter 2 OS=Xenopus laevis GN=slc6a5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
307189955 682 Sodium-dependent dopamine transporter [C 0.701 0.303 0.695 8e-89
387762416 612 high-affinity dopamine transporter [Gryl 0.701 0.338 0.691 9e-89
242006175 483 tryptophan transporter, putative [Pedicu 0.715 0.436 0.664 4e-87
383860122 643 PREDICTED: sodium-dependent dopamine tra 0.701 0.321 0.682 5e-86
380013228 647 PREDICTED: sodium-dependent dopamine tra 0.701 0.319 0.674 3e-85
322799007 589 hypothetical protein SINV_10387 [Solenop 0.701 0.351 0.678 4e-85
170049842 559 norepinephrine/norepinephrine transporte 0.711 0.375 0.678 7e-85
158285793 665 AGAP007367-PA [Anopheles gambiae str. PE 0.701 0.311 0.686 7e-85
195026306 627 GH20642 [Drosophila grimshawi] gi|193902 0.701 0.330 0.670 1e-84
332028332 696 Sodium-dependent dopamine transporter [A 0.701 0.297 0.670 1e-84
>gi|307189955|gb|EFN74191.1| Sodium-dependent dopamine transporter [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 171/246 (69%), Positives = 193/246 (78%), Gaps = 39/246 (15%)

Query: 78  EDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPG 137
           +DA+LTSLINS TSF+AGFVIFSVLGYMAH SG  I +VA EGPGLVFIVYPAAIATMPG
Sbjct: 367 KDALLTSLINSATSFVAGFVIFSVLGYMAHASGKSIQDVATEGPGLVFIVYPAAIATMPG 426

Query: 138 SIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLAS 197
           S+FW+LIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIF+ACLF+LYF+VGLAS
Sbjct: 427 SMFWALIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFVACLFTLYFLVGLAS 486

Query: 198 CAQGGFYFFHLLDKYAAGYSILIAVLFESIA----------------------------- 228
           C+QGGFYFFHLLD+YAAGYS+L AVL E+IA                             
Sbjct: 487 CSQGGFYFFHLLDRYAAGYSMLFAVLAETIAVSWIYGTDRFCADIKDMISFRPGIYWRVC 546

Query: 229 ----------FIIVYGLTTYEPLSYESYVYPQWANVLGVVIASSSVIMIPGMAVYQMIIT 278
                     FIIVYGL  YEPLSYE Y+YP WANVLG +IASSS++MIPGMA+Y++I T
Sbjct: 547 WKFVAPLFLMFIIVYGLMGYEPLSYEGYIYPVWANVLGWLIASSSIVMIPGMAIYKIITT 606

Query: 279 PGTFMQ 284
           PG+F+Q
Sbjct: 607 PGSFVQ 612

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|387762416|dbj|BAM15639.1| high-affinity dopamine transporter [Gryllus bimaculatus] Back     alignment and taxonomy information
>gi|242006175|ref|XP_002423929.1| tryptophan transporter, putative [Pediculus humanus corporis] gi|212507199|gb|EEB11191.1| tryptophan transporter, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|383860122|ref|XP_003705540.1| PREDICTED: sodium-dependent dopamine transporter-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380013228|ref|XP_003690667.1| PREDICTED: sodium-dependent dopamine transporter-like [Apis florea] Back     alignment and taxonomy information
>gi|322799007|gb|EFZ20467.1| hypothetical protein SINV_10387 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|170049842|ref|XP_001870937.1| norepinephrine/norepinephrine transporter [Culex quinquefasciatus] gi|167871543|gb|EDS34926.1| norepinephrine/norepinephrine transporter [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|158285793|ref|XP_308462.4| AGAP007367-PA [Anopheles gambiae str. PEST] gi|157020163|gb|EAA04277.4| AGAP007367-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|195026306|ref|XP_001986227.1| GH20642 [Drosophila grimshawi] gi|193902227|gb|EDW01094.1| GH20642 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|332028332|gb|EGI68379.1| Sodium-dependent dopamine transporter [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
FB|FBgn0034136631 DAT "Dopamine transporter" [Dr 0.545 0.255 0.795 8.2e-108
WB|WBGene00000934615 dat-1 [Caenorhabditis elegans 0.542 0.260 0.581 1.4e-71
UNIPROTKB|H3BML6604 SLC6A2 "Transporter" [Homo sap 0.538 0.263 0.534 3.2e-68
UNIPROTKB|F1LNR9597 Slc6a2 "Transporter" [Rattus n 0.538 0.266 0.527 5.1e-68
UNIPROTKB|F1LQW0567 Slc6a2 "Transporter" [Rattus n 0.538 0.280 0.527 5.1e-68
UNIPROTKB|Q9DGN5635 SLC6A2 "Transporter" [Gallus g 0.542 0.251 0.531 6e-68
UNIPROTKB|B4DX48512 SLC6A2 "Transporter" [Homo sap 0.538 0.310 0.534 6.5e-68
UNIPROTKB|H3BRE9572 SLC6A2 "Transporter" [Homo sap 0.538 0.277 0.534 6.5e-68
MGI|MGI:1270850617 Slc6a2 "solute carrier family 0.538 0.257 0.534 8.2e-68
UNIPROTKB|Q01959620 SLC6A3 "Sodium-dependent dopam 0.532 0.253 0.535 8.2e-68
FB|FBgn0034136 DAT "Dopamine transporter" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 656 (236.0 bits), Expect = 8.2e-108, Sum P(3) = 8.2e-108
 Identities = 128/161 (79%), Positives = 140/161 (86%)

Query:    78 EDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPG 137
             +DA+LTS INS TSFIAGFVIFSVLGYMAH  GV I +VA EGPGLVF+VYPAAIATMP 
Sbjct:   343 KDALLTSFINSATSFIAGFVIFSVLGYMAHTLGVRIEDVATEGPGLVFVVYPAAIATMPA 402

Query:   138 SIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLAS 197
             S FW+LIFFMMLLTLGLDSSFGGSEAIITALSDEFP I  NRE+F+A LFSLYFVVGLAS
Sbjct:   403 STFWALIFFMMLLTLGLDSSFGGSEAIITALSDEFPKIKRNRELFVAGLFSLYFVVGLAS 462

Query:   198 CAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY 238
             C QGGFYFFHLLD+YAAGYSIL+AV FE+IA   +YG   +
Sbjct:   463 CTQGGFYFFHLLDRYAAGYSILVAVFFEAIAVSWIYGTNRF 503
GO:0005330 "dopamine:sodium symporter activity" evidence=ISS
GO:0005329 "dopamine transmembrane transporter activity" evidence=IDA;NAS
GO:0005887 "integral to plasma membrane" evidence=ISM
GO:0019811 "cocaine binding" evidence=NAS;IDA
GO:0015872 "dopamine transport" evidence=IDA
GO:0006836 "neurotransmitter transport" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0042745 "circadian sleep/wake cycle" evidence=IDA
GO:0030431 "sleep" evidence=IMP
WB|WBGene00000934 dat-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|H3BML6 SLC6A2 "Transporter" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1LNR9 Slc6a2 "Transporter" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQW0 Slc6a2 "Transporter" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9DGN5 SLC6A2 "Transporter" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|B4DX48 SLC6A2 "Transporter" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H3BRE9 SLC6A2 "Transporter" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1270850 Slc6a2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q01959 SLC6A3 "Sodium-dependent dopamine transporter" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
cd11556552 cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub 1e-107
cd11497539 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen 6e-92
pfam00209506 pfam00209, SNF, Sodium:neurotransmitter symporter 1e-72
cd11496543 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen 7e-72
cd11513537 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent 3e-64
cd11514555 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent 7e-60
cd11500544 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent 1e-59
cd10324417 cd10324, SLC6sbd, Solute carrier 6 family, neurotr 5e-59
cd11512560 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n 1e-58
cd11510542 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent 4e-52
cd11499606 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent 2e-51
cd11506598 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent 4e-49
cd11501601 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent 1e-48
cd11507544 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent 1e-46
cd11509592 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c 2e-45
cd11511541 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent 2e-44
cd11508542 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent 8e-44
cd11498585 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent 8e-39
cd10332565 cd10332, SLC6sbd-B0AT-like, System B(0) neutral am 1e-36
cd10334480 cd10334, SLC6sbd_u1, uncharacterized bacterial and 4e-33
cd11554406 cd11554, SLC6sbd_u2, uncharacterized eukaryotic so 7e-27
cd11515530 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot 7e-24
cd11497 539 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen 5e-22
cd11502543 cd11502, SLC6sbd_NTT5, Neurotransmitter transporte 5e-22
cd11517576 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3 2e-20
COG0733439 COG0733, COG0733, Na+-dependent transporters of th 2e-20
cd11556 552 cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub 3e-20
cd11518576 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent 6e-20
cd11522580 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch 7e-20
cd11521589 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm 5e-18
cd11513 537 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent 2e-15
cd11516581 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am 3e-15
pfam00209506 pfam00209, SNF, Sodium:neurotransmitter symporter 9e-14
cd11512 560 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n 3e-12
cd11510 542 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent 1e-11
cd11496 543 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen 2e-11
cd11514 555 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent 2e-11
cd11511 541 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent 1e-10
cd10336439 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa 3e-10
cd11500 544 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent 4e-10
cd11507 544 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent 4e-09
cd11508 542 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent 8e-09
cd11509 592 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c 2e-08
cd10333500 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and 1e-07
cd11501 601 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent 9e-07
cd11499 606 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent 2e-06
cd10332 565 cd10332, SLC6sbd-B0AT-like, System B(0) neutral am 2e-05
cd10324417 cd10324, SLC6sbd, Solute carrier 6 family, neurotr 6e-04
cd11506 598 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent 0.001
cd11522 580 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch 0.002
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain Back     alignment and domain information 
 Score =  320 bits (822), Expect = e-107
 Identities = 145/245 (59%), Positives = 176/245 (71%), Gaps = 39/245 (15%)

Query: 79  DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 138
           DA++TS IN  TSF++GFVIFSVLGYMA  SG PI +VA EGPGLVF+VYP A++TMPGS
Sbjct: 299 DALVTSSINCLTSFLSGFVIFSVLGYMACRSGKPIEDVATEGPGLVFVVYPEALSTMPGS 358

Query: 139 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 198
            FWSL+FF+ML+TLGLDSSFGGSEAIITALSDEFP+I  +RE+F+ CLF+ YFV+GLA C
Sbjct: 359 TFWSLLFFLMLMTLGLDSSFGGSEAIITALSDEFPIIKRHRELFVGCLFAFYFVIGLAMC 418

Query: 199 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 228
            QGG YFFHLLD+YAAGYSILIAVLFE++A                              
Sbjct: 419 TQGGIYFFHLLDRYAAGYSILIAVLFEAVAVSWIYGLDRFCQDIKEMLGFRPGIYWKICW 478

Query: 229 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVVIASSSVIMIPGMAVYQMIITP 279
                    F I YGL  Y+PL+Y+ Y YP WANVLG + A SS+ MIP +A+YQ++ TP
Sbjct: 479 KFIAPIFLLFNITYGLINYQPLTYDDYTYPTWANVLGWIFAGSSISMIPIVAIYQILNTP 538

Query: 280 GTFMQ 284
           GTF++
Sbjct: 539 GTFIE 543

SERT-like Na(+)- and Cl(-)-dependent monoamine transporters, transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: the norepinephrine transporter NET, the serotonin transporter SERT , and the dopamine transporter DAT1. These latter may play a role in diseases or disorders including depression, anxiety disorders, and attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. They belongs to the solute carrier 6 (SLC6) transporter family. Members of this subgroup are uncharacterized. Length = 552
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family Back     alignment and domain information
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain Back     alignment and domain information
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain Back     alignment and domain information
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain Back     alignment and domain information
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain Back     alignment and domain information
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain Back     alignment and domain information
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain Back     alignment and domain information
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain Back     alignment and domain information
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain Back     alignment and domain information
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain Back     alignment and domain information
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain Back     alignment and domain information
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain Back     alignment and domain information
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain Back     alignment and domain information
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain Back     alignment and domain information
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain Back     alignment and domain information
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain Back     alignment and domain information
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain Back     alignment and domain information
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family Back     alignment and domain information
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain Back     alignment and domain information
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain Back     alignment and domain information
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain Back     alignment and domain information
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain Back     alignment and domain information
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain Back     alignment and domain information
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain Back     alignment and domain information
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain Back     alignment and domain information
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain Back     alignment and domain information
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain Back     alignment and domain information
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 295
KOG3660|consensus629 100.0
KOG3659|consensus629 100.0
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 100.0
COG0733439 Na+-dependent transporters of the SNF family [Gene 99.97
PRK09928 679 choline transport protein BetT; Provisional 87.2
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 84.7
>KOG3660|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.7e-57  Score=449.27  Aligned_cols=277  Identities=45%  Similarity=0.839  Sum_probs=261.1

Q ss_pred             CCccCcHHhhhHHhhcccccCC--CCCCcccchHHHHHHHHHHHHHHHHHhhccccccceEEE-----------------
Q psy5257          15 PVFASAAGEYFSRYILEMQHST--GLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKVRK-----------------   75 (295)
Q Consensus        15 ~~~~s~~~eff~~~vL~~~~s~--~i~~~g~~~w~l~~~l~~~W~iv~~~i~kGi~~~gKv~y-----------------   75 (295)
                      .+..++.+++|.+..++.  ++  ++++.|.++|++++|++++|++||+|++||+|++||++|                 
T Consensus       183 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~w~L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRg  260 (629)
T KOG3660|consen  183 LNFNSPVAEFWENRVLSL--SDGSGIEDFGSINWPLALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRG  260 (629)
T ss_pred             hhhccchhhhhhhhhccc--ccccccccCCCCChHHHHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHH
Confidence            345678999999999998  66  499999999999999999999999999999999999999                 


Q ss_pred             ----e-----------------------------------------------------cCcceehhhhhhhhHhhhhHHH
Q psy5257          76 ----G-----------------------------------------------------NEDAILTSLINSCTSFIAGFVI   98 (295)
Q Consensus        76 ----G-----------------------------------------------------~~da~~v~~~n~~~Sllag~~v   98 (295)
                          |                                                     +||+.++++.|+.+|+++|+++
T Consensus       261 vTL~Ga~~Gi~~~l~~~~~kL~~~~vW~dA~~QiffSlsi~~G~li~laSynk~~nN~yrDa~lv~~~~~~tS~~~g~~i  340 (629)
T KOG3660|consen  261 VTLPGAGDGINFYLTPDWTKLLDPQVWGDAATQIFFSLSIGFGGLIALASYNKFNNNCYRDAILVVLLDTITSLLAGFAI  340 (629)
T ss_pred             ccCCCHHHHHHHHHhhhhHhhcChhhHHHHHHhHHHhHHHHHhhhheeeeeeccCCcceeeeeeeeecccHHHHHHHHHH
Confidence                1                                                     9999999999999999999999


Q ss_pred             HHHHHHHHHHhCC-CccccccCCCcEEEeehHHHHhcCCCchhHHHHHHHHHHHhhhccCCCCCcceehhhhhccCCCCC
Q psy5257          99 FSVLGYMAHISGV-PINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGN  177 (295)
Q Consensus        99 f~~lG~~a~~~~~-~~~~v~~~G~gL~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~i~~lE~ivt~l~D~f~~~~~  177 (295)
                      |+++||+|++.|+ +.++++++|+||+|++||+++++||.+++|+.+||+|++++|++|++.++|.+++++.|+||.+|.
T Consensus       341 FsilGfla~~~~v~~~~~v~~~g~~LaFi~YP~a~~~~p~~plWs~LfF~ml~~LG~~s~~~~ve~i~t~i~D~Fp~~~~  420 (629)
T KOG3660|consen  341 FSILGFLAHEQGVSDIAEVAKSGPGLAFIAYPEALAQMPLSPLWSGLFFFMLLLLGLDSQFAIVETIVTAIVDEFPRLRN  420 (629)
T ss_pred             HHHHHHHHHHhCCcchhhccCCCCchhhhhhHHHHHhCcccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccccc
Confidence            9999999999999 889999999999999999999999999999999999999999999999999999999999997788


Q ss_pred             chhhhhHHHHHHHHHhhcccccccccccccchhHHhhhhHHHHHHHHHHHhhhhhhc-----------------------
Q psy5257         178 NREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYG-----------------------  234 (295)
Q Consensus       178 ~R~~~~~~~~~~~fllgl~~~t~~G~y~~~l~D~~~~~~~l~~~~l~e~i~~~~i~~-----------------------  234 (295)
                      +|+..++.+|+++|++|++++|++|.|+++++|+|++++.+++++++|++.+.|+||                       
T Consensus       421 ~~~~~vl~vcv~~fllGl~~~t~~G~y~~~l~D~y~a~~~~~~~~~~e~~~i~wiYG~~~~~~di~~M~g~~~~~~~~~~  500 (629)
T KOG3660|consen  421 RRWIVVLFVCVVGFLLGLPLVTEGGIYWFQLFDYYAASWSLLFIAIFECFAIAWVYGADRFRDDIHEMIGCGRPSPYWKL  500 (629)
T ss_pred             cchhhhHHHHHHHHHcchheecCcchhHHHHHHHHhchHHHHHHHHHHHHHHhheecccchHhhHHHHhCCCCCCHHHHH
Confidence            899999999999999999999999999999999999999999999999955555554                       


Q ss_pred             -----------------ccccccCCCC-CcccCchhhhhhHHhhhhhhHHHHHHHHHHHHhCCCc-hHHhhhhhccCc
Q psy5257         235 -----------------LTTYEPLSYE-SYVYPQWANVLGVVIASSSVIMIPGMAVYQMIITPGT-FMQDQEKTSRSS  293 (295)
Q Consensus       235 -----------------~~~~~~~~y~-~~~yp~W~~~~gw~l~~~~~~~Ip~~~i~~~~~~~G~-~~~r~~~~~~p~  293 (295)
                                       ..+|+|.+|+ .|+||+|.+.+||+++++|+++||++++++++|.+|+ .+||+|+.++|+
T Consensus       501 ~W~f~tP~~~~~i~v~s~~~~~p~~y~~~~~yP~w~~~~Gw~~a~~~~~~iP~~ai~~~~~~~~~~~~~R~~~~~~p~  578 (629)
T KOG3660|consen  501 CWKFVTPILLLGILVFSLVKYYPLKYNKVYVYPPWGDIVGWLVALSPLLVIPLYAIIQILRAKGTKLKERIKFLLRPL  578 (629)
T ss_pred             HHHHhhhHHHHHHHHHHHHhccCccCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHhcCC
Confidence                             3445788899 8899999999999999999999999999999999997 999999999995

>KOG3659|consensus Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 3e-18
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Length = 519 Back     alignment and structure
 Score = 83.6 bits (207), Expect = 3e-18
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 9/157 (5%)

Query: 80  AILTSLINSCTSFIAGFVI--FSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPG 137
            +  + +N     I G  I   + + +    + V I +       L FI  PA  +   G
Sbjct: 279 GLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAG--AFNLGFITLPAIFSQTAG 336

Query: 138 SIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLAS 197
             F   ++F +L   GL SS    + +I  L DE      +R+  +    ++ F      
Sbjct: 337 GTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL---KLSRKHAVLWTAAIVFFSAHLV 393

Query: 198 CAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYG 234
                      +D +A    ++   L E I F  ++G
Sbjct: 394 M--FLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG 428

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 100.0
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
Probab=100.00  E-value=2.4e-45  Score=361.15  Aligned_cols=233  Identities=19%  Similarity=0.230  Sum_probs=207.9

Q ss_pred             CcHHhhhHHhhcccccCCCCCCcccchHHHHHHHHHHHHHHHHHhhccc-cccceEEE---------------------e
Q psy5257          19 SAAGEYFSRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGI-STSGKVRK---------------------G   76 (295)
Q Consensus        19 s~~~eff~~~vL~~~~s~~i~~~g~~~w~l~~~l~~~W~iv~~~i~kGi-~~~gKv~y---------------------G   76 (295)
                      +|++|||+ ++++.  ++++++.|+++|++++|++++|++++++++||| |.++|+.|                     |
T Consensus       142 ~~~~~~f~-~~l~~--~~~~~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpG  218 (519)
T 2a65_A          142 RPFKEFLY-SYIGV--PKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLET  218 (519)
T ss_dssp             HHHHHHHH-HHHTC--CSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CcHHHHHH-HHHCC--CCCcccccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            35557775 57888  889999999999999999999999999999999 66888766                     1


Q ss_pred             ---------------------------------------------------------cCcceehhhhhhhhHhhhhHHHH
Q psy5257          77 ---------------------------------------------------------NEDAILTSLINSCTSFIAGFVIF   99 (295)
Q Consensus        77 ---------------------------------------------------------~~da~~v~~~n~~~Sllag~~vf   99 (295)
                                                                               .||+.++++.|+++|++||++||
T Consensus       219 p~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF  298 (519)
T 2a65_A          219 PNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSIS  298 (519)
T ss_dssp             TTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             CchhHHHHHHHHhcCCHHHhCCHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHH
Confidence                                                                     88999999999999999999999


Q ss_pred             HHHHHHHHHhCCC-ccccccCC-CcEEEeehHHHHhcCCCchhHHHHHHHHHHHhhhccCCCCCcceehhhhhccCCCCC
Q psy5257         100 SVLGYMAHISGVP-INEVAVEG-PGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGN  177 (295)
Q Consensus       100 ~~lG~~a~~~~~~-~~~v~~~G-~gL~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~i~~lE~ivt~l~D~f~~~~~  177 (295)
                      +.+||++  .|.+ ++|++++| |||+|++||+++++||++++|+++||+|++++|+||+++++|++++.++|+++   .
T Consensus       299 ~~lgf~a--~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~~---~  373 (519)
T 2a65_A          299 IPAAVAF--FGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELK---L  373 (519)
T ss_dssp             HHHHHHH--HCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---C
T ss_pred             HHHHHHh--cCCcchHHHhcCCCCceeHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhC---C
Confidence            9999987  5777 77777889 99999999999999999999999999999999999999999999999999986   5


Q ss_pred             chhhhhHHHHHHHHHhhccccccc-ccccccchhHHhhhhHHHHHHHHHHHhhhhhhccccc------------------
Q psy5257         178 NREIFIACLFSLYFVVGLASCAQG-GFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY------------------  238 (295)
Q Consensus       178 ~R~~~~~~~~~~~fllgl~~~t~~-G~y~~~l~D~~~~~~~l~~~~l~e~i~~~~i~~~~~~------------------  238 (295)
                      +|++++..+|+++|++|+|++|++ |   +|++|++++++.+++++++|++.+.|+|+..+.                  
T Consensus       374 ~R~~~~~~v~~~~fllgl~~~~~~~g---~~~~D~~~~~~~l~~~~l~~~i~v~wv~g~~~~~~~i~~~~~~~~~~~w~~  450 (519)
T 2a65_A          374 SRKHAVLWTAAIVFFSAHLVMFLNKS---LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYY  450 (519)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHBTTH---HHHHHHHTTTHHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCC---cchHHHHHhHHHHHHHHHHHHHhhheeeehhHHHHHHHcccCCchHHHHHH
Confidence            799999999999999999999998 7   999999999999999999999888888876542                  


Q ss_pred             ---------------------ccCCCCCcccCchhhhhhHHhhhhhhH
Q psy5257         239 ---------------------EPLSYESYVYPQWANVLGVVIASSSVI  265 (295)
Q Consensus       239 ---------------------~~~~y~~~~yp~W~~~~gw~l~~~~~~  265 (295)
                                           ++.+|++|+||.|.   ||.+++++++
T Consensus       451 ~~~~v~P~~l~~i~~~~~~~~~~~~y~~y~~~~~~---Gw~~~~~~~i  495 (519)
T 2a65_A          451 VMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWI---TRFYIIGLFL  495 (519)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHTHHHHHHSSCTTHHH---HHHHHHHHHH
T ss_pred             eEEehHHHHHHHHHHHHHHhCcCCCCCCccCccHH---HHHHHHHHHH
Confidence                                 23445567788884   9999987554

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 295
d2a65a1509 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte 2e-15
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

 Score = 74.1 bits (181), Expect = 2e-15
 Identities = 37/267 (13%), Positives = 73/267 (27%), Gaps = 47/267 (17%)

Query: 43  YIKWDMALCLLAVYLICYFSMWKGISTSGKVRKGNEDAILTSLINSCTSFIAGFVIFSVL 102
            +       +     + + ++    S   K +      +  + +N     I G  I    
Sbjct: 238 GVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPA 297

Query: 103 GYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSE 162
                     +         L FI  PA  +   G  F   ++F +L   GL SS    +
Sbjct: 298 AVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQ 357

Query: 163 AIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAV 222
            +I  L DE  L   +  ++ A +                      +D +A    ++   
Sbjct: 358 PMIAFLEDELKLSRKHAVLWTAAIVFFSA-----HLVMFLNKSLDEMDFWAGTIGVVFFG 412

Query: 223 LFESIAF---------------------------------------IIVYGLTTYEPLSY 243
           L E I F                                       ++V     Y P   
Sbjct: 413 LTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIM 472

Query: 244 ESYVYPQWAN---VLGVVIASSSVIMI 267
           E   +  W     ++G+ +  + ++ +
Sbjct: 473 EETHWTVWITRFYIIGLFLFLTFLVFL 499

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 100.0
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=4.6e-35  Score=286.11  Aligned_cols=217  Identities=18%  Similarity=0.216  Sum_probs=181.2

Q ss_pred             ccCcHHhhhHHhhcccccCCCCCCcccc-hHHHHHHHHHHHHHHHHHhhccccccceEEE--------------------
Q psy5257          17 FASAAGEYFSRYILEMQHSTGLHDLGYI-KWDMALCLLAVYLICYFSMWKGISTSGKVRK--------------------   75 (295)
Q Consensus        17 ~~s~~~eff~~~vL~~~~s~~i~~~g~~-~w~l~~~l~~~W~iv~~~i~kGi~~~gKv~y--------------------   75 (295)
                      ..+|.+||+++++...+.++++.+.... ...++++++++|.++++++.||+|+.||++|                    
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~gi~kGi~~~~kv~~~~l~~~~~~l~i~~~~l~~~  215 (509)
T d2a65a1         136 ILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETP  215 (509)
T ss_dssp             HHHHHHHHHHHHHTCCSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEET
T ss_pred             cccchHHHHHhhhccccCCCccccchHHHHHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHhhhcccC
Confidence            3567899999887665333333333322 2335678899999999999999999999987                    


Q ss_pred             --e-----------------------------------------------------cCcceehhhhhhhhHhhhhHHHHH
Q psy5257          76 --G-----------------------------------------------------NEDAILTSLINSCTSFIAGFVIFS  100 (295)
Q Consensus        76 --G-----------------------------------------------------~~da~~v~~~n~~~Sllag~~vf~  100 (295)
                        |                                                     .||+++++..|+.+|+++|.+++.
T Consensus       216 ~gga~~gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~~~n~~rda~~v~~~~~~~si~~~~~~~~  295 (509)
T d2a65a1         216 NGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISI  295 (509)
T ss_dssp             TEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCcHHHHhhhccCCCHHHhcChHHHHHHHHHHhhhhcccCCceeeehhhccchhhhcccceEEEecccceeeccccchhh
Confidence              1                                                     889999999999999999998888


Q ss_pred             HHHHHHHHhCCCccccccCCCcEEEeehHHHHhcCCCchhHHHHHHHHHHHhhhccCCCCCcceehhhhhccCCCCCchh
Q psy5257         101 VLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNRE  180 (295)
Q Consensus       101 ~lG~~a~~~~~~~~~v~~~G~gL~Fi~~P~a~~~mp~~~~ws~lFF~~l~~~gl~S~i~~lE~ivt~l~D~f~~~~~~R~  180 (295)
                      ..|+++.....+.+....+||||+|+++|+++++||++++|+++||+|++++|++|+++++|++++.++|+++.  .||+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~g~~L~Fv~~P~~fs~~~~~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l~d~~~~--~r~~  373 (509)
T d2a65a1         296 PAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKL--SRKH  373 (509)
T ss_dssp             HHHHHHHCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHH
T ss_pred             hhheeeeccccccccccccCCCchhhhhHHHhhcCCcchhHHHHHHHHHHHHHHHHHhccccchhHHHHHhcCC--chhh
Confidence            88777664443344456789999999999999999999999999999999999999999999999999999873  4566


Q ss_pred             hhhHHHHHHHHHhhcccccccccccccchhHHhhhhHHHHHHHHHHHhhhhhhccccc
Q psy5257         181 IFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY  238 (295)
Q Consensus       181 ~~~~~~~~~~fllgl~~~t~~G~y~~~l~D~~~~~~~l~~~~l~e~i~~~~i~~~~~~  238 (295)
                      ..++.+|+++++.++++.+++|   ++++|++++++.+++++++|++.+.|+||.+++
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~---~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~r~  428 (509)
T d2a65a1         374 AVLWTAAIVFFSAHLVMFLNKS---LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKA  428 (509)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTH---HHHHHHHTTTHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hhhheeEEEEhhhhHHHHhcch---HHHHHHHHHHHHHHHHHHHHHheeeeEecHHHH
Confidence            6677788899999999999877   578999999999999999999999999987654