Psyllid ID: psy5317

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MNSTSYTLLPKYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRGKTSRPHVLTTGIAAAFILMSAAKLTKPSF
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mnstsytllpkygLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHlskdglypyigwfgrgktsrphvlTTGIAAAFILMSAakltkpsf
Flexible Loop (DISEMBL)
mnstsytllpkYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRGKTSRPHVLTTGIAAAFILMSAakltkpsf
Low Complexity Region (SEG)
MNSTSYTLLPKYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRGKTSRPHVLTTGIAAAFILMSAAKLTKPSF
Disordered region (IsUnstruct)
*****YTLLPKYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRGKTSRPHVLTTGIAAAFILMSA********
Disordered Region (DISOPRED)
********LPKYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRGKTSRPHVLTTGIAAAFILMSAAKLTKPSF
Disordered Region (DISEMBL)
MNSTSYTLLPKYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRGKTSRPHVLTTGIAAAFILMSAAKLTKPSF
Disordered Region (DISPRO)
****SYTLLPKYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRGKTSRPHVLTTGIAAAFILMSAAKLTKPSF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNSTSYTLLPKYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRGKTSRPHVLTTGIAAAFILMSAAKLTKPSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
P55019	1023	Solute carrier family 12	N/A	N/A	0.881	0.086	0.393	3e-13
Q13621	1099	Solute carrier family 12	yes	N/A	0.881	0.080	0.361	1e-10
P55011	1212	Solute carrier family 12	no	N/A	0.871	0.072	0.354	7e-10
P55016	1095	Solute carrier family 12	no	N/A	0.881	0.081	0.351	7e-10
P55012	1205	Solute carrier family 12	yes	N/A	0.871	0.073	0.354	8e-10
P55014	1095	Solute carrier family 12	no	N/A	0.881	0.081	0.351	9e-10
P55013	1191	Solute carrier family 12	N/A	N/A	0.871	0.073	0.365	1e-09
P55015	1099	Solute carrier family 12	no	N/A	0.881	0.080	0.351	1e-09
P55018	1002	Solute carrier family 12	no	N/A	0.663	0.066	0.391	4e-09
P59158	1002	Solute carrier family 12	no	N/A	0.613	0.061	0.403	5e-09

>sp|P55019|S12A3_PSEAM Solute carrier family 12 member 3 OS=Pseudopleuronectes americanus GN=slc12a3 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 59/94 (62%), Gaps = 5/94 (5%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFG 70
           K+G+  Y++S+ L+SAF+PL  + +  + L+ A + L  AP+VF+ L KD LYP IG+FG
Sbjct: 436 KHGIMNYYQSMSLVSAFAPLISAGIFGATLSSALACLVSAPKVFQCLCKDQLYPLIGFFG 495

Query: 71  R--GKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
           +  GK + P   ++LT  IA  F+L++      P
Sbjct: 496 KGYGKNAEPLRAYLLTYVIAVCFVLIAELNTIAP 529

Electrically silent transporter system. Mediates sodium and chloride reabsorption.
Pseudopleuronectes americanus (taxid: 8265)

>sp|Q13621|S12A1_HUMAN Solute carrier family 12 member 1 OS=Homo sapiens GN=SLC12A1 PE=1 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 5/94 (5%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWF- 69
           +YGL   F+ + ++S F PL  + + ++ L+ A +SL  AP+VF+ L KD +Y  + +F 
Sbjct: 476 QYGLMNNFQVMSMVSGFGPLITAGIFSATLSSALASLVSAPKVFQALCKDNIYKALQFFA 535

Query: 70  -GRGKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
            G GK + P   ++LT  IA AFIL++      P
Sbjct: 536 KGYGKNNEPLRGYILTFLIAMAFILIAELNTIAP 569

Electrically silent transporter system. Mediates sodium and chloride reabsorption. Plays a vital role in the regulation of ionic balance and cell volume.

Homo sapiens (taxid: 9606)

>sp|P55011|S12A2_HUMAN Solute carrier family 12 member 2 OS=Homo sapiens GN=SLC12A2 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 5/93 (5%)

Query: 12  YGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWF-- 69
           YGL   F+ + ++S F+PL  + + ++ L+ A +SL  AP++F+ L KD +YP    F  
Sbjct: 584 YGLMNNFQVMSMVSGFTPLISAGIFSATLSSALASLVSAPKIFQALCKDNIYPAFQMFAK 643

Query: 70  GRGKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
           G GK + P   ++LT  IA  FIL++   +  P
Sbjct: 644 GYGKNNEPLRGYILTFLIALGFILIAELNVIAP 676

Electrically silent transporter system. Mediates sodium and chloride reabsorption. Plays a vital role in the regulation of ionic balance and cell volume.

Homo sapiens (taxid: 9606)

>sp|P55016|S12A1_RAT Solute carrier family 12 member 1 OS=Rattus norvegicus GN=Slc12a1 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 5/94 (5%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWF- 69
           +YGL   F+ + ++S F PL  + + ++ L+ A +SL  AP+VF+ L KD ++  + +F 
Sbjct: 472 QYGLMNNFQVMSMVSGFGPLITAGIFSATLSSALASLVSAPKVFQALCKDNIFKGLQFFA 531

Query: 70  -GRGKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
            G GK + P   + LT  IA AFIL++   +  P
Sbjct: 532 KGYGKNNEPLRGYFLTFVIAMAFILIAELNVIAP 565

Electrically silent transporter system. Mediates sodium and chloride reabsorption. Plays a vital role in the regulation of ionic balance and cell volume.

Rattus norvegicus (taxid: 10116)

>sp|P55012|S12A2_MOUSE Solute carrier family 12 member 2 OS=Mus musculus GN=Slc12a2 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 5/93 (5%)

Query: 12  YGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWF-- 69
           YGL   F+ + ++S F+PL  + + ++ L+ A +SL  AP++F+ L KD +YP    F  
Sbjct: 577 YGLMNNFQVMSMVSGFAPLISAGIFSATLSSALASLVSAPKIFQALCKDNIYPAFQMFAK 636

Query: 70  GRGKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
           G GK + P   ++LT  IA  FIL++   +  P
Sbjct: 637 GYGKNNEPLRGYILTFLIALGFILIAELNVIAP 669

Electrically silent transporter system. Mediates sodium and chloride reabsorption. Plays a vital role in the regulation of ionic balance and cell volume.

Mus musculus (taxid: 10090)

>sp|P55014|S12A1_MOUSE Solute carrier family 12 member 1 OS=Mus musculus GN=Slc12a1 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 5/94 (5%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWF- 69
           +YGL   F+ + ++S F PL  + + ++ L+ A +SL  AP+VF+ L KD ++  + +F 
Sbjct: 472 QYGLMNNFQVMSMVSGFGPLITAGIFSATLSSALASLVSAPKVFQALCKDNIFKGLQFFA 531

Query: 70  -GRGKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
            G GK + P   + LT  IA AFIL++   +  P
Sbjct: 532 KGYGKNNEPLRGYFLTFVIAMAFILIAELNVIAP 565

Electrically silent transporter system. Mediates sodium and chloride reabsorption. Plays a vital role in the regulation of ionic balance and cell volume.

Mus musculus (taxid: 10090)

>sp|P55013|S12A2_SQUAC Solute carrier family 12 member 2 OS=Squalus acanthias GN=SLC12A2 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 5/93 (5%)

Query: 12  YGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWF-- 69
           YGL   F+ + L+S F PL  + + ++ L+ A +SL  AP++F+ L KD +YP +  F  
Sbjct: 557 YGLMNDFQVMSLVSGFGPLITAGIFSATLSSALASLVSAPKIFQALCKDNIYPGLHVFSV 616

Query: 70  GRGKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
           G GK + P   +VLT  I   FIL++   +  P
Sbjct: 617 GYGKNNEPLRGYVLTFFIGLGFILIAELNVIAP 649

Electrically silent transporter system. Mediates sodium and chloride reabsorption. Plays a vital role in the regulation of ionic balance and cell volume.

Squalus acanthias (taxid: 7797)

>sp|P55015|S12A1_RABIT Solute carrier family 12 member 1 OS=Oryctolagus cuniculus GN=SLC12A1 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 5/94 (5%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWF- 69
           +YGL   F+ + ++S F PL  + + ++ L+ A +SL  A +VF+ L KD +Y  + +F 
Sbjct: 476 QYGLMNNFQVMSMVSGFGPLITAGIFSATLSSALASLVSAAKVFQALCKDNIYKALQFFA 535

Query: 70  -GRGKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
            G GK + P   ++LT  IA AFIL++      P
Sbjct: 536 KGYGKNNEPLRGYILTFVIAMAFILIAELNTIAP 569

Electrically silent transporter system. Mediates sodium and chloride reabsorption. Plays a vital role in the regulation of ionic balance and cell volume.

Oryctolagus cuniculus (taxid: 9986)

>sp|P55018|S12A3_RAT Solute carrier family 12 member 3 OS=Rattus norvegicus GN=Slc12a3 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 2/69 (2%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFG 70
           +YGL  Y++++ ++SAF+PL  + +  + L+ A + L  A +VF+ L +D LYP IG+FG
Sbjct: 435 RYGLINYYQTMSMVSAFAPLITAGIFGATLSSALACLVSAAKVFQCLCEDQLYPLIGFFG 494

Query: 71  R--GKTSRP 77
           +  GK   P
Sbjct: 495 KGYGKNKEP 503

Electrically silent transporter system. Mediates sodium and chloride reabsorption.

Rattus norvegicus (taxid: 10116)

>sp|P59158|S12A3_MOUSE Solute carrier family 12 member 3 OS=Mus musculus GN=Slc12a3 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 43/62 (69%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFG 70
           +YGL  Y++++ ++SAF+PL  + +  + L+ A + L  A +VF+ L +D LYP IG+FG
Sbjct: 435 RYGLINYYQTMSMVSAFAPLITAGIFGATLSSALACLVSAAKVFQCLCEDQLYPLIGFFG 494

Query: 71  RG 72
           +G
Sbjct: 495 KG 496

Electrically silent transporter system. Mediates sodium and chloride reabsorption.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
195327109	1171	GM24663 [Drosophila sechellia] gi|194119	0.881	0.076	0.478	6e-14
195440758	1189	GK12754 [Drosophila willistoni] gi|19416	0.881	0.074	0.468	9e-14
195589804	1167	GD12726 [Drosophila simulans] gi|1941966	0.881	0.076	0.468	2e-13
21358517	1171	sodium chloride cotransporter 69, isofor	0.881	0.076	0.468	2e-13
242016302	1067	sodium-potassium-chloride cotransporter,	0.881	0.083	0.436	2e-13
442631930	1191	sodium chloride cotransporter 69, isofor	0.881	0.074	0.468	2e-13
442631934	1207	sodium chloride cotransporter 69, isofor	0.881	0.073	0.468	2e-13
170071595	799	bumetanide-sensitive Na-K-Cl cotransport	0.881	0.111	0.436	2e-13
195160607	942	GL24962 [Drosophila persimilis] gi|19411	0.881	0.094	0.446	3e-13
198464853	1187	GA18131 [Drosophila pseudoobscura pseudo	0.881	0.074	0.446	4e-13

>gi|195327109|ref|XP_002030264.1| GM24663 [Drosophila sechellia] gi|194119207|gb|EDW41250.1| GM24663 [Drosophila sechellia]

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 5/94 (5%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWF- 69
           KYGL+  F+ +EL+SAF PL Y+    + L+ A +SL  AP+VF+ L KD LYP I WF 
Sbjct: 506 KYGLQNSFQVIELVSAFGPLIYAGCYAATLSSALASLVSAPKVFQALCKDELYPKIVWFA 565

Query: 70  -GRGKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
            G GK + P   +VLT  IA AFIL+    L  P
Sbjct: 566 KGYGKNNEPVRGYVLTFVIACAFILIGELNLIAP 599

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195440758|ref|XP_002068207.1| GK12754 [Drosophila willistoni] gi|194164292|gb|EDW79193.1| GK12754 [Drosophila willistoni]

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 5/94 (5%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWF- 69
           KYGL+  F+ +EL+S F PL Y+    + L+ A +SL  AP+VF+ L KD LYP I WF 
Sbjct: 498 KYGLQHSFQVIELVSGFGPLIYAGCFAATLSSALASLVSAPKVFQALCKDELYPKIVWFA 557

Query: 70  -GRGKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
            G GK + P   +VLT  IA AFIL+    L  P
Sbjct: 558 KGFGKNNEPVRGYVLTFIIATAFILIGELNLIAP 591

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195589804|ref|XP_002084639.1| GD12726 [Drosophila simulans] gi|194196648|gb|EDX10224.1| GD12726 [Drosophila simulans]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 5/94 (5%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWF- 69
            YGL+  F+ +EL+SAF PL Y+    + L+ A +SL  AP+VF+ L KD LYP I WF 
Sbjct: 502 NYGLQNSFQVIELVSAFGPLIYAGCYAATLSSALASLVSAPKVFQALCKDELYPKIVWFA 561

Query: 70  -GRGKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
            G GK + P   +VLT  IA AFIL+    L  P
Sbjct: 562 KGYGKNNEPVRGYVLTFIIACAFILIGELNLIAP 595

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21358517|ref|NP_648572.1| sodium chloride cotransporter 69, isoform A [Drosophila melanogaster] gi|45553077|ref|NP_996066.1| sodium chloride cotransporter 69, isoform G [Drosophila melanogaster] gi|7294587|gb|AAF49927.1| sodium chloride cotransporter 69, isoform A [Drosophila melanogaster] gi|20151457|gb|AAM11088.1| GH27027p [Drosophila melanogaster] gi|45445912|gb|AAS65014.1| sodium chloride cotransporter 69, isoform G [Drosophila melanogaster] gi|220956690|gb|ACL90888.1| Ncc69-PA [synthetic construct]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 5/94 (5%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWF- 69
            YGL+  F+ +EL+SAF PL Y+    + L+ A +SL  AP+VF+ L KD LYP I WF 
Sbjct: 506 NYGLQNSFQVIELVSAFGPLIYAGCYAATLSSALASLVSAPKVFQALCKDELYPKIVWFA 565

Query: 70  -GRGKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
            G GK + P   +VLT  IA AFIL+    L  P
Sbjct: 566 KGYGKNNEPVRGYVLTFIIACAFILIGELNLIAP 599

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016302|ref|XP_002428768.1| sodium-potassium-chloride cotransporter, putative [Pediculus humanus corporis] gi|212513453|gb|EEB16030.1| sodium-potassium-chloride cotransporter, putative [Pediculus humanus corporis]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 56/94 (59%), Gaps = 5/94 (5%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFG 70
           KYGL    + +E++SAF P  Y+    + L+ A +SL  AP+VF+ L KD LYPYI WFG
Sbjct: 410 KYGLHNTIQVMEIVSAFGPFIYAGCFAATLSSALASLVSAPKVFQALCKDSLYPYISWFG 469

Query: 71  R--GKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
           +  GK + P   ++LT  IA AFIL+       P
Sbjct: 470 KGYGKNNEPVRGYILTFFIAIAFILIGNLNSIAP 503

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442631930|ref|NP_001261756.1| sodium chloride cotransporter 69, isoform C [Drosophila melanogaster] gi|442631932|ref|NP_001261757.1| sodium chloride cotransporter 69, isoform D [Drosophila melanogaster] gi|442631936|ref|NP_001261759.1| sodium chloride cotransporter 69, isoform F [Drosophila melanogaster] gi|440215687|gb|AGB94449.1| sodium chloride cotransporter 69, isoform C [Drosophila melanogaster] gi|440215688|gb|AGB94450.1| sodium chloride cotransporter 69, isoform D [Drosophila melanogaster] gi|440215690|gb|AGB94452.1| sodium chloride cotransporter 69, isoform F [Drosophila melanogaster]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 5/94 (5%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWF- 69
            YGL+  F+ +EL+SAF PL Y+    + L+ A +SL  AP+VF+ L KD LYP I WF 
Sbjct: 506 NYGLQNSFQVIELVSAFGPLIYAGCYAATLSSALASLVSAPKVFQALCKDELYPKIVWFA 565

Query: 70  -GRGKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
            G GK + P   +VLT  IA AFIL+    L  P
Sbjct: 566 KGYGKNNEPVRGYVLTFIIACAFILIGELNLIAP 599

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442631934|ref|NP_001261758.1| sodium chloride cotransporter 69, isoform E [Drosophila melanogaster] gi|440215689|gb|AGB94451.1| sodium chloride cotransporter 69, isoform E [Drosophila melanogaster]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 5/94 (5%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWF- 69
            YGL+  F+ +EL+SAF PL Y+    + L+ A +SL  AP+VF+ L KD LYP I WF 
Sbjct: 506 NYGLQNSFQVIELVSAFGPLIYAGCYAATLSSALASLVSAPKVFQALCKDELYPKIVWFA 565

Query: 70  -GRGKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
            G GK + P   +VLT  IA AFIL+    L  P
Sbjct: 566 KGYGKNNEPVRGYVLTFIIACAFILIGELNLIAP 599

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170071595|ref|XP_001869952.1| bumetanide-sensitive Na-K-Cl cotransport protein [Culex quinquefasciatus] gi|167867542|gb|EDS30925.1| bumetanide-sensitive Na-K-Cl cotransport protein [Culex quinquefasciatus]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 5/94 (5%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFG 70
           +YGL   F+ +EL+SAF P+ Y+    + L+ A +SL  AP+VF+ L KD LYP IGWFG
Sbjct: 464 EYGLHNSFQVMELVSAFGPIIYAGCFAATLSSALASLVSAPKVFQALCKDKLYPKIGWFG 523

Query: 71  R--GKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
           +  GK + P   ++LT  IA A IL+       P
Sbjct: 524 KGFGKNNEPVRGYILTFIIAVAVILIGELNAIAP 557

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195160607|ref|XP_002021166.1| GL24962 [Drosophila persimilis] gi|194118279|gb|EDW40322.1| GL24962 [Drosophila persimilis]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 5/94 (5%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFG 70
           K+GL+  F+ +EL+S F PL Y+    + L+ A +SL  AP+VF+ L KD LYP I WF 
Sbjct: 499 KFGLQNSFQVIELVSGFGPLIYAGCFAATLSSALASLVSAPKVFQALCKDELYPKIVWFA 558

Query: 71  R--GKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
           +  GK + P   +VLT  IA+AFIL+    L  P
Sbjct: 559 KGFGKNNEPVRGYVLTFIIASAFILIGELNLIAP 592

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198464853|ref|XP_001353388.2| GA18131 [Drosophila pseudoobscura pseudoobscura] gi|198149909|gb|EAL30895.2| GA18131 [Drosophila pseudoobscura pseudoobscura]

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 5/94 (5%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFG 70
           K+GL+  F+ +EL+S F PL Y+    + L+ A +SL  AP+VF+ L KD LYP I WF 
Sbjct: 501 KFGLQNSFQVIELVSGFGPLIYAGCFAATLSSALASLVSAPKVFQALCKDELYPKIVWFA 560

Query: 71  R--GKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
           +  GK + P   +VLT  IA+AFIL+    L  P
Sbjct: 561 KGFGKNNEPVRGYVLTFIIASAFILIGELNLIAP 594

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
FB|FBgn0036279	1171	Ncc69 "sodium chloride cotrans	0.871	0.075	0.473	1.2e-13
UNIPROTKB|F1N9F6	976	SLC12A3 "Uncharacterized prote	0.881	0.091	0.404	1.7e-12
ZFIN|ZDB-GENE-040625-53	1136	slc12a2 "solute carrier family	0.881	0.078	0.404	9.3e-12
ZFIN|ZDB-GENE-060503-330	1020	slc12a10.1 "solute carrier fam	0.871	0.086	0.387	5.8e-11
RGD|3686	1002	Slc12a3 "solute carrier family	0.881	0.088	0.361	1.5e-10
ZFIN|ZDB-GENE-030131-9505	1012	slc12a3 "solute carrier family	0.871	0.086	0.387	1.5e-10
MGI|MGI:108114	1002	Slc12a3 "solute carrier family	0.881	0.088	0.361	1.9e-10
UNIPROTKB|J9PA00	408	SLC12A1 "Uncharacterized prote	0.881	0.218	0.361	3.5e-10
UNIPROTKB|F6UKR7	1028	SLC12A3 "Uncharacterized prote	0.881	0.086	0.351	4.2e-10
UNIPROTKB|E2QRQ5	1029	SLC12A3 "Uncharacterized prote	0.881	0.086	0.351	4.2e-10

FB|FBgn0036279 Ncc69 "sodium chloride cotransporter 69" [Drosophila melanogaster (taxid:7227)]

 Score = 191 (72.3 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 44/93 (47%), Positives = 57/93 (61%)

Query:    12 YGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWF-- 69
             YGL+  F+ +EL+SAF PL Y+    + L+ A +SL  AP+VF+ L KD LYP I WF  
Sbjct:   507 YGLQNSFQVIELVSAFGPLIYAGCYAATLSSALASLVSAPKVFQALCKDELYPKIVWFAK 566

Query:    70 GRGKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
             G GK + P   +VLT  IA AFIL+    L  P
Sbjct:   567 GYGKNNEPVRGYVLTFIIACAFILIGELNLIAP 599

GO:0015378 "sodium:chloride symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0008511 "sodium:potassium:chloride symporter activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006813 "potassium ion transport" evidence=IDA

GO:0035826 "rubidium ion transport" evidence=IDA

GO:0006821 "chloride transport" evidence=IDA

UNIPROTKB|F1N9F6 SLC12A3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 38/94 (40%), Positives = 57/94 (60%)

Query:    11 KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFG 70
             +YGL  Y++S+ ++S F PL  + +  + L+ A + L  AP+VF+ L KD LYP IG+FG
Sbjct:   388 RYGLSNYYQSMSMVSGFGPLITAGIFGATLSSALACLVSAPKVFQCLCKDQLYPLIGFFG 447

Query:    71 RG--KTSRP---HVLTTGIAAAFILMSAAKLTKP 99
             +G  K S P   ++LT  IA  FIL++      P
Sbjct:   448 KGYGKNSEPIRGYMLTYAIAIGFILIAELNAIAP 481

GO:0015377 "cation:chloride symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

ZFIN|ZDB-GENE-040625-53 slc12a2 "solute carrier family 12 (potassium/chloride transporters), member 2" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 9.3e-12, P = 9.3e-12
 Identities = 38/94 (40%), Positives = 58/94 (61%)

Query:    11 KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFG 70
             K+GL   F+ + ++S FSPL  + + ++ L+ A +SL  AP+VF+ L KD +YP I  FG
Sbjct:   508 KFGLHNDFQVMSVVSGFSPLISAGIFSATLSSALASLVSAPKVFQALCKDNIYPGIAIFG 567

Query:    71 RG--KTSRP---HVLTTGIAAAFILMSAAKLTKP 99
             +G  K + P   + LT GIA AFIL++   +  P
Sbjct:   568 KGYGKNNEPLRGYFLTFGIALAFILIAELNVIAP 601

GO:0005215 "transporter activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015377 "cation:chloride symporter activity" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IMP

GO:0048798 "swim bladder inflation" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0043583 "ear development" evidence=IMP

ZFIN|ZDB-GENE-060503-330 slc12a10.1 "solute carrier family 12 (sodium/potassium/chloride transporters), member 10.1" [Danio rerio (taxid:7955)]

 Score = 165 (63.1 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 36/93 (38%), Positives = 54/93 (58%)

Query:    12 YGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGR 71
             YGL   F+ L  +S F PL Y+ +  + L+ A + L  AP++F+ L +D +YPYIG+FG+
Sbjct:   446 YGLSNSFQVLVQVSGFGPLIYAGIFAATLSSALAFLVSAPKIFQCLCRDNIYPYIGFFGK 505

Query:    72 G--KTSRP---HVLTTGIAAAFILMSAAKLTKP 99
             G  K S P   ++L   IA  FIL++      P
Sbjct:   506 GYGKNSEPLRAYLLCYIIAMCFILIAELNTIAP 538

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015377 "cation:chloride symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|3686 Slc12a3 "solute carrier family 12 (sodium/chloride transporters), member 3" [Rattus norvegicus (taxid:10116)]

 Score = 161 (61.7 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 34/94 (36%), Positives = 57/94 (60%)

Query:    11 KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFG 70
             +YGL  Y++++ ++SAF+PL  + +  + L+ A + L  A +VF+ L +D LYP IG+FG
Sbjct:   435 RYGLINYYQTMSMVSAFAPLITAGIFGATLSSALACLVSAAKVFQCLCEDQLYPLIGFFG 494

Query:    71 RG--KTSRP---HVLTTGIAAAFILMSAAKLTKP 99
             +G  K   P   ++L   IA AFI+++      P
Sbjct:   495 KGYGKNKEPVRGYLLAYAIAVAFIIIAELNTIAP 528

GO:0005215 "transporter activity" evidence=ISO;ISS

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006810 "transport" evidence=ISO

GO:0006814 "sodium ion transport" evidence=IEA;ISO;ISS;IMP;IDA

GO:0006821 "chloride transport" evidence=IMP

GO:0015081 "sodium ion transmembrane transporter activity" evidence=IDA

GO:0015377 "cation:chloride symporter activity" evidence=IEA

GO:0015378 "sodium:chloride symporter activity" evidence=IMP;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA;ISO;ISS;IDA

GO:0031982 "vesicle" evidence=IDA

GO:0035725 "sodium ion transmembrane transport" evidence=IDA

GO:0070294 "renal sodium ion absorption" evidence=IC

ZFIN|ZDB-GENE-030131-9505 slc12a3 "solute carrier family 12 (sodium/chloride transporters), member 3" [Danio rerio (taxid:7955)]

 Score = 161 (61.7 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 36/93 (38%), Positives = 56/93 (60%)

Query:    12 YGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGR 71
             YGL  Y++S+ ++SA +PL  + +  + L+ A + L  AP+VF+ L KD LYP IG+FG+
Sbjct:   420 YGLSNYYQSMSMVSAVAPLITAGIFGATLSSALACLVSAPKVFQCLCKDKLYPGIGFFGK 479

Query:    72 G--KTSRP---HVLTTGIAAAFILMSAAKLTKP 99
             G  K + P   ++L   IA  FIL++      P
Sbjct:   480 GYGKNNEPLRSYLLAYIIAICFILIAELNTIAP 512

GO:0005215 "transporter activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015377 "cation:chloride symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

MGI|MGI:108114 Slc12a3 "solute carrier family 12, member 3" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 34/94 (36%), Positives = 57/94 (60%)

Query:    11 KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFG 70
             +YGL  Y++++ ++SAF+PL  + +  + L+ A + L  A +VF+ L +D LYP IG+FG
Sbjct:   435 RYGLINYYQTMSMVSAFAPLITAGIFGATLSSALACLVSAAKVFQCLCEDQLYPLIGFFG 494

Query:    71 RG--KTSRP---HVLTTGIAAAFILMSAAKLTKP 99
             +G  K   P   ++L   IA AFI+++      P
Sbjct:   495 KGYGKNREPVRGYLLAYAIAVAFIIIAELNTIAP 528

GO:0005215 "transporter activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006810 "transport" evidence=IDA

GO:0006811 "ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=ISO;IMP

GO:0006821 "chloride transport" evidence=ISO

GO:0015081 "sodium ion transmembrane transporter activity" evidence=ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015377 "cation:chloride symporter activity" evidence=IEA

GO:0015378 "sodium:chloride symporter activity" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=ISO;IDA

GO:0031982 "vesicle" evidence=ISO

GO:0035725 "sodium ion transmembrane transport" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|J9PA00 SLC12A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 152 (58.6 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 34/94 (36%), Positives = 55/94 (58%)

Query:    11 KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWF- 69
             +YGL   F+ + ++S F PL  + + ++ L+ A +SL  AP+VF+ L KD +Y  + +F 
Sbjct:    83 QYGLMNNFQVMSMVSGFGPLITAGIFSATLSSALASLVSAPKVFQALCKDNIYKALQFFA 142

Query:    70 -GRGKTSRP---HVLTTGIAAAFILMSAAKLTKP 99
              G GK + P   ++LT  IA AFIL++      P
Sbjct:   143 KGYGKNNEPLRGYILTFVIAMAFILIAELNTIAP 176

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F6UKR7 SLC12A3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 4.2e-10, P = 4.2e-10
 Identities = 33/94 (35%), Positives = 56/94 (59%)

Query:    11 KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFG 70
             +YGL  Y++++ ++S F+PL  + +  + L+ A + L  A +VF+ L +D LYP IG+FG
Sbjct:   437 RYGLINYYQTMSMVSGFAPLITAGIFGATLSSALACLVSAAKVFQCLCQDQLYPLIGFFG 496

Query:    71 RG--KTSRP---HVLTTGIAAAFILMSAAKLTKP 99
             +G  K   P   ++L   IA AFI+++      P
Sbjct:   497 KGYGKNKEPVRGYLLAYAIAVAFIIIAELNTIAP 530

GO:0016021 "integral to membrane" evidence=IEA

GO:0015377 "cation:chloride symporter activity" evidence=IEA

UNIPROTKB|E2QRQ5 SLC12A3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 4.2e-10, P = 4.2e-10
 Identities = 33/94 (35%), Positives = 56/94 (59%)

Query:    11 KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFG 70
             +YGL  Y++++ ++S F+PL  + +  + L+ A + L  A +VF+ L +D LYP IG+FG
Sbjct:   436 RYGLINYYQTMSMVSGFAPLITAGIFGATLSSALACLVSAAKVFQCLCQDQLYPLIGFFG 495

Query:    71 RG--KTSRP---HVLTTGIAAAFILMSAAKLTKP 99
             +G  K   P   ++L   IA AFI+++      P
Sbjct:   496 KGYGKNKEPVRGYLLAYAIAVAFIIIAELNTIAP 529

GO:0016021 "integral to membrane" evidence=IEA

GO:0015377 "cation:chloride symporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	101
TIGR00930	953	TIGR00930, 2a30, K-Cl cotransporter	1e-14
pfam00324	473	pfam00324, AA_permease, Amino acid permease	1e-07

>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)

Query: 11  KYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFG 70
            YGL    + + L+S F PL  + + ++ L+ A +SL  APR+F+ L KD +YP++ +FG
Sbjct: 370 SYGLMNNLQVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFG 429

Query: 71  R--GKTSRPH---VLTTGIAAAFILMSAAKLTKP 99
           +  GK   P    +LT  IA  FIL++      P
Sbjct: 430 KGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAP 463

[Transport and binding proteins, Other]. Length = 953

>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 12  YGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIG-WFG 70
                 F     IS  +PL  + +LT+ L+ A SSL    RV   L++DGL P       
Sbjct: 269 ASPFVIFFKSLGISGLAPLINAVILTAALSAANSSLYSGSRVLYALARDGLAPKFLKKVD 328

Query: 71  RGKTSRPH---VLTTGIAAAFILMSAAKL 96
           +     P    +L+T I+   +L+++   
Sbjct: 329 KSG--VPLRAILLSTAISLLAVLLASLNP 355

Length = 473

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
KOG2082|consensus	1075		99.9
KOG1288|consensus	945		99.86
TIGR00930	953	2a30 K-Cl cotransporter.	99.68
KOG2083|consensus	643		99.66
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.07
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	98.07
TIGR00909	429	2A0306 amino acid transporter.	98.06
TIGR00906	557	2A0303 cationic amino acid transport permease.	98.05
PRK11021	410	putative transporter; Provisional	97.94
PRK10836	489	lysine transporter; Provisional	97.94
PRK11357	445	frlA putative fructoselysine transporter; Provisio	97.93
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	97.93
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	97.91
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.89
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	97.87
TIGR00913	478	2A0310 amino acid permease (yeast).	97.83
PRK15049	499	L-asparagine permease; Provisional	97.83
TIGR00911	501	2A0308 L-type amino acid transporter.	97.82
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	97.81
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	97.78
PRK11387	471	S-methylmethionine transporter; Provisional	97.74
PRK10249	458	phenylalanine transporter; Provisional	97.74
PRK10197	446	gamma-aminobutyrate transporter; Provisional	97.69
PRK10238	456	aromatic amino acid transporter; Provisional	97.68
PRK10644	445	arginine:agmatin antiporter; Provisional	97.64
PRK10655	438	potE putrescine transporter; Provisional	97.6
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	97.57
KOG1286|consensus	554		97.53
PRK10580	457	proY putative proline-specific permease; Provision	97.51
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	97.42
COG0531	466	PotE Amino acid transporters [Amino acid transport	97.41
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.35
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.35
KOG1287|consensus	479		96.96
PRK10746	461	putative transport protein YifK; Provisional	96.89
COG0833	541	LysP Amino acid transporters [Amino acid transport	96.54
KOG1289|consensus	550		96.22
PRK15238	496	inner membrane transporter YjeM; Provisional	95.56
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	93.92

>KOG2082|consensus

Probab=99.90  E-value=2.3e-25  Score=191.21  Aligned_cols=89  Identities=22%  Similarity=0.325  Sum_probs=84.9

Q ss_pred             hhhhhhhhhhhcccchhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHH
Q psy5317          13 GLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAF   88 (101)
Q Consensus        13 ~L~~~~~v~~~~s~~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~   88 (101)
                      ++.++..|....|++||+|++|.|.||++++||||+||||+|||||||+++|+++.|+|+ +|   .||+++|.+||+++
T Consensus       481 sv~g~lVva~laWPsPwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~aLlLT~~Ice~g  560 (1075)
T KOG2082|consen  481 SVGGNLVVATLAWPSPWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTWALLLTAIICECG  560 (1075)
T ss_pred             hccCcEEEEEecCCCceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCCCCccHHHHHHHHHHHhh
Confidence            467788899999999999999999999999999999999999999999999999999999 55   99999999999999


Q ss_pred             HHHhcccccccCC
Q psy5317          89 ILMSAAKLTKPSF  101 (101)
Q Consensus        89 ilig~Ln~IApi~  101 (101)
                      |++|++|.|||++
T Consensus       561 ILigslD~iApil  573 (1075)
T KOG2082|consen  561 ILIGSLDLIAPIL  573 (1075)
T ss_pred             heeechhHHHHHH
Confidence            9999999999974

>KOG1288|consensus

Probab=99.86  E-value=1.4e-22  Score=173.02  Aligned_cols=92  Identities=22%  Similarity=0.311  Sum_probs=87.4

Q ss_pred             CchhhhhhhhhhhhhcccchhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC----CC-chHHHHHHH
Q psy5317           9 LPKYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG----KT-SRPHVLTTG   83 (101)
Q Consensus         9 ~c~~~L~~~~~v~~~~s~~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g----~~-~~A~llt~~   83 (101)
                      ..|++|++||.+|+.+|.|+|++++||+++|++|++++++||.|+|||||||++||.+.+|+|+    +| +.|+++||+
T Consensus       353 ~~r~~Lq~dy~v~~~isl~p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~  432 (945)
T KOG1288|consen  353 VPRTLLQNDYDVMMHISLHPPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWL  432 (945)
T ss_pred             cchHHhhhchhheeeccccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHH
Confidence            4467999999999999999999999999999999999999999999999999999999999999    35 999999999


Q ss_pred             HHHHHHHHhcccccccC
Q psy5317          84 IAAAFILMSAAKLTKPS  100 (101)
Q Consensus        84 i~~~~ilig~Ln~IApi  100 (101)
                      ++|+++++||+|.||.+
T Consensus       433 lvqlvll~g~~N~iA~~  449 (945)
T KOG1288|consen  433 LVQLVLLWGDINKIASM  449 (945)
T ss_pred             HHHHHHHHhhHHHHHHH
Confidence            99999999999999865

>TIGR00930 2a30 K-Cl cotransporter

Probab=99.68  E-value=3.9e-17  Score=143.40  Aligned_cols=95  Identities=36%  Similarity=0.663  Sum_probs=88.9

Q ss_pred             CCCCchhhhhhhhhhhhhcccchhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC--CC---chHHHH
Q psy5317           6 YTLLPKYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG--KT---SRPHVL   80 (101)
Q Consensus         6 ~~~~c~~~L~~~~~v~~~~s~~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g--~~---~~A~ll   80 (101)
                      ...+|.|+|++++.+++..+.+++++.+|++.+++++++++++++||++||+|||+++|++++|+|+  ++   ++|+++
T Consensus       365 ~~~p~~~gL~~~~~~~~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alll  444 (953)
T TIGR00930       365 AHNTCSYGLMNNLQVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLL  444 (953)
T ss_pred             cccchhhhhcchHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHH
Confidence            3468999999999999999999999999999999999999999999999999999999999999998  32   899999


Q ss_pred             HHHHHHHHHHHhcccccccC
Q psy5317          81 TTGIAAAFILMSAAKLTKPS  100 (101)
Q Consensus        81 t~~i~~~~ilig~Ln~IApi  100 (101)
                      +++++++++++|++|.++|+
T Consensus       445 t~iIa~l~ili~~l~~ia~l  464 (953)
T TIGR00930       445 TAFIAEGFILIAELNTIAPI  464 (953)
T ss_pred             HHHHHHHHHHHHhHHHHHHH
Confidence            99999999999999999985

>KOG2083|consensus

Probab=99.66  E-value=4.2e-17  Score=137.53  Aligned_cols=93  Identities=35%  Similarity=0.605  Sum_probs=90.5

Q ss_pred             CchhhhhhhhhhhhhcccchhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC--CC---chHHHHHHH
Q psy5317           9 LPKYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG--KT---SRPHVLTTG   83 (101)
Q Consensus         9 ~c~~~L~~~~~v~~~~s~~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g--~~---~~A~llt~~   83 (101)
                      +|.+++.+.++++..++.+.|++.+|++++++||+++++.+||+++|+|++|+++|...+|+||  ||   .|+.++++.
T Consensus       297 ~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~  376 (643)
T KOG2083|consen  297 SCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFL  376 (643)
T ss_pred             CCccchHHHHHHHHhHhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999999999999999999999  55   899999999


Q ss_pred             HHHHHHHHhcccccccCC
Q psy5317          84 IAAAFILMSAAKLTKPSF  101 (101)
Q Consensus        84 i~~~~ilig~Ln~IApi~  101 (101)
                      ++..++.+|++|.|||++
T Consensus       377 ~av~fi~igeln~iapii  394 (643)
T KOG2083|consen  377 TAVSFIAIGELNIIAPII  394 (643)
T ss_pred             hHheeEEecccceeccch
Confidence            999999999999999985

>TIGR00908 2A0305 ethanolamine permease

Probab=98.07  E-value=6.9e-06  Score=65.63  Aligned_cols=65  Identities=15%  Similarity=0.112  Sum_probs=54.1

Q ss_pred             HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHHhcccc
Q psy5317          30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILMSAAKL   96 (101)
Q Consensus        30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ilig~Ln~   96 (101)
                      ++.++...+.+++..+.+.+++|+++++|||+.+|  ++|+|. |+   ++|++++.+++.+..+.++.+.
T Consensus       279 ~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP--~~~~~~~~~~~P~~Ail~~~~i~~~~~l~~~~~~  347 (442)
T TIGR00908       279 FVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLP--ESLSKVNRKKAPVLAIVVPGVIGFGLSLTGQTAL  347 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--HHHHHhCCCCCcHHHHHHHHHHHHHHHHhccHHH
Confidence            45556667788899999999999999999999999  678776 43   8999999999988888777654

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=98.07  E-value=8.9e-06  Score=65.87  Aligned_cols=62  Identities=24%  Similarity=0.327  Sum_probs=54.0

Q ss_pred             hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317          28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM   91 (101)
Q Consensus        28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili   91 (101)
                      ..++.+++..+++++..+.+.+++|+++++|||+.+|  ++|+|. |+   ++|++++..+++++.++
T Consensus       279 ~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP--~~f~k~~~~~tP~~al~~~~~i~~~~~l~  344 (468)
T TIGR03810       279 AVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMP--KYFGKENANGAPTNALWLTNGLIQIFLLT  344 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999  778876 43   89999998888776543

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>TIGR00909 2A0306 amino acid transporter

Probab=98.06  E-value=8.4e-06  Score=64.58  Aligned_cols=69  Identities=17%  Similarity=0.189  Sum_probs=57.9

Q ss_pred             chhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC--C-C--chHHHHHHHHHHHHHHHhccccc
Q psy5317          27 FSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG--K-T--SRPHVLTTGIAAAFILMSAAKLT   97 (101)
Q Consensus        27 ~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g--~-~--~~A~llt~~i~~~~ilig~Ln~I   97 (101)
                      ..+++.+++..+.+++.++.+.+++|+++++|||+.+|  ++|+|.  | +  .+|+++..+++.+..+.++.|.+
T Consensus       278 ~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l  351 (429)
T TIGR00909       278 GGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLP--GSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGL  351 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHH
Confidence            34578899999999999999999999999999999999  578875  2 2  78899988888877777766654

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=98.05  E-value=8.7e-06  Score=68.10  Aligned_cols=68  Identities=22%  Similarity=0.290  Sum_probs=58.1

Q ss_pred             hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC--C-C--chHHHHHHHHHHHHHHHhcccccc
Q psy5317          29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG--K-T--SRPHVLTTGIAAAFILMSAAKLTK   98 (101)
Q Consensus        29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g--~-~--~~A~llt~~i~~~~ilig~Ln~IA   98 (101)
                      .++.+|.+.+.+++.++.+.+.+|++.++|||+.+|  ++|+|-  | +  ++|++++.+++.+..++.+++.+.
T Consensus       315 ~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP--~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~  387 (557)
T TIGR00906       315 YIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLF--KWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALV  387 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc--HHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            467789999999999999999999999999999999  688876  2 2  899999999988877777776543

>PRK11021 putative transporter; Provisional

Probab=97.94  E-value=1.9e-05  Score=62.68  Aligned_cols=61  Identities=15%  Similarity=0.114  Sum_probs=49.8

Q ss_pred             hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317          29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM   91 (101)
Q Consensus        29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili   91 (101)
                      +++.+....+.+++..+.+.+++|+++++|||+.+|  ++|+|. |+   ++|++++.+++.+..++
T Consensus       262 ~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~k~~~~~tP~~ail~~~~i~~~~~l~  326 (410)
T PRK11021        262 WVICVIGYLACFASVNIYTQSFARLVWSQAREGRPP--SYLARLSARGVPVNALNAVLGCCAVSILL  326 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc--HHHHhhccCCCcHHHHHHHHHHHHHHHHH
Confidence            455666778888898888999999999999999999  678877 43   79999988877765543

>PRK10836 lysine transporter; Provisional

Probab=97.94  E-value=2.4e-05  Score=63.75  Aligned_cols=63  Identities=25%  Similarity=0.296  Sum_probs=53.6

Q ss_pred             hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHHhc
Q psy5317          29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILMSA   93 (101)
Q Consensus        29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ilig~   93 (101)
                      .++.+++..+.+++..+.+.+++|++.++|||+.+|  ++|+|- |+   ++|++++.+++.+..+.+.
T Consensus       298 ~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP--~~~~kv~~~~~P~~All~~~~~~~l~~l~~~  364 (489)
T PRK10836        298 AVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAP--RIFAKLSRGGVPRNALYATTVIAGLCFLTSM  364 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC--HHHHhhCCCCCcHHHHHHHHHHHHHHHHHHc
Confidence            456678888999999999999999999999999999  678776 33   8999999998887776543

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=97.93  E-value=1.6e-05  Score=63.70  Aligned_cols=69  Identities=20%  Similarity=0.211  Sum_probs=57.0

Q ss_pred             hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC--C-C--chHHHHHHHHHHHHHHHhcccccc
Q psy5317          28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG--K-T--SRPHVLTTGIAAAFILMSAAKLTK   98 (101)
Q Consensus        28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g--~-~--~~A~llt~~i~~~~ilig~Ln~IA   98 (101)
                      .+++.++...+.+++..+.+.+++|+++++|||+.+|  ++|+|-  | +  ++|++++.+++.++++.++++.+.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp--~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~  354 (445)
T PRK11357        281 GIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFF--KCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLL  354 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCch--HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            3456677788889999999999999999999999998  577764  2 2  899999999999888888877643

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=97.93  E-value=2.2e-05  Score=63.71  Aligned_cols=61  Identities=33%  Similarity=0.355  Sum_probs=52.0

Q ss_pred             hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHH
Q psy5317          28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFIL   90 (101)
Q Consensus        28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~il   90 (101)
                      ..++.++...+.+++.++.+.+++|+++++|||+.+|  ++|+|- |+   ++|++++.+++.+..+
T Consensus       283 ~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP--~~~~~v~~~~tP~~Ai~~~~~i~~~~~~  347 (473)
T TIGR00905       283 AVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFP--KIFGRVNKNGAPSVALLLTNILIQLFLL  347 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh--HHHHhhCccCCCHHHHHHHHHHHHHHHH
Confidence            3567888999999999999999999999999999999  678776 32   8999999888775544

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=97.91  E-value=3.5e-05  Score=62.56  Aligned_cols=65  Identities=15%  Similarity=0.337  Sum_probs=53.9

Q ss_pred             chhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC--C-C--chHHHHHHHHHHHHHHH
Q psy5317          27 FSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG--K-T--SRPHVLTTGIAAAFILM   91 (101)
Q Consensus        27 ~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g--~-~--~~A~llt~~i~~~~ili   91 (101)
                      +...+.+.+..+.+++..+.+.+++|++.++|||+.+|+.++|+|-  | +  .+|++++.+++.+..++
T Consensus       297 ~~~~~~~~~~i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i  366 (475)
T TIGR03428       297 WGTVLLVDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLI  366 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            3445666778888999999999999999999999999988888876  2 2  78999998888776655

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.89  E-value=4.1e-05  Score=61.95  Aligned_cols=62  Identities=18%  Similarity=0.315  Sum_probs=52.4

Q ss_pred             HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-C--C--chHHHHHHHHHHHHHHH
Q psy5317          30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-K--T--SRPHVLTTGIAAAFILM   91 (101)
Q Consensus        30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~--~--~~A~llt~~i~~~~ili   91 (101)
                      ++.+.+..+.+++..+.+.+++|++.++|||+.+|+-++|+|- |  +  ++|++++.+++.+..++
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~  373 (482)
T TIGR00907       307 FLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLL  373 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            5667788888999999999999999999999999977788876 3  3  89999998887765544

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.87  E-value=6.9e-07  Score=72.14  Aligned_cols=70  Identities=23%  Similarity=0.367  Sum_probs=56.2

Q ss_pred             ccchhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHHhccc
Q psy5317          25 SAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILMSAAK   95 (101)
Q Consensus        25 s~~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ilig~Ln   95 (101)
                      ...+.++.++++.++++++++++.+++|+++++|||+..| -+++++- |+   ++|++++.+++.+..+.++++
T Consensus       286 ~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~dg~lP-~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~  359 (478)
T PF00324_consen  286 PWLAWIVNAGILISAFSSANASLYAASRLLYAMARDGLLP-KKFFARHPKNGVPYVAILVSSIISLLVLLLGSFS  359 (478)
T ss_pred             ccccceecccchhhhhhhhhhhhcccceeehhhhhhhhhh-hhhhhhhhcCCceEEEEeeehhchheeeeeccch
Confidence            3445688899999999999999999999999999999999 1223322 33   899999999888887766554

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=97.83  E-value=4.1e-05  Score=61.80  Aligned_cols=61  Identities=25%  Similarity=0.309  Sum_probs=52.0

Q ss_pred             hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHH
Q psy5317          28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFIL   90 (101)
Q Consensus        28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~il   90 (101)
                      ..++.++++.+.+++..+.+.+++|+++++|||+.+|  ++|+|- |+   ++|++++.+++.+..+
T Consensus       290 ~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~f~k~~~~~~P~~Ai~~~~~~~~l~~l  354 (478)
T TIGR00913       290 PHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAP--KIFAYVDRRGVPYVAVIVSSLFGLLAFL  354 (478)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCccc--HHHHhhCCCCCCHHHHHHHHHHHHHHHH
Confidence            3467788899999999999999999999999999999  678876 43   8899998888766544

>PRK15049 L-asparagine permease; Provisional

Probab=97.83  E-value=4.2e-05  Score=62.96  Aligned_cols=61  Identities=18%  Similarity=0.254  Sum_probs=52.2

Q ss_pred             hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317          29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM   91 (101)
Q Consensus        29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili   91 (101)
                      .++.+.++.+.+++..+.+.+++|++.++|||+.+|  ++|+|- |+   ++|++++++++.+.+++
T Consensus       305 ~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP--~~f~kv~k~~~P~~Ail~~~~i~~l~~~l  369 (499)
T PRK15049        305 SIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAP--SFMAKMSRQHVPYAGILATLVVYVVGVFL  369 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC--HHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            567788899999999999999999999999999999  788876 43   89999998887665443

>TIGR00911 2A0308 L-type amino acid transporter

Probab=97.82  E-value=3.2e-05  Score=63.08  Aligned_cols=68  Identities=13%  Similarity=0.036  Sum_probs=55.1

Q ss_pred             hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-C--C--chHHHHHHHHHHHHHHHhccccc
Q psy5317          28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-K--T--SRPHVLTTGIAAAFILMSAAKLT   97 (101)
Q Consensus        28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~--~--~~A~llt~~i~~~~ilig~Ln~I   97 (101)
                      .+++.+.+..+.+++..+.+.+++|+++++|||+.+|+  +|+|- +  +  .+|++++.+++.+..+.+++..+
T Consensus       318 ~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~lP~--~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l  390 (501)
T TIGR00911       318 SWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPS--LLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSL  390 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccH--HHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence            45667778889999999999999999999999999995  56654 2  2  78999988888877777766543

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=97.81  E-value=5.1e-05  Score=60.93  Aligned_cols=62  Identities=23%  Similarity=0.252  Sum_probs=52.9

Q ss_pred             hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317          28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM   91 (101)
Q Consensus        28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili   91 (101)
                      +.++.+++..+.+++..+.+.+++|++.++|||+.+|  ++|+|- |+   .+|++++.+++.+..++
T Consensus       286 ~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP--~~~~~v~~~~~P~~Ail~~~~~~~~~~l~  351 (452)
T TIGR01773       286 KLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAP--RVFMKLNKKGVPVQAVLASTFFSFLTVVV  351 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--HHHHhhCCCCCcHHHHHHHHHHHHHHHHH
Confidence            3466678889999999999999999999999999999  778876 33   89999998888877655

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=97.78  E-value=0.00012  Score=57.68  Aligned_cols=62  Identities=19%  Similarity=0.328  Sum_probs=53.9

Q ss_pred             cchhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHH
Q psy5317          26 AFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFI   89 (101)
Q Consensus        26 ~~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~i   89 (101)
                      ...+++.++...+.+++..+.+.+++|++.++|||+.+|  ++|+|. |+   ++|+++..+++.++.
T Consensus       271 ~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~k~~~P~~a~~~~~~i~~i~~  336 (426)
T PF13520_consen  271 WLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLP--KWFAKVNKFGTPYNAIILVAVISSILL  336 (426)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--GGGGTTSSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhcchhhcccccccccchh--hhhhhccccCCceeeehhhhHHHHHHH
Confidence            455678899999999999999999999999999999999  788877 43   899999998886553

...

>PRK11387 S-methylmethionine transporter; Provisional

Probab=97.74  E-value=7.1e-05  Score=60.68  Aligned_cols=59  Identities=25%  Similarity=0.272  Sum_probs=48.8

Q ss_pred             hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHH
Q psy5317          29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFI   89 (101)
Q Consensus        29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~i   89 (101)
                      .++.+++..+.+++..+++.+++|++.++|||+.+|  ++|+|. |+   ++|++++.+++.+.+
T Consensus       291 ~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~f~~~~~~~~P~~Ail~~~~~~~l~~  353 (471)
T PRK11387        291 DIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLP--ACFARLTKRGIPLTALSVSMLGGLLAL  353 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcC--HHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence            466788899999999999999999999999999999  678876 43   788888866554443

>PRK10249 phenylalanine transporter; Provisional

Probab=97.74  E-value=6.6e-05  Score=60.87  Aligned_cols=61  Identities=20%  Similarity=0.286  Sum_probs=51.1

Q ss_pred             hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317          29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM   91 (101)
Q Consensus        29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili   91 (101)
                      .++.+.++.+.+++..+.+.+++|+++++|||+.+|  ++|+|. |+   ++|++++.+++.+..++
T Consensus       294 ~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~kv~~~~~P~~All~~~~i~~l~~l~  358 (458)
T PRK10249        294 SALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAP--KFLTRVSRRGVPINSLMLSGAITSLVVLI  358 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC--HHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            345567788999999999999999999999999999  678876 43   89999999888776554

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=97.69  E-value=9.8e-05  Score=59.67  Aligned_cols=61  Identities=26%  Similarity=0.354  Sum_probs=51.4

Q ss_pred             hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317          29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM   91 (101)
Q Consensus        29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili   91 (101)
                      .++.+++..+.+++..+.+.+++|++.++|||+.+|  ++|+|. |+   ++|++++.+++.+..+.
T Consensus       267 ~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP--~~~~~~~~~~~P~~Ail~~~~~~~l~~l~  331 (446)
T PRK10197        267 LIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAP--AVMGKINRSKTPYVAVLLSTGAAFLTVVV  331 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC--HHHHhhCcCCCcHHHHHHHHHHHHHHHHH
Confidence            456677888999999999999999999999999999  578876 32   89999998877766554

>PRK10238 aromatic amino acid transporter; Provisional

Probab=97.68  E-value=0.0001  Score=59.72  Aligned_cols=61  Identities=20%  Similarity=0.208  Sum_probs=51.6

Q ss_pred             hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317          29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM   91 (101)
Q Consensus        29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili   91 (101)
                      .++.+.++.+.+++..+.+.+++|++.++|||+.+|  ++|+|- |+   ++|++++.+++.+..++
T Consensus       285 ~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP--~~f~kv~~~~~P~~Ail~~~~i~~l~~l~  349 (456)
T PRK10238        285 NALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAP--KALASVDKRGVPVNTILVSALVTALCVLI  349 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhCcCCCcHHHHHHHHHHHHHHHHH
Confidence            355677788889999999999999999999999999  788876 43   89999999988777654

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=97.64  E-value=0.00014  Score=58.45  Aligned_cols=61  Identities=18%  Similarity=0.162  Sum_probs=51.0

Q ss_pred             hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317          29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM   91 (101)
Q Consensus        29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili   91 (101)
                      .++.++...+++++..+.+.+++|+++++|||+.+|  ++|+|. |+   ++|++++.+++.+..+.
T Consensus       276 ~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP--~~~~~v~~~~tP~~Ai~~~~~i~~l~~l~  340 (445)
T PRK10644        276 AIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFP--PIFARVNKAGTPVAGLLIVGVLMTIFQLS  340 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhCcCCCCHHHHHHHHHHHHHHHHH
Confidence            456678888888888888999999999999999999  788876 43   89999999988776554

>PRK10655 potE putrescine transporter; Provisional

Probab=97.60  E-value=0.00015  Score=57.98  Aligned_cols=61  Identities=16%  Similarity=0.260  Sum_probs=51.0

Q ss_pred             hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHH
Q psy5317          28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFIL   90 (101)
Q Consensus        28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~il   90 (101)
                      ..++.++...+.+++..+.+.+++|++.+++||+.+|  ++|+|. |+   ++|++++.+++.+..+
T Consensus       273 ~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~v~~~~tP~~all~~~~i~~~l~l  337 (438)
T PRK10655        273 GKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFP--KIFSRVTKVDAPVQGMLIIVVIQSLLSL  337 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh--HHHHhhCcCCCCHHHHHHHHHHHHHHHH
Confidence            3467778888999999999999999999999999999  678876 43   7899998887766544

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=97.57  E-value=0.00019  Score=58.28  Aligned_cols=58  Identities=21%  Similarity=0.244  Sum_probs=48.1

Q ss_pred             hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHH
Q psy5317          28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAA   87 (101)
Q Consensus        28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~   87 (101)
                      ..++.+.+..+.+++..+.+.+++|+++++|||+.+|  ++|+|- |+   ++|++++.+++.+
T Consensus       295 ~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~kv~~~~tP~~Ai~~~~~~~~~  356 (469)
T PRK11049        295 ASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAP--KAFAKLSKRAVPAKGLTFSCICLLG  356 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--HHHHhhCCCCCCHHHHHHHHHHHHH
Confidence            3466778889999999999999999999999999999  678776 32   8898888776543

>KOG1286|consensus

Probab=97.53  E-value=0.00023  Score=60.40  Aligned_cols=63  Identities=27%  Similarity=0.300  Sum_probs=54.1

Q ss_pred             HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-C--C-chHHHHHHHHHHHHHHHhcc
Q psy5317          30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-K--T-SRPHVLTTGIAAAFILMSAA   94 (101)
Q Consensus        30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~--~-~~A~llt~~i~~~~ilig~L   94 (101)
                      ++-+|++.+.+|++++++..+||++.++|+|+..|+  +|++- +  . ..|.+++.+.+.+..+.-++
T Consensus       323 ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk--~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~  389 (554)
T KOG1286|consen  323 IVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPK--FFARVDRRGVPLVAVLVSGLFGALAALNFSL  389 (554)
T ss_pred             hhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcch--HHhhcCCCCCchhHHHHHHHHHHHHHHHhcc
Confidence            778999999999999999999999999999999995  56655 2  2 78888888888777777666

>PRK10580 proY putative proline-specific permease; Provisional

Probab=97.51  E-value=0.00026  Score=57.11  Aligned_cols=58  Identities=17%  Similarity=0.206  Sum_probs=46.6

Q ss_pred             hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHH
Q psy5317          29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAF   88 (101)
Q Consensus        29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~   88 (101)
                      .++.+.+..+.+++..+.+.+++|+++++|||+.+|  ++|+|- |+   ++|++++.++..+.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP--~~~~kv~~~~~P~~Ai~~~~~~~~~~  345 (457)
T PRK10580        284 SILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAP--KIFSKTSRRGIPWVTVLVMTTALLFA  345 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--HHHHhhCCCCCcHHHHHHHHHHHHHH
Confidence            355567778889999999999999999999999999  678776 43   78888887655443

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=97.42  E-value=0.0004  Score=55.81  Aligned_cols=58  Identities=21%  Similarity=0.183  Sum_probs=48.2

Q ss_pred             hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHH
Q psy5317          29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAF   88 (101)
Q Consensus        29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~   88 (101)
                      +++.++...+.+++..+.+...+|..+++|||+.+|  ++|+|. |+   ++|++++.+++.+.
T Consensus       272 ~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP--~~f~k~nk~g~P~~Al~~~~~~~~~l  333 (435)
T PRK10435        272 PLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFP--KVYGEVDKNGIPKKGLLLAAVKMTAL  333 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhCcCCCCHHHHHHHHHHHHHH
Confidence            455567788889998899999999999999999999  678887 43   78998887776554

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=97.41  E-value=0.00037  Score=54.90  Aligned_cols=61  Identities=20%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             cchhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC----chHHHHHHHHHHHH
Q psy5317          26 AFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT----SRPHVLTTGIAAAF   88 (101)
Q Consensus        26 ~~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~----~~A~llt~~i~~~~   88 (101)
                      .+.+++.++.+.+++++..+...+.+|++++++||+.+|.  +|+|- ++    .+|++++.+++.+.
T Consensus       285 ~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~--~~~~~~~~~~~P~~a~~~~~ii~~~l  350 (466)
T COG0531         285 WGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPK--FFAKVNPKGRTPVIALILTGIISLIL  350 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH--HHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999999999999997  66655 22    78888888888833

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.35  E-value=0.00059  Score=55.30  Aligned_cols=57  Identities=14%  Similarity=0.177  Sum_probs=45.7

Q ss_pred             hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHH
Q psy5317          29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAA   87 (101)
Q Consensus        29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~   87 (101)
                      +++.+++..+.+++..+.+.+++|.+.++|||+.+|  ++|+|- |+   ++|++++.+++.+
T Consensus       282 ~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP--~~~~kv~k~~~P~~a~~~~~~~~~~  342 (474)
T TIGR03813       282 PILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLP--TFFQKTNKNGMPIHIMFVQGIAVSV  342 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--HHHhccCCCCCcHHHHHHHHHHHHH
Confidence            455566777788888888899999999999999999  678876 43   7888888876544

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.35  E-value=0.00049  Score=56.86  Aligned_cols=57  Identities=16%  Similarity=0.109  Sum_probs=47.2

Q ss_pred             HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHH
Q psy5317          30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAF   88 (101)
Q Consensus        30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~   88 (101)
                      ++.+.+..+.+++..+.+.+++|.+++.|||+.+|  ++|+|- |+   .+|++++.+++.+.
T Consensus       285 ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~lP--~~~~k~nk~~~P~~a~~~~~~i~~l~  345 (507)
T TIGR00910       285 VIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLP--AAFAKMNKHEVPVPLVIIQGIITSIA  345 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcC--HHHHhhCcCCCcHHHHHHHHHHHHHH
Confidence            55566777778888888999999999999999999  678876 43   88999988887664

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>KOG1287|consensus

Probab=96.96  E-value=0.0017  Score=54.53  Aligned_cols=72  Identities=13%  Similarity=0.047  Sum_probs=61.5

Q ss_pred             cchhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC--chHHHHHHHHHHHHHHHhccccc
Q psy5317          26 AFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT--SRPHVLTTGIAAAFILMSAAKLT   97 (101)
Q Consensus        26 ~~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~--~~A~llt~~i~~~~ilig~Ln~I   97 (101)
                      .|.|.+-+.+-.+++++..+.+..+.|.+|+.||++.+|..-...+. .+  +.|++++.+++.+.++++|+|++
T Consensus       285 ~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~L  359 (479)
T KOG1287|consen  285 VFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQL  359 (479)
T ss_pred             chHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHH
Confidence            46678888999999999999999999999999999999975444333 32  88999999999999999998764

>PRK10746 putative transport protein YifK; Provisional

Probab=96.89  E-value=0.0024  Score=51.97  Aligned_cols=54  Identities=19%  Similarity=0.186  Sum_probs=44.3

Q ss_pred             hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHH
Q psy5317          29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGI   84 (101)
Q Consensus        29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i   84 (101)
                      .++.+.++.+.+|++.+.+++++|.+.++|||+..|+  +|+|- |+   ++|++++.+.
T Consensus       285 ~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~--~~~~~~~~g~P~~al~~~~~~  342 (461)
T PRK10746        285 GIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPA--AMAKVSRHGVPVAGVAVSILI  342 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCH--HHHHhCCCCCcHHHHHHHHHH
Confidence            3556677889999999999999999999999999995  57766 43   7888877544

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=96.54  E-value=0.0044  Score=52.78  Aligned_cols=62  Identities=26%  Similarity=0.286  Sum_probs=52.2

Q ss_pred             HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHHhc
Q psy5317          30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILMSA   93 (101)
Q Consensus        30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ilig~   93 (101)
                      ++-+=|+.|.+|++=++++.++|.|.+||+|+--|+  +|+|- |+   .+|++.|..++.+..+-.+
T Consensus       328 imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk--~f~~~~r~GvP~~al~vt~~fg~lafl~~~  393 (541)
T COG0833         328 IMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPK--IFAKVDRRGVPLVALLVTLLFGLLAFLNSS  393 (541)
T ss_pred             HHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCch--HHHhhCCCCCchHHHHHHHHHHHHHHHHhc
Confidence            556778999999999999999999999999999995  67766 43   8999999998887765433

>KOG1289|consensus

Probab=96.22  E-value=0.0092  Score=50.94  Aligned_cols=57  Identities=18%  Similarity=0.296  Sum_probs=45.7

Q ss_pred             HHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC----chHHHHHHHHHHHHHHH
Q psy5317          35 VLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT----SRPHVLTTGIAAAFILM   91 (101)
Q Consensus        35 i~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~----~~A~llt~~i~~~~ili   91 (101)
                      ++.+.+..+.++++.++|+.+|-|||+.+|+-++++|- |.    ..|+++..+++.+..++
T Consensus       347 ~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll  408 (550)
T KOG1289|consen  347 IIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLL  408 (550)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            45566777888999999999999999999999888876 32    78888888776655443

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=95.56  E-value=0.03  Score=45.85  Aligned_cols=60  Identities=15%  Similarity=0.134  Sum_probs=47.7

Q ss_pred             HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317          30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM   91 (101)
Q Consensus        30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili   91 (101)
                      ++.+++..+.+++..+...+..|.+++.++|+.+|  ++|+|- |+   .+|++++.+++.+.++.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P--~~f~k~nk~g~P~~a~~~~~~i~~l~~~~  382 (496)
T PRK15238        319 ITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWP--KKMTKLNKNGMPANAMWLQCIIVSVFILL  382 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCccc--HHHHhhCcCCCcHHHHHHHHHHHHHHHHH
Confidence            44577788888888888889999999999999999  577776 43   88999888877755433

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=93.92  E-value=0.037  Score=46.51  Aligned_cols=59  Identities=24%  Similarity=0.280  Sum_probs=48.8

Q ss_pred             HHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHHhccccccc
Q psy5317          36 LTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILMSAAKLTKP   99 (101)
Q Consensus        36 ~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ilig~Ln~IAp   99 (101)
                      +.|.+|+.=++++++.|.|..+|+|+--|  +.|+|- |+   ++|+++|.+...++++   ||.+.|
T Consensus       295 LtAa~S~~NSglystsRmL~~la~~g~AP--k~~~klsk~gVP~~ai~~s~~~~~~~V~---Lny~~P  357 (462)
T COG1113         295 LTAALSALNSGLYSTSRMLYSLAKQGDAP--KAFAKLSKRGVPVNAILLSAVVLLLGVV---LNYILP  357 (462)
T ss_pred             eechhhcccccccccchHHHHHhhcCccc--HhHhhccccCCCHHHHHHHHHHHHHHHH---HHhhcc
Confidence            56788999999999999999999999999  467777 54   8999999888877765   566555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.63
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.23
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.18

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.63  E-value=4e-08  Score=75.82  Aligned_cols=69  Identities=20%  Similarity=0.207  Sum_probs=61.3

Q ss_pred             hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC--chHHHHHHHHHHHHHHHhccccccc
Q psy5317          29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT--SRPHVLTTGIAAAFILMSAAKLTKP   99 (101)
Q Consensus        29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~--~~A~llt~~i~~~~ilig~Ln~IAp   99 (101)
                      .++.++.+.+.+++..+.+.+++|+++++|||+.+|  ++|+|. ++  .+|++++.+++.++.+++++|.+.+
T Consensus       274 ~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP--~~f~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~  345 (444)
T 3gia_A          274 LLISIGALFSISSAMNATIYGGANVAYSLAKDGELP--EFFERKVWFKSTEGLYITSALGVLFALLFNMEGVAS  345 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCC--SSCCTTSCCSCTHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--HHHhCCCCCCCcHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            467789999999999999999999999999999999  678877 33  8999999999999988888887654

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.23  E-value=1.2e-06  Score=68.71  Aligned_cols=64  Identities=17%  Similarity=0.157  Sum_probs=52.3

Q ss_pred             hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHH-HHHHHHHhc
Q psy5317          28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGI-AAAFILMSA   93 (101)
Q Consensus        28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i-~~~~ilig~   93 (101)
                      ..++.+++..+.+++..+.+.+++|+++++|||+.+|  ++|+|. |+   .+|++++.++ +..++.+++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~~~~~~~~P~~ai~~~~~~~~l~~~~~~~  358 (511)
T 4djk_A          290 VRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLP--AAFAKMNKNGVPVTLVISQLVITSIALIILTN  358 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCS--SSCCCCCSSSCCCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc--HHHHhcCCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            4577889999999999999999999999999999999  788887 43   8899888444 444455555

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.18  E-value=2.9e-06  Score=65.21  Aligned_cols=63  Identities=17%  Similarity=0.147  Sum_probs=54.2

Q ss_pred             chhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317          27 FSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM   91 (101)
Q Consensus        27 ~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili   91 (101)
                      ...++.+++..+.+++..+.+.+++|+++++|||+.+|  ++|+|. |+   ++|++++.+++.+..++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~~~~~~~P~~a~~~~~~~~~~~~~~  340 (445)
T 3l1l_A          274 AGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFP--PIFARVNKAGTPVAGLIIVGILMTIFQLS  340 (445)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSC--GGGGCCCTTCCCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--HHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999  678877 43   89999999887766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00