Psyllid ID: psy535

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460
Protein Sequence
MNTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK
Secondary Structure (PSIPRED)
cccccccccccEEEEEccEEEEccccccccEEEEEEEEEcccccccEEEEEEEEcccEEEEcccEEEEEccccEEEEEEccccccccEEEEEEccEEccccccccEEEcccccEEEEcccccccEEEEEEEEccccccccEEEEEEEEccccEEEEcccccEEEccccEEEEEEEEEccccccccEEEEEEccEEccccccEEEEccEEEEEcccccccEEEEEEEEEccccEEEEEEEEEEcccccccccEEEEEEccEEEEEEEcccccccccEEEEEEEEEEccccccEEEEEEccccEEEEEccccccccEEEEEEEEcccccccccccEEEccccccccccccEEEEEEccEEEEEEEccccccccccEEEEEEEEcccccccccccccccccccccEEEcccccccEEEEEccccccEEEEcccccccEEEEEEEEEcccccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccccEccccccEEEEcccEEEEEccccccccEEEEEEEcccccEccccEEEEEEcccccccccccEEEEcccEEEEEEEEcccccccEEEEEEccEEcccccccEEEEccccEEEEEcccccccEEEEEEEEEcccccccccEEEEEEcccccccccccccEEEEcccEEEEEEEccccccccccEEEEEEccccccccccEEccccEEEEccccHHHcEEEEEEEEEcccccccccEEEEEccccccccccEEEEcccEEEEEEEcccccccccEEEEEEEEEccccccccEEEEEcccccEEEEEccccccEEEEEEEEEEcccccccccEEEEEcccccccccccEEEEEcccEEEEEEcccccccccEEEEEEEEEEcccccccccccccccccEEEEEEccccccccEEEEEEcccccEEEEEccccccEEEEEEEEEEccccccccccEEEEcc
Coil and Loop (DISEMBL)
MNTKVGSLETRVVIKkdgtlvinpvgsddsglymcevsngigepqaAQAYlnvefpakvtftptvqylpfrlqGVVQchikanptfqyvtwtkdkrllepyqtkdIVVMQNGSLLFTRVnqnhqgrytctpynahgtqgssgqmevlvrkppaftikpeamyqrkvgesvDMHCEAqeaegtqkptitwqrrdgvalpknrvkivggnitieglrrvdFGYYECVVSNEVATIVQAAQLVVegtqphapynitgVATEFSVTlewlpgysggpdlkqNYVIWYREQgnkdwlpipvtppgstqitinrltpattyefqvvgknelgdgmlSNIVVVktkgpkpgpprnvsvtevnngfviswqppleRASLIQYYLIKYRtdgswktlnkgqirpeensylgeyreqgnkdwlpipvtppgstqitinrltpattyefqvvgknelgdgmlsnIVVVKTK
Flexible Loop (DISEMBL)
mntkvgsletrvvikkdgtlvinpvgsddSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANptfqyvtwtkdKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQeaegtqkptitwqrrdgvalpknrvkivggnitieglrrvDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKtkgpkpgpprnvsvTEVNNGFviswqppleRASLIQYYLIKYRtdgswktlnkgqirpEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVgknelgdgmlsnivvvktk
Low Complexity Region (SEG)
MNTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIvvvktkgpkpgppRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK
Disordered region (IsUnstruct)
*********TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH******************FT******************************TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT***********SVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIR****SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV***
Disordered Region (DISOPRED)
***********VVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG*************NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV**************ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL*********************************VISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI**VKT*
Disordered Region (DISEMBL)
MNTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK
Disordered Region (DISPRO)
***KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV*K**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	460	2.2.26 [Sep-21-2011]
Q967D7	1531	Protein turtle OS=Drosoph	yes	N/A	0.865	0.259	0.673	1e-174
Q9UPX0	1349	Protein turtle homolog B	yes	N/A	0.819	0.279	0.339	1e-62
Q9P2J2	1179	Protein turtle homolog A	no	N/A	0.882	0.344	0.305	3e-54
P0C5H6	1179	Protein turtle homolog A	no	N/A	0.828	0.323	0.311	1e-53
Q05BQ1	1179	Protein turtle homolog A	no	N/A	0.828	0.323	0.311	2e-53
P97603	1377	Neogenin (Fragment) OS=Ra	no	N/A	0.891	0.297	0.278	2e-34
P97798	1493	Neogenin OS=Mus musculus	no	N/A	0.9	0.277	0.273	2e-32
Q92859	1461	Neogenin OS=Homo sapiens	no	N/A	0.889	0.279	0.282	1e-31
Q63155	1445	Netrin receptor DCC OS=Ra	no	N/A	0.765	0.243	0.275	7e-31
P70211	1447	Netrin receptor DCC OS=Mu	no	N/A	0.765	0.243	0.275	2e-30

>sp|Q967D7|TUTL_DROME Protein turtle OS=Drosophila melanogaster GN=tutl PE=2 SV=2

 Score =  613 bits (1580), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 289/429 (67%), Positives = 343/429 (79%), Gaps = 31/429 (7%)

Query: 4   KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
           +V +LETRV I+KDG+L+INP+  DDSG Y+CEV+NGIG+PQ+A AYL+VE+PAKVTFTP
Sbjct: 388 EVAALETRVTIRKDGSLIINPIKPDDSGQYLCEVTNGIGDPQSASAYLSVEYPAKVTFTP 447

Query: 64  TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH 123
           TVQYLPFRL GVVQC+IK++P  QYVTWTKDKRLLEPYQ KDIVVM NGSLLFTRVN+ H
Sbjct: 448 TVQYLPFRLAGVVQCYIKSSPQLQYVTWTKDKRLLEPYQMKDIVVMANGSLLFTRVNEEH 507

Query: 124 QGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ 183
           QG+Y CTPYNA GT G+SG M+VLVRKPPAFT++PE +YQRKVG+SV+MHC+A EAEGT+
Sbjct: 508 QGQYACTPYNAQGTAGASGVMDVLVRKPPAFTVEPETLYQRKVGDSVEMHCDALEAEGTE 567

Query: 184 KPTITWQRRDGVALP---KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV 240
           +PTI WQR++G  L    +NR+KI GGNITIE LRR DFGYY+CVVSNEVAT++   QLV
Sbjct: 568 RPTIKWQRQEGEQLTESQRNRIKISGGNITIENLRREDFGYYQCVVSNEVATLMAVTQLV 627

Query: 241 VEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPG 300
           +EGTQPHAPYNITG ATE S+TL+WLPGYSGG + KQ+Y IW+RE G  DW  I VTP G
Sbjct: 628 IEGTQPHAPYNITGKATESSITLQWLPGYSGGSEYKQDYTIWFREAGVNDWQTISVTPSG 687

Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT---------------------- 338
           STQ+TIN L   TTYEFQVVG+N LGDGM+S ++ V+T                      
Sbjct: 688 STQVTINGLASGTTYEFQVVGRNVLGDGMMSKVMTVRTLEDAPAAPRNVKAATQPPDSFF 747

Query: 339 ------KGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQ 392
                  GPKPGPPRNVSVTEV+NGF+I+WQ PLERA ++++Y IKYRTD  WKTLN+GQ
Sbjct: 748 QLMPDEAGPKPGPPRNVSVTEVSNGFLITWQSPLERAHIVKFYTIKYRTDAQWKTLNRGQ 807

Query: 393 IRPEENSYL 401
           IRPEE  YL
Sbjct: 808 IRPEETQYL 816

Essential protein that plays a role in the establishment of coordinated motor control.
Drosophila melanogaster (taxid: 7227)

>sp|Q9UPX0|TUTLB_HUMAN Protein turtle homolog B OS=Homo sapiens GN=IGSF9B PE=2 SV=2

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 134/395 (33%), Positives = 203/395 (51%), Gaps = 18/395 (4%)

Query: 8   LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
           L+ RV I  DGTL+I  V  +DSG Y C  SN +G   +A AYL V++PA+V   P V Y
Sbjct: 276 LKLRVRILIDGTLIIFRVKPEDSGKYTCVPSNSLGRSPSASAYLTVQYPARVLNMPPVIY 335

Query: 68  LPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRY 127
           +P  + G ++C + A P    V W KD R L+  +     +M++GS+      +   G Y
Sbjct: 336 VPVGIHGYIRCPVDAEPPATVVKWNKDGRPLQVEKNLGWTLMEDGSIRIEEATEEALGTY 395

Query: 128 TCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTI 187
           TC PYN  GT G S    ++++ PP FT+ P   Y+++ G  + + C A    G   P I
Sbjct: 396 TCVPYNTLGTMGQSAPARLVLKDPPYFTVLPGWEYRQEAGRELLIPCAAA---GDPFPVI 452

Query: 188 TWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH 247
           TW R+ G         +  G++    L + D G +ECV +N V +I  +  L V GT PH
Sbjct: 453 TW-RKVGKPSRSKHSALPSGSLQFRALSKEDHGEWECVATNVVTSITASTHLTVIGTSPH 511

Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ--GNKDWLPIPVTPPGSTQIT 305
           AP ++    +  +  + W PGY GG   +Q + +W +    G  DWL +PV PPG + + 
Sbjct: 512 APGSVRVQVSMTTANVSWEPGYDGG--YEQTFSVWMKRAQFGPHDWLSLPV-PPGPSWLL 568

Query: 306 INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG-----PKP----GPPRNVSVTEVNN 356
           ++ L P T Y+F V+ +N+LG    S +V V T       P+P     PPR +       
Sbjct: 569 VDTLEPETAYQFSVLAQNKLGTSAFSEVVTVNTLAFPITTPEPLVLVTPPRCLIANRTQQ 628

Query: 357 GFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKG 391
           G ++SW PP   +  I  Y++++R    W+ L+ G
Sbjct: 629 GVLLSWLPPANHSFPIDRYIMEFRVAERWELLDDG 663

Homo sapiens (taxid: 9606)

>sp|Q9P2J2|TUTLA_HUMAN Protein turtle homolog A OS=Homo sapiens GN=IGSF9 PE=1 SV=2

 Score =  213 bits (542), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 141/462 (30%), Positives = 218/462 (47%), Gaps = 56/462 (12%)

Query: 4   KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
            +  L+ RV I  DG+L +     DD+G Y C  SNG+  P +A AYL V +PA+VT  P
Sbjct: 270 HISRLQPRVRILVDGSLRLLATQPDDAGCYTCVPSNGLLHPPSASAYLTVLYPAQVTAMP 329

Query: 64  TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH 123
               LP  + GV++C ++ANP   +V+WTKD + L+  +         GSL+    N++ 
Sbjct: 330 PETPLPIGMPGVIRCPVRANPPLLFVSWTKDGKALQLDKFPGWSQGTEGSLIIALGNEDA 389

Query: 124 QGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ 183
            G Y+CTPYN+ GT G S    VL++ PPAF  +P+  Y ++VG  + + C AQ   G  
Sbjct: 390 LGEYSCTPYNSLGTAGPSPVTRVLLKAPPAFIERPKEEYFQEVGRELLIPCSAQ---GDP 446

Query: 184 KPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
            P ++W +  G  L          ++ +  L +   G++EC  SN VA +  +  + V G
Sbjct: 447 PPVVSWTKV-GRGLQGQAQVDSNSSLILRPLTKEAHGHWECSASNAVARVATSTNVYVLG 505

Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYR------EQGNKDWLPIPVT 297
           T PH   N++ VA      + W PG+ GG    Q + +WY       ++ + DW+ + V 
Sbjct: 506 TSPHVVTNVSVVALPKGANVSWEPGFDGG--YLQRFSVWYTPLAKRPDRMHHDWVSLAV- 562

Query: 298 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG----------------P 341
           P G+  + +  L P T Y+F V+ +N+LG G  S IV+   +G                P
Sbjct: 563 PVGAAHLLVPGLQPHTQYQFSVLAQNKLGSGPFSEIVLSAPEGLPTTPAAPGLPPTEIPP 622

Query: 342 KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
              PPR +       G ++ W PP          L+  R DG                Y+
Sbjct: 623 PLSPPRGLVAVRTPRGVLLHWDPP---------ELVPKRLDG----------------YV 657

Query: 402 GEYREQGNKDWLPI-PVTPPGSTQITINRLTPATTYEFQVVG 442
            E R QG++ W  + P      T++ +  L     YEF++V 
Sbjct: 658 LEGR-QGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVA 698

Functions in dendrite outgrowth and synapse maturation.

Homo sapiens (taxid: 9606)

>sp|P0C5H6|TUTLA_RAT Protein turtle homolog A OS=Rattus norvegicus GN=Igsf9 PE=1 SV=1

 Score =  211 bits (536), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/411 (31%), Positives = 203/411 (49%), Gaps = 30/411 (7%)

Query: 4   KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
            +  L++RV I  DG+L +     DD+G Y C  SNG   P +A AYL V +PA+VT  P
Sbjct: 270 HISRLQSRVRILVDGSLWLQATQPDDAGHYTCVPSNGFPHPPSASAYLTVLYPAQVTVMP 329

Query: 64  TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH 123
               LP  ++GV++C ++ANP   +VTWTKD + L+  +     +   GSL+    N++ 
Sbjct: 330 PETPLPIGMRGVIRCPVRANPPLLFVTWTKDGQALQLDKFPGWSLGPEGSLVIALGNEDA 389

Query: 124 QGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ 183
            G Y+CTPYN+ GT GSS    VL++ PPAF  +P+  Y ++VG  + + C A+   G  
Sbjct: 390 LGEYSCTPYNSLGTAGSSPVTRVLLKAPPAFIDQPKEEYFQEVGRDLLIPCSAR---GDP 446

Query: 184 KPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
            P ++W +  G  L          ++ +  L +   G +EC   N VA +  +  + V G
Sbjct: 447 PPIVSWAKV-GRGLQGQAQVDSNNSLILRPLTKEAHGRWECSARNAVAHVTISTNVYVLG 505

Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYR------EQGNKDWLPIPVT 297
           T PH   N++ V       + W PG+ GG    Q + +WY       ++ + DW+ + V 
Sbjct: 506 TSPHVVTNVSVVPLPKGANVSWEPGFDGG--YLQRFSVWYTPLAKRPDRAHHDWVSLAV- 562

Query: 298 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG----------------P 341
           P G+T + +  L   T Y+F V+ +N+LG G  S IV+   +G                P
Sbjct: 563 PMGATHLLVPGLQAYTQYQFSVLAQNKLGSGPFSEIVLSIPEGLPTTPAVPRLPPTEMPP 622

Query: 342 KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDG-SWKTLNKG 391
              PPR +       G ++ W PP      +  Y+++ R     W+ L++G
Sbjct: 623 PLSPPRGLVAVRTPRGVLLHWDPPELIPERLDGYILEGRQGSQGWEILDQG 673

Functions in dendrite outgrowth and synapse maturation.

Rattus norvegicus (taxid: 10116)

>sp|Q05BQ1|TUTLA_MOUSE Protein turtle homolog A OS=Mus musculus GN=Igsf9 PE=1 SV=2

 Score =  210 bits (534), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/411 (31%), Positives = 203/411 (49%), Gaps = 30/411 (7%)

Query: 4   KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
            +  L++RV I  DG+L +     DD+G Y C  SNG   P +A AYL V +PA+VT  P
Sbjct: 270 HISRLQSRVRILVDGSLWLQATQPDDAGHYTCVPSNGFLHPPSASAYLTVLYPAQVTVMP 329

Query: 64  TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH 123
               LP  ++GV++C ++ANP   +VTWTKD + L+  +     +   GSL+    N+N 
Sbjct: 330 PETPLPTGMRGVIRCPVRANPPLLFVTWTKDGQALQLDKFPGWSLGPEGSLIIALGNENA 389

Query: 124 QGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ 183
            G Y+CTPYN+ GT G S   +VL++ PPAF  +P+  Y ++VG  + + C A+   G  
Sbjct: 390 LGEYSCTPYNSLGTAGPSPVTQVLLKAPPAFIDQPKEEYFQEVGRELLIPCSAR---GDP 446

Query: 184 KPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
            P ++W +  G  L          ++ +  L +   G +EC  SN VA +  +  + V G
Sbjct: 447 PPIVSWAKV-GRGLQGQAQVDSNNSLVLRPLTKEAQGRWECSASNAVARVTTSTNVYVLG 505

Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYR------EQGNKDWLPIPVT 297
           T PH   N++ V       + W PG+ GG    Q + +WY       ++ + DW+ + V 
Sbjct: 506 TSPHVVTNVSVVPLPKGANVSWEPGFDGG--YLQRFSVWYTPLAKRPDRAHHDWVSLAV- 562

Query: 298 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG----------------P 341
           P G+T + +  L     Y+F V+ +N+LG G  S IV+   +G                P
Sbjct: 563 PIGATHLLVPGLQAHAQYQFSVLAQNKLGSGPFSEIVLSIPEGLPTTPAAPGLPPTEIPP 622

Query: 342 KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDG-SWKTLNKG 391
              PPR +       G ++ W PP      +  Y+++ R     W+ L++G
Sbjct: 623 PLSPPRGLVAVRTPRGVLLHWDPPELIPGRLDGYILEGRQGSQGWEILDQG 673

Functions in dendrite outgrowth and synapse maturation.

Mus musculus (taxid: 10090)

>sp|P97603|NEO1_RAT Neogenin (Fragment) OS=Rattus norvegicus GN=Neo1 PE=2 SV=1

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 208/477 (43%), Gaps = 67/477 (14%)

Query: 8   LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEP-----------QAAQAYLNVEFP 56
           L+ R+V    GTLVI+     D GLY C V +G G P           Q ++  L++ F 
Sbjct: 163 LDDRIVKLPSGTLVISNATEGDEGLYRCIVESG-GPPKFSDEAELKVLQESEEMLDLVF- 220

Query: 57  AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLF 116
                 P+          V+ C     P    + W K++ +L+   +  + ++  GSL  
Sbjct: 221 ---LMRPSSMIKVIGQSAVLPCVASGLPA-PVIRWMKNEDVLDTESSGRLALLAGGSLEI 276

Query: 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEA 176
           + V ++  G Y C   N  G +    Q E+ V+ PP F  +P  +Y R   ES+D+  E 
Sbjct: 277 SDVTEDDAGTYFCVADN--GNKTIEAQAELTVQVPPEFLKQPANIYAR---ESMDIVFEC 331

Query: 177 QEAEGTQKPTITWQRRDGVALPKNRVKIVG-GNITIEGLRRVDFGYYECVVSNEVATIVQ 235
            E  G   PT+ W +   V +P +  KIV   N+ + GL + D G+Y+C+  N+V     
Sbjct: 332 -EVTGKPAPTVKWVKNGDVVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNAQA 390

Query: 236 AAQLVV-------EGTQPHAPYNITG--VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ 286
            AQL++        G  P AP ++    V+T F + L W    S        Y ++Y ++
Sbjct: 391 GAQLIILEHAPATTGPLPSAPRDVVASLVSTRF-IKLTWRTPASDPHGDNLTYSVFYTKE 449

Query: 287 GNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK---P 343
           G         + PG  Q+TI  L PAT Y F+V+ +N+ G G  S  + V+T+ P+   P
Sbjct: 450 GVARERVENTSQPGEMQVTIQNLMPATVYIFKVMAQNKHGSGESSAPLRVETQ-PEVQLP 508

Query: 344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402
           GP  N+     +     ++W+ PL     IQ Y + Y   G+ K   +  +    +SY  
Sbjct: 509 GPAPNIRAYATSPTSITVTWETPLSGNGEIQNYKLYYMEKGTDK---EQDVDVSSHSY-- 563

Query: 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                                  TIN L   T Y F+VV  N+ G G+ +  V V+T
Sbjct: 564 -----------------------TINGLKKYTEYSFRVVAYNKHGPGVSTQDVAVRT 597

May be involved as a regulatory protein in the transition of undifferentiated proliferating cells to their differentiated state. May also function as a cell adhesion molecule in a broad spectrum of embryonic and adult tissues.

Rattus norvegicus (taxid: 10116)

>sp|P97798|NEO1_MOUSE Neogenin OS=Mus musculus GN=Neo1 PE=1 SV=1

 Score =  140 bits (353), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 135/493 (27%), Positives = 211/493 (42%), Gaps = 79/493 (16%)

Query: 8   LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQ-AAQAYLNV-EFPAKVT----- 60
           L+ R+V    GTLVI+     D GLY C V +G G P+ + +A L V + P ++      
Sbjct: 205 LDDRIVKLPSGTLVISNATEGDGGLYRCIVESG-GPPKFSDEAELKVLQDPEEIVDLVFL 263

Query: 61  FTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN 120
             P+          V+ C +   P    V W K++ +L+   +  +V++  G L  + V 
Sbjct: 264 MRPSSMMKVTGQSAVLPCVVSGLPA-PVVRWMKNEEVLDTESSGRLVLLAGGCLEISDVT 322

Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAE 180
           ++  G Y C   N  G +    Q E+ V+ PP F  +P  +Y     ES+D+  E  E  
Sbjct: 323 EDDAGTYFCIADN--GNKTVEAQAELTVQVPPGFLKQPANIYAH---ESMDIVFEC-EVT 376

Query: 181 GTQKPTITWQRRDGVALPKNRVKIVG-GNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239
           G   PT+ W +   V +P +  KIV   N+ + GL + D G+Y+C+  N+V      AQL
Sbjct: 377 GKPTPTVKWVKNGDVVIPSDNFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNAQAGAQL 436

Query: 240 VV---------------------------EGTQPHAPYNITG--VATEFSVTLEWLPGYS 270
           ++                            G  P AP ++    V+T F + L W    S
Sbjct: 437 IILEHDVAIPTLPPTSLTSATTDHLAPATTGPLPSAPRDVVASLVSTRF-IKLTWRTPAS 495

Query: 271 GGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGML 330
                   Y ++Y ++G         + PG  Q+TI  L PAT Y F+V+ +N+ G G  
Sbjct: 496 DPHGDNLTYSVFYTKEGVDRERVENTSQPGEMQVTIQNLMPATVYIFKVMAQNKHGSGES 555

Query: 331 SNIVVVKTKGPK---PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWK 386
           S  + V+T+ P+   PGP  N+     +     ++W+ PL     IQ Y + Y   G+ K
Sbjct: 556 SAPLRVETQ-PEVQLPGPAPNIRAYATSPTSITVTWETPLSGNGEIQNYKLYYMEKGTDK 614

Query: 387 TLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL 446
              +  I    +SY                         TIN L   T Y F+VV  N+ 
Sbjct: 615 ---EQDIDVSSHSY-------------------------TINGLKKYTEYSFRVVAYNKH 646

Query: 447 GDGMLSNIVVVKT 459
           G G+ +  V V+T
Sbjct: 647 GPGVSTQDVAVRT 659

May be involved as a regulatory protein in the transition of undifferentiated proliferating cells to their differentiated state. May also function as a cell adhesion molecule in a broad spectrum of embryonic and adult tissues.

Mus musculus (taxid: 10090)

>sp|Q92859|NEO1_HUMAN Neogenin OS=Homo sapiens GN=NEO1 PE=1 SV=2

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 135/478 (28%), Positives = 210/478 (43%), Gaps = 69/478 (14%)

Query: 8   LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTV-- 65
           L+ RV+    G LVI+     D GLY C V +G G P+ +      E   KV   P V  
Sbjct: 194 LDDRVIKLPSGMLVISNATEGDGGLYRCVVESG-GPPKYSD-----EVELKVLPDPEVIS 247

Query: 66  ------QYLPF-RLQG---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL 115
                 Q  P  R+ G   V+ C     PT   + W K++  L+   ++ +V++  GSL 
Sbjct: 248 DLVFLKQPSPLVRVIGQDVVLPCVASGLPT-PTIKWMKNEEALDTESSERLVLLAGGSLE 306

Query: 116 FTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCE 175
            + V ++  G Y C   N  G +    Q E+ V+  P F  +P  +Y     ES+D+  E
Sbjct: 307 ISDVTEDDAGTYFCIADN--GNETIEAQAELTVQAQPEFLKQPTNIYAH---ESMDIVFE 361

Query: 176 AQEAEGTQKPTITWQRRDGVALPKNRVKIVG-GNITIEGLRRVDFGYYECVVSNEVATIV 234
             E  G   PT+ W +   + +P +  KIV   N+ + GL + D G+Y+C+  N+V    
Sbjct: 362 C-EVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNAQ 420

Query: 235 QAAQLVV-------EGTQPHAPYNITG--VATEFSVTLEWLPGYSGGPDLKQNYVIWYRE 285
             AQL++        G  P AP ++    V+T F + L W    S        Y ++Y +
Sbjct: 421 AGAQLIILEHAPATTGPLPSAPRDVVASLVSTRF-IKLTWRTPASDPHGDNLTYSVFYTK 479

Query: 286 QGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK--- 342
           +G         + PG  Q+TI  L PAT Y F+V+ +N+ G G  S  + V+T+ P+   
Sbjct: 480 EGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQ-PEVQL 538

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           PGP  N+     +     ++W+ P+     IQ Y + Y   G+ K   +  +    +SY 
Sbjct: 539 PGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDK---EQDVDVSSHSY- 594

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                                   TIN L   T Y F+VV  N+ G G+ +  V V+T
Sbjct: 595 ------------------------TINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRT 628

May be involved as a regulatory protein in the transition of undifferentiated proliferating cells to their differentiated state. May also function as a cell adhesion molecule in a broad spectrum of embryonic and adult tissues.

Homo sapiens (taxid: 9606)

>sp|Q63155|DCC_RAT Netrin receptor DCC OS=Rattus norvegicus GN=Dcc PE=1 SV=2

 Score =  135 bits (340), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 181/395 (45%), Gaps = 43/395 (10%)

Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
           ++RVV+   G L I+ +   DSG+Y C   N       A      E   ++   P +   
Sbjct: 186 DSRVVVLPSGALQISRLQPGDSGVYRCSARN------PASTRTGNEAEVRILSDPGLHRQ 239

Query: 69  PFRLQ------------GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLF 116
            + LQ             V++C +   P   + TW + + +++  ++K   ++   +LL 
Sbjct: 240 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSF-TWLRGEEVIQ-LRSKKYSLLGGSNLLI 297

Query: 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEA 176
           + V  +  G YTC     +    +S ++ VLV  PP F   P  +Y     ES+D+  E 
Sbjct: 298 SNVTDDDSGTYTCVVTYKNENISASAELTVLV--PPWFLNHPSNLYAY---ESMDIEFEC 352

Query: 177 QEAEGTQKPTITWQRRDGVALPKNRVKIVGG-NITIEGLRRVDFGYYECVVSNEVATIVQ 235
               G   PT+ W +   V +P +  +IVGG N+ I G+ + D G+Y+CV  NE      
Sbjct: 353 A-VSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQS 411

Query: 236 AAQLVV-------EGTQPHAPYNITGV--ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ 286
           +AQL+V           P AP ++  V  ++ F V L W P      ++ Q + +++  +
Sbjct: 412 SAQLIVPKPAIPSSSILPSAPRDVVPVLVSSRF-VRLSWRPPAEAKGNI-QTFTVFFSRE 469

Query: 287 GNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK---P 343
           G+     +  T PGS Q+T+  L P   Y F+VV  NE G G  S  + V T+ P+   P
Sbjct: 470 GDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQ-PELQVP 528

Query: 344 GPPRNV-SVTEVNNGFVISWQPPLERASLIQYYLI 377
           GP  N+ +V+      +I+W+PP      +Q Y +
Sbjct: 529 GPVENLHAVSASPTSILITWEPPAYANGPVQGYRL 563

Receptor for netrin required for axon guidance. Mediates axon attraction of neuronal growth cones in the developing nervous system upon ligand binding. Its association with UNC5 proteins may trigger signaling for axon repulsion. It also acts as a dependence receptor required for apoptosis induction when not associated with netrin ligand. Implicated as a tumor suppressor gene.

Rattus norvegicus (taxid: 10116)

>sp|P70211|DCC_MOUSE Netrin receptor DCC OS=Mus musculus GN=Dcc PE=1 SV=2

 Score =  134 bits (337), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 181/395 (45%), Gaps = 43/395 (10%)

Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
           ++RVV+   G L I+ +   DSG+Y C   N       A      E   ++   P +   
Sbjct: 186 DSRVVVLPSGALQISRLQPGDSGVYRCSARN------PASIRTGNEAEVRILSDPGLHRQ 239

Query: 69  PFRLQ------------GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLF 116
            + LQ             V++C +   P   + TW + + +++  ++K   ++   +LL 
Sbjct: 240 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSF-TWLRGEEVIQ-LRSKKYSLLGGSNLLI 297

Query: 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEA 176
           + V  +  G YTC     +    +S ++ VLV  PP F   P  +Y     ES+D+  E 
Sbjct: 298 SNVTDDDSGTYTCVVTYKNENISASAELTVLV--PPWFLNHPSNLYAY---ESMDIEFEC 352

Query: 177 QEAEGTQKPTITWQRRDGVALPKNRVKIVGG-NITIEGLRRVDFGYYECVVSNEVATIVQ 235
               G   PT+ W +   V +P +  +IVGG N+ I G+ + D G+Y+CV  NE      
Sbjct: 353 A-VSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQS 411

Query: 236 AAQLVV-------EGTQPHAPYNITGV--ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ 286
           +AQL+V           P AP ++  V  ++ F V L W P      ++ Q + +++  +
Sbjct: 412 SAQLIVPKPAIPSSSILPSAPRDVLPVLVSSRF-VRLSWRPPAEAKGNI-QTFTVFFSRE 469

Query: 287 GNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK---P 343
           G+     +  T PGS Q+T+  L P   Y F+VV  NE G G  S  + V T+ P+   P
Sbjct: 470 GDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQ-PELQVP 528

Query: 344 GPPRNV-SVTEVNNGFVISWQPPLERASLIQYYLI 377
           GP  N+ +V+      +I+W+PP      +Q Y +
Sbjct: 529 GPVENLHAVSTSPTSILITWEPPAYANGPVQGYRL 563

Receptor for netrin required for axon guidance. Mediates axon attraction of neuronal growth cones in the developing nervous system upon ligand binding. Its association with UNC5 proteins may trigger signaling for axon repulsion. It also acts as a dependence receptor required for apoptosis induction when not associated with netrin ligand. Implicated as a tumor suppressor gene.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	460
270006125	1219	hypothetical protein TcasGA2_TC008291 [T	0.745	0.281	0.783	0.0
157113626	1300	turtle protein, isoform [Aedes aegypti]	0.865	0.306	0.726	0.0
158297293	1478	AGAP007928-PA [Anopheles gambiae str. PE	0.865	0.269	0.724	0.0
242013609	1313	turtle protein, isoform, putative [Pedic	0.865	0.303	0.718	0.0
328790053	1174	PREDICTED: protein turtle isoform 2 [Api	0.867	0.339	0.715	0.0
322800587	539	hypothetical protein SINV_13454 [Solenop	0.760	0.649	0.744	0.0
380011908	1197	PREDICTED: LOW QUALITY PROTEIN: protein	0.865	0.332	0.714	0.0
307167054	1161	Protein turtle [Camponotus floridanus]	0.867	0.343	0.706	0.0
307201185	744	Protein turtle [Harpegnathos saltator]	0.865	0.534	0.701	0.0
328699158	1256	PREDICTED: protein turtle-like isoform 1	0.863	0.316	0.718	1e-179

>gi|270006125|gb|EFA02573.1| hypothetical protein TcasGA2_TC008291 [Tribolium castaneum]

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/398 (78%), Positives = 351/398 (88%)

Query: 4   KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
           ++ SLETRV I++DG+LVINPV SDDSG Y+CEVSNGIGEPQ+A AYLNVE+PAKVTFTP
Sbjct: 301 ELASLETRVNIRRDGSLVINPVNSDDSGQYLCEVSNGIGEPQSASAYLNVEYPAKVTFTP 360

Query: 64  TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH 123
           TVQYLPFRL GVVQC+IKANP  QYVTWTKDKRLLEPYQTKDIV+M NGSLLFTRVN+NH
Sbjct: 361 TVQYLPFRLAGVVQCYIKANPPLQYVTWTKDKRLLEPYQTKDIVIMNNGSLLFTRVNENH 420

Query: 124 QGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ 183
           QGRYTCTPYNA GTQGSSGQMEVLVRKPP FTI+PE +YQRKVG++V+MHCEAQEAEGTQ
Sbjct: 421 QGRYTCTPYNAQGTQGSSGQMEVLVRKPPVFTIEPEPLYQRKVGDTVEMHCEAQEAEGTQ 480

Query: 184 KPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
           KPTI WQRRDG  LP  R KIVGGNITIEGLR  DFG+Y+CV SNEVATIV + +LVVEG
Sbjct: 481 KPTIEWQRRDGSPLPPKRYKIVGGNITIEGLRAKDFGFYQCVASNEVATIVTSTRLVVEG 540

Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
           T+PHAPYN+TG A EF+VTL WLPGYSGGPD KQNY IWYRE G  +W  IPVTP GSTQ
Sbjct: 541 TEPHAPYNLTGNAMEFAVTLSWLPGYSGGPDYKQNYTIWYREAGTSEWSTIPVTPSGSTQ 600

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQ 363
           I INRL+P TTYEFQVVGKN LGDG++S ++ VKT GPKPG P+N++VTE++NGF+I+WQ
Sbjct: 601 IKINRLSPGTTYEFQVVGKNALGDGLMSKVITVKTLGPKPGIPKNLTVTEISNGFLITWQ 660

Query: 364 PPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           PP ERA+LIQ+Y IKYRTDG WKTLNK QIRPE+  YL
Sbjct: 661 PPTERANLIQHYSIKYRTDGGWKTLNKAQIRPEDTQYL 698

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113626|ref|XP_001652029.1| turtle protein, isoform [Aedes aegypti] gi|108877675|gb|EAT41900.1| AAEL006522-PA, partial [Aedes aegypti]

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/428 (72%), Positives = 351/428 (82%), Gaps = 30/428 (7%)

Query: 4   KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
           +V +LETRV I+KDG+L+INPV +DDSG+Y CEVSNGIGEPQ+A A+LN+E+PAKVTFTP
Sbjct: 257 EVAALETRVTIRKDGSLIINPVSADDSGMYTCEVSNGIGEPQSASAFLNIEYPAKVTFTP 316

Query: 64  TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH 123
           T+QYLPFRL GVVQC+IKANP  QYVTWTKDKRLLEPYQTKDIV+M NGSLLFTRVNQNH
Sbjct: 317 TIQYLPFRLAGVVQCYIKANPPLQYVTWTKDKRLLEPYQTKDIVIMNNGSLLFTRVNQNH 376

Query: 124 QGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ 183
           QGRYTCTPYNA GTQGSSG MEVLVRKPPAFTI+P+ +YQRKVGESV+MHC+AQEAEGT 
Sbjct: 377 QGRYTCTPYNAQGTQGSSGHMEVLVRKPPAFTIEPDPLYQRKVGESVEMHCDAQEAEGTT 436

Query: 184 KPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
           KPTITWQRRDG  L KNRV+I+ GNITIE LRR DFGYY+CV SNEVATIV A QLV+EG
Sbjct: 437 KPTITWQRRDGQPLQKNRVRIMNGNITIENLRRSDFGYYQCVASNEVATIVSATQLVIEG 496

Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
           TQPHAPYN++G ATEFSVTL W+PGYSGGPD KQ+Y IWYRE G  DW  IPVTP GSTQ
Sbjct: 497 TQPHAPYNLSGTATEFSVTLSWMPGYSGGPDYKQDYTIWYREAGVSDWSTIPVTPSGSTQ 556

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT------------------------- 338
           +TINRL+P TTYEFQV+GKN LGDGM+S ++ ++T                         
Sbjct: 557 VTINRLSPGTTYEFQVIGKNALGDGMMSKVITIRTLGEYYVQKPKKTSTTTAAPNEKEFK 616

Query: 339 -----KGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQI 393
                 GPKPG PRNVSV E+ NGF+ISWQ PLER  L+Q+Y IKYRTD  WKTLN+GQI
Sbjct: 617 HASDDLGPKPGQPRNVSVLEIPNGFLISWQVPLERPHLVQFYTIKYRTDAQWKTLNRGQI 676

Query: 394 RPEENSYL 401
           RPEE SYL
Sbjct: 677 RPEETSYL 684

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297293|ref|XP_317553.4| AGAP007928-PA [Anopheles gambiae str. PEST] gi|157015125|gb|EAA12846.4| AGAP007928-PA [Anopheles gambiae str. PEST]

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/425 (72%), Positives = 348/425 (81%), Gaps = 27/425 (6%)

Query: 4   KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
           +V +LETRV I+KDG+L+INPV +DDSG Y CEVSNGIGEPQ+A AYLN+E+PAKVTFTP
Sbjct: 399 EVAALETRVTIRKDGSLIINPVSADDSGQYTCEVSNGIGEPQSASAYLNIEYPAKVTFTP 458

Query: 64  TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH 123
           T+QYLPFRL GVVQC+IKANP  QYVTWTKDKRLLEPYQTKDIV+M NGSLLFTRVNQNH
Sbjct: 459 TIQYLPFRLAGVVQCYIKANPPLQYVTWTKDKRLLEPYQTKDIVIMNNGSLLFTRVNQNH 518

Query: 124 QGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ 183
           QGRYTCTPYNA GTQGSSG MEVLVRKPPAFT++P+ +YQRKVGESV+MHC+AQEAEGT 
Sbjct: 519 QGRYTCTPYNAQGTQGSSGHMEVLVRKPPAFTVEPDPLYQRKVGESVEMHCDAQEAEGTS 578

Query: 184 KPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
           KP I WQRRDG  L KNRV+I  GNITIE LRR DFGYY+CV SNEVATIV A QLV+EG
Sbjct: 579 KPNIQWQRRDGQPLQKNRVRINSGNITIENLRRSDFGYYQCVASNEVATIVSATQLVIEG 638

Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
           TQPHAPYN++G ATEFSVTL W+PGYSGGPD KQ+Y IWYRE G  +W  IPVTP GSTQ
Sbjct: 639 TQPHAPYNLSGSATEFSVTLSWMPGYSGGPDYKQDYTIWYREAGVSEWSTIPVTPSGSTQ 698

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT------------------------- 338
           +TINRL+P TTYEFQV+GKN LGDGM+S ++ ++T                         
Sbjct: 699 VTINRLSPGTTYEFQVIGKNALGDGMMSKVITIRTLDAQKAKKPSTTTAAPNDKEFKHAP 758

Query: 339 --KGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPE 396
              GPKPG PRNV+V E+ NGF+ISWQ PLERA L+Q+Y IKYRTD  WKTLN+GQIRPE
Sbjct: 759 EDLGPKPGQPRNVTVVEIPNGFLISWQVPLERAHLVQFYTIKYRTDAQWKTLNRGQIRPE 818

Query: 397 ENSYL 401
           E SYL
Sbjct: 819 ETSYL 823

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013609|ref|XP_002427495.1| turtle protein, isoform, putative [Pediculus humanus corporis] gi|212511890|gb|EEB14757.1| turtle protein, isoform, putative [Pediculus humanus corporis]

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/423 (71%), Positives = 350/423 (82%), Gaps = 25/423 (5%)

Query: 4   KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
           +V SLETRV  ++DG+L++NPV +DDSGLY CEV+NGIGEPQ+A AYLNVEFPAKVTFTP
Sbjct: 223 EVASLETRVTTRRDGSLIVNPVNADDSGLYTCEVTNGIGEPQSASAYLNVEFPAKVTFTP 282

Query: 64  TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH 123
           TVQYLPFRL GVVQC IKANP  QYVTWTKDKRLLEPYQTKDIV+M NGSLLFTRVNQNH
Sbjct: 283 TVQYLPFRLAGVVQCFIKANPPHQYVTWTKDKRLLEPYQTKDIVIMNNGSLLFTRVNQNH 342

Query: 124 QGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ 183
           QGRYTCTPYNA GTQGSSG MEVLVRKPP F ++PE++YQ+KVGE+V+MHCE QEAEGTQ
Sbjct: 343 QGRYTCTPYNAQGTQGSSGPMEVLVRKPPVFVVEPESLYQKKVGETVEMHCEVQEAEGTQ 402

Query: 184 KPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
           KPT+ WQRRDG  L KNR++I GGNITIE LRR DFG+Y+CV SNEVATIV A QLVVEG
Sbjct: 403 KPTVQWQRRDGAPLQKNRIRISGGNITIESLRRSDFGFYQCVASNEVATIVAATQLVVEG 462

Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
           TQPHAPYN++G A+EF+VTL WLPGYSGGPD KQ+Y IWYRE G  +W  IPVTP GSTQ
Sbjct: 463 TQPHAPYNVSGNASEFAVTLSWLPGYSGGPDYKQDYTIWYREVGASEWSTIPVTPSGSTQ 522

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK------------------------ 339
           +TINRLTP+T+YEFQV+GKN LGDGMLS ++ V+T+                        
Sbjct: 523 VTINRLTPSTSYEFQVIGKNALGDGMLSKVITVRTQDVGITRTVSNPVVSEKDFIPAPED 582

Query: 340 -GPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN 398
            GP+PGPP+N++VTE+NNGF+ISW+ P ERA+L+ +Y IKYRTD  WKTLNKG IRPEE 
Sbjct: 583 SGPRPGPPKNLTVTEINNGFLISWEQPNERANLVLHYTIKYRTDAQWKTLNKGTIRPEET 642

Query: 399 SYL 401
            YL
Sbjct: 643 QYL 645

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790053|ref|XP_392303.4| PREDICTED: protein turtle isoform 2 [Apis mellifera]

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/422 (71%), Positives = 347/422 (82%), Gaps = 23/422 (5%)

Query: 3   TKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFT 62
           T++  L+TRV IK DG+LVINPV +DDSG Y+CEV+NGIG+PQ+A AYLNVE+PAKVTFT
Sbjct: 238 TELSELDTRVTIKSDGSLVINPVSADDSGQYLCEVTNGIGDPQSASAYLNVEYPAKVTFT 297

Query: 63  PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN 122
           PTVQYLPFRL GVV C+IKANPT QYVTWTKDKRLLEPYQTKDIVVM NGSLLFTRVN+N
Sbjct: 298 PTVQYLPFRLAGVVHCYIKANPTLQYVTWTKDKRLLEPYQTKDIVVMNNGSLLFTRVNEN 357

Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT 182
           HQGRYTCTPYNAHGTQGSSG MEVLVR PP FT++PE +YQ+KVGE+V+MHC+AQEAEGT
Sbjct: 358 HQGRYTCTPYNAHGTQGSSGPMEVLVRNPPVFTLEPEPIYQKKVGETVEMHCDAQEAEGT 417

Query: 183 QKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           QKPTI W RRDG ++ +NR K VGGN+TIE LRR DFG+Y+CV SNEVATI  + QL+VE
Sbjct: 418 QKPTIQWHRRDGASIQRNRAKTVGGNLTIESLRRSDFGFYQCVASNEVATISASTQLIVE 477

Query: 243 GTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           GTQPHAPYN+TG ATEFSVTL WLPGYSGGPD KQ+Y IWYRE G  +W  IPVTP GST
Sbjct: 478 GTQPHAPYNVTGTATEFSVTLTWLPGYSGGPDYKQDYTIWYRESGTSEWKMIPVTPSGST 537

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT-----------------------K 339
            +TIN LTP T YEFQV+GKN LGDGMLS ++ ++T                        
Sbjct: 538 TVTINSLTPGTLYEFQVIGKNALGDGMLSKLITIRTLDVALTHSATPSSNAGQAAATDES 597

Query: 340 GPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
           GPKPGPP+N++VTEV+NGF+I+W+ P+ER  LIQYY IKY+TDG WKTLNKGQIR EE S
Sbjct: 598 GPKPGPPKNLTVTEVSNGFLITWEAPVERNHLIQYYTIKYKTDGPWKTLNKGQIRAEETS 657

Query: 400 YL 401
           YL
Sbjct: 658 YL 659

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800587|gb|EFZ21573.1| hypothetical protein SINV_13454 [Solenopsis invicta]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/399 (74%), Positives = 347/399 (86%)

Query: 3   TKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFT 62
           T+V +L+TRV IK DG+LVINPV +DDSG Y+CEV+NGIG+PQ A AYLNVE+PAKVTFT
Sbjct: 44  TEVSALDTRVSIKMDGSLVINPVSADDSGQYLCEVTNGIGDPQTASAYLNVEYPAKVTFT 103

Query: 63  PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN 122
           PTVQYLPFRL GVVQC+IKANP  QYVTWTKDKRLLEPYQTKDIV+M NGSLLFTRVN+N
Sbjct: 104 PTVQYLPFRLAGVVQCYIKANPPLQYVTWTKDKRLLEPYQTKDIVIMNNGSLLFTRVNEN 163

Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT 182
           HQGRYTCTPYNA GTQGSSG MEVLVR PP FT++PE +Y +KVGE+V+MHC+AQEA+GT
Sbjct: 164 HQGRYTCTPYNAQGTQGSSGPMEVLVRNPPVFTLEPEPVYTKKVGETVEMHCDAQEADGT 223

Query: 183 QKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           QKPTI W RRDG  + ++R K VGGN+TIE LRR DFG+Y+CV SNEVATI  + QL+VE
Sbjct: 224 QKPTIQWHRRDGGPIQRSRAKTVGGNLTIESLRRADFGFYQCVASNEVATISSSTQLIVE 283

Query: 243 GTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           GTQPHAPYN++G AT+F+VTL WLPGYSGGPD KQ+Y IWYRE G  +W  IPVTP GST
Sbjct: 284 GTQPHAPYNVSGTATQFAVTLIWLPGYSGGPDYKQDYTIWYRESGTSEWKTIPVTPSGST 343

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISW 362
            +TIN LTP+T YEFQV+GKN LG+GMLS ++ V+T GPKPG PRN++VTE++NGF+I+W
Sbjct: 344 TVTINNLTPSTLYEFQVIGKNALGEGMLSKVITVRTLGPKPGTPRNLTVTEISNGFLITW 403

Query: 363 QPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           QPP+E+A LIQYY IKY+TDG WKTLNKGQIRPEE SYL
Sbjct: 404 QPPVEKAHLIQYYTIKYKTDGPWKTLNKGQIRPEETSYL 442

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011908|ref|XP_003690035.1| PREDICTED: LOW QUALITY PROTEIN: protein turtle-like [Apis florea]

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/421 (71%), Positives = 346/421 (82%), Gaps = 23/421 (5%)

Query: 3   TKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFT 62
           T++  L+TRV IK DG+LVINPV +DDSG Y+CEV+NGIG+PQ+A AYLNVE+PAKVTFT
Sbjct: 261 TELSELDTRVTIKSDGSLVINPVSADDSGQYLCEVTNGIGDPQSASAYLNVEYPAKVTFT 320

Query: 63  PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN 122
           PTVQYLPFRL GVV C+IKANPT QYVTWTKDKRLLEPYQTKDIVVM NGSLLFTRVN+N
Sbjct: 321 PTVQYLPFRLAGVVHCYIKANPTLQYVTWTKDKRLLEPYQTKDIVVMNNGSLLFTRVNEN 380

Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT 182
           HQGRYTCTPYNAHGTQGSSG MEVLVR PP FT++PE +YQ+KVGE+V+MHC+AQEAEGT
Sbjct: 381 HQGRYTCTPYNAHGTQGSSGPMEVLVRNPPVFTLEPEPIYQKKVGETVEMHCDAQEAEGT 440

Query: 183 QKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           QKPTI W RRDG ++ +NR K VGGN+TIE LRR DFG+Y+CV SNEVATI  + QL+VE
Sbjct: 441 QKPTIQWHRRDGASIQRNRAKTVGGNLTIESLRRSDFGFYQCVASNEVATISASTQLIVE 500

Query: 243 GTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           GTQPHAPYN+TG ATEFSVTL WLPGYSGGPD KQ+Y IWYRE G  +W  IPVTP GST
Sbjct: 501 GTQPHAPYNVTGTATEFSVTLTWLPGYSGGPDYKQDYTIWYRESGTSEWKMIPVTPSGST 560

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT-----------------------K 339
            +TIN LTP T YEFQV+GKN LGDGMLS ++ ++T                        
Sbjct: 561 TVTINSLTPGTLYEFQVIGKNALGDGMLSKLITIRTLDVALTHSATPSSSAGQVAATDES 620

Query: 340 GPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
           GPKPGPP+N++VTEV+NGF+I+W+ P+ER  LIQYY IKY+TDG WKTLNKGQIR EE S
Sbjct: 621 GPKPGPPKNLTVTEVSNGFLITWEAPVERNHLIQYYTIKYKTDGPWKTLNKGQIRAEETS 680

Query: 400 Y 400
           Y
Sbjct: 681 Y 681

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167054|gb|EFN60857.1| Protein turtle [Camponotus floridanus]

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 296/419 (70%), Positives = 347/419 (82%), Gaps = 20/419 (4%)

Query: 3   TKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFT 62
           T+V +L+TRV IK DG+LVINPV +DDSG Y+CEV+NGIG+PQ A AYLNVE+PAKVTFT
Sbjct: 238 TEVSALDTRVSIKMDGSLVINPVSADDSGQYLCEVTNGIGDPQTASAYLNVEYPAKVTFT 297

Query: 63  PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN 122
           PTVQYLPFR+ GVVQC+IKANP  QYVTWTKDKRLLEPYQTKDIV+M NGSLLFTRVN+N
Sbjct: 298 PTVQYLPFRMAGVVQCYIKANPPLQYVTWTKDKRLLEPYQTKDIVIMNNGSLLFTRVNEN 357

Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT 182
           HQGRYTCTPYNAHGTQGSSG MEVLVR PP FT++PE++Y +KVGE+V+MHC+AQEAEGT
Sbjct: 358 HQGRYTCTPYNAHGTQGSSGPMEVLVRNPPVFTLEPESVYTKKVGETVEMHCDAQEAEGT 417

Query: 183 QKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           QKPTI W RRDG  + + R K VGGN+TIE LRR DFG+Y+C+ SNEVATI  + QL+VE
Sbjct: 418 QKPTIQWHRRDGGPIQRARTKTVGGNLTIESLRRADFGFYQCIASNEVATISSSTQLIVE 477

Query: 243 GTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           GTQPHAPYN++G AT+FSVTL WLPGYSGGPD KQ+Y IWYRE G  +W  IPVTP GST
Sbjct: 478 GTQPHAPYNVSGTATQFSVTLTWLPGYSGGPDYKQDYTIWYRESGTSEWKTIPVTPSGST 537

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT--------------------KGPK 342
            +TIN L P+T YEFQV+GKN LG+GMLS ++ ++T                     GPK
Sbjct: 538 TVTINTLMPSTLYEFQVIGKNALGEGMLSKVITIRTLGVALTHSATSAPDQPVSPESGPK 597

Query: 343 PGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           PG PRN++VTE++NGF+I+WQPP+ER+ LIQYY IKY+TDG WKTLNKGQIRPEE SYL
Sbjct: 598 PGTPRNLTVTEISNGFLITWQPPMERSHLIQYYTIKYKTDGPWKTLNKGQIRPEETSYL 656

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201185|gb|EFN81091.1| Protein turtle [Harpegnathos saltator]

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/426 (70%), Positives = 351/426 (82%), Gaps = 28/426 (6%)

Query: 3   TKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFT 62
           T+V +L+TRV IK DG+LVINPV +DDSG YMCEV+NGIG+PQ+A AYLNVE+PAKVTFT
Sbjct: 126 TEVSALDTRVSIKMDGSLVINPVSADDSGQYMCEVTNGIGDPQSASAYLNVEYPAKVTFT 185

Query: 63  PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN 122
           P++QYLPFRL GVVQC+IKANP  QYVTWTKDKRLLEPYQTKDIV+M NGSLLFTRVN+N
Sbjct: 186 PSIQYLPFRLAGVVQCYIKANPPLQYVTWTKDKRLLEPYQTKDIVIMNNGSLLFTRVNEN 245

Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT 182
           HQGRYTCTPYNA GTQGSSG MEVLVR PP FT++P++MY RKVGE+V+MHC+AQEAEGT
Sbjct: 246 HQGRYTCTPYNAQGTQGSSGPMEVLVRNPPVFTLEPDSMYTRKVGETVEMHCDAQEAEGT 305

Query: 183 QKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           QKPTI W RR+G  + +NR KI+GGN+TIEGLRR DFG Y CV SNEVATI  + QL+VE
Sbjct: 306 QKPTIQWHRREG-PIQRNRAKIIGGNLTIEGLRRTDFGLYHCVASNEVATISASTQLIVE 364

Query: 243 GTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           GTQPHAPYN+TG AT+FSVTL WLPGYSGGPD KQ+Y IW+RE G  +W  IPVTP GST
Sbjct: 365 GTQPHAPYNVTGTATQFSVTLNWLPGYSGGPDYKQDYTIWHRESGTSEWKTIPVTPSGST 424

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT------------------------ 338
            +TINRL+P+T Y+FQV+GKN LG+G+LS ++ ++T                        
Sbjct: 425 TVTINRLSPSTLYDFQVIGKNALGEGLLSKVITIRTLDIVDYSTLILPTDSTGNPVFPTI 484

Query: 339 ---KGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRP 395
              KGPKPG PRN++VTE++NGF+I+WQPPLER+ LIQYY IKY+TDG WKTLNKGQIRP
Sbjct: 485 IRPKGPKPGTPRNLTVTEISNGFLITWQPPLERSHLIQYYTIKYKTDGPWKTLNKGQIRP 544

Query: 396 EENSYL 401
           EE SYL
Sbjct: 545 EETSYL 550

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328699158|ref|XP_003240846.1| PREDICTED: protein turtle-like isoform 1 [Acyrthosiphon pisum]

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 304/423 (71%), Positives = 338/423 (79%), Gaps = 26/423 (6%)

Query: 5   VGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPT 64
           + SLETRV IKKDG++VINPV +DDSG Y+CEVSNGIG+PQ+A AYLNVE+PAKVTFTPT
Sbjct: 289 IASLETRVTIKKDGSMVINPVSADDSGQYLCEVSNGIGDPQSASAYLNVEYPAKVTFTPT 348

Query: 65  VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQ 124
           VQYLPFRL GVVQC+IKANP  QYVTWTKDKRLLEPYQ KDIV+M NGSLLFTRVNQNHQ
Sbjct: 349 VQYLPFRLAGVVQCYIKANPPLQYVTWTKDKRLLEPYQQKDIVIMNNGSLLFTRVNQNHQ 408

Query: 125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184
           GRYTCTPYNA GTQGSSGQMEVLVRKPP FT++PE MYQRK+ ESV+MHC+AQEAEGTQK
Sbjct: 409 GRYTCTPYNAQGTQGSSGQMEVLVRKPPTFTVEPENMYQRKISESVEMHCDAQEAEGTQK 468

Query: 185 PTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244
           P I WQRRDG  LPK R  I GGNITIE LR+ DFGYY CV SNEVATIV    LVVEGT
Sbjct: 469 PKIQWQRRDGAPLPKGRHSIHGGNITIENLRKTDFGYYHCVASNEVATIVTTTHLVVEGT 528

Query: 245 QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           QPHAPYN++  A+E +VTL+WLPGYSGGPD KQ+Y IWY+E G  DW  IPVTP GSTQ+
Sbjct: 529 QPHAPYNVSANASETTVTLQWLPGYSGGPDYKQDYTIWYKEPGMADWSTIPVTPSGSTQV 588

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP--------------------- 343
           TINRLTP TTYEFQVVGKN LGDGMLS ++ +KT    P                     
Sbjct: 589 TINRLTPDTTYEFQVVGKNALGDGMLSKVISIKTLAAVPLTVAKKTSPAPPVTELPPPPS 648

Query: 344 -----GPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN 398
                GPPRNVS+ EV NGFVISWQ PLERA L++YY+I Y+TDG W+TLNK QIR E+ 
Sbjct: 649 DGPKPGPPRNVSIAEVKNGFVISWQAPLERAHLVRYYVINYKTDGIWRTLNKAQIRAEDT 708

Query: 399 SYL 401
            YL
Sbjct: 709 RYL 711

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	460
FB|FBgn0010473	1531	tutl "turtle" [Drosophila mela	0.954	0.286	0.580	1.2e-136
FB|FBgn0028482	719	CG16857 [Drosophila melanogast	0.706	0.452	0.411	7.6e-74
UNIPROTKB|Q9UPX0	1349	IGSF9B "Protein turtle homolog	0.819	0.279	0.331	6e-56
ZFIN|ZDB-GENE-060810-28	2021	igsf9b "immunoglobulin superfa	0.806	0.183	0.341	1.3e-55
UNIPROTKB|H9L3A2	632	IGSF9 "Uncharacterized protein	0.819	0.596	0.318	2.3e-55
UNIPROTKB|Q9P2J2	1179	IGSF9 "Protein turtle homolog	0.906	0.353	0.306	5e-49
UNIPROTKB|F1MNG8	1179	IGSF9 "Uncharacterized protein	0.904	0.352	0.305	1.4e-48
RGD|1304566	1179	Igsf9 "immunoglobulin superfam	0.943	0.368	0.304	3.6e-48
MGI|MGI:2135283	1179	Igsf9 "immunoglobulin superfam	0.697	0.272	0.339	9.7e-48
UNIPROTKB|F1PDU1	1432	NEO1 "Uncharacterized protein"	0.8	0.256	0.293	1.2e-38

FB|FBgn0010473 tutl "turtle" [Drosophila melanogaster (taxid:7227)]

 Score = 1338 (476.1 bits), Expect = 1.2e-136, P = 1.2e-136
 Identities = 262/451 (58%), Positives = 324/451 (71%)

Query:     4 KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
             +V +LETRV I+KDG+L+INP+  DDSG Y+CEV+NGIG+PQ+A AYL+VE+PAKVTFTP
Sbjct:   388 EVAALETRVTIRKDGSLIINPIKPDDSGQYLCEVTNGIGDPQSASAYLSVEYPAKVTFTP 447

Query:    64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH 123
             TVQYLPFRL GVVQC+IK++P  QYVTWTKDKRLLEPYQ KDIVVM NGSLLFTRVN+ H
Sbjct:   448 TVQYLPFRLAGVVQCYIKSSPQLQYVTWTKDKRLLEPYQMKDIVVMANGSLLFTRVNEEH 507

Query:   124 QGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ 183
             QG+Y CTPYNA GT G+SG M+VLVRKPPAFT++PE +YQRKVG+SV+MHC+A EAEGT+
Sbjct:   508 QGQYACTPYNAQGTAGASGVMDVLVRKPPAFTVEPETLYQRKVGDSVEMHCDALEAEGTE 567

Query:   184 KPTITWQRRDGVALP---KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV 240
             +PTI WQR++G  L    +NR+KI GGNITIE LRR DFGYY+CVVSNEVAT++   QLV
Sbjct:   568 RPTIKWQRQEGEQLTESQRNRIKISGGNITIENLRREDFGYYQCVVSNEVATLMAVTQLV 627

Query:   241 VEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPG 300
             +EGTQPHAPYNITG ATE S+TL+WLPGYSGG + KQ+Y IW+RE G  DW  I VTP G
Sbjct:   628 IEGTQPHAPYNITGKATESSITLQWLPGYSGGSEYKQDYTIWFREAGVNDWQTISVTPSG 687

Query:   301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXXXXRNV-SVTEVNNGFV 359
             STQ+TIN L   TTYEFQVVG+N LGDGM+S +             RNV + T+  + F 
Sbjct:   688 STQVTINGLASGTTYEFQVVGRNVLGDGMMSKVMTVRTLEDAPAAPRNVKAATQPPDSFF 747

Query:   360 -ISWQPPLERASLIQYYLIKYRTDG---SWKT-LNKGQIRPEENSYLGEYREQGNKDWLP 414
              +       +    +   +   ++G   +W++ L +  I      Y  +YR       L 
Sbjct:   748 QLMPDEAGPKPGPPRNVSVTEVSNGFLITWQSPLERAHI---VKFYTIKYRTDAQWKTLN 804

Query:   415 IPVTPPGSTQITINRLTPATTYEFQVVGKNE 445
                  P  TQ  +  L    TY F+V+  +E
Sbjct:   805 RGQIRPEETQYLVKNLVGGRTYYFRVLANSE 835

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0007629 "flight behavior" evidence=IMP

GO:0030537 "larval behavior" evidence=IMP

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008039 "synaptic target recognition" evidence=IMP

GO:0048814 "regulation of dendrite morphogenesis" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0007414 "axonal defasciculation" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0028482 CG16857 [Drosophila melanogaster (taxid:7227)]

 Score = 721 (258.9 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
 Identities = 135/328 (41%), Positives = 196/328 (59%)

Query:     4 KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
             +V  L  R  +  DG+L I+P    D G Y C+V N  GE Q A+A+LN+++ AKV + P
Sbjct:   193 EVQDLVRRFYMGPDGSLSIDPTMMSDLGEYECKVRNSDGELQTAKAFLNIQYKAKVIYAP 252

Query:    64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH 123
                +LP+    V+ CH +ANP  + + W KD  L + Y    +    NGSL F +V++NH
Sbjct:   253 PEVFLPYGQPAVLDCHFRANPPLKNLRWEKDGLLFDSYNVPGVFYKMNGSLFFAKVDENH 312

Query:   124 QGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ 183
              G YTCTPYN  GT G S  + V+V +PP F++ P+A+Y +K+GE+ ++ CEA + +G  
Sbjct:   313 AGSYTCTPYNDLGTDGPSPVISVIVLRPPIFSVTPKAIYIQKLGEAAELPCEAIDRDGNN 372

Query:   184 KPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
             +P+I W R+DG  LP +R  + GGN+TI GL   D G YEC  +NE ATI   A+L++E 
Sbjct:   373 RPSIIWGRKDGQPLPADRFSLSGGNLTITGLVEGDRGIYECSATNEAATITAEAELMIEN 432

Query:   244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
               P APYN+T  +TE  +T+ W PGY   P+L+  Y +WYR     +W  + V      +
Sbjct:   433 IAPRAPYNLTANSTETCITIRWQPGYLR-PNLE--YTVWYRLMEAPEWRTLRVLDKKVME 489

Query:   304 ITINRLTPATTYEFQVVGKNELGDGMLS 331
              T+  L P   YEF V+ +++ GDGM S
Sbjct:   490 ATVQHLQPGKEYEFMVLSQDKYGDGMFS 517

GO:0007155 "cell adhesion" evidence=ISS

UNIPROTKB|Q9UPX0 IGSF9B "Protein turtle homolog B" [Homo sapiens (taxid:9606)]

 Score = 588 (212.0 bits), Expect = 6.0e-56, P = 6.0e-56
 Identities = 131/395 (33%), Positives = 197/395 (49%)

Query:     8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
             L+ RV I  DGTL+I  V  +DSG Y C  SN +G   +A AYL V++PA+V   P V Y
Sbjct:   276 LKLRVRILIDGTLIIFRVKPEDSGKYTCVPSNSLGRSPSASAYLTVQYPARVLNMPPVIY 335

Query:    68 LPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRY 127
             +P  + G ++C + A P    V W KD R L+  +     +M++GS+      +   G Y
Sbjct:   336 VPVGIHGYIRCPVDAEPPATVVKWNKDGRPLQVEKNLGWTLMEDGSIRIEEATEEALGTY 395

Query:   128 TCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTI 187
             TC PYN  GT G S    ++++ PP FT+ P   Y+++ G  + + C A    G   P I
Sbjct:   396 TCVPYNTLGTMGQSAPARLVLKDPPYFTVLPGWEYRQEAGRELLIPCAAA---GDPFPVI 452

Query:   188 TWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH 247
             TW R+ G         +  G++    L + D G +ECV +N V +I  +  L V GT PH
Sbjct:   453 TW-RKVGKPSRSKHSALPSGSLQFRALSKEDHGEWECVATNVVTSITASTHLTVIGTSPH 511

Query:   248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWY-REQ-GNKDWLPIPVTPPGSTQIT 305
             AP ++    +  +  + W PGY GG   +Q + +W  R Q G  DWL +PV PPG + + 
Sbjct:   512 APGSVRVQVSMTTANVSWEPGYDGG--YEQTFSVWMKRAQFGPHDWLSLPV-PPGPSWLL 568

Query:   306 INRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXXXXRN-VSVT--------EVNN 356
             ++ L P T Y+F V+ +N+LG    S +                V VT            
Sbjct:   569 VDTLEPETAYQFSVLAQNKLGTSAFSEVVTVNTLAFPITTPEPLVLVTPPRCLIANRTQQ 628

Query:   357 GFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKG 391
             G ++SW PP   +  I  Y++++R    W+ L+ G
Sbjct:   629 GVLLSWLPPANHSFPIDRYIMEFRVAERWELLDDG 663

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

ZFIN|ZDB-GENE-060810-28 igsf9b "immunoglobulin superfamily, member 9b" [Danio rerio (taxid:7955)]

 Score = 588 (212.0 bits), Expect = 1.3e-55, P = 1.3e-55
 Identities = 137/401 (34%), Positives = 207/401 (51%)

Query:     8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
             L++RV I  DGTL+I+ +  DDSG Y C  +NG+  P AA AYL V+ PA+V   P   Y
Sbjct:   278 LKSRVKILVDGTLLISALIPDDSGNYTCRPTNGLMTPPAASAYLTVKHPARVVRMPRETY 337

Query:    68 LPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRY 127
             LP  + G + C ++A P   YV WTKD   L   Q    +V   GS+  T  N +  G Y
Sbjct:   338 LPMGMGGKIPCPVQAEPPMLYVNWTKDGASLNLEQYPGWMVNSEGSVFITAANDDAVGMY 397

Query:   128 TCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTI 187
             TCT YN++GT G S   +V+++ PP+F + P A Y ++VG  + + C++Q   G   P I
Sbjct:   398 TCTAYNSYGTMGQSEPTKVILKDPPSFRVSPRAEYLQEVGRDLVIPCQSQ---GDPSPNI 454

Query:   188 TWQRRDGVALPKNRVKIVG-GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
             TW +  G A P++   ++  G++ +  L +   G +EC+ SN VAT+  A  ++V GT P
Sbjct:   455 TWIKV-GPA-PRSPFTVLSNGSLFLRPLSKDHQGTWECLASNRVATVSVATTILVLGTSP 512

Query:   247 HAPYNITGVATEFSV---TLEWLPGYSGGPDLKQNYVIWYRE--QGNKDWLPIPVTPPGS 301
             HA   +T V+ +  +    + W  G+ GG    Q + +W +   +G  +W  IPV P   
Sbjct:   513 HA---VTSVSVDPGIGQANVSWEAGFDGG--YTQRFTVWVKPTVRGKHEWASIPV-PTSK 566

Query:   302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXX------------XXXXXXRNV 349
             T + +  L PAT+Y+F V+ +N+LG G  S I                           +
Sbjct:   567 TSLLVTSLQPATSYQFSVLAQNKLGSGPFSEIVTIKTLAPPTESPTVLTTMAVLSPPTLL 626

Query:   350 SVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNK 390
             S    + G ++ W PPLE  SL  + L   R  G W T+++
Sbjct:   627 SANRTSLGVLLQWVPPLEE-SLTSFALQAKRGKGEWVTIDR 666

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|H9L3A2 IGSF9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 129/405 (31%), Positives = 208/405 (51%)

Query:     8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
             L+ RV I  DG+L++     DD+G Y C  SNG+ +P +A A++ V +PA+VT      +
Sbjct:   140 LQARVRILVDGSLLLQRATPDDAGKYTCIASNGLWKPPSASAFITVLYPAQVTTMLPETH 199

Query:    68 LPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRY 127
             LP  ++G+++C  +ANP    V+WT+D R LE  +        +GS++    N +  G Y
Sbjct:   200 LPKGMRGIIRCPTRANPPLLSVSWTRDGRPLELGKFPGWSTRSDGSIVIATGNDDALGVY 259

Query:   128 TCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTI 187
             TCTPYN++GT G+S    VL++ PP FT++P+  Y ++VG  + + C A    G   PTI
Sbjct:   260 TCTPYNSYGTAGASRPTRVLLKDPPTFTVRPKEEYFQEVGRELVIPCTAH---GDPPPTI 316

Query:   188 TWQRRDGVALPKNRVKI---VGGNITI--EGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
             TW +R       +  +I   V GN ++    L +   G +EC  +N VA++  A  + V 
Sbjct:   317 TWGKRVPAVQVGSAGQIGAQVDGNSSLIFHPLIKEQHGVWECTATNAVASVSTATTVHVL 376

Query:   243 GTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
             GT PHA  N++ +    +  + W PG+ GG    Q + +WY    + DW+ + V PPG+ 
Sbjct:   377 GTSPHAVTNVSVLPLLLAANISWEPGFDGG--YFQRFSVWYTPLAHHDWVSLAV-PPGAQ 433

Query:   303 QITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXXXX---------------- 346
              + +  L P T+Y+F V+ +N+LG G  S I                             
Sbjct:   434 HLLVENLQPDTSYQFSVLAQNKLGSGPFSQIVTSVPRGFPVTTVPPEPPAVTVHILLSPP 493

Query:   347 RNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTD-GSWKTLNK 390
             + +S  E   G ++ WQPP + +  +  Y ++ R D G W+ L +
Sbjct:   494 QALSANETARGVLLRWQPPAQLSVPLSGYALELRQDRGGWEVLER 538

GO:0016358 "dendrite development" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

UNIPROTKB|Q9P2J2 IGSF9 "Protein turtle homolog A" [Homo sapiens (taxid:9606)]

 Score = 522 (188.8 bits), Expect = 5.0e-49, P = 5.0e-49
 Identities = 137/447 (30%), Positives = 216/447 (48%)

Query:     5 VGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPT 64
             +  L+ RV I  DG+L +     DD+G Y C  SNG+  P +A AYL V +PA+VT  P 
Sbjct:   271 ISRLQPRVRILVDGSLRLLATQPDDAGCYTCVPSNGLLHPPSASAYLTVLYPAQVTAMPP 330

Query:    65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQ 124
                LP  + GV++C ++ANP   +V+WTKD + L+  +         GSL+    N++  
Sbjct:   331 ETPLPIGMPGVIRCPVRANPPLLFVSWTKDGKALQLDKFPGWSQGTEGSLIIALGNEDAL 390

Query:   125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184
             G Y+CTPYN+ GT G S    VL++ PPAF  +P+  Y ++VG  + + C AQ   G   
Sbjct:   391 GEYSCTPYNSLGTAGPSPVTRVLLKAPPAFIERPKEEYFQEVGRELLIPCSAQ---GDPP 447

Query:   185 PTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244
             P ++W +  G  L          ++ +  L +   G++EC  SN VA +  +  + V GT
Sbjct:   448 PVVSWTKV-GRGLQGQAQVDSNSSLILRPLTKEAHGHWECSASNAVARVATSTNVYVLGT 506

Query:   245 QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYR------EQGNKDWLPIPVTP 298
              PH   N++ VA      + W PG+ GG    Q + +WY       ++ + DW+ + V P
Sbjct:   507 SPHVVTNVSVVALPKGANVSWEPGFDGG--YLQRFSVWYTPLAKRPDRMHHDWVSLAV-P 563

Query:   299 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXX-XXRNVSVTEVNNG 357
              G+  + +  L P T Y+F V+ +N+LG G  S I                +  TE+   
Sbjct:   564 VGAAHLLVPGLQPHTQYQFSVLAQNKLGSGPFSEIVLSAPEGLPTTPAAPGLPPTEI--- 620

Query:   358 FVISWQPPLERASLIQYYLIKYRTD-GSWKTLNKGQIRPEE-NSYLGEYREQGNKDWLPI 415
                   PPL         L+  RT  G     +  ++ P+  + Y+ E R QG++ W  +
Sbjct:   621 -----PPPLSPPR----GLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGR-QGSQGWEVL 670

Query:   416 -PVTPPGSTQITINRLTPATTYEFQVV 441
              P      T++ +  L     YEF++V
Sbjct:   671 DPAVAGTETELLVPGLIKDVLYEFRLV 697

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|F1MNG8 IGSF9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 518 (187.4 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 137/448 (30%), Positives = 221/448 (49%)

Query:     5 VGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPT 64
             +  L+ RV I  DG+L +     DD+G Y C  SNG+  P +A AYL V +PA+VT  P 
Sbjct:   271 ISRLQPRVRILVDGSLRLQAAQPDDAGRYTCVPSNGLPRPPSASAYLTVLYPAQVTAMPP 330

Query:    65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQ 124
                LP  ++GV++C ++ANP   +V+WTKD + L+  +         GSL+    N++  
Sbjct:   331 ETPLPVGMRGVIRCPVRANPPLLFVSWTKDGQALQLDKFPGWSQGPEGSLIIALGNEDAL 390

Query:   125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184
             G Y+CTPYN+ GT G S    VL++ PPAF  +P+  Y ++VG  + + C A+   G   
Sbjct:   391 GEYSCTPYNSLGTAGPSPVTRVLLKAPPAFLERPKEEYFQEVGRELLIPCSAR---GDPS 447

Query:   185 PTITWQRRDGVALPKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
             PTI+W +  G   P+ + ++    ++ +  L +   G +EC  SN VA +  +  + V G
Sbjct:   448 PTISWAKV-GRG-PQGQAQVDSNSSLILRPLTKEAHGRWECTASNAVARVAASTNVYVLG 505

Query:   244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYR------EQGNKDWLPIPVT 297
             T PH   N++ V       + W PG+ GG    Q + +WY       ++ + DW+ + V 
Sbjct:   506 TSPHVVTNVSVVPLPKGANVSWEPGFDGG--YLQRFSVWYTPLAKRPDRAHHDWVSLAV- 562

Query:   298 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXX-XXRNVSVTEVNN 356
             P G+  + +  L P T Y+F V+ +N+LG G  S I               +   TE++ 
Sbjct:   563 PVGTAFLLVPGLQPHTQYQFSVLAQNKLGSGPFSEIVLSAPEGLPTTPAAPSPPPTEMS- 621

Query:   357 GFVISWQPPLERASLIQYYLIKYRTD-GSWKTLNKGQIRPEE-NSYLGEYREQGNKDWLP 414
                    PPL         L+  RT  G     +  ++ P+  + Y+ E R QG++ W  
Sbjct:   622 -------PPLSPPR----GLVAVRTPRGVLLHWDPPELVPKRLDGYILEGR-QGSQGWEV 669

Query:   415 IPVTPPGST-QITINRLTPATTYEFQVV 441
             +     G+  Q+ +  L     YEF++V
Sbjct:   670 LDRAVAGTEMQLLVPGLIKDVLYEFRLV 697

GO:0030425 "dendrite" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

RGD|1304566 Igsf9 "immunoglobulin superfamily, member 9" [Rattus norvegicus (taxid:10116)]

 Score = 514 (186.0 bits), Expect = 3.6e-48, P = 3.6e-48
 Identities = 142/466 (30%), Positives = 226/466 (48%)

Query:     5 VGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPT 64
             +  L++RV I  DG+L +     DD+G Y C  SNG   P +A AYL V +PA+VT  P 
Sbjct:   271 ISRLQSRVRILVDGSLWLQATQPDDAGHYTCVPSNGFPHPPSASAYLTVLYPAQVTVMPP 330

Query:    65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQ 124
                LP  ++GV++C ++ANP   +VTWTKD + L+  +     +   GSL+    N++  
Sbjct:   331 ETPLPIGMRGVIRCPVRANPPLLFVTWTKDGQALQLDKFPGWSLGPEGSLVIALGNEDAL 390

Query:   125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184
             G Y+CTPYN+ GT GSS    VL++ PPAF  +P+  Y ++VG  + + C A+   G   
Sbjct:   391 GEYSCTPYNSLGTAGSSPVTRVLLKAPPAFIDQPKEEYFQEVGRDLLIPCSAR---GDPP 447

Query:   185 PTITWQRRDGVALPKNRVKIVGGN-ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
             P ++W +  G  L + + ++   N + +  L +   G +EC   N VA +  +  + V G
Sbjct:   448 PIVSWAKV-GRGL-QGQAQVDSNNSLILRPLTKEAHGRWECSARNAVAHVTISTNVYVLG 505

Query:   244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYR------EQGNKDWLPIPVT 297
             T PH   N++ V       + W PG+ GG    Q + +WY       ++ + DW+ + V 
Sbjct:   506 TSPHVVTNVSVVPLPKGANVSWEPGFDGG--YLQRFSVWYTPLAKRPDRAHHDWVSLAV- 562

Query:   298 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXX-XXRNVSVTEVNN 356
             P G+T + +  L   T Y+F V+ +N+LG G  S I                +  TE+  
Sbjct:   563 PMGATHLLVPGLQAYTQYQFSVLAQNKLGSGPFSEIVLSIPEGLPTTPAVPRLPPTEM-- 620

Query:   357 GFVISWQPPLERASLIQYYLIKYRTD-GSWKTLNKGQIRPEE-NSYLGEYREQGNKDWLP 414
                    PPL         L+  RT  G     +  ++ PE  + Y+ E R QG++ W  
Sbjct:   621 ------PPPLSPPR----GLVAVRTPRGVLLHWDPPELIPERLDGYILEGR-QGSQGWEI 669

Query:   415 IPVTPPGST-QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
             +     G+  Q+ +  L     YEF++V   +      SNI  + T
Sbjct:   670 LDQGVAGTEIQLLVPGLIKDVLYEFRLVAFADSYVSDPSNIANIST 715

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA;ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030425 "dendrite" evidence=IEA;ISO

GO:0045202 "synapse" evidence=IEA

MGI|MGI:2135283 Igsf9 "immunoglobulin superfamily, member 9" [Mus musculus (taxid:10090)]

 Score = 510 (184.6 bits), Expect = 9.7e-48, P = 9.7e-48
 Identities = 114/336 (33%), Positives = 180/336 (53%)

Query:     5 VGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPT 64
             +  L++RV I  DG+L +     DD+G Y C  SNG   P +A AYL V +PA+VT  P 
Sbjct:   271 ISRLQSRVRILVDGSLWLQATQPDDAGHYTCVPSNGFLHPPSASAYLTVLYPAQVTVMPP 330

Query:    65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQ 124
                LP  ++GV++C ++ANP   +VTWTKD + L+  +     +   GSL+    N+N  
Sbjct:   331 ETPLPTGMRGVIRCPVRANPPLLFVTWTKDGQALQLDKFPGWSLGPEGSLIIALGNENAL 390

Query:   125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184
             G Y+CTPYN+ GT G S   +VL++ PPAF  +P+  Y ++VG  + + C A+   G   
Sbjct:   391 GEYSCTPYNSLGTAGPSPVTQVLLKAPPAFIDQPKEEYFQEVGRELLIPCSAR---GDPP 447

Query:   185 PTITWQRRDGVALPKNRVKIVGGN-ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
             P ++W +  G  L + + ++   N + +  L +   G +EC  SN VA +  +  + V G
Sbjct:   448 PIVSWAKV-GRGL-QGQAQVDSNNSLVLRPLTKEAQGRWECSASNAVARVTTSTNVYVLG 505

Query:   244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYR------EQGNKDWLPIPVT 297
             T PH   N++ V       + W PG+ GG    Q + +WY       ++ + DW+ + V 
Sbjct:   506 TSPHVVTNVSVVPLPKGANVSWEPGFDGG--YLQRFSVWYTPLAKRPDRAHHDWVSLAV- 562

Query:   298 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 333
             P G+T + +  L     Y+F V+ +N+LG G  S I
Sbjct:   563 PIGATHLLVPGLQAHAQYQFSVLAQNKLGSGPFSEI 598

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016358 "dendrite development" evidence=IMP

GO:0030054 "cell junction" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030425 "dendrite" evidence=IMP

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|F1PDU1 NEO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 357 (130.7 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
 Identities = 118/402 (29%), Positives = 180/402 (44%)

Query:     8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAA-QAYLNVEFPAKVTFTPTVQ 66
             L+ R++    GTLVIN     D GLY C V +G G P+ + +A L V  P +VT    V 
Sbjct:   165 LDDRIIKLPSGTLVINNATEGDGGLYRCVVESG-GPPKYSDEAELKVLLP-EVTHRYLV- 221

Query:    67 YL--PFRL-----QGVV-QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR 118
             +L  P  L     Q VV  C     PT   + W K++  L+   ++ +V++  GSL  + 
Sbjct:   222 FLKQPSSLVRVIGQSVVLPCVASGLPT-PTIRWMKNEEALDTESSEKLVLLAGGSLEISD 280

Query:   119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQE 178
             V ++  G Y C   N  G +    Q E+ V+  P F  +P  +Y     ES+D+  E  E
Sbjct:   281 VTEDDAGTYFCIADN--GNETIEAQAELTVQAQPEFLKQPTNIYAH---ESMDIVFEC-E 334

Query:   179 AEGTQKPTITWQRRDGVALPKNRVKIVGG-NITIEGLRRVDFGYYECVVSNEVATIVQAA 237
               G   PT+ W +   + +P +  KIV   N+ + GL + D G+Y+C+  N+V      A
Sbjct:   335 VTGKPTPTVKWIKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNAQAGA 394

Query:   238 QLVV--------EGTQPHAPYNITG--VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG 287
             QL++         G  P AP ++    V+T F + L W    S        Y ++Y ++G
Sbjct:   395 QLIILEHDSPATTGPLPSAPRDVVASLVSTRF-IKLTWRTPASDPHGDNLTYSVFYTKEG 453

Query:   288 NKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXXXXXXXX-- 345
                      + PG  Q+TI  L PAT Y F+VV +N+ G G  S                
Sbjct:   454 IARERVENTSRPGEMQVTIQNLMPATVYVFRVVAQNKHGSGESSAPLRVETQPEVQLPGP 513

Query:   346 XRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWK 386
               N+     +     ++W+ PL     IQ Y + Y   G+ K
Sbjct:   514 APNIRAYAASPTSITVTWETPLSGNGEIQNYKLYYMEKGTDK 555

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q967D7	TUTL_DROME	No assigned EC number	0.6736	0.8652	0.2599	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	460
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	2e-15
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	1e-13
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	2e-09
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-09
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	1e-08
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	4e-08
smart00410	85	smart00410, IG_like, Immunoglobulin like	4e-08
smart00409	85	smart00409, IG, Immunoglobulin	4e-08
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	5e-08
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	7e-08
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	1e-07
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	4e-07
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	4e-07
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	6e-07
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	7e-07
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	3e-06
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	4e-06
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	5e-06
cd00096	74	cd00096, Ig, Immunoglobulin domain	8e-06
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-05
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	4e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	5e-05
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	6e-05
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	6e-05
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	1e-04
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	1e-04
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	1e-04
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	2e-04
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	4e-04
smart00410	85	smart00410, IG_like, Immunoglobulin like	5e-04
smart00409	85	smart00409, IG, Immunoglobulin	5e-04
cd00096	74	cd00096, Ig, Immunoglobulin domain	5e-04
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	5e-04
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	6e-04
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	7e-04
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	0.001
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	0.001
cd05714	106	cd05714, Ig_CSPGs_LP, Immunoglobulin (Ig)-like dom	0.001
cd00096	74	cd00096, Ig, Immunoglobulin domain	0.002
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	0.003
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	0.003
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	0.003
cd05877	106	cd05877, Ig_LP_like, Immunoglobulin (Ig)-like doma	0.003

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 71.4 bits (175), Expect = 2e-15
 Identities = 38/118 (32%), Positives = 50/118 (42%), Gaps = 26/118 (22%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           P PP N+ VT+V      +SW PP +    I  Y++                        
Sbjct: 1   PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVV------------------------ 36

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
            EYRE+G+ DW  + VTP   T  T+  L P T YEF+V   N  G+   S  V V T
Sbjct: 37  -EYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 66.0 bits (161), Expect = 1e-13
 Identities = 37/94 (39%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 246 PHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P  P N+     T  SVTL W P    G  +   YV+ YRE+G+ DW  + VTP   T  
Sbjct: 1   PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPI-TGYVVEYREKGSGDWKEVEVTPGSETSY 59

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
           T+  L P T YEF+V   N  G+   S  V V T
Sbjct: 60  TLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 27/110 (24%)

Query: 344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402
             P N++VT+V      +SW PP      I  Y ++YR                      
Sbjct: 1   SAPTNLTVTDVTSTSLTLSWSPPPGNGP-ITGYEVEYRPVN------------------- 40

Query: 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS 452
                G ++W  I V P  +T  T+  L P T YE +V   N  G+G  S
Sbjct: 41  -----GGEEWKEITV-PGTTTSYTLTGLKPGTEYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN---RVKIVGGN 208
           P FT KP+ + + + GES    C      G   PT++W  +DG  L  +   +V   GG 
Sbjct: 1   PKFTQKPKDV-EVQEGESARFTCTV---TGDPDPTVSW-FKDGQPLRSSDRFKVTYEGGT 55

Query: 209 --ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
             +TI  ++  D G Y CV +N       +A+L V
Sbjct: 56  YTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 26/108 (24%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           P PP N+ VT+V      +SW+PP +    I  Y++ YR                     
Sbjct: 1   PSPPSNLRVTDVTSTSVTLSWEPPPD--DGITGYIVGYR--------------------- 37

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
                +   +W  + VTP  ST  T+  L P T YEF+V   N  G+G
Sbjct: 38  -VEYREEGSEWKEVNVTPS-STSYTLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 50.0 bits (119), Expect = 4e-08
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 178 EAEGTQKPTITWQRRDGVALPKNRVKIVGG-NITIEGLRRVDFGYYECVVSNEVATIVQA 236
           E  G   PT+ W +   + +P +  KIV   N+ + GL + D G+Y+C+  N+V  +   
Sbjct: 7   EVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQAG 66

Query: 237 AQLVV 241
           AQL++
Sbjct: 67  AQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 50.2 bits (120), Expect = 4e-08
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIVGGN----ITIEGLRRVDF 219
           K GESV + CEA    G+  P +TW ++ G  L    R  +        +TI  +   D 
Sbjct: 7   KEGESVTLSCEA---SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDS 63

Query: 220 GYYECVVSNEVATIVQAAQLVV 241
           G Y C  +N   +      L V
Sbjct: 64  GTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 50.2 bits (120), Expect = 4e-08
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIVGGN----ITIEGLRRVDF 219
           K GESV + CEA    G+  P +TW ++ G  L    R  +        +TI  +   D 
Sbjct: 7   KEGESVTLSCEA---SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDS 63

Query: 220 GYYECVVSNEVATIVQAAQLVV 241
           G Y C  +N   +      L V
Sbjct: 64  GTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDG--VALPKNRVKIV-GGNITIEGLRRVDFGYY 222
           VGE   + C      G  +PT++W R+DG  + L   RV+IV  GN+ I   R+ D G Y
Sbjct: 10  VGEMAVLEC--SPPRGHPEPTVSW-RKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTY 66

Query: 223 ECVVSNEVAT-IVQAAQLVV 241
           +CV +N V      AA+L V
Sbjct: 67  KCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 49.0 bits (117), Expect = 7e-08
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
           +++C  KA P    ++W+K   LL    +  I +  +GSL    V ++ +G+YTC   N 
Sbjct: 5   IIECKPKAAPK-PTISWSKGTELLT--NSSRICIWPDGSLEILNVTKSDEGKYTCFAENF 61

Query: 135 HGTQGSSGQMEV 146
            G   S+G + V
Sbjct: 62  FGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
           AP N+T    T  S+TL W P    GP     Y + YR     +       P  +T  T+
Sbjct: 2   APTNLTVTDVTSTSLTLSWSPPPGNGPI--TGYEVEYRPVNGGEEWKEITVPGTTTSYTL 59

Query: 307 NRLTPATTYEFQVVGKNELGDGMLS 331
             L P T YE +V   N  G+G  S
Sbjct: 60  TGLKPGTEYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 47.2 bits (112), Expect = 4e-07
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQG---NKDWLPIPVTPPGSTQITINRLTPATTYE 316
           SVTL W P    G      Y++ YR +      +W  + VTP  ST  T+  L P T YE
Sbjct: 16  SVTLSWEPPPDDGIT---GYIVGYRVEYREEGSEWKEVNVTPS-STSYTLTGLKPGTEYE 71

Query: 317 FQVVGKNELGDG 328
           F+V   N  G+G
Sbjct: 72  FRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKIVGGNITIEGLRRVDFGYYECV 225
           G+SV + C A   EG   P ITW  +DG  LP  NR    G  +TI+ +   D G Y CV
Sbjct: 2   GQSVTLTCPA---EGNPVPNITW-LKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCV 57

Query: 226 VSNEV 230
             N  
Sbjct: 58  AENSA 62

Length = 63

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 46.8 bits (111), Expect = 6e-07
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRVKIVGGNITIEGLRRVDFGYYEC 224
           +G S+   C+A    G  +P   W + +G  L   NR+++  G++ I  L   D G Y+C
Sbjct: 13  IGSSLRWECKAS---GNPRPAYRWLK-NGQPLASENRIEVEAGDLRITKLSLSDSGMYQC 68

Query: 225 VVSNEVATIVQAAQLVV 241
           V  N+  TI  +A+L V
Sbjct: 69  VAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 46.5 bits (110), Expect = 7e-07
 Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYEC 224
           G++VD  CEAQ   G  +P I W +  G  L  +R  +V   G + I  +   D G YEC
Sbjct: 2   GQTVDFLCEAQ---GYPQPVIAWTK-GGSQLSVDRRHLVLSSGTLRISRVALHDQGQYEC 57

Query: 225 VVSNEVATIVQAAQLVV 241
              N V +    AQL V
Sbjct: 58  QAVNIVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN-ITIEGLRRVDFGYYECVVSN 228
           V+  CE     G   PT+ W++ DG  LPK R +I+    + I  +   D G Y C   N
Sbjct: 1   VEFQCEVG---GDPVPTVLWRKEDG-ELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAEN 56

Query: 229 EVATIVQAAQLVV 241
            V  I  +A L V
Sbjct: 57  MVGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 18/43 (41%), Positives = 24/43 (55%)

Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
          RV I  DG L+I      D G Y C  +N +GE ++A A L+V
Sbjct: 44 RVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
            + C  + NP    +TW KD + L      +  V    +L    V+    G YTC   N+
Sbjct: 6   TLTCPAEGNPVPN-ITWLKDGKPL---PESNRFVASGSTLTIKSVSLEDSGLYTCVAENS 61

Query: 135 HG 136
            G
Sbjct: 62  AG 63

Length = 63

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 43.2 bits (101), Expect = 8e-06
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEP-----YQTKDIVVMQNGSLLFTRVNQNHQGRYTC 129
            + C     P    +TW K+ + L        ++       + +L  + V     G YTC
Sbjct: 2   TLTCLASGPPPPT-ITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 130 TPYNAHGTQGSS 141
              N+ GT  +S
Sbjct: 61  VASNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
            C +  +P    V+W KD + L    +    V   G   +L  + V  + +G+YTC   N
Sbjct: 21  TCTVTGDPDPT-VSWFKDGQPLRS--SDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATN 77

Query: 134 AHGTQGSSGQMEV 146
           + G   +S ++ V
Sbjct: 78  SAGEAEASAELTV 90

Length = 90

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 8/79 (10%)

Query: 167 GESVDMHCEAQEAEGTQKPTITWQRRDGV---ALPKNRVKIV-GGNITIEGLRRVDFGYY 222
           GE+  + CEA+   G  +PTITW R +GV    LP +  + V GG + +  ++  D   Y
Sbjct: 1   GETGRLDCEAE---GIPQPTITW-RLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVY 56

Query: 223 ECVVSNEVATIVQAAQLVV 241
           +C  SN    ++  A + V
Sbjct: 57  QCNASNVHGYLLANAFVHV 75

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 164 RKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN------RVKIVGGNITIEGLRRV 217
              G +V + C A    G  +PTITW + DG    K       +V+     + +E +   
Sbjct: 6   VPAGSTVRLKCPAS---GNPRPTITWLK-DGKPFKKEHRIGGYKVRKKKWTLILESVVPS 61

Query: 218 DFGYYECVVSNEVATI 233
           D G Y C+V N+  +I
Sbjct: 62  DSGKYTCIVENKYGSI 77

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 10/86 (11%)

Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR--DGVALPKNRVKIVGGNI 209
           P  TI PE   + KV     ++C A+   G+  PT  W     +    P +R  +VGGN+
Sbjct: 8   PDDTIFPEESDEGKVS----LNCRAR---GSPPPTYRWLMNGTEIDDEPDSRYSLVGGNL 60

Query: 210 TIEGLRRV-DFGYYECVVSNEVATIV 234
            I    +  D G Y+C+ SN V T++
Sbjct: 61  VISNPSKAKDAGRYQCLASNIVGTVL 86

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 19/74 (25%), Positives = 24/74 (32%), Gaps = 11/74 (14%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
            + C    NP   Y TW KD   L   Q                V+    G YTC   N 
Sbjct: 18  TLTCSAPGNPPPNY-TWYKDGVPLSSSQNG---------FFTPNVSAEDSGTYTCVASN- 66

Query: 135 HGTQGSSGQMEVLV 148
            G   +S  + + V
Sbjct: 67  GGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
           +++C  KA P  ++ +W+K   LL       I +  +GSL    + +  +G YTC   N 
Sbjct: 5   IIECKPKAAPKPKF-SWSKGTELL--VNNSRISIWDDGSLEILNITKLDEGSYTCFAENN 61

Query: 135 HGTQGSSGQMEV 146
            G   S+G + V
Sbjct: 62  RGKANSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 179 AEGTQKPTITWQRRDGVALPKNRVKIVGGNIT--IEGLRRVDFGYYECVVSNEVATIVQA 236
           AEG   P I+W +  G  LP +R K    N T  I+ +   D G Y C  SN + +    
Sbjct: 7   AEGLPTPEISWIKIGG-ELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHT 65

Query: 237 AQLVVE 242
             + VE
Sbjct: 66  ISVTVE 71

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNIT 210
            P  T+ P        G  V + C A+   G   PTI+W R   ++     +   G  +T
Sbjct: 1   KPVITVSPSPS--VTSGGGVTLTCSAEG--GPPPPTISWYRNGSISGGSGGLGSSGSTLT 56

Query: 211 IEGLRRVDFGYYECVVSN 228
           +  +   D G Y CV SN
Sbjct: 57  LSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 8  LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
          L  R+ +  +G+L+I  V  +DSG Y+C+VSN +G   +    L V
Sbjct: 34 LAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 81  KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140
              P      W K+    +P  +++ + ++ G L  T+++ +  G Y C   N HGT  +
Sbjct: 26  NPRPA---YRWLKNG---QPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYA 79

Query: 141 SGQMEV 146
           S ++ V
Sbjct: 80  SAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPY 132
            + C    +P    VTW K    L     +  V       +L  + V     G YTC   
Sbjct: 13  TLSCEASGSPP-PEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAAT 71

Query: 133 NAHGTQGSSGQMEVLV 148
           N+ G+   S    + V
Sbjct: 72  NSSGSA--SSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPY 132
            + C    +P    VTW K    L     +  V       +L  + V     G YTC   
Sbjct: 13  TLSCEASGSPP-PEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAAT 71

Query: 133 NAHGTQGSSGQMEVLV 148
           N+ G+   S    + V
Sbjct: 72  NSSGSA--SSGTTLTV 85

Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 19/77 (24%), Positives = 25/77 (32%), Gaps = 11/77 (14%)

Query: 170 VDMHCEAQEAEGTQKPTITWQRRDG--------VALPKNRVKIVGGNITIEGLRRVDFGY 221
           V + C A    G   PTITW +                         +TI  +   D G 
Sbjct: 1   VTLTCLA---SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGT 57

Query: 222 YECVVSNEVATIVQAAQ 238
           Y CV SN   T+  +  
Sbjct: 58  YTCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 179 AEGTQKPTITWQRRDGVALPKNRVKIVGGNIT--IEGLRRVDFGYYECVVSNEVATIVQA 236
           AEG   P + W R DG  L  NR K +  N T  ++ +   D G Y C   N   +    
Sbjct: 7   AEGLPTPEVHWDRIDG-PLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHH 65

Query: 237 AQLVVE 242
             + VE
Sbjct: 66  YTVTVE 71

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 155 TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGL 214
           T++     + + G  V   C A+    +   T+ W R  G  LP +R     G +TI  +
Sbjct: 4   TVEEPRSQEVRPGADVSFICRAKSK--SPAYTLVWTRVGG-GLP-SRAMDFNGILTIRNV 59

Query: 215 RRVDFGYYECVVSNEVATIVQAAQL 239
           +  D G Y C  SN + T    A L
Sbjct: 60  QLSDAGTYVCTGSNMLDTDEATATL 84

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNIT 210
           P    + P+  Y  K G++V + C A    G   P I W++ DG       + + G  + 
Sbjct: 1   PSIIVVFPKDTYALK-GQNVTLECFAL---GNPVPQIKWRKVDGSMPSSAEISMSGAVLK 56

Query: 211 IEGLRRVDFGYYECVVSN 228
           I  ++  D G YEC   N
Sbjct: 57  IPNIQFEDEGTYECEAEN 74

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
          R  +  +G   TL I+ V  DD G Y C  +N  GE +A+ A L V
Sbjct: 46 RFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEAS-AELTV 90

Length = 90

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG-VALPKNRVKIVGGNIT 210
           P  TI PE   + KV     ++C A+       P   W++ +  + L  +R  +VGGN+ 
Sbjct: 8   PIDTIYPEESTEGKV----SVNCRAR---ANPFPIYKWRKNNLDIDLTNDRYSMVGGNLV 60

Query: 211 IEGL-RRVDFGYYECVVSNEVATI 233
           I    +  D G Y C+VSN    +
Sbjct: 61  INNPDKYKDAGRYVCIVSNIYGKV 84

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143191 cd05714, Ig_CSPGs_LP, Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 6  GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGI 41
            +        D +LVI  +  +DSG Y CEV +GI
Sbjct: 56 VRVPLYPADPGDASLVITDLRLEDSGRYRCEVIDGI 91

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. There is considerable evidence that HA-binding CSPGs are involved in developmental processes in the central nervous system. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. Length = 106

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 14/45 (31%), Positives = 18/45 (40%)

Query: 2  NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA 46
          +       +R       TL I+ V  +DSG Y C  SN  G   A
Sbjct: 27 SVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTVSA 71

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-GGNITIEGLRRVDFGYYECV 225
           G  V + C+ +      KPTI+W +   +    +R+ I   G++ I  + + D G Y C 
Sbjct: 1   GGDVIIECKPK---AAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCF 57

Query: 226 VSNEVATIVQAAQLVV 241
             N          L V
Sbjct: 58  AENFFGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 12/86 (13%)

Query: 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVAL--------PKNRVKIV-GGNITIEGLRRV 217
           G +V   CEA    G  +P I WQ+     L          +R  +   G++TI  ++R 
Sbjct: 1   GRTVTFQCEAT---GNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRS 57

Query: 218 DFGYYECVVSNEVATIVQAAQLVVEG 243
           D GYY C   N   +I+  A L V  
Sbjct: 58  DVGYYICQTLNVAGSILTKAYLEVTD 83

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GSLLFTRVN----QNHQGRYTC 129
           V++C  K NP   + +WT++    +P +   + +  + G+L+   +N    ++++G Y C
Sbjct: 2   VIKCEAKGNPPPTF-SWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQC 60

Query: 130 TPYNAHGTQGSS 141
              N  GT  S+
Sbjct: 61  YASNELGTAISN 72

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143285 cd05877, Ig_LP_like, Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)

Query: 6  GSLETRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGI 41
          GS + RV +++    D +LVI  +  +D G Y CEV +G+
Sbjct: 52 GSYQGRVFLRRAHDLDASLVITDLRLEDYGRYRCEVIDGL 91

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	460
KOG4221|consensus	1381		100.0
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		100.0
KOG4222|consensus	1281		100.0
KOG4222|consensus	1281		100.0
KOG4194|consensus	873		99.96
KOG4194|consensus	873		99.93
PHA02785	326	IL-beta-binding protein; Provisional	99.93
PHA02785	326	IL-beta-binding protein; Provisional	99.91
KOG0196|consensus	996		99.79
PHA02826	227	IL-1 receptor-like protein; Provisional	99.78
PHA02826	227	IL-1 receptor-like protein; Provisional	99.75
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.65
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.63
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.62
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.61
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.6
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.6
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.58
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.58
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.56
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.56
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.55
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.55
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.55
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.54
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.54
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.54
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.53
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.53
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.53
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.53
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.53
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.52
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.52
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.52
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.52
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.51
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.51
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.51
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.51
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.51
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.5
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.5
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.5
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.5
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.49
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.49
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.49
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.49
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.49
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.48
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.48
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.48
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.48
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.47
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.47
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.46
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.46
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.46
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.44
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.44
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.44
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.44
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.44
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.44
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.43
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.43
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.43
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.43
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.42
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.41
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.41
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.41
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.41
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.4
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.4
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.4
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.39
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.39
KOG3515|consensus	741		99.38
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.38
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.37
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.37
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.37
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.37
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.36
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.35
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.35
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	99.35
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.35
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.34
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.33
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.33
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.33
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.33
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.32
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.31
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.31
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.3
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.29
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.29
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.29
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.29
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.26
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.26
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.26
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.26
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.26
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.26
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.24
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.24
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.24
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.24
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.24
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.24
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.23
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.23
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.23
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.23
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.23
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.22
KOG3515|consensus	741		99.22
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.22
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.21
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.21
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.21
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.21
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.21
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.21
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.2
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.2
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.19
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.19
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.19
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.19
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.18
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.17
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.17
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.16
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.16
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.16
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.16
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.16
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.15
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.15
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.14
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.14
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.13
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.13
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.13
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.11
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.11
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.11
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.11
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.1
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.1
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.1
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.09
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.09
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.08
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.08
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.07
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.07
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.07
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.07
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.06
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.06
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.05
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.04
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.03
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.03
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.01
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.0
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.0
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.0
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.99
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.98
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.97
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.96
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.96
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.96
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.96
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.95
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.94
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.94
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.93
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.92
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.91
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.91
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.91
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.91
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.9
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.9
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.9
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.88
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.87
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.85
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.85
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.83
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.82
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.82
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.81
smart00409	86	IG Immunoglobulin.	98.81
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.81
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.8
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.8
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.79
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.78
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.78
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.78
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.76
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.75
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.75
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.73
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.71
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.69
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.68
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.67
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.67
PHA03376	221	BARF1; Provisional	98.66
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.64
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.63
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.62
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.58
PHA03376	221	BARF1; Provisional	98.58
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.57
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.57
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.55
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.54
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.54
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.53
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.53
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.52
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.52
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.52
KOG4802|consensus	516		98.52
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.5
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	98.48
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.47
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.47
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.47
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.47
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.46
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.46
KOG0196|consensus	996		98.45
PHA03270	466	envelope glycoprotein C; Provisional	98.42
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.41
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.41
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.4
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.4
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.39
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.39
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.36
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.36
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.36
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	98.35
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.35
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.33
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.33
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.33
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.32
smart00409	86	IG Immunoglobulin.	98.32
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.32
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.32
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.32
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.31
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.31
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.3
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.3
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.26
PHA03269	566	envelope glycoprotein C; Provisional	98.25
PHA03273	486	envelope glycoprotein C; Provisional	98.25
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.23
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.23
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.22
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.2
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.17
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.17
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.16
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.15
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.13
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.13
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.13
PHA03271	490	envelope glycoprotein C; Provisional	98.08
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.06
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.05
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.03
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.03
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.02
KOG4367|consensus	699		98.01
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.0
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	97.98
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	97.97
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.97
KOG4258|consensus	1025		97.95
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.93
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.92
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	97.91
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.89
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.88
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.87
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.86
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.85
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.85
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.84
KOG0613|consensus	1205		97.84
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.84
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.84
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.82
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	97.82
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.81
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.81
smart00407	75	IGc1 Immunoglobulin C-Type.	97.8
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.8
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.8
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	97.8
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.79
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.78
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.78
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.78
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.77
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.75
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	97.73
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.73
KOG4258|consensus	1025		97.68
PHA02633	63	hypothetical protein; Provisional	97.68
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.64
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.64
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.61
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.59
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.57
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.56
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.5
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.49
KOG4152|consensus	830		97.47
smart00406	81	IGv Immunoglobulin V-Type.	97.45
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.45
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.43
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.39
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.37
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.36
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.35
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.34
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.29
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.28
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.25
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.24
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.24
KOG1480|consensus	909		97.15
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.14
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	97.1
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.04
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.03
PHA02633	63	hypothetical protein; Provisional	97.02
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	96.95
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.93
KOG0613|consensus	1205		96.92
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	96.87
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	96.85
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	96.72
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	96.69
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	96.69
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	96.63
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	96.63
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	96.62
smart00406	81	IGv Immunoglobulin V-Type.	96.62
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.61
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	96.48
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.41
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.37
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	96.36
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	96.34
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.32
PHA03270	466	envelope glycoprotein C; Provisional	96.28
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.24
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.04
KOG4367|consensus	699		95.91
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	95.91
KOG1480|consensus	909		95.88
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	95.81
PHA02982	251	hypothetical protein; Provisional	95.77
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.74
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	95.64
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	95.48
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	95.36
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	95.24
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	95.24
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	95.1
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	95.01
PHA03269	566	envelope glycoprotein C; Provisional	94.84
KOG4802|consensus	516		94.59
KOG4806|consensus	454		94.58
PHA02914	500	Immunoglobulin-like domain protein; Provisional	94.36
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	94.25
PHA03042	286	CD47-like protein; Provisional	94.22
smart00407	75	IGc1 Immunoglobulin C-Type.	94.12
PHA03273	486	envelope glycoprotein C; Provisional	93.99
PHA03286	492	envelope glycoprotein E; Provisional	93.99
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	93.84
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	93.84
PHA02865	338	MHC-like TNF binding protein; Provisional	93.81
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	93.81
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	93.73
COG4733	952	Phage-related protein, tail component [Function un	93.48
KOG4597|consensus	560		92.96
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	92.86
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	92.73
PHA02914	500	Immunoglobulin-like domain protein; Provisional	92.69
KOG3632|consensus	1335		92.64
cd05770	93	IgC_beta2m Class I major histocompatibility comple	92.43
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	92.21
PHA03283	542	envelope glycoprotein E; Provisional	92.11
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	92.01
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	92.0
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	91.33
COG3401	343	Fibronectin type 3 domain-containing protein [Gene	91.18
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	90.99
KOG4152|consensus	830		90.52
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	90.32
PHA02982	251	hypothetical protein; Provisional	90.02
PRK14081	667	triple tyrosine motif-containing protein; Provisio	89.62
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	89.44
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	89.03
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	89.03
PLN02533	427	probable purple acid phosphatase	88.13
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	87.53
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	87.28
PHA03042	286	CD47-like protein; Provisional	87.25
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	86.89
PHA03282	540	envelope glycoprotein E; Provisional	86.79
COG3401	343	Fibronectin type 3 domain-containing protein [Gene	85.81
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	85.79
KOG4228|consensus	1087		85.23
COG5475	60	Uncharacterized small protein [Function unknown]	82.64
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	82.1
PF02010	440	REJ: REJ domain; InterPro: IPR002859 The REJ (Rece	82.07
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	81.95
PHA03271	490	envelope glycoprotein C; Provisional	81.91
KOG4597|consensus	560		81.08
TIGR00868	863	hCaCC calcium-activated chloride channel protein 1	80.71
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	80.59
PF09240	99	IL6Ra-bind: Interleukin-6 receptor alpha chain, bi	80.52

>KOG4221|consensus

Probab=100.00  E-value=2.3e-53  Score=395.10  Aligned_cols=423  Identities=28%  Similarity=0.474  Sum_probs=338.8

Q ss_pred             CCcccCcccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC------eeEEcceeeeecceeeE
Q psy535            1 MNTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA------KVTFTPTVQYLPFRLQG   74 (460)
Q Consensus         1 ~~~~~~~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~   74 (460)
                      ||++..+.++|+.+..+|.|.|.++++.|.|.|+|.|+++.....+..+.|+|...+      .|...|....+.+|+++
T Consensus       176 kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v  255 (1381)
T KOG4221|consen  176 KNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDV  255 (1381)
T ss_pred             cccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcE
Confidence            355556777799999999999999999999999999999987777888999987322      35667888899999999


Q ss_pred             EEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCce
Q psy535           75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAF  154 (460)
Q Consensus        75 ~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~  154 (460)
                      .|.|.+.+.|.+ +|.|.+||..+.... .++.....+.|.|.+++..|+|.|+|+|.|......++  .+|.|..+|.+
T Consensus       256 ~leCvvs~~p~p-~v~Wlrng~~i~~ds-~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idas--aev~V~a~P~~  331 (1381)
T KOG4221|consen  256 VLECVVSGVPKP-SVKWLRNGEKISVDS-YRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDAS--AEVTVLAPPGF  331 (1381)
T ss_pred             EEEEEecCCCCC-ceEEeeCCeeeeecc-eEEEEecccceEEeccccccCceEEEEecCCCcccccc--eEEEEEcCCCC
Confidence            999999999887 799999999987533 56666667889999999999999999999955554444  45556668999


Q ss_pred             eeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecc-eEEEccccceeceEEEEEEeccccee
Q psy535          155 TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGG-NITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       155 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      ...|... .+..+.++.+.|.+   .|.|.|.+.|++++....+...+++..+ .+.|..+-..|.|.|.|.+.|..|..
T Consensus       332 ~~~p~~l-~A~e~~die~ec~~---~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a  407 (1381)
T KOG4221|consen  332 TKAPTTL-VAHESMDIEFECPV---SGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSA  407 (1381)
T ss_pred             CCCCcce-eeeeccceeEeCCC---CCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccc
Confidence            9999887 56679999999999   7889999999998877777666666433 37777777888888888888877765


Q ss_pred             eeeeEEEEecC---------------------------------------------------------------------
Q psy535          234 VQAAQLVVEGT---------------------------------------------------------------------  244 (460)
Q Consensus       234 ~~~~~l~v~~~---------------------------------------------------------------------  244 (460)
                      .....+.+...                                                                     
T Consensus       408 ~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv  487 (1381)
T KOG4221|consen  408 QAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTV  487 (1381)
T ss_pred             cchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEe
Confidence            55444422110                                                                     


Q ss_pred             --------------------------------CCCCCCcee-eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe
Q psy535          245 --------------------------------QPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW  291 (460)
Q Consensus       245 --------------------------------~p~~p~~~~-~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (460)
                                                      +|.+|..+. .......+.+.|.+|..++.++ ..|.+.|...+.+.|
T Consensus       488 ~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I-~~yk~~ys~~~~~~~  566 (1381)
T KOG4221|consen  488 QNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPI-TGYKLFYSEDDTGKE  566 (1381)
T ss_pred             eecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCc-eEEEEEEEcCCCCce
Confidence                                            121222121 1234567899999988777776 799999988866777


Q ss_pred             eeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCC-CCcceEEEeec-ceEEEEecCCCCC-
Q psy535          292 LPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPG-PPRNVSVTEVN-NGFVISWQPPLER-  368 (460)
Q Consensus       292 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~-~p~~~~~~~~~-~~v~l~W~~~~~~-  368 (460)
                      ..+..   +...++|.+|.+.+.|.|+|+|.|..|.|..|..+.+.+..+.|+ ||.|+++...+ ++|.|+|.+|... 
T Consensus       567 ~~~~~---n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t  643 (1381)
T KOG4221|consen  567 LRVEN---NATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSET  643 (1381)
T ss_pred             EEEec---CccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCccc
Confidence            76654   678999999999999999999999999999999999999999996 66669998776 6999999998654 


Q ss_pred             -CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCC
Q psy535          369 -ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG  447 (460)
Q Consensus       369 -~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G  447 (460)
                       ++.+.+|+|+|+....                      .....|..+.   .+.+.|.+.+|+|++.|.|||.|.|..|
T Consensus       644 ~ng~itgYkIRy~~~~~----------------------~~~~~~t~v~---~n~~~~l~~~Lep~T~Y~vrIsa~t~nG  698 (1381)
T KOG4221|consen  644 QNGQITGYKIRYRKLSR----------------------EDEVNETVVK---GNTTQYLFNGLEPNTQYRVRISAMTVNG  698 (1381)
T ss_pred             ccceEEEEEEEecccCc----------------------ccccceeecc---cchhhhHhhcCCCCceEEEEEEEeccCC
Confidence             7789999999996543                      1222333332   3677888999999999999999999999


Q ss_pred             CCCCCceeEeecC
Q psy535          448 DGMLSNIVVVKTK  460 (460)
Q Consensus       448 ~s~~s~~~~~~T~  460 (460)
                      .|++|+|+.+.|.
T Consensus       699 tGpaS~w~~aeT~  711 (1381)
T KOG4221|consen  699 TGPASEWVSAETP  711 (1381)
T ss_pred             CCCcccceeccCc
Confidence            9999999999884

>KOG3513|consensus

Probab=100.00  E-value=1e-52  Score=392.83  Aligned_cols=413  Identities=26%  Similarity=0.439  Sum_probs=329.1

Q ss_pred             cccceEEEeeCC-eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCC
Q psy535            7 SLETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPT   85 (460)
Q Consensus         7 ~~~~r~~~~~~~-~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~   85 (460)
                      +..+|.+....| .|.|.+++.+|+|.|+|.|.|..|.. .....|.|..+|.+...+.+..+..|+++.|.|.+.|.|.
T Consensus       282 ~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~-~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~  360 (1051)
T KOG3513|consen  282 PPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSA-THSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPN  360 (1051)
T ss_pred             CCCcceeeeccccEEEecccCcCCCeEEEEEEecccccc-eeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCC
Confidence            555666665544 99999999999999999999999964 8899999999999999999999999999999999999988


Q ss_pred             CCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcc-ccc
Q psy535           86 FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAM-YQR  164 (460)
Q Consensus        86 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~-~~~  164 (460)
                      + .|+|++||.++.+..........++.|.|.+++..|+|.|+|.|.|..|...+++.|.|.. .+|.+...+... +.+
T Consensus       361 p-~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a-~~P~f~~~p~~~~~~a  438 (1051)
T KOG3513|consen  361 P-TVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA-SAPVFPLNPVERKVMA  438 (1051)
T ss_pred             C-ceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc-cCCCCCCCccceEEEE
Confidence            7 7999999999986544444556788999999999999999999999999988888877753 346666666543 457


Q ss_pred             CCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-ecceEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535          165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       165 ~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      ..|..+.|.|..   .+.|.|.+.|.+.++.++...|+.+ .+++|.|.+++.+|+|.|+|.|.|.+|.......|.|..
T Consensus       439 ~~g~~v~i~C~~---~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd  515 (1051)
T KOG3513|consen  439 VVGGTVTIDCKP---FASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD  515 (1051)
T ss_pred             EeCCeEEEeecc---CCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEec
Confidence            789999999999   8999999999997776777888887 688999999999999999999999999999999999876


Q ss_pred             CCC--CCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe-----eeeeccCCCCceEEEccCccCccEE
Q psy535          244 TQP--HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-----LPIPVTPPGSTQITINRLTPATTYE  316 (460)
Q Consensus       244 ~~p--~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~l~~~~~~~  316 (460)
                      .+-  .+|.+. ....+..++|.|....+......   +.|++++..-..     ........+...|+|.++...+.|.
T Consensus       516 ~tri~~~P~~~-~v~~g~~v~l~Ce~shD~~ld~~---f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~  591 (1051)
T KOG3513|consen  516 ATRITLAPSNT-DVKVGESVTLTCEASHDPSLDIT---FTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGK  591 (1051)
T ss_pred             CceEEeccchh-hhccCceEEEEeecccCCCcceE---EEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCce
Confidence            321  122222 23456789999987665555443   477776542111     1111111122569999999999999


Q ss_pred             EEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEc--CCeeeeccccC
Q psy535          317 FQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTD--GSWKTLNKGQI  393 (460)
Q Consensus       317 ~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~--~~~~~~~~~~~  393 (460)
                      |.|.|...+........+.++   ++|+||.++.+...+ +++.|+|.+..+++++|..|.|+++..  +.|.....   
T Consensus       592 Y~C~aqT~~Ds~s~~A~l~V~---gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~---  665 (1051)
T KOG3513|consen  592 YTCVAQTALDSASARADLLVR---GPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTT---  665 (1051)
T ss_pred             EEEEEEEeecchhcccceEEe---cCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEeeE---
Confidence            999999876655555556665   458899999999887 599999999999999999999999974  44654432   


Q ss_pred             CCCcccccccceecCceeeeeeccCCCCc---ceEEECCCCcCceEEEEEEEeecCCCCCCCceeE-eec
Q psy535          394 RPEENSYLGEYREQGNKDWLPIPVTPPGS---TQITINRLTPATTYEFQVVGKNELGDGMLSNIVV-VKT  459 (460)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~-~~T  459 (460)
                                              ++...   .+.++.+|.|.+.|+|||.|+|..|.|+||.+.. ++|
T Consensus       666 ------------------------vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT  711 (1051)
T KOG3513|consen  666 ------------------------VPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRT  711 (1051)
T ss_pred             ------------------------CCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceec
Confidence                                    22222   3577889999999999999999999999988754 444

>KOG3513|consensus

Probab=100.00  E-value=3.7e-50  Score=375.74  Aligned_cols=422  Identities=28%  Similarity=0.466  Sum_probs=340.8

Q ss_pred             CcccCcccce---EEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecC-CeeEEcceee--eecceeeEE
Q psy535            2 NTKVGSLETR---VVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP-AKVTFTPTVQ--YLPFRLQGV   75 (460)
Q Consensus         2 ~~~~~~~~~r---~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~--~~~~g~~~~   75 (460)
                      |++.....+|   +++ .+|.|+|++++.+|+|.|+|.|+|..|.. .+.+.|.|... |.|...|...  .+..|.++.
T Consensus       368 Ng~pl~~~~r~~~~~i-~~g~L~is~v~~~dsg~YQC~A~Nk~G~i-~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~  445 (1051)
T KOG3513|consen  368 NGEPLEPAERDPRYKI-DDGTLIISNVQESDSGVYQCIAENKYGTI-YANAELKVLASAPVFPLNPVERKVMAVVGGTVT  445 (1051)
T ss_pred             CCeecCccCCCcceEE-eCCEEEEEecccccCeEEEeeeecccceE-eeeeEEEEEccCCCCCCCccceEEEEEeCCeEE
Confidence            4444444555   888 67799999999999999999999999997 78899999864 8887777555  566789999


Q ss_pred             EEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCcee
Q psy535           76 VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFT  155 (460)
Q Consensus        76 l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~  155 (460)
                      |.|...+.|.+ .++|.|++..+.  +..++.+.++|+|.|.+++.+|+|.|+|.|.|..|...  ....|.|..++.+.
T Consensus       446 i~C~~~asP~p-~~~W~k~~~~~~--~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~--~~~~L~Vkd~tri~  520 (1051)
T KOG3513|consen  446 IDCKPFASPKP-KVSWLKGGEKLL--QSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAE--STGNLIVKDATRIT  520 (1051)
T ss_pred             EeeccCCCCcc-eEEEEcCCcccc--cCceEEECCCCcEEecccCcccCcEEEEEEEcccCccc--eEEEEEEecCceEE
Confidence            99999999987 799999998433  67899999999999999999999999999999999864  45667778899999


Q ss_pred             eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC----CcccEEEecc----eEEEccccceeceEEEEEEe
Q psy535          156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL----PKNRVKIVGG----NITIEGLRRVDFGYYECVVS  227 (460)
Q Consensus       156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~----~~~~~~~~~~----~l~i~~~~~~~~g~y~C~a~  227 (460)
                      ..|... .+..|+.++|.|.+.++ ......+.|.+ ++..+    ..........    .|.|.+++..|+|.|.|++.
T Consensus       521 ~~P~~~-~v~~g~~v~l~Ce~shD-~~ld~~f~W~~-nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aq  597 (1051)
T KOG3513|consen  521 LAPSNT-DVKVGESVTLTCEASHD-PSLDITFTWKK-NGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQ  597 (1051)
T ss_pred             eccchh-hhccCceEEEEeecccC-CCcceEEEEEE-CCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEE
Confidence            988776 78999999999998543 33456889999 44433    2333444333    49999999999999999999


Q ss_pred             cccceeeeeeEEEEecCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCC---ce
Q psy535          228 NEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS---TQ  303 (460)
Q Consensus       228 n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  303 (460)
                      ....+.++...+.|.. +|.||..+.. ......+.|+|.++.+...+ +..|.+.++......|..+.......   .+
T Consensus       598 T~~Ds~s~~A~l~V~g-pPgpP~~v~~~~i~~t~~~lsW~~g~dn~Sp-I~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~s  675 (1051)
T KOG3513|consen  598 TALDSASARADLLVRG-PPGPPPDVHVDDISDTTARLSWSPGSDNNSP-IEKYTIQFRTPFPGKWKAVTTVPGNITGDES  675 (1051)
T ss_pred             EeecchhcccceEEec-CCCCCCceeEeeeccceEEEEeecCCCCCCC-ceEEeEEecCCCCCcceEeeECCCcccCccc
Confidence            8777777778888886 6777776654 56778999999999888776 68999999999888998876333222   35


Q ss_pred             EEEccCccCccEEEEEEEEcCCCCCCCCCcEE-EEccCCCC-CCCcceEEEeec-ceEEEEecCCC--CCCccceEEEEE
Q psy535          304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVV-VKTKGPKP-GPPRNVSVTEVN-NGFVISWQPPL--ERASLIQYYLIK  378 (460)
Q Consensus       304 ~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~-~~~~~~~P-~~p~~~~~~~~~-~~v~l~W~~~~--~~~~~i~~y~i~  378 (460)
                      ..+-+|.|...|+||+.|.|..|.|.+|.+.. ++|.+.+| ..|.++..-..+ +.+.|+|++..  ..+++-.+|+|.
T Consensus       676 a~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vs  755 (1051)
T KOG3513|consen  676 ATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVS  755 (1051)
T ss_pred             eeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEE
Confidence            77889999999999999999999999988754 67888888 489999988776 68999999865  347899999999


Q ss_pred             EEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEEC--CCCcCceEEEEEEEeecCCCCCCCceeE
Q psy535          379 YRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITIN--RLTPATTYEFQVVGKNELGDGMLSNIVV  456 (460)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~L~p~~~Y~~~v~a~n~~G~s~~s~~~~  456 (460)
                      |+..+.                        ...|....+....+..+.+.  ...|++.|+++|.|+|..|+|+.|..+.
T Consensus       756 wr~~g~------------------------~~~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v  811 (1051)
T KOG3513|consen  756 WRPQGA------------------------DKEWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTV  811 (1051)
T ss_pred             EEeCCC------------------------CcccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEE
Confidence            998764                        11455544444444555544  5667999999999999999999999877


Q ss_pred             eec
Q psy535          457 VKT  459 (460)
Q Consensus       457 ~~T  459 (460)
                      +.+
T Consensus       812 ~~S  814 (1051)
T KOG3513|consen  812 GYS  814 (1051)
T ss_pred             EEc
Confidence            643

>KOG4221|consensus

Probab=100.00  E-value=2.2e-43  Score=328.87  Aligned_cols=409  Identities=25%  Similarity=0.450  Sum_probs=313.8

Q ss_pred             cccceEEEeeCCeEEEeecCC-----CCCeeEEEEEEeC-CCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE
Q psy535            7 SLETRVVIKKDGTLVINPVGS-----DDSGLYMCEVSNG-IGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI   80 (460)
Q Consensus         7 ~~~~r~~~~~~~~L~i~~~~~-----~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~   80 (460)
                      ..++|.++++||+|.|.++..     -|+|.|+|.|+-. .|...+..+.|.+...+.|...+....+..|+++.|.|.+
T Consensus        85 ~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~v  164 (1381)
T KOG4221|consen   85 VYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEV  164 (1381)
T ss_pred             hhhhHHhhccCCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEE
Confidence            456889999999999999998     8899999999977 5666788899999889999999999999999999999999


Q ss_pred             ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC------ce
Q psy535           81 KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP------AF  154 (460)
Q Consensus        81 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p------~~  154 (460)
                      .+.+-+ .+.|.++..++.-  ..++.+..+|.|.|.+++..|.|.|+|.|+++.... .+...++.|..-|      .|
T Consensus       165 n~e~~p-~i~w~kn~~pl~~--~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r-~S~~a~ltv~s~~~~~~~~~f  240 (1381)
T KOG4221|consen  165 NAEPVP-TIMWLKNDQPLPL--DSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQR-TSNEAELTVLSDPGALNKLVF  240 (1381)
T ss_pred             cCccCc-eeEEecccccccC--CCcEEEcCCCcEEecccccCCCceEEEEEecCCcCC-ccceeEEEecCCcccccceee
Confidence            996555 7999999998763  348899999999999999999999999999865443 3445555554222      24


Q ss_pred             eeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc--cEEEe-cceEEEccccceeceEEEEEEecccc
Q psy535          155 TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN--RVKIV-GGNITIEGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       155 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~-~~~l~i~~~~~~~~g~y~C~a~n~~g  231 (460)
                      ...|... .+..|+.+.|.|.+   .+.|.|.+.|.+ ++..+...  ++... .+.|.|.+++..|+|.|+|+|.|...
T Consensus       241 l~~p~~~-~v~~g~~v~leCvv---s~~p~p~v~Wlr-ng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D  315 (1381)
T KOG4221|consen  241 LDEPSNA-VVVEGDDVVLECVV---SGVPKPSVKWLR-NGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTND  315 (1381)
T ss_pred             ecCCCcc-ccccCCcEEEEEEe---cCCCCCceEEee-CCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCc
Confidence            4455555 68899999999999   899999999999 55555433  44444 56899999999999999999999554


Q ss_pred             eeeeeeEEEEecCCC--CCCCce---------------------------------------------------------
Q psy535          232 TIVQAAQLVVEGTQP--HAPYNI---------------------------------------------------------  252 (460)
Q Consensus       232 ~~~~~~~l~v~~~~p--~~p~~~---------------------------------------------------------  252 (460)
                      ...+..++.|..+|-  ..|..+                                                         
T Consensus       316 ~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~  395 (1381)
T KOG4221|consen  316 SIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGF  395 (1381)
T ss_pred             ccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchh
Confidence            445555555543210  000000                                                         


Q ss_pred             ----------------------------------------eeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCee
Q psy535          253 ----------------------------------------TGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWL  292 (460)
Q Consensus       253 ----------------------------------------~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (460)
                                                              ........+.++|.++...+.+. ..|.+.|+........
T Consensus       396 yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i-~~~~v~~~~~~~~rer  474 (1381)
T KOG4221|consen  396 YQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNI-STYTVFYKVEGDVRER  474 (1381)
T ss_pred             hhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCc-ceEEEEEecCCchhhh
Confidence                                                    00011235678888766444443 4566656554433222


Q ss_pred             eeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCcc
Q psy535          293 PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASL  371 (460)
Q Consensus       293 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~  371 (460)
                      .......+ ....+.+|.+.+.|.|+|.|.|..|.+..+..+.+.+...   +|..+.....+ .++.+.|++|.-++++
T Consensus       475 ~~~tss~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE---gp~~~~a~ats~~ti~v~WepP~~~n~~  550 (1381)
T KOG4221|consen  475 LQNTSSPG-IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE---GPVQLQAYATSPTTILVTWEPPPFGNGP  550 (1381)
T ss_pred             heeccCCc-eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCC---CCccccccccCcceEEEEecCCCCCCCC
Confidence            23333334 7889999999999999999999999999999999987644   33336666666 5999999999988999


Q ss_pred             ceEEEEEEEEcCC--eeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCC
Q psy535          372 IQYYLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG  449 (460)
Q Consensus       372 i~~y~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s  449 (460)
                      |++|++.|..++.  |..+.                              .+..+++|.||.+++.|.|+|.|+|+.|.|
T Consensus       551 I~~yk~~ys~~~~~~~~~~~------------------------------~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g  600 (1381)
T KOG4221|consen  551 ITGYKLFYSEDDTGKELRVE------------------------------NNATEYTINGLEKYTEYSIRVVAYNSAGSG  600 (1381)
T ss_pred             ceEEEEEEEcCCCCceEEEe------------------------------cCccEEEeecCCCccceEEEEEEecCCCCC
Confidence            9999999997632  22222                              477899999999999999999999999999


Q ss_pred             CCCceeEeec
Q psy535          450 MLSNIVVVKT  459 (460)
Q Consensus       450 ~~s~~~~~~T  459 (460)
                      ..|..+.|+|
T Consensus       601 ~sS~~i~V~T  610 (1381)
T KOG4221|consen  601 VSSADITVRT  610 (1381)
T ss_pred             CCCCceEEEe
Confidence            9999999987

>KOG4222|consensus

Probab=100.00  E-value=8.7e-38  Score=290.11  Aligned_cols=403  Identities=24%  Similarity=0.402  Sum_probs=304.5

Q ss_pred             ccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCC
Q psy535            8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQ   87 (460)
Q Consensus         8 ~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~   87 (460)
                      +..++.+..+|.|.|.+++.+|+|.|.|++.|-.|...+...+|.|+.+|.|...|....+..|..+.+.|.+.|.|.+ 
T Consensus       177 ~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P-  255 (1281)
T KOG4222|consen  177 DVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQP-  255 (1281)
T ss_pred             cceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCC-
Confidence            5677777789999999999999999999999999998888999999999999999999999999999999999998876 


Q ss_pred             eEEEeeCCeecCccccccEEEeec-CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCC
Q psy535           88 YVTWTKDKRLLEPYQTKDIVVMQN-GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKV  166 (460)
Q Consensus        88 ~v~W~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~  166 (460)
                      .+.|.+++..+.   ..+..+..+ .+|.|.+++..|.|.|.|.+.|..|..+.++.++|  +.+|.+...+... .+..
T Consensus       256 ~Vrwkk~~~~~P---~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV--~apP~f~kkp~dq-~v~l  329 (1281)
T KOG4222|consen  256 TVRWKKDDPSLP---RSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTV--QAPPSFGKKPRDQ-KVAL  329 (1281)
T ss_pred             ceeeeccCCCCC---ccceeeeeccccccccccCCCcccceeeeccccccccccccceEE--ecCcccccccCcc-cccc
Confidence            799999777664   345555555 78999999999999999999999999888877666  5599999888876 6888


Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccCC--------cccEEE-ecceEEEccccceeceEEEEEEecccceeeeee
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALP--------KNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~--------~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      |..++|.|..   .+.|.|.+.|.+.+...+-        ..+..+ ..+.|.|.++...|.|.|.|...+..|......
T Consensus       330 g~~vt~pc~~---~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a  406 (1281)
T KOG4222|consen  330 GGTVTFPCET---LGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKA  406 (1281)
T ss_pred             CceEEeeeec---CCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccce
Confidence            9999999999   8999999999997654431        122222 234799999999999999999888777654433


Q ss_pred             EEEEecC-CC-CCCCceeee------eecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccC
Q psy535          238 QLVVEGT-QP-HAPYNITGV------ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRL  309 (460)
Q Consensus       238 ~l~v~~~-~p-~~p~~~~~~------~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  309 (460)
                      .+.+... .- .||..+...      .......+-|.  ..+.+.+.   +.|.+++-................+.+.++
T Consensus       407 ~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~--atg~P~p~---i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl  481 (1281)
T KOG4222|consen  407 YLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCS--ATGAPTPN---ISWLKDGCNVMNPDSRISQQEIGSLRIRDL  481 (1281)
T ss_pred             eEEEEeeeccCCCCceeeecccccccccCcccccChh--hhCCCCCC---chhhhcccccccCCcccceeeeceeeeeee
Confidence            3322111 11 222222211      11223444444  34444433   555555433211112222324467899999


Q ss_pred             ccCccEEEEEEEEcCCCCCCCCCcEEEEccCC------------CCCCCcceEEEeec-ceEEEEecCCCC-CCccceEE
Q psy535          310 TPATTYEFQVVGKNELGDGMLSNIVVVKTKGP------------KPGPPRNVSVTEVN-NGFVISWQPPLE-RASLIQYY  375 (460)
Q Consensus       310 ~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~------------~P~~p~~~~~~~~~-~~v~l~W~~~~~-~~~~i~~y  375 (460)
                      .-.+.|.|.|.|.+..|++.++..+.+.....            .|++|....+..++ ++++|+|.+... +..++.+|
T Consensus       482 ~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~y  561 (1281)
T KOG4222|consen  482 KGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGY  561 (1281)
T ss_pred             ecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchh
Confidence            99999999999999999999998887654422            35667777777777 599999999876 45699999


Q ss_pred             EEEEEEcC---CeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCC
Q psy535          376 LIKYRTDG---SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS  452 (460)
Q Consensus       376 ~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s  452 (460)
                      .|+|....   .|.....                           . ...+.+.|.+|.|+..|.|.|+|.|..|-|.+|
T Consensus       562 iieafs~~~~etw~~ta~---------------------------~-v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps  613 (1281)
T KOG4222|consen  562 IIEAFSPDLGETWQTTAG---------------------------R-VKTTTYAIRGLKPNLSYLFLVRAENEQGISDPS  613 (1281)
T ss_pred             HHHHhhhhhccccccccc---------------------------c-cccceeeecCcCccceeeeeeeccccccccCCc
Confidence            99987532   2433321                           1 356788999999999999999999999988776


Q ss_pred             c
Q psy535          453 N  453 (460)
Q Consensus       453 ~  453 (460)
                      .
T Consensus       614 ~  614 (1281)
T KOG4222|consen  614 T  614 (1281)
T ss_pred             c
Confidence            4

>KOG4222|consensus

Probab=100.00  E-value=3.5e-32  Score=253.16  Aligned_cols=426  Identities=27%  Similarity=0.398  Sum_probs=313.1

Q ss_pred             ccCcccceEEEeeC-CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEec
Q psy535            4 KVGSLETRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA   82 (460)
Q Consensus         4 ~~~~~~~r~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~   82 (460)
                      .-...-.|+++..+ -+|.|..++..|.|.|.|.+.|..|.. .+...|+|+.+|.|..+|....+..|..++|.|.+.+
T Consensus       263 ~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l-~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~g  341 (1281)
T KOG4222|consen  263 DPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGL-EASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLG  341 (1281)
T ss_pred             CCCCCccceeeeeccccccccccCCCcccceeeecccccccc-ccccceEEecCcccccccCccccccCceEEeeeecCC
Confidence            34456688999888 799999999999999999999999986 8889999999999999999999999999999999999


Q ss_pred             CCCCCeEEEeeCCeecC------ccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE---ee-C-C
Q psy535           83 NPTFQYVTWTKDKRLLE------PYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL---VR-K-P  151 (460)
Q Consensus        83 ~~~~~~v~W~~~~~~~~------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~---v~-~-~  151 (460)
                      +|++ .+.|.+.|...-      +..+.+..+...+.|.|.+++..|.|.|.|...+..+.....+.+.+.   .. . +
T Consensus       342 nP~P-avfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPp  420 (1281)
T KOG4222|consen  342 NPPP-AVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPP  420 (1281)
T ss_pred             CCCc-ceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCC
Confidence            9887 699999775421      123455566667789999999999999999988777766555444432   11 3 3


Q ss_pred             CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC-CcccEE-EecceEEEccccceeceEEEEEEecc
Q psy535          152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVK-IVGGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~-~~~~~~-~~~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      |.+...+... ....+..+.|.|.+   .+.|.+.+.|.+++.... ...+.. ...+.+.+..+...|.|.|+|.+.+.
T Consensus       421 p~i~~g~~nQ-tl~v~s~a~l~c~a---tg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~  496 (1281)
T KOG4222|consen  421 PIIEQGPANQ-TLPVGSTASLPCSA---TGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDE  496 (1281)
T ss_pred             ceeeeccccc-ccccCcccccChhh---hCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCc
Confidence            4455556554 67779999999999   899999999999554322 122222 23578999999999999999999999


Q ss_pred             cceeeeeeEEEEecC--------------CCCCCCce-eeeeecceEEEEeecCCCCCCCceeeEEEEEEecC-CCCeee
Q psy535          230 VATIVQAAQLVVEGT--------------QPHAPYNI-TGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG-NKDWLP  293 (460)
Q Consensus       230 ~g~~~~~~~l~v~~~--------------~p~~p~~~-~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  293 (460)
                      .|+...+..+.|...              .|.+|... .......+++|.|.+....+.-++.+|++.+.... ...|..
T Consensus       497 ~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~  576 (1281)
T KOG4222|consen  497 SGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQT  576 (1281)
T ss_pred             ccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccc
Confidence            999888877777431              12222211 13445679999999887766666678888765433 345665


Q ss_pred             eeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEE-EEccCCCCCC-------------CcceEEEe---ec-
Q psy535          294 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV-VKTKGPKPGP-------------PRNVSVTE---VN-  355 (460)
Q Consensus       294 ~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~-~~~~~~~P~~-------------p~~~~~~~---~~-  355 (460)
                      ..... ..+.+.|.+|.+...|.|.|+|.|..|-+.++..-. +++.+..+..             -..++...   .. 
T Consensus       577 ta~~v-~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~a  655 (1281)
T KOG4222|consen  577 TAGRV-KTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNA  655 (1281)
T ss_pred             ccccc-ccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccch
Confidence            54322 667899999999999999999999999776554322 2222111110             01122221   12 


Q ss_pred             ceEEEEecCCCCC-CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCc
Q psy535          356 NGFVISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPAT  434 (460)
Q Consensus       356 ~~v~l~W~~~~~~-~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  434 (460)
                      ++|.+.|...... ...|.+|+|.||..+.                       ....|..+.........+.+.+|.|++
T Consensus       656 sslr~~w~~~kq~~~~~i~g~~I~~r~~~~-----------------------~~a~~s~~~v~~~t~~s~v~~nl~p~t  712 (1281)
T KOG4222|consen  656 SSLRLGWTKDKQHGSQYIQGYRISYRSLGS-----------------------QLAQWSNAGVTVPTPESVVVPNLKPGT  712 (1281)
T ss_pred             hheeeeeeeecccCcccccceEEEeccCcc-----------------------ccccccccceeccCCcceeccccCCCc
Confidence            4799999998765 4489999999998764                       122344455555677889999999999


Q ss_pred             eEEEEEEEeecCCC---CCCCceeEeec
Q psy535          435 TYEFQVVGKNELGD---GMLSNIVVVKT  459 (460)
Q Consensus       435 ~Y~~~v~a~n~~G~---s~~s~~~~~~T  459 (460)
                      .|+|.++.+-..|.   |-+|..+.+.|
T Consensus       713 ~ye~f~~Pf~~~~~s~~g~pS~sk~alt  740 (1281)
T KOG4222|consen  713 NYEFFVRPFFPHGYSIQGAPSNSKTALT  740 (1281)
T ss_pred             cceeeccCccCCCcceecCCcccccccc
Confidence            99999999988653   55666555443

>KOG4194|consensus

Probab=99.96  E-value=1.5e-27  Score=208.77  Aligned_cols=218  Identities=27%  Similarity=0.419  Sum_probs=178.5

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCee
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL   97 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~   97 (460)
                      +.|.+.+|+..|+|.|+|+++|.+|+.+++.+.|+|...|.|...|.+.++..|+.+.|.|.+.|.|.| .|.|.|+|..
T Consensus       574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~P-eIawqkdggt  652 (873)
T KOG4194|consen  574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRP-EIAWQKDGGT  652 (873)
T ss_pred             heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCc-ceeehhcCCC
Confidence            379999999999999999999999999999999999999999999999999999999999999999887 7999998876


Q ss_pred             -cCccccccEEEee-cCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEee
Q psy535           98 -LEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCE  175 (460)
Q Consensus        98 -~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~  175 (460)
                       .......|..+.. +..+.|.|++.+|+|.|+|.|.|..|...+++.++|  .+.|.+.+.-... .+..|+++.|.|.
T Consensus       653 dFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V--~e~p~f~~PL~~~-~V~~get~vlqC~  729 (873)
T KOG4194|consen  653 DFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTV--LETPSFSIPLEDQ-LVVVGETLVLQCL  729 (873)
T ss_pred             CCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEE--ecCCcccccccce-EEEecceEEEEEe
Confidence             4333445555544 456999999999999999999999999877766655  5566666554444 6889999999999


Q ss_pred             eeccCCCCC-CeeEEEcCCCccCCcccEEEe--cceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535          176 AQEAEGTQK-PTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       176 ~~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                      +   .+.|. |.+.|+++++..+-..+....  +.-+.+.+...+|+|.|+|...|..|.-.....+.+.
T Consensus       730 a---~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~  796 (873)
T KOG4194|consen  730 A---EGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVY  796 (873)
T ss_pred             c---CCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEe
Confidence            8   67776 999999977765544444333  3357788888999999999999998876555555443

>KOG4194|consensus

Probab=99.93  E-value=2e-24  Score=189.43  Aligned_cols=264  Identities=20%  Similarity=0.331  Sum_probs=199.0

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCcc---ccccEE-Ee----------ecCeEEEeecC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPY---QTKDIV-VM----------QNGSLLFTRVN  120 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~---~~~~~~-~~----------~~~~l~i~~~~  120 (460)
                      .|++...|.......|..++|+|.+.+. ..+.++.|.++.......   ....+. ..          -.+.|.+.||.
T Consensus       503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt  582 (873)
T KOG4194|consen  503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT  582 (873)
T ss_pred             CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence            4667778888888889999999999763 234479999976632110   000000 00          01359999999


Q ss_pred             CCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-
Q psy535          121 QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-  199 (460)
Q Consensus       121 ~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-  199 (460)
                      ..|+|.|+|.++|.+|+. .+..+.+.|...|++...|.+. ....|+.+.|.|.+   .|.|.|++.|.+.++..++. 
T Consensus       583 ~td~grYQCVvtN~FGSt-ysqk~KltV~~~PsFtktP~dl-tl~tg~mArl~CaA---tG~P~PeIawqkdggtdFPAA  657 (873)
T KOG4194|consen  583 FTDEGRYQCVVTNHFGST-YSQKAKLTVNQAPSFTKTPEDL-TLRTGQMARLECAA---TGHPRPEIAWQKDGGTDFPAA  657 (873)
T ss_pred             cccCceEEEEEecccCcc-hhheeEEEeeccCccccCcccc-eeecccceeeeeec---cCCCCcceeehhcCCCCCchh
Confidence            999999999999999988 5567788888899999999987 88999999999999   89999999999988876653 


Q ss_pred             --ccEEE--ecceEEEccccceeceEEEEEEecccceeeeeeEEEEecC-CCCCCCceeeeeecceEEEEeecCCCCCCC
Q psy535          200 --NRVKI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT-QPHAPYNITGVATEFSVTLEWLPGYSGGPD  274 (460)
Q Consensus       200 --~~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~-~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~  274 (460)
                        .|+.+  .+..+.|.++..+|.|.|+|.|.|..|..+....++|.+. .+..|..-.....+..+.++|.+...+.. 
T Consensus       658 ~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~-  736 (873)
T KOG4194|consen  658 RERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPAD-  736 (873)
T ss_pred             hhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCC-
Confidence              34443  3557899999999999999999999999999999999764 33444433455677889999986433221 


Q ss_pred             ceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCC
Q psy535          275 LKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG  328 (460)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~  328 (460)
                         ..+.|+|+.+...........++..-+.+.+..-.+.|.|.|...|..|.-
T Consensus       737 ---pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~  787 (873)
T KOG4194|consen  737 ---PRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTE  787 (873)
T ss_pred             ---ccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccce
Confidence               237788776543322222334466678888888999999999999999854

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.93  E-value=7.1e-24  Score=185.49  Aligned_cols=210  Identities=20%  Similarity=0.382  Sum_probs=147.0

Q ss_pred             eEEEeeCC-eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec--CCeeEEcceeeeecceeeEEEEEEE-----ec
Q psy535           11 RVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF--PAKVTFTPTVQYLPFRLQGVVQCHI-----KA   82 (460)
Q Consensus        11 r~~~~~~~-~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~-----~~   82 (460)
                      |.....+| .|.|.++..+|+|.|+|.|.|..|.. ...+.|.|..  ++.+...+....+.+|..+.|.|..     .+
T Consensus        74 ~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~-~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~  152 (326)
T PHA02785         74 RIIPIDNGSNMLILNPTQSDSGIYICITKNETYCD-MMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIAS  152 (326)
T ss_pred             eEEEccCCceEEEcccCcccCeEEEEEEECCCcce-EEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccC
Confidence            33333445 59999999999999999999988764 5667777754  3333333344556789999999972     34


Q ss_pred             CCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee--eEEEEEee---CCCceeeC
Q psy535           83 NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS--GQMEVLVR---KPPAFTIK  157 (460)
Q Consensus        83 ~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~--~~~~v~v~---~~p~~~~~  157 (460)
                      .+++ .++|+++.. +   ...++....++.|.|.+++.+|+|.|+|.|.|..|.....  ..+.|.|.   .||.+ ..
T Consensus       153 ~~~~-~i~W~k~~~-~---~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~  226 (326)
T PHA02785        153 NVNA-DIIWSGHRR-L---RNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QL  226 (326)
T ss_pred             CCCc-eEEEccCCc-c---CCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cC
Confidence            4444 799998643 2   2345555556789999999999999999999987765433  23444443   23433 34


Q ss_pred             CCcccccCCCCeEEEEeeeeccCCCCC---CeeEEEcCCCccCCc------ccEEE------------ecceEEEccccc
Q psy535          158 PEAMYQRKVGESVDMHCEAQEAEGTQK---PTITWQRRDGVALPK------NRVKI------------VGGNITIEGLRR  216 (460)
Q Consensus       158 ~~~~~~~~~g~~~~l~C~~~~~~~~p~---~~~~W~~~~~~~~~~------~~~~~------------~~~~l~i~~~~~  216 (460)
                      |... .+..|+.++|.|.+   .+.|.   +.+.|+++ +..+..      .++..            ..+.|.|.++..
T Consensus       227 p~~~-~~~~G~~v~L~C~a---~g~P~~~~~~v~W~kn-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~  301 (326)
T PHA02785        227 PEGV-VTSIGSNLTIACRV---SLRPPTTDADVFWISN-GMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKE  301 (326)
T ss_pred             CCcE-EecCCCcEEEEEEE---ECCCCCCCceEEEEEC-CEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcch
Confidence            5444 56789999999999   56665   48999995 433321      12211            134699999999


Q ss_pred             eeceEEEEEEecccce
Q psy535          217 VDFGYYECVVSNEVAT  232 (460)
Q Consensus       217 ~~~g~y~C~a~n~~g~  232 (460)
                      +|.|.|+|.|.|..|.
T Consensus       302 ~D~G~Y~C~A~n~~~~  317 (326)
T PHA02785        302 EDATTFTCMAFTIPSI  317 (326)
T ss_pred             hcCeeeEEEEEeccCc
Confidence            9999999999998754

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.91  E-value=1.7e-22  Score=176.83  Aligned_cols=248  Identities=18%  Similarity=0.248  Sum_probs=159.5

Q ss_pred             eecceeeEEEEEEE-----ecCCCCCeEEEeeCCeecCccccccEEEeecC-eEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535           67 YLPFRLQGVVQCHI-----KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG-SLLFTRVNQNHQGRYTCTPYNAHGTQGS  140 (460)
Q Consensus        67 ~~~~g~~~~l~C~~-----~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~d~G~y~C~~~~~~g~~~~  140 (460)
                      ...+|+.+.|.|.+     .|.|.+ .++|+|+|...     .+.....++ .|.|.++..+|+|.|+|.+.|..|....
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~-~i~W~K~g~~~-----~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~  110 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNIL-DILWEKRGADN-----DRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMM  110 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCc-eEEEEECCCcc-----ceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEE
Confidence            34569999999997     566654 89999987532     122223334 4889999999999999999999887666


Q ss_pred             eeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeec--cCCCCCCeeEEEcCCCccCCcccEEEe-cceEEEccccce
Q psy535          141 SGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQE--AEGTQKPTITWQRRDGVALPKNRVKIV-GGNITIEGLRRV  217 (460)
Q Consensus       141 ~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~l~i~~~~~~  217 (460)
                      +..++|....++.+...+... .+..|..+.+.|....  ..+.|.+.+.|++ +. .+...+.... ++.|.|.+++..
T Consensus       111 s~~L~V~~~~~~~~~~~~~~~-~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k-~~-~~~~~r~~~~~~~~L~i~~v~~~  187 (326)
T PHA02785        111 SLNLTIVSVSESNIDLISYPQ-IVNERSTGEMVCPNINAFIASNVNADIIWSG-HR-RLRNKRLKQRTPGIITIEDVRKN  187 (326)
T ss_pred             EEEEEEEecCCCccceeeccc-eecccCcEEEECCChhhcccCCCCceEEEcc-CC-ccCCcceEecCCCeEEEeecChh
Confidence            666666555444333222222 4668999999997210  1356889999987 33 3334444433 568999999999


Q ss_pred             eceEEEEEEecccceeeee----eEEEEecC--CC--CCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCC
Q psy535          218 DFGYYECVVSNEVATIVQA----AQLVVEGT--QP--HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK  289 (460)
Q Consensus       218 ~~g~y~C~a~n~~g~~~~~----~~l~v~~~--~p--~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~  289 (460)
                      |.|.|+|.+.|..|.....    +.+.|..+  +|  ..|.... ...+..++|.|...  +.+.+...-+.|++++...
T Consensus       188 d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~-~~~G~~v~L~C~a~--g~P~~~~~~v~W~kng~~i  264 (326)
T PHA02785        188 DAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVV-TSIGSNLTIACRVS--LRPPTTDADVFWISNGMYY  264 (326)
T ss_pred             hCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEE-ecCCCcEEEEEEEE--CCCCCCCceEEEEECCEEC
Confidence            9999999999988765432    33444321  12  1122222 23456799999853  3332212235677654311


Q ss_pred             Ce------eeeeccC---------CCCceEEEccCccCccEEEEEEEEcCCC
Q psy535          290 DW------LPIPVTP---------PGSTQITINRLTPATTYEFQVVGKNELG  326 (460)
Q Consensus       290 ~~------~~~~~~~---------~~~~~~~i~~l~~~~~~~~~~~a~n~~G  326 (460)
                      ..      .......         .....|.|.++...|.|.|.|.|.|..|
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~  316 (326)
T PHA02785        265 EEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPS  316 (326)
T ss_pred             CCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccC
Confidence            00      0111000         0134699999999999999999999885

>KOG0196|consensus

Probab=99.79  E-value=1.5e-17  Score=151.45  Aligned_cols=214  Identities=24%  Similarity=0.317  Sum_probs=153.8

Q ss_pred             eEEEEEEecccceeeeeeEEEEecCCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCC------eee
Q psy535          220 GYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD------WLP  293 (460)
Q Consensus       220 g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  293 (460)
                      |.-.|...+.+-.......-.-.-.||.+|.++.....+.++.|.|.+|.+.++..-..|-+-.+.-....      ...
T Consensus       306 ga~~C~C~~gyyRA~~Dp~~mpCT~PPSaP~nlis~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~  385 (996)
T KOG0196|consen  306 GATSCTCENGYYRADSDPPSMPCTRPPSAPRNLISNVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDN  385 (996)
T ss_pred             CCCcccccCCcccCCCCCCCCCCCCCCCccceeeeecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCC
Confidence            44456555544332222111122358899999998899999999999998877765555655444322110      001


Q ss_pred             ee----ccCCCCceEEEccCccCccEEEEEEEEcCCCCC----CCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecC
Q psy535          294 IP----VTPPGSTQITINRLTPATTYEFQVVGKNELGDG----MLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQP  364 (460)
Q Consensus       294 ~~----~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~----~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~  364 (460)
                      +.    ...-......+.+|.+.+.|.|.+.|.|.+-.-    .....+.+++....|.++..++..... ++++|+|..
T Consensus       386 V~f~P~q~gLt~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~  465 (996)
T KOG0196|consen  386 VRFTPRQRGLTETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSE  465 (996)
T ss_pred             ceECCCCCCcccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCC
Confidence            11    112245679999999999999999999986421    223457778887888999999988877 699999999


Q ss_pred             CCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEee
Q psy535          365 PLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN  444 (460)
Q Consensus       365 ~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  444 (460)
                      |...++.|..|+|+|.....           .+.+|....               ...+..+|.+|.|++.|.|+|+|+.
T Consensus       466 p~~png~ildYEvky~ek~~-----------~e~~~~~~~---------------t~~~~~ti~gL~p~t~YvfqVRarT  519 (996)
T KOG0196|consen  466 PDQPNGVILDYEVKYYEKDE-----------DERSYSTLK---------------TKTTTATITGLKPGTVYVFQVRART  519 (996)
T ss_pred             CCCCCCcceeEEEEEeeccc-----------cccceeEEe---------------cccceEEeeccCCCcEEEEEEEEec
Confidence            99999999999999997642           111121111               3567889999999999999999999


Q ss_pred             cCCCCCCCceeEeec
Q psy535          445 ELGDGMLSNIVVVKT  459 (460)
Q Consensus       445 ~~G~s~~s~~~~~~T  459 (460)
                      .+|.|++|..+.|.|
T Consensus       520 ~aG~G~~S~~~~fqT  534 (996)
T KOG0196|consen  520 AAGYGPYSGKHEFQT  534 (996)
T ss_pred             ccCCCCCCCceeeee
Confidence            999999999999987

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.78  E-value=1.3e-17  Score=136.67  Aligned_cols=158  Identities=20%  Similarity=0.302  Sum_probs=108.9

Q ss_pred             eeeeecceeeEEEEEEEecCCC----------CCeEEEeeCCeecCc-cccc---------cEEEeecCeEEEeecCCCC
Q psy535           64 TVQYLPFRLQGVVQCHIKANPT----------FQYVTWTKDKRLLEP-YQTK---------DIVVMQNGSLLFTRVNQNH  123 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~----------~~~v~W~~~~~~~~~-~~~~---------~~~~~~~~~l~i~~~~~~d  123 (460)
                      ....+.+|+++.|.|.+.+.++          ...|.|+|++...-. ....         ......++.|.|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            3456778999999999876442          236999998764210 0001         1111234689999999999


Q ss_pred             CeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeecc--CCCCCCeeEEEcCCCccCCccc
Q psy535          124 QGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEA--EGTQKPTITWQRRDGVALPKNR  201 (460)
Q Consensus       124 ~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~p~~~~~W~~~~~~~~~~~~  201 (460)
                      +|.|+|.|.|..+....  .+.|.|..++      ... .+..|+.+.|.|.+...  .+.|.|.+.|++++..+....+
T Consensus       110 sG~Y~C~a~N~~~~~~~--~i~L~V~~~~------~~~-~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r  180 (227)
T PHA02826        110 EGIYICTISSGNICEES--TIRLTFDSGT------INY-QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDR  180 (227)
T ss_pred             CEEEEEEEEECCcceEE--EEEEEEecCC------ccc-eEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCC
Confidence            99999999997766544  4455553322      112 46789999999997311  1356789999995554444445


Q ss_pred             EEEe--cceEEEccccceeceEEEEEEeccc
Q psy535          202 VKIV--GGNITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       202 ~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      +...  ++.|.|.++..+|+|.|+|.|....
T Consensus       181 ~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        181 IQLRNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             EEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            5543  3579999999999999999998754

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.75  E-value=2.3e-17  Score=135.18  Aligned_cols=112  Identities=19%  Similarity=0.261  Sum_probs=85.4

Q ss_pred             CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCC----CCCeEEEe
Q psy535           17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANP----TFQYVTWT   92 (460)
Q Consensus        17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~----~~~~v~W~   92 (460)
                      +++|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|..++      ....+.+|+++.|.|.+.+.+    +.++|+|+
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~-~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~Wy  169 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNICE-ESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWY  169 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcce-EEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEE
Confidence            5699999999999999999999977653 566777774322      234567899999999986432    23589999


Q ss_pred             eCCeecCccccccEEEe-ecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           93 KDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      |++.++...  .++... .+++|.|.+++.+|+|.|+|.|......
T Consensus       170 Kng~~l~~~--~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g  213 (227)
T PHA02826        170 KNGNIVLYT--DRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNS  213 (227)
T ss_pred             ECCEECCCC--CCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeECC
Confidence            999998632  344333 3457999999999999999999875433

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.65  E-value=1.4e-15  Score=105.73  Aligned_cols=87  Identities=20%  Similarity=0.347  Sum_probs=71.7

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      ||.+...+.+..+.+|+.+.|.|.+.|.|.| .++|+|++.++...  .++ ...++.|.|.++..+|+|.|+|.|.|..
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P-~v~W~k~~~~~~~~--~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   76 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVP-VIRWRKILEPMPAT--AEI-SMSGAVLKIFNIQPEDEGTYECEAENIK   76 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCC-EEEEEECCcCCCCC--CEE-ecCCCEEEECcCChhhCEEEEEEEEcCC
Confidence            5778888888999999999999999999877 79999999877532  222 2345689999999999999999999999


Q ss_pred             CCcceeeEEEE
Q psy535          136 GTQGSSGQMEV  146 (460)
Q Consensus       136 g~~~~~~~~~v  146 (460)
                      |....++.+.|
T Consensus        77 G~~~~~~~l~V   87 (88)
T cd05851          77 GKDKHQARVYV   87 (88)
T ss_pred             CceEEEEEEEE
Confidence            99766655544

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.63  E-value=4.1e-15  Score=105.49  Aligned_cols=91  Identities=19%  Similarity=0.272  Sum_probs=73.1

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe---ecCeEEEeecCCCCCeEEEEEEEc
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM---QNGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      |.|...|....+..|+.+.|.|.+.|.|++ .+.|+|+|..+...  .++.+.   ..+.|.|.++..+|+|.|+|.|.|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p-~v~W~kdg~~l~~~--~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N   77 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPI-TCTWMKFRKQIQEG--EGIKIENTENSSKLTITEGQQEHCGCYTLEVEN   77 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCC-ceEEEECCEEecCC--CcEEEEecCCeeEEEECCCChhhCEEEEEEEEc
Confidence            456778888999999999999999998876 79999999998642  333333   245799999999999999999999


Q ss_pred             CCCCcceeeEEEEEeeCCC
Q psy535          134 AHGTQGSSGQMEVLVRKPP  152 (460)
Q Consensus       134 ~~g~~~~~~~~~v~v~~~p  152 (460)
                      ..|...++  +.|.|..+|
T Consensus        78 ~~G~~~~~--~~l~V~~~P   94 (98)
T cd05762          78 KLGSRQAQ--VNLTVVDKP   94 (98)
T ss_pred             CCCceeEE--EEEEEecCC
Confidence            99997665  445555555

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.62  E-value=6.7e-15  Score=104.30  Aligned_cols=82  Identities=21%  Similarity=0.316  Sum_probs=62.0

Q ss_pred             eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee-------cCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-------NGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      ....+.+|+++.|.|.+.|+++++.+.|+|||.++.... .......       .+.|.|.++..+|+|.|+|.|.|..|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKL-TEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCc-ceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            356678899999999999944445899999999987422 2121211       25799999999999999999999999


Q ss_pred             CcceeeEEEE
Q psy535          137 TQGSSGQMEV  146 (460)
Q Consensus       137 ~~~~~~~~~v  146 (460)
                      .......+.|
T Consensus        90 ~~~~t~~L~V   99 (101)
T cd04975          90 SKSLTFELYV   99 (101)
T ss_pred             cEEEEEEEEE
Confidence            8655544444

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.61  E-value=3.8e-15  Score=99.01  Aligned_cols=72  Identities=28%  Similarity=0.530  Sum_probs=62.0

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      |+++.|.|.+.|.|.+ .|+|+|++..+.  ...++.+..+++|.|.+++.+|+|.|+|.|.|..|....++.++
T Consensus         1 G~~~~l~C~~~g~P~p-~v~W~k~~~~l~--~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKAAPKP-KFSWSKGTELLV--NNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             CCeEEEEEecceeCCC-EEEEEeCCEecc--cCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence            5789999999998876 899999998875  34577777788999999999999999999999999987766654

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.60  E-value=2.9e-14  Score=109.21  Aligned_cols=116  Identities=21%  Similarity=0.291  Sum_probs=84.6

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCC-CCeEEEeeCCee
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKDKRL   97 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~   97 (460)
                      +|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|..+|.+.+.+.......|+.++|.|.+.+..+ ...|+|++++..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            79999999999999999999877764 7888999999999888776555557888999999999644 358999998864


Q ss_pred             cCc-------cccccEEEeecC------eEEEeecCCCCCeEEEEEEEcCC
Q psy535           98 LEP-------YQTKDIVVMQNG------SLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        98 ~~~-------~~~~~~~~~~~~------~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      ...       ..........++      .|.|......+.+.|+|.+.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            211       001112222333      35555444456779999998654

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.60  E-value=6.4e-15  Score=99.07  Aligned_cols=73  Identities=26%  Similarity=0.454  Sum_probs=61.1

Q ss_pred             ceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        70 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      +|+++.|.|.+.|.|.| .++|+|++..+..  ..+.....++.|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus         1 eG~~v~l~C~~~g~P~p-~i~W~k~g~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   73 (74)
T cd05745           1 EGQTVDFLCEAQGYPQP-VIAWTKGGSQLSV--DRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT   73 (74)
T ss_pred             CCCeEEEEeECCEecCC-EEEEEECCEECCC--CCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence            58899999999999877 7999999998863  3445556678999999999999999999999999876655443

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.58  E-value=1.9e-14  Score=97.39  Aligned_cols=75  Identities=21%  Similarity=0.418  Sum_probs=60.8

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV  146 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v  146 (460)
                      |+++.|.|.+.|.|.| .++|+|+|.++............++.|.|.+++.+|+|.|+|.|.|..|.....+.+.|
T Consensus         1 G~~v~l~C~~~G~P~p-~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTP-NITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCC-eEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            6789999999999876 79999999988653333233456778999999999999999999999998766655544

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.58  E-value=2.5e-14  Score=100.58  Aligned_cols=86  Identities=19%  Similarity=0.391  Sum_probs=64.3

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEeec----CeEEEeecCCCCCeEEEEEEEcC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQN----GSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      .+.|....+.+|+++.|.|.+.|.|.++.++|++ ++..+... ..++.+..+    ++|.|.+++.+|+|.|+|.|.|.
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~-~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   82 (96)
T cd05865           4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPN-QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE   82 (96)
T ss_pred             EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcccc-CCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence            4567777788999999999999998655899998 77666431 234333322    57999999999999999999998


Q ss_pred             C-CCcceeeEEEEEe
Q psy535          135 H-GTQGSSGQMEVLV  148 (460)
Q Consensus       135 ~-g~~~~~~~~~v~v  148 (460)
                      . |..++  .+.|.|
T Consensus        83 ~~g~~~~--s~~l~v   95 (96)
T cd05865          83 DEGESEA--TVNVKI   95 (96)
T ss_pred             CCCcEEE--EEEEEE
Confidence            6 55444  444443

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.56  E-value=5.1e-14  Score=98.50  Aligned_cols=87  Identities=20%  Similarity=0.396  Sum_probs=69.5

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      |+.+...|....+.+|+.+.|.|.+.|.|.+ .++|+|++..+...  .. ....++.|.|.+++.+|+|.|+|.|.|..
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~--~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   76 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVP-QIKWRKVDGSMPSS--AE-ISMSGAVLKIPNIQFEDEGTYECEAENIK   76 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCC-EEEEEECCCcCCCc--cE-EEEeCCEEEECCCCcccCEEEEEEEEECC
Confidence            3455667788888899999999999998876 79999988766432  12 22466789999999999999999999999


Q ss_pred             CCcceeeEEEE
Q psy535          136 GTQGSSGQMEV  146 (460)
Q Consensus       136 g~~~~~~~~~v  146 (460)
                      |....+..+.|
T Consensus        77 G~~~~~~~l~V   87 (88)
T cd04968          77 GKDTHQGRIYV   87 (88)
T ss_pred             CcEEEEEEEEE
Confidence            98766655544

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.56  E-value=2.8e-14  Score=96.17  Aligned_cols=75  Identities=19%  Similarity=0.378  Sum_probs=60.6

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV  146 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v  146 (460)
                      |+++.|.|.+.|.|.| .|+|+|+|.++............++.|.|.+++..|+|.|+|.|.|..|...+++.+.|
T Consensus         1 g~~~~l~C~a~G~P~P-~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKP-SISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCC-eEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            5789999999999876 79999999988643222333345568999999999999999999999999877766654

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.55  E-value=3.6e-14  Score=94.58  Aligned_cols=70  Identities=26%  Similarity=0.529  Sum_probs=56.4

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec--C--eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN--G--SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~--~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      +.|.|.+.|.|.| .|.|+|++..+... ..++.+..+  +  +|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus         1 v~l~C~v~G~P~P-~i~W~k~~~~i~~~-~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05892           1 VKLECQISAIPPP-KIFWKRNNEMVQYN-TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD   74 (75)
T ss_pred             CEEEEEEEecCCC-eEEEEECCEECcCC-CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence            5799999999887 79999999988642 235544433  2  699999999999999999999999876666554

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.55  E-value=6.3e-14  Score=98.79  Aligned_cols=85  Identities=18%  Similarity=0.359  Sum_probs=69.9

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee---cCeEEEeecCCCCCeEEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~  131 (460)
                      .||.+...|....+.+|+++.|.|.+.|.|.+ .+.|+|+|..+...  .++.+..   .+.|.|.++..+|+|.|+|.|
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p-~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   78 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAP-TVTWMREGQIIVSS--QRHQITSTEYKSTFEISKVQMSDEGNYTVVV   78 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCC-EEEEEECCEECCCC--CcEEEEEcCCeeEEEECCCCcccCEeEEEEE
Confidence            36788888989999999999999999999876 79999999887632  3333333   247999999999999999999


Q ss_pred             EcCCCCcceee
Q psy535          132 YNAHGTQGSSG  142 (460)
Q Consensus       132 ~~~~g~~~~~~  142 (460)
                      .|..|....+.
T Consensus        79 ~N~~G~~~~~~   89 (92)
T cd05747          79 ENSEGKQEAQF   89 (92)
T ss_pred             EcCCCCEeEEE
Confidence            99999865443

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.55  E-value=4.7e-14  Score=97.63  Aligned_cols=83  Identities=22%  Similarity=0.313  Sum_probs=67.9

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      |...|....+.+|+++.|.|.+.|.|.+ .+.|+|++.++..  ..++. ..++.|.|.++..+|+|.|+|.|.|..|..
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p-~v~W~k~g~~~~~--~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~   77 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRP-AYRWLKNGQPLAS--ENRIE-VEAGDLRITKLSLSDSGMYQCVAENKHGTI   77 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCC-EEEEEECCEECCC--CCeEE-EeCCEEEEeeCCHHHCEEEEEEEECCCCeE
Confidence            3456777889999999999999999876 7999999998853  23333 456789999999999999999999999986


Q ss_pred             ceeeEEE
Q psy535          139 GSSGQME  145 (460)
Q Consensus       139 ~~~~~~~  145 (460)
                      ..+..+.
T Consensus        78 ~~~~~l~   84 (85)
T cd05728          78 YASAELA   84 (85)
T ss_pred             EEEEEEE
Confidence            5555443

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.54  E-value=6e-14  Score=99.80  Aligned_cols=82  Identities=20%  Similarity=0.313  Sum_probs=64.7

Q ss_pred             eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee-cCeEEEeecCCCCCeEEEEEEEcCCCCcceee
Q psy535           64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG  142 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~  142 (460)
                      ....+..|+++.|.|.+.|.|.+ .+.|+++|..+... ..++.... .+.|.|.++..+|+|.|+|.|.|..|....+.
T Consensus        11 ~~~~~~~G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   88 (95)
T cd05730          11 VNATANLGQSVTLACDADGFPEP-TMTWTKDGEPIESG-EEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEI   88 (95)
T ss_pred             cceEEeCCCCEEEEEeccEeCCC-EEEEEECCEECcCC-CCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence            34467889999999999998876 79999999988643 23333333 34699999999999999999999999876666


Q ss_pred             EEEEE
Q psy535          143 QMEVL  147 (460)
Q Consensus       143 ~~~v~  147 (460)
                      .+.|.
T Consensus        89 ~L~V~   93 (95)
T cd05730          89 HLKVF   93 (95)
T ss_pred             EEEEE
Confidence            65554

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.54  E-value=6.8e-14  Score=93.05  Aligned_cols=70  Identities=21%  Similarity=0.460  Sum_probs=58.0

Q ss_pred             eEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           73 QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        73 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      ++.|.|.+.|.|.| .++|+|++..+.+  ..++....++.|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus         1 ~v~l~C~~~G~P~p-~v~W~k~g~~~~~--~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   70 (71)
T cd05723           1 DVIFECEVTGKPTP-TVKWVKNGDMVIP--SDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI   70 (71)
T ss_pred             CEEEEEEEEEeCCC-EEEEEECCeECCC--CCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence            47899999999876 7999999998864  3445556677899999999999999999999999876655443

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.54  E-value=3e-14  Score=92.06  Aligned_cols=67  Identities=22%  Similarity=0.319  Sum_probs=55.8

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      +.|.|.+.|.|.| .++|+|||.++...       ...+.|.|.++..+|+|.|+|.|.|..|....+..++|.|
T Consensus         1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~~-------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~v   67 (67)
T cd05863           1 VKLPVKVAAYPPP-EFQWYKDGKLISGK-------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELIV   67 (67)
T ss_pred             CEEEEEEEEeCCC-EEEEEECCEECccc-------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEEC
Confidence            4799999999887 79999999998521       1345799999999999999999999999876776666643

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.53  E-value=7.7e-14  Score=94.39  Aligned_cols=75  Identities=24%  Similarity=0.378  Sum_probs=58.4

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR  149 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~  149 (460)
                      ++|.|.+.|.|.| .++|+|+|.++.............+.|.|.++..+|+|.|+|.|.|..|....+..++|.|.
T Consensus         1 v~L~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRP-TYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCC-cEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            5799999999876 79999999988643222222233458999999999999999999999998766667777653

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.53  E-value=8.3e-14  Score=98.11  Aligned_cols=81  Identities=21%  Similarity=0.274  Sum_probs=62.9

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec--CeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN--GSLLFTRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                      .|....+.+|+++.|.|.+.|.|.| .+.|+|++.++......++.....  ..|.|.++..+|+|.|+|.|.|..|...
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDP-EVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGET   85 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCC-eEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcce
Confidence            4556778899999999999999876 799999999986432222222212  3699999999999999999999999865


Q ss_pred             eeeE
Q psy535          140 SSGQ  143 (460)
Q Consensus       140 ~~~~  143 (460)
                      ....
T Consensus        86 ~~~~   89 (92)
T cd05737          86 VDVT   89 (92)
T ss_pred             EEEE
Confidence            5433

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.53  E-value=1.2e-13  Score=96.00  Aligned_cols=87  Identities=23%  Similarity=0.373  Sum_probs=72.2

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEeccc
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      ||.+...+... .+..|+.+.|.|.+   .|.|.|.+.|++++.......++...+..|.|.++..+|.|.|+|.|.|..
T Consensus         1 ~p~i~~~~~~~-~~~~G~~v~l~C~~---~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   76 (88)
T cd05851           1 PADINVKFKDT-YALKGQNVTLECFA---LGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIK   76 (88)
T ss_pred             CCceEEccccE-EEeCCCcEEEEEEe---cccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCC
Confidence            46677777766 68899999999999   899999999999665443444455556789999999999999999999999


Q ss_pred             ceeeeeeEEEE
Q psy535          231 ATIVQAAQLVV  241 (460)
Q Consensus       231 g~~~~~~~l~v  241 (460)
                      |.......|.|
T Consensus        77 G~~~~~~~l~V   87 (88)
T cd05851          77 GKDKHQARVYV   87 (88)
T ss_pred             CceEEEEEEEE
Confidence            99888887765

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.53  E-value=5.9e-14  Score=93.78  Aligned_cols=70  Identities=20%  Similarity=0.434  Sum_probs=56.9

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC----eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG----SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      +.|.|.+.|.|.| .|+|+|++..+.. ...++....++    .|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus         1 v~l~C~v~G~P~P-~v~W~k~~~~l~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05893           1 VRLECRVSGVPHP-QIFWKKENESLTH-NTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD   74 (75)
T ss_pred             CEEEEEEeEecCC-EEEEEECCEECCC-CCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence            5799999999887 8999999998864 23455554443    599999999999999999999999987666554

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.53  E-value=5.7e-14  Score=92.12  Aligned_cols=70  Identities=17%  Similarity=0.235  Sum_probs=58.1

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      +.|.|.+.|.|.| .++|+|+|.++...  .+  ...+..|.|.++..+|+|.|+|.|.|..|..+.+.+++|.|
T Consensus         1 ~~~~c~v~G~P~P-~v~W~k~g~~l~~~--~~--~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~v   70 (70)
T cd05864           1 VKIPVKYYGYPPP-EVKWYKNGQLIVLN--HT--FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLVV   70 (70)
T ss_pred             CEEEeEEEEeCCC-EEEEEECCEECCCC--CE--EccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEEC
Confidence            4689999999887 79999999998642  22  23455799999999999999999999999888887877754

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.52  E-value=1.2e-13  Score=98.09  Aligned_cols=81  Identities=19%  Similarity=0.289  Sum_probs=62.9

Q ss_pred             eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe--------ecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--------QNGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      ...+..|+.+.|.|.+.|.|+| .+.|+|+|.++..... .+...        ..++|.|.++..+|+|.|+|.|.|..|
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P-~v~W~kdg~~l~~~~~-~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g   89 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPP-QIRWLKDNRTLIENLT-EITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA   89 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCC-ceEEEECCEECcCCcc-eEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence            4556778999999999999887 7999999999864221 11111        125799999999999999999999998


Q ss_pred             CcceeeEEEEE
Q psy535          137 TQGSSGQMEVL  147 (460)
Q Consensus       137 ~~~~~~~~~v~  147 (460)
                      ....+..+.|.
T Consensus        90 ~~~~t~~l~V~  100 (101)
T cd05859          90 VKSYTFALQIQ  100 (101)
T ss_pred             eEEEEEEEEEE
Confidence            87666555553

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.52  E-value=8.8e-14  Score=93.29  Aligned_cols=72  Identities=29%  Similarity=0.575  Sum_probs=60.4

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      |+++.|.|.+.|.|.+ .++|+|++..+..  ..++....++.|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus         1 G~~v~L~C~~~g~P~p-~v~W~k~~~~~~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKPKAAPKP-TISWSKGTELLTN--SSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS   72 (73)
T ss_pred             CCeEEEEEeeeEcCCC-EEEEEECCEEccc--CCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence            5789999999998876 8999999998763  3456666778899999999999999999999999876655543

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.52  E-value=2.9e-13  Score=94.10  Aligned_cols=84  Identities=17%  Similarity=0.354  Sum_probs=65.9

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      .++|....+.+|+++.|.|.+.|.|.  .++|++ ++.++..  ..++....++   .|.|.++..+|+|.|+|.|.|..
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~--~v~W~k~~g~~~~~--~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~   79 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIVS--SQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAK   79 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC--eEEEEeCCCeEecC--CCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCC
Confidence            45677778899999999999999875  699998 4666643  3455555555   79999999999999999999999


Q ss_pred             CCcceeeEEEEEe
Q psy535          136 GTQGSSGQMEVLV  148 (460)
Q Consensus       136 g~~~~~~~~~v~v  148 (460)
                      |... ...+.|.+
T Consensus        80 G~~~-~~~i~l~~   91 (92)
T cd05866          80 GQTQ-EATVVLEI   91 (92)
T ss_pred             CcEE-EEEEEEEE
Confidence            8763 55555543

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.52  E-value=1.9e-13  Score=97.07  Aligned_cols=87  Identities=26%  Similarity=0.361  Sum_probs=68.3

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeec-----CCCCCeEEEEEEEc
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV-----NQNHQGRYTCTPYN  133 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~y~C~~~~  133 (460)
                      |...|....+.+|+++.|.|.+.+.|.+ .++|+|+|..+......+.....++.|.|.++     ...|+|.|+|.|.|
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N   80 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPP-KIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN   80 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCC-EEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence            3456777778889999999999998865 89999999998754444455666777888776     58999999999999


Q ss_pred             C-CCCcceeeEEEEE
Q psy535          134 A-HGTQGSSGQMEVL  147 (460)
Q Consensus       134 ~-~g~~~~~~~~~v~  147 (460)
                      . .|.. .+..+.|.
T Consensus        81 ~~~G~~-~s~~~~l~   94 (95)
T cd05722          81 DSLGSI-VSRTARLT   94 (95)
T ss_pred             CccCcE-EEeeeEEe
Confidence            9 8876 35555554

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.51  E-value=3.7e-13  Score=94.92  Aligned_cols=81  Identities=17%  Similarity=0.310  Sum_probs=63.6

Q ss_pred             CeeEEcceeeeecce---eeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecC-CCCCeEEEEEEE
Q psy535           57 AKVTFTPTVQYLPFR---LQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN-QNHQGRYTCTPY  132 (460)
Q Consensus        57 p~~~~~~~~~~~~~g---~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~  132 (460)
                      |.|...|....+.+|   ++++|.|.+.|.|.+ .++|+++|..+......++. ..++.|.|.++. ..|+|.|+|.|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p-~i~W~~~g~~l~~~~~~~~~-~~~g~L~I~~~~~~~D~G~Y~C~A~   79 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPA-TYRWKMNGTEIKFAPESRYT-LVAGNLVINNPQKARDAGSYQCLAI   79 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCC-EEEEEECCEECccCCCceEE-EECCeEEEccCCccCcCEEEEEEEE
Confidence            456667777776665   579999999999876 89999999998643333433 456789998865 599999999999


Q ss_pred             cCCCCcc
Q psy535          133 NAHGTQG  139 (460)
Q Consensus       133 ~~~g~~~  139 (460)
                      |..|...
T Consensus        80 N~~G~~~   86 (94)
T cd05850          80 NRCGTVV   86 (94)
T ss_pred             cCcCcEE
Confidence            9999773

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.51  E-value=2.6e-13  Score=96.20  Aligned_cols=93  Identities=29%  Similarity=0.459  Sum_probs=74.2

Q ss_pred             CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cceEEEccccceeceEEEEEEe
Q psy535          152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVS  227 (460)
Q Consensus       152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~  227 (460)
                      |.|...+... .+..|+.+.|.|.+   .|.|.+.+.|++++..+....++...    ...|.|.++...|+|.|+|.|.
T Consensus         1 p~~~~~p~~~-~v~~G~~v~l~C~~---~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~   76 (98)
T cd05762           1 PQIIQFPEDM-KVRAGESVELFCKV---TGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVE   76 (98)
T ss_pred             CceEECCcCE-EEECCCEEEEEEEE---cccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEE
Confidence            3445556555 68999999999999   89999999999955444334455443    3579999999999999999999


Q ss_pred             cccceeeeeeEEEEecCCCCCC
Q psy535          228 NEVATIVQAAQLVVEGTQPHAP  249 (460)
Q Consensus       228 n~~g~~~~~~~l~v~~~~p~~p  249 (460)
                      |..|....++.|.|.+. |.+|
T Consensus        77 N~~G~~~~~~~l~V~~~-P~pP   97 (98)
T cd05762          77 NKLGSRQAQVNLTVVDK-PDPP   97 (98)
T ss_pred             cCCCceeEEEEEEEecC-CCCC
Confidence            99999999999999863 4544

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.51  E-value=2.1e-13  Score=94.20  Aligned_cols=77  Identities=18%  Similarity=0.211  Sum_probs=61.6

Q ss_pred             eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee---cCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      ...+.+|+.+.|.|.+.|.|.| .+.|+|++.++... ..++.+..   .+.|.|.++..+|+|.|+|.|.|..|.....
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P-~v~W~k~~~~i~~~-~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~   81 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAP-TVTWSRGDKAFTET-EGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHAS   81 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCC-eEEEEECCEECccC-CCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEE
Confidence            3567789999999999999877 89999999998642 23444332   2479999999999999999999999986544


Q ss_pred             eE
Q psy535          142 GQ  143 (460)
Q Consensus       142 ~~  143 (460)
                      ..
T Consensus        82 ~~   83 (86)
T cd05894          82 LF   83 (86)
T ss_pred             EE
Confidence            33

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.51  E-value=2.4e-13  Score=96.85  Aligned_cols=89  Identities=24%  Similarity=0.410  Sum_probs=66.7

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccc---cccEEEeec---CeEEEeecCCCCCeEEEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQ---TKDIVVMQN---GSLLFTRVNQNHQGRYTC  129 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~~---~~l~i~~~~~~d~G~y~C  129 (460)
                      .|.|...+....+..|+.++|.|.+.|.|.| .++|++++..+....   ..++.+...   +.|.|.++..+|+|.|+|
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C   80 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIP-SITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLC   80 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCC-EEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEE
Confidence            4666666666666668999999999998876 899999887764321   123332222   479999999999999999


Q ss_pred             EEEcCCCCcceeeEEE
Q psy535          130 TPYNAHGTQGSSGQME  145 (460)
Q Consensus       130 ~~~~~~g~~~~~~~~~  145 (460)
                      .|.|..|....+..|.
T Consensus        81 ~A~N~~G~~~~~~~l~   96 (97)
T cd05869          81 TASNTIGQDSQSMYLE   96 (97)
T ss_pred             EEecCCCCeeEEEEEE
Confidence            9999999876655543

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.51  E-value=1.5e-13  Score=93.32  Aligned_cols=75  Identities=21%  Similarity=0.398  Sum_probs=60.7

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV  146 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v  146 (460)
                      |+++.|.|.+.|.|.| .|.|+++|..+.............+.|.|.+++.+|+|.|+|.|.|..|...+++.+.|
T Consensus         1 G~~~~l~C~~~g~P~p-~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQP-TITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCC-EEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            6789999999998876 79999999988653333234455678999999999999999999999998766655544

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.50  E-value=1.6e-13  Score=92.05  Aligned_cols=72  Identities=25%  Similarity=0.476  Sum_probs=58.6

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL  147 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~  147 (460)
                      ++|.|.+.|.|.| .|+|+|++.++......++....++.|.|.+++.+|+|.|+|.|.|..|.. .+....|.
T Consensus         1 a~l~C~~~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~-~s~~a~l~   72 (74)
T cd05738           1 ATMLCAASGNPDP-EITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTR-YSAPANLY   72 (74)
T ss_pred             CEEEEEEeEecCC-EEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCce-EcccEEEE
Confidence            4799999999876 799999999886544566777777899999999999999999999999875 33344443

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.50  E-value=1.3e-13  Score=91.37  Aligned_cols=71  Identities=20%  Similarity=0.285  Sum_probs=58.5

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      +.|.|.+.|.|++ .+.|+|+|.++...   .......++|.|.++..+|+|.|+|.|.|..|....+..+.|.|
T Consensus         1 ~~l~c~v~g~P~p-~v~W~k~g~~l~~~---~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~v   71 (71)
T cd04976           1 VRLPVKVKAYPPP-EIQWYKNGKLISEK---NRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLVV   71 (71)
T ss_pred             CEEEeEEEEeCCC-EEEEEECCEECCCC---CEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEEC
Confidence            4689999999876 79999999998642   23345567899999999999999999999999877777766643

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.50  E-value=3.2e-13  Score=92.99  Aligned_cols=79  Identities=28%  Similarity=0.506  Sum_probs=58.9

Q ss_pred             eeEEEEEEEecCCCCC-eEEEeeCCeecCccc-cccEE---E-eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           72 LQGVVQCHIKANPTFQ-YVTWTKDKRLLEPYQ-TKDIV---V-MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        72 ~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~-~~~~~---~-~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      ++++|.|.+.|.|.+. .++|+++|.++.... ..++.   . ...++|.|.+++..|+|.|+|.|.|..|....++.  
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~--   78 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT--   78 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE--
Confidence            3689999999998763 689999998875322 12221   1 13468999999999999999999999988655544  


Q ss_pred             EEeeCCC
Q psy535          146 VLVRKPP  152 (460)
Q Consensus       146 v~v~~~p  152 (460)
                      |.|..||
T Consensus        79 L~V~~~P   85 (85)
T cd05854          79 LVVRGPP   85 (85)
T ss_pred             EEEECCC
Confidence            5555555

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.50  E-value=3.9e-13  Score=94.68  Aligned_cols=80  Identities=18%  Similarity=0.394  Sum_probs=61.9

Q ss_pred             CeeEEcceeeeec---ceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecC-CCCCeEEEEEEE
Q psy535           57 AKVTFTPTVQYLP---FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN-QNHQGRYTCTPY  132 (460)
Q Consensus        57 p~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~  132 (460)
                      |.|...|....+.   +|++++|.|.+.|.|.+ .|+|+|+|..+......++ ...++.|.|.++. .+|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P-~i~W~k~g~~l~~~~~~~~-~~~~g~L~i~~~~~~~D~G~Y~C~A~   79 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVP-TYRWLRNGTEIDTESDYRY-SLIDGNLIISNPSEVKDSGRYQCLAT   79 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCC-EEEEEECCeECccCCCceE-EeeCCeEEEccCCccCcCEEEEEEEE
Confidence            4555666665443   46899999999999877 8999999998864333333 3456789999875 699999999999


Q ss_pred             cCCCCc
Q psy535          133 NAHGTQ  138 (460)
Q Consensus       133 ~~~g~~  138 (460)
                      |..|..
T Consensus        80 N~~G~~   85 (94)
T cd05848          80 NSIGSI   85 (94)
T ss_pred             cCCCeE
Confidence            999976

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.49  E-value=4.2e-13  Score=93.21  Aligned_cols=78  Identities=19%  Similarity=0.480  Sum_probs=60.3

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee----c---CeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ----N---GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ  143 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~----~---~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~  143 (460)
                      |+.++|.|.+.|.|++ .++|+|++..+.... .++.+..    .   ++|.|.++..+|+|.|+|.|.|..|.....  
T Consensus         1 g~~~~l~C~~~g~p~~-~i~W~k~~~~i~~~~-~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~--   76 (88)
T cd05735           1 GQKKEMSCTAHGEKPI-IVRWEKEDRIINPEM-SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGI--   76 (88)
T ss_pred             CCeEEEEEEEECCCCC-EEEEeeCCEECCCCC-CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEE--
Confidence            6789999999998765 899999998886432 3443322    1   469999999999999999999999986554  


Q ss_pred             EEEEeeCCC
Q psy535          144 MEVLVRKPP  152 (460)
Q Consensus       144 ~~v~v~~~p  152 (460)
                      +.|.|..+|
T Consensus        77 ~~L~V~~~P   85 (88)
T cd05735          77 IQLTVQEPP   85 (88)
T ss_pred             EEEEEeCCC
Confidence            555555565

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.49  E-value=2.4e-13  Score=92.25  Aligned_cols=79  Identities=19%  Similarity=0.394  Sum_probs=58.7

Q ss_pred             eeEEEEEEEecCC-CCCeEEEeeCCeecCcc-ccccEEE----eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           72 LQGVVQCHIKANP-TFQYVTWTKDKRLLEPY-QTKDIVV----MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        72 ~~~~l~C~~~~~~-~~~~v~W~~~~~~~~~~-~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      +++.|.|.+.+.+ .+..+.|++||.++... ...++..    ..++.|.|.+++..|+|.|+|.|.|..+...+++.+.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            3689999997733 23479999999999632 2234433    2456899999999999999999999998876665555


Q ss_pred             EEeeCCC
Q psy535          146 VLVRKPP  152 (460)
Q Consensus       146 v~v~~~p  152 (460)
                      |  ..||
T Consensus        81 V--~~pP   85 (85)
T cd05853          81 V--RGPP   85 (85)
T ss_pred             E--ecCC
Confidence            4  5565

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.49  E-value=4.6e-13  Score=93.86  Aligned_cols=80  Identities=23%  Similarity=0.346  Sum_probs=61.7

Q ss_pred             CeeEEcceeeeecce---eeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecC-CCCCeEEEEEEE
Q psy535           57 AKVTFTPTVQYLPFR---LQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN-QNHQGRYTCTPY  132 (460)
Q Consensus        57 p~~~~~~~~~~~~~g---~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~  132 (460)
                      |.|...|....+.++   ..+.|.|.+.|.|.+ .++|+|++..+... ..++ ...++.|.|.++. .+|+|.|+|.|.
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P-~i~W~k~~~~i~~~-~~~~-~~~~g~L~I~~~~~~~D~G~Y~C~A~   78 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFP-IYKWRKNNLDIDLT-NDRY-SMVGGNLVINNPDKYKDAGRYVCIVS   78 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCC-EEEEEECCEEccCC-CCeE-EEECCEEEECcCCcCCCCEEEEEEEE
Confidence            556666666655544   379999999999877 89999999987532 2333 3457889999885 689999999999


Q ss_pred             cCCCCcc
Q psy535          133 NAHGTQG  139 (460)
Q Consensus       133 ~~~g~~~  139 (460)
                      |..|...
T Consensus        79 N~~G~~~   85 (93)
T cd05849          79 NIYGKVR   85 (93)
T ss_pred             eCcceEE
Confidence            9999763

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.49  E-value=5.2e-13  Score=96.53  Aligned_cols=82  Identities=24%  Similarity=0.487  Sum_probs=63.0

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcc---ccccEEEeecCeEEEee-----cCCCCCeEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPY---QTKDIVVMQNGSLLFTR-----VNQNHQGRY  127 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~---~~~~~~~~~~~~l~i~~-----~~~~d~G~y  127 (460)
                      ||.+...|....+.+|+++.|.|.+.|.|.+ .+.|+|+|..+...   .........++.+.+..     +..+|+|.|
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y   79 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTP-TIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY   79 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCC-EEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence            5778888889999999999999999999876 79999999988641   11223333444443332     368999999


Q ss_pred             EEEEEcCCCCc
Q psy535          128 TCTPYNAHGTQ  138 (460)
Q Consensus       128 ~C~~~~~~g~~  138 (460)
                      +|.|.|..|..
T Consensus        80 ~C~a~N~~G~~   90 (100)
T cd07693          80 VCVAHNSLGEA   90 (100)
T ss_pred             EEEEEccccce
Confidence            99999999984

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.49  E-value=3.3e-13  Score=94.10  Aligned_cols=81  Identities=21%  Similarity=0.360  Sum_probs=63.9

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe-ecCeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS  140 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~  140 (460)
                      .+.++.+.+|++++|.|.+.|. .+ .+.|+|++..+..   .++... .++.|.|.+++.+|+|.|+|.|.|..|.. .
T Consensus         9 ~~~~~~v~~g~~v~l~C~a~g~-~p-~i~W~kng~~l~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~   82 (91)
T cd05740           9 SVGNQPPEDNQPVTLTCEAEGQ-AT-YIWWVNNGSLLVP---PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNM-T   82 (91)
T ss_pred             ccCccccccCCcEEEEEEeCCC-CC-EEEEEECCEECCC---CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCE-E
Confidence            3445678899999999999998 54 8999999998753   233333 34589999999999999999999999986 4


Q ss_pred             eeEEEEEe
Q psy535          141 SGQMEVLV  148 (460)
Q Consensus       141 ~~~~~v~v  148 (460)
                      +..+.|.|
T Consensus        83 S~~~~L~V   90 (91)
T cd05740          83 SDPYILNV   90 (91)
T ss_pred             eeeEEEEe
Confidence            55565554

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.48  E-value=4.3e-13  Score=93.64  Aligned_cols=76  Identities=22%  Similarity=0.501  Sum_probs=62.6

Q ss_pred             cceeeeecceeeEEEEEEE-ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535           62 TPTVQYLPFRLQGVVQCHI-KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                      .|....+.+|+++.|.|.+ .+.|.+ .+.|+|++..+... ..++....++.|.|.++..+|+|.|+|.|.|..|...
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p-~i~W~k~g~~~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   78 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEP-TVSWRKDGQPLNLD-NERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERE   78 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCC-EEEEEECCEECCCC-CCCEEEccCCEEEEeECCcccCEEEEEEEEeccCcee
Confidence            4566778899999999998 576655 89999999988652 3455555678899999999999999999999988763

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.48  E-value=2.8e-13  Score=95.65  Aligned_cols=87  Identities=26%  Similarity=0.363  Sum_probs=68.8

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe-ecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      |.|...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.......+... ....|.|.++..+|+|.|+|.|.|..
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~   79 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPP-TVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS   79 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSS-EEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCC-cccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence            567778888999999999999999998765 8999999999875322222222 23469999999999999999999998


Q ss_pred             CCcceeeEE
Q psy535          136 GTQGSSGQM  144 (460)
Q Consensus       136 g~~~~~~~~  144 (460)
                      |.......+
T Consensus        80 g~~~~~~~l   88 (90)
T PF07679_consen   80 GEATASVNL   88 (90)
T ss_dssp             EEEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            876555444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.48  E-value=1.6e-13  Score=92.24  Aligned_cols=68  Identities=21%  Similarity=0.361  Sum_probs=57.1

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      |.+.+.|....+.+|++++|.|.+.+.|.+..+.|+|||..+..         ..+.|.|.++ .+|+|.|+|+|.+.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~---------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET---------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec---------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            35667888888999999999999998876557999999988731         3457999999 99999999999864

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.48  E-value=1.8e-13  Score=90.46  Aligned_cols=67  Identities=25%  Similarity=0.434  Sum_probs=56.2

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ  143 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~  143 (460)
                      +.|.|.+.|.|.+ .++|+|++..+..  ..++.+..++.|.|.++..+|+|.|+|.|.|..|....+..
T Consensus         1 v~L~C~~~g~P~p-~i~W~k~g~~~~~--~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   67 (69)
T cd05746           1 VQIPCSAQGDPEP-TITWNKDGVQVTE--SGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMV   67 (69)
T ss_pred             CEeEecceEeCCC-EEEEEECCEECCC--CCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence            4799999999876 7999999988763  34556666789999999999999999999999998755543

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.47  E-value=3.6e-13  Score=94.51  Aligned_cols=83  Identities=18%  Similarity=0.254  Sum_probs=63.2

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEE-EeecCeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIV-VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS  140 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~  140 (460)
                      .|....+.+|+.+.|.|.+.|.|.| .+.|++++..+......... ....+.|.|.++..+|.|.|+|.|.|..|....
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~P~p-~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~   84 (90)
T cd04972           6 GPNATVVYEGGTATIRCTAEGSPLP-KVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV   84 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEEEEcCCC-eEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence            4555668899999999999999876 89999999987532111111 122347999999999999999999999998765


Q ss_pred             eeEEE
Q psy535          141 SGQME  145 (460)
Q Consensus       141 ~~~~~  145 (460)
                      +..+.
T Consensus        85 ~~~L~   89 (90)
T cd04972          85 SVQVT   89 (90)
T ss_pred             EEEEe
Confidence            55443

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.47  E-value=4.9e-13  Score=92.73  Aligned_cols=79  Identities=25%  Similarity=0.459  Sum_probs=58.4

Q ss_pred             eeEEEEEEEecCCCCC-eEEEeeCCeecCcccc-c----cEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           72 LQGVVQCHIKANPTFQ-YVTWTKDKRLLEPYQT-K----DIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        72 ~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~-~----~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      +++.|.|.+.+.|.+. .+.|+++|..+..... .    .......+.|.|.+++..|+|.|+|.|.|..|....  .+.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~--~~~   78 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSA--SAD   78 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEE--EEE
Confidence            4689999999987653 5799999998753221 1    111234578999999999999999999999887644  455


Q ss_pred             EEeeCCC
Q psy535          146 VLVRKPP  152 (460)
Q Consensus       146 v~v~~~p  152 (460)
                      |.|..||
T Consensus        79 l~V~~pP   85 (85)
T cd04970          79 LIVRGPP   85 (85)
T ss_pred             EEEECCC
Confidence            5566565

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.46  E-value=5.1e-13  Score=89.68  Aligned_cols=70  Identities=24%  Similarity=0.481  Sum_probs=55.4

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC----eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG----SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      +.|.|.+.|.|.| .|.|+|++..+... ..++.+..++    +|.|.+++.+|+|.|+|.|.|..|....++.+.
T Consensus         1 v~L~C~v~G~P~P-~v~W~k~~~~i~~~-~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (75)
T cd05744           1 VRLECRVSAIPPP-QIFWKKNNEMLTYN-TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD   74 (75)
T ss_pred             CEEEEEEeecCCC-eEEEEECCEECCCC-CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence            4799999999887 79999999988642 2344443332    599999999999999999999999876665543

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.46  E-value=9.3e-13  Score=94.00  Aligned_cols=87  Identities=17%  Similarity=0.257  Sum_probs=64.6

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecCcc---ccccEEEee---cCeEEEeecCCCCCeEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLEPY---QTKDIVVMQ---NGSLLFTRVNQNHQGRY  127 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~~~---~~~~~~~~~---~~~l~i~~~~~~d~G~y  127 (460)
                      +|.+. .+.+..+.+|++++|.|.+.|.|.+ .+.|+|+  +..+...   ...++.+..   .+.|.|.++..+|+|.|
T Consensus         2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p-~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y   79 (98)
T cd05870           2 QPHII-QLKNETTVENGAATLSCKAEGEPIP-EITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRY   79 (98)
T ss_pred             CCEEE-eeccEEEcCCCcEEEEEecccCCCC-eEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEE
Confidence            45654 4667888899999999999998876 7999994  4433211   123444432   24799999999999999


Q ss_pred             EEEEEcCCCCcceeeEE
Q psy535          128 TCTPYNAHGTQGSSGQM  144 (460)
Q Consensus       128 ~C~~~~~~g~~~~~~~~  144 (460)
                      +|.|.|..|....+..|
T Consensus        80 ~C~A~N~~G~~~~~~~l   96 (98)
T cd05870          80 DCEAASRIGGHQKSMYL   96 (98)
T ss_pred             EEEEeccCCcceeEEEE
Confidence            99999999987655444

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.46  E-value=6.4e-13  Score=93.24  Aligned_cols=81  Identities=21%  Similarity=0.267  Sum_probs=62.1

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec--CeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN--GSLLFTRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                      .|....+.+|+++.|.|.+.+.|.+ .+.|++++..+.............  .+|.|.++..+|+|.|+|.|.|..|...
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p-~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDP-EVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET   85 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCC-eEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence            4556778899999999999998766 799999998876422112222222  2699999999999999999999999875


Q ss_pred             eeeE
Q psy535          140 SSGQ  143 (460)
Q Consensus       140 ~~~~  143 (460)
                      .+..
T Consensus        86 ~~~~   89 (92)
T cd05891          86 VDVT   89 (92)
T ss_pred             eEEE
Confidence            5443

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.44  E-value=1.4e-12  Score=93.11  Aligned_cols=86  Identities=24%  Similarity=0.434  Sum_probs=66.7

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec-------CeEEEeecCCC-CCeEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-------GSLLFTRVNQN-HQGRY  127 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~~-d~G~y  127 (460)
                      ||.+. .+....+.+|+++.|.|.+.|.|.|..|.|++++..+......++.+...       +.|.|.++..+ |.|.|
T Consensus         2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            45553 45566778899999999999988775699999999887544455555443       36999999994 59999


Q ss_pred             EEEEEcCCCCcceee
Q psy535          128 TCTPYNAHGTQGSSG  142 (460)
Q Consensus       128 ~C~~~~~~g~~~~~~  142 (460)
                      +|.|.|..|......
T Consensus        81 ~C~A~N~~G~~~~~~   95 (98)
T cd05758          81 NCTAWNSFGSGTAII   95 (98)
T ss_pred             EEEEEcCCCcccEEE
Confidence            999999999875543

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.44  E-value=5.8e-13  Score=88.53  Aligned_cols=68  Identities=25%  Similarity=0.419  Sum_probs=53.8

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM  144 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~  144 (460)
                      +.|.|.+.|.|.| .+.|+|++..+...  .......+++|.|.++..+|+|.|+|.|.|..|.......+
T Consensus         1 ~~L~C~~~G~P~P-~v~W~k~~~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   68 (71)
T cd05876           1 LVLECIAEGLPTP-EVHWDRIDGPLSPN--RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTV   68 (71)
T ss_pred             CEEEEEeeEecCC-eEEEEECCcCCCCC--ceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEE
Confidence            4789999999887 79999999877532  22233456789999999999999999999999986554443

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.44  E-value=9.7e-13  Score=89.51  Aligned_cols=74  Identities=14%  Similarity=0.224  Sum_probs=58.8

Q ss_pred             ceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      |....+.+|+.+.|.|.+.+. .+ .+.|+|+|.++...  .++.+ ..+.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~-~v~W~k~g~~l~~~--~~~~~-~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~   74 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQ-SINWTKDGVQLGEN--NRTRI-TGEEVQIKDAVPRDSGLYACVTSSPSGSDTTY   74 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-Cc-eEEEeeCCcCCCCC--ceEEE-eCCEEEECCCChhhCEEEEEEEeCCCCcccEE
Confidence            345667889999999999885 33 79999999988642  33433 45689999999999999999999988775443

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.44  E-value=2.2e-12  Score=90.57  Aligned_cols=84  Identities=23%  Similarity=0.428  Sum_probs=62.2

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEeec----CeEEEeecCCCCCeEEEEEEEc
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQN----GSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      +.+.|....+.+|+++.|.|.+.|.| + .++|++ ++..+..  ..++....+    ++|.|.++..+|+|.|+|.|.|
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p-~-~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   78 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEP-K-DISWFSPNGEKLVT--QQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATD   78 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeC-C-eEEEECCCCCEecc--CCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEc
Confidence            34567778889999999999999985 3 799998 5655543  223333333    3799999999999999999999


Q ss_pred             CCCCcceeeEEEEE
Q psy535          134 AHGTQGSSGQMEVL  147 (460)
Q Consensus       134 ~~g~~~~~~~~~v~  147 (460)
                      ..|.. ..+.+.|.
T Consensus        79 ~~g~~-~~~sv~l~   91 (92)
T cd04977          79 AKGTE-SEATVNLK   91 (92)
T ss_pred             CCCCc-ceeEEEEE
Confidence            87654 35555554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.44  E-value=6.7e-13  Score=87.95  Aligned_cols=67  Identities=25%  Similarity=0.455  Sum_probs=54.8

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM  144 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~  144 (460)
                      ++|.|.+.|.|++ .+.|+|++..+.   ..+.....++.|.|.++..+|+|.|+|.|.|..|....+..+
T Consensus         1 v~l~C~~~g~P~p-~v~W~k~~~~~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   67 (69)
T cd05725           1 VEFQCEVGGDPVP-TVLWRKEDGELP---KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASL   67 (69)
T ss_pred             CEEEEECccCCCC-EEEEEECCccCC---CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEE
Confidence            4799999998876 799999987663   244555577889999999999999999999999987555444

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.44  E-value=1e-12  Score=92.20  Aligned_cols=75  Identities=25%  Similarity=0.384  Sum_probs=59.0

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCeecCc------cccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEP------YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM  144 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~------~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~  144 (460)
                      |+++.|.|.+.+.|.+ .+.|+|++..+..      ....++.+..++.|.|.+++.+|+|.|+|.|.|..|....++.+
T Consensus         1 G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   79 (90)
T cd05726           1 GRTVTFQCEATGNPQP-AIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYL   79 (90)
T ss_pred             CCEEEEEEECCccCCC-EEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEE
Confidence            6789999999998876 7999998865311      12345666667789999999999999999999999987655554


Q ss_pred             EE
Q psy535          145 EV  146 (460)
Q Consensus       145 ~v  146 (460)
                      .|
T Consensus        80 ~V   81 (90)
T cd05726          80 EV   81 (90)
T ss_pred             EE
Confidence            44

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.43  E-value=1e-12  Score=91.44  Aligned_cols=78  Identities=23%  Similarity=0.349  Sum_probs=60.0

Q ss_pred             eeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccc-cEEE-eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535           66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTK-DIVV-MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ  143 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~  143 (460)
                      ..+.+|+.+.|.|.+.|.|.+ .+.|+|+|..+...... .+.. .....|.|.++..+|+|.|+|.|.|..|....+..
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   82 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   82 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCC-EEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence            346789999999999998765 89999999988643221 1111 23447999999999999999999999998665544


Q ss_pred             E
Q psy535          144 M  144 (460)
Q Consensus       144 ~  144 (460)
                      +
T Consensus        83 l   83 (85)
T cd05857          83 L   83 (85)
T ss_pred             E
Confidence            4

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.43  E-value=8.9e-13  Score=86.48  Aligned_cols=71  Identities=18%  Similarity=0.101  Sum_probs=54.9

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL  147 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~  147 (460)
                      +.|.|.+.|.|+| .+.|+|++.++.... .++ ...+.+|.|.++..+|+|.|+|.|.+..........++|.
T Consensus         1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~~~-~~~-~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~~   71 (72)
T cd07702           1 YRLTPKVKAFPAP-EVIWLKDGLPAAEKC-SRY-HVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITLI   71 (72)
T ss_pred             CeEEeeEEEcCCC-eEEEEECCEECCCCC-cEE-EeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEEE
Confidence            3689999999887 799999999886422 233 2345589999999999999999999986665555555554

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.43  E-value=2.1e-12  Score=93.65  Aligned_cols=95  Identities=17%  Similarity=0.278  Sum_probs=66.5

Q ss_pred             ecCCeeEEcceeeee----cceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe--e-----cCeEEEeecC-C
Q psy535           54 EFPAKVTFTPTVQYL----PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--Q-----NGSLLFTRVN-Q  121 (460)
Q Consensus        54 ~~~p~~~~~~~~~~~----~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~-----~~~l~i~~~~-~  121 (460)
                      ..+|.|...|....+    ..|..+.|.|.+.|.|++ .+.|+|+|..+... ..++...  .     .+.|.|.++. .
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p-~i~W~k~g~~l~~~-~~r~~~~~~~~~~~~~s~L~I~~v~~~   79 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRV-QFRWAKNGVPLDLG-NPRYEETTEHTGTVHTSILTIINVSAA   79 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECcccCCC-EEEEEECCEECCCC-CCeEEEEeeccCccceeEEEECcCCcc
Confidence            345555544442222    235789999999998876 89999999988642 2233211  1     2469999987 5


Q ss_pred             CCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535          122 NHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP  152 (460)
Q Consensus       122 ~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p  152 (460)
                      +|.|.|+|.|.|..|..  ...+.|.+..+|
T Consensus        80 ~D~G~Y~C~A~N~~G~~--~~~i~L~~~~~p  108 (109)
T cd05773          80 LDYALFTCTAHNSLGED--SLDIQLVSTSRP  108 (109)
T ss_pred             CCCEEEEEEEEeCCccC--cEEEEEEecCCC
Confidence            89999999999999986  445666666665

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.43  E-value=1e-12  Score=89.26  Aligned_cols=74  Identities=19%  Similarity=0.304  Sum_probs=57.8

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec---CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN---GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL  147 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~  147 (460)
                      |+++.|.|.+.|.|.| .++|++++..+..  ..++.+...   +.|.|.++..+|+|.|+|.|.|..|.......+.+.
T Consensus         1 G~~v~l~C~~~g~P~p-~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~~   77 (78)
T cd05743           1 GETVEFTCVATGVPTP-IINWRLNWGHVPD--SARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGILT   77 (78)
T ss_pred             CCEEEEEEEEEEecCC-EEEEEECCeECCC--CCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEEE
Confidence            6789999999999876 7999999887753  233333222   479999999999999999999999987665555443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.42  E-value=1.8e-12  Score=90.77  Aligned_cols=75  Identities=20%  Similarity=0.342  Sum_probs=55.4

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCC----eecCccccccEEEe----------ecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDK----RLLEPYQTKDIVVM----------QNGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~----~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      |++++|.|.+.|.|.| .|+|+|++    ..+.+.........          ....|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~l~C~v~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEEEeCCCCC-eEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence            5789999999999876 79999963    33322122211111          224699999999999999999999999


Q ss_pred             CcceeeEEEE
Q psy535          137 TQGSSGQMEV  146 (460)
Q Consensus       137 ~~~~~~~~~v  146 (460)
                      ....++.|.|
T Consensus        80 ~~~~sa~L~V   89 (90)
T cd04974          80 PSHHSAWLTV   89 (90)
T ss_pred             cccCCEEEEe
Confidence            9877776655

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.41  E-value=3.2e-12  Score=89.35  Aligned_cols=86  Identities=23%  Similarity=0.439  Sum_probs=69.9

Q ss_pred             CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccc
Q psy535          152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  231 (460)
                      +.+...|... .+..|+.+.|.|.+   .|.|.|.+.|++++............++.|.|.++..+|+|.|.|.|.|..|
T Consensus         2 ~~~~~~p~~~-~~~~g~~v~l~C~~---~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (88)
T cd04968           2 SIIVVFPKDT-YALKGQNVTLECFA---LGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKG   77 (88)
T ss_pred             CcEEECCCce-EEeCCCcEEEEEEe---eEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCC
Confidence            3444455554 57889999999998   7999999999997665555444455678899999999999999999999999


Q ss_pred             eeeeeeEEEE
Q psy535          232 TIVQAAQLVV  241 (460)
Q Consensus       232 ~~~~~~~l~v  241 (460)
                      .......|.|
T Consensus        78 ~~~~~~~l~V   87 (88)
T cd04968          78 KDTHQGRIYV   87 (88)
T ss_pred             cEEEEEEEEE
Confidence            9888877765

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.41  E-value=1.3e-12  Score=88.47  Aligned_cols=73  Identities=16%  Similarity=0.226  Sum_probs=58.3

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                      ...|....+.+|+++.|.|.+.|.|.|..|+|+|+|.++...  .   ....+.|.|.++  .|+|.|+|.|.|..|...
T Consensus         2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~---~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~   74 (81)
T cd05749           2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--P---APSPSVLNVPGL--NETSKFSCEAHNAKGVTT   74 (81)
T ss_pred             cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--C---CCCCCEEEEccc--cCCeEEEEEEEeccCcEE
Confidence            456777888999999999999999877469999999988531  1   123457888877  478999999999999763

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.41  E-value=2e-12  Score=92.31  Aligned_cols=87  Identities=25%  Similarity=0.305  Sum_probs=64.2

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccc---cccEEEee---cCeEEEeecCCCCCeEEEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQ---TKDIVVMQ---NGSLLFTRVNQNHQGRYTC  129 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~---~~~l~i~~~~~~d~G~y~C  129 (460)
                      +|.+. .+....+.+|+++.|.|.+.|.|.+ .+.|++++..+....   ..++.+..   .+.|.|.+++.+|+|.|+|
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   79 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIP-EITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDC   79 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCC-cEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEE
Confidence            45554 4456778889999999999998766 799999886654211   12233222   2379999999999999999


Q ss_pred             EEEcCCCCcceeeEE
Q psy535          130 TPYNAHGTQGSSGQM  144 (460)
Q Consensus       130 ~~~~~~g~~~~~~~~  144 (460)
                      .|.|..|....+..+
T Consensus        80 ~a~N~~G~~~~s~~l   94 (96)
T cd05732          80 EASNRIGGDQQSMYL   94 (96)
T ss_pred             EEEeCCCCcEEEEEE
Confidence            999999987555443

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.41  E-value=1.7e-12  Score=86.29  Aligned_cols=72  Identities=24%  Similarity=0.532  Sum_probs=61.2

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-ecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      |+.+.|.|.+   .|.|.|.+.|++++..+....++.+ .+++|.|.++...|.|.|+|.|.|..|....+..|.|
T Consensus         1 G~~~~l~C~~---~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKP---KAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEec---ceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            6789999999   7999999999996655555556665 4578999999999999999999999999988887754

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.40  E-value=2.2e-12  Score=84.78  Aligned_cols=67  Identities=21%  Similarity=0.353  Sum_probs=52.0

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ  143 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~  143 (460)
                      |+++.|.|.+.|.|.| .|+|+|++.++...  .+. ......|.|.++.  |+|.|+|.|.|..|....++.
T Consensus         1 G~~v~L~C~a~G~P~P-~v~W~k~g~~l~~~--~~~-~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~   67 (69)
T cd05739           1 GGSVNLTCVAVGAPMP-YVKWMKGGEELTKE--DEM-PVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQ   67 (69)
T ss_pred             CCeEEEEEEeeecCCC-EEEEEECCEECCCc--cce-ecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEE
Confidence            5689999999999887 79999999887532  222 2234568888874  899999999999998655544

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.40  E-value=2.9e-12  Score=86.30  Aligned_cols=69  Identities=22%  Similarity=0.479  Sum_probs=55.1

Q ss_pred             eeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceee
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG  142 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~  142 (460)
                      |+.+.|.|.+.|.|.+ .+.|++ ++..+..  ..+.....+++|.|.++..+|+|.|+|.|.|..|......
T Consensus         1 G~~~~l~C~~~g~P~p-~v~W~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   70 (74)
T cd05764           1 GQRATLRCKARGDPEP-AIHWISPDGKLISN--SSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATV   70 (74)
T ss_pred             CCeEEEEEEccCcCCC-EEEEEeCCCEEecC--CCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEE
Confidence            6789999999998776 899997 5665542  2344556678999999999999999999999998764443

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.40  E-value=2.3e-12  Score=86.95  Aligned_cols=72  Identities=24%  Similarity=0.495  Sum_probs=54.4

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCcc-ccccEEEe-ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPY-QTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV  146 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v  146 (460)
                      ++|.|.+.|.|.| .++|+|++....+. ...++... .++.|.|.+++.+|+|.|+|.|.|..|....+..+.|
T Consensus         1 a~l~C~~~G~P~P-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTP-QIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCC-EEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            4799999999877 79999998653322 22333333 3468999999999999999999999998766555544

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.39  E-value=2.6e-12  Score=90.04  Aligned_cols=75  Identities=20%  Similarity=0.304  Sum_probs=55.8

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeC----CeecCccccccEEEee----------cCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKD----KRLLEPYQTKDIVVMQ----------NGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~----~~~~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      |+++.|.|.+.+.|.| .|+|+|+    +..+.+.......+..          .+.|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~L~C~~~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKVYSDAQP-HIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEEecCCCC-EEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence            5789999999999886 8999984    4444332222222111          14699999999999999999999999


Q ss_pred             CcceeeEEEE
Q psy535          137 TQGSSGQMEV  146 (460)
Q Consensus       137 ~~~~~~~~~v  146 (460)
                      ....++.+.|
T Consensus        80 ~~~~~a~L~V   89 (90)
T cd05858          80 ISHHSAWLTV   89 (90)
T ss_pred             cccceEEEEE
Confidence            8877766654

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.39  E-value=2.9e-12  Score=86.31  Aligned_cols=68  Identities=25%  Similarity=0.398  Sum_probs=53.7

Q ss_pred             eEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee---cCeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535           73 QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ  143 (460)
Q Consensus        73 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~  143 (460)
                      .+.|.|.+.|.|.| .++|+|+|..+..  ..++.+..   .+.|.|.++..+|+|.|+|.|.|..|....+..
T Consensus         1 ~~~l~c~~~G~P~p-~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   71 (74)
T cd05748           1 SVRLEVPISGRPTP-TVTWSKDGKPLKL--SGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATIN   71 (74)
T ss_pred             CEEEEeeEeeeCCC-eEEEEECCEEcCC--CCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence            36899999999887 7999999998853  23333322   347999999999999999999999998655443

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>KOG3515|consensus

Probab=99.38  E-value=3.6e-11  Score=112.07  Aligned_cols=351  Identities=16%  Similarity=0.161  Sum_probs=207.4

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEecCCeeEE-cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCe
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVEFPAKVTF-TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR   96 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~   96 (460)
                      .+........|.|.|+|.+.+..... .+..+.|.+..+|.+.. ........+++.....-.+.++|....+.|.+.+.
T Consensus       362 ~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~  441 (741)
T KOG3515|consen  362 SHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLY  441 (741)
T ss_pred             EeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecce
Confidence            56677888999999999999876442 24445556655554432 23333344444444444444777777899999999


Q ss_pred             ecCccccccEEEeecCeE-EEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEee
Q psy535           97 LLEPYQTKDIVVMQNGSL-LFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCE  175 (460)
Q Consensus        97 ~~~~~~~~~~~~~~~~~l-~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~  175 (460)
                      ++.......+.+...+-+ .+.++.+.|.|.|.|.++|..|...  ..+.+.+...|.+....... ....++.+.+.|.
T Consensus       442 ~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~--~~~~~~~~~sp~~~~~~~~~-~~~~~ns~~~~~~  518 (741)
T KOG3515|consen  442 KLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQ--AYLLLGVHTSPHNHHLQDQV-EGATGNSVDGECM  518 (741)
T ss_pred             ecccccCceEEeeccccccccceeeeccCCcceeeeccCCCcee--eEEeeccccCCccccccccc-ccCCCCcccceee
Confidence            887766666666555543 3778999999999999999888754  34445555555544333333 4556777899999


Q ss_pred             eeccCCCCCCeeEEEcCCCccCCcc-------cEEEecceEEEccccceeceEEEEEEecccce-eeeeeEEEEecCC--
Q psy535          176 AQEAEGTQKPTITWQRRDGVALPKN-------RVKIVGGNITIEGLRRVDFGYYECVVSNEVAT-IVQAAQLVVEGTQ--  245 (460)
Q Consensus       176 ~~~~~~~p~~~~~W~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~-~~~~~~l~v~~~~--  245 (460)
                      ... .....--+.|.+.+ ...+..       .-....+.+.+........+.|.|.+.+ .+. ......+.+...+  
T Consensus       519 q~~-~~~~~~m~~~~r~g-e~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~pA~~~~~l~~~s~~~v  595 (741)
T KOG3515|consen  519 QDE-QPQDQQMHHEPRSG-EPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDG-SSPPAGLSLVLKAYSALIV  595 (741)
T ss_pred             ccc-cccchhhhcccccC-CCCcccccccccccccCCccceeecccccccccceEEeecC-CCCccccceEEEecccccc
Confidence            731 12223367788743 333211       1112334566666666667899999998 333 2222333332211  


Q ss_pred             -CCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCC---Ce-eeeec--cCCCCceEEEccCccCccEEEE
Q psy535          246 -PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK---DW-LPIPV--TPPGSTQITINRLTPATTYEFQ  318 (460)
Q Consensus       246 -p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~--~~~~~~~~~i~~l~~~~~~~~~  318 (460)
                       +..|...........++..|.  +.+.+.+.   ..|-+.....   .. .....  ........-+-+...+..|.+.
T Consensus       596 ~~~tp~~~~~~~g~v~as~~~~--a~~~~~~~---~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~~~  670 (741)
T KOG3515|consen  596 TVRTPNMYTAQEGCVNASDDCV--ASGVPSTS---FTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHIDGSDYENG  670 (741)
T ss_pred             cccCCceeeeccCcccccccce--ecccccce---eecccCCCcccCCceEEEeeeeccccccccccccCCcchhhhcce
Confidence             111221122222224444442  22222221   2333222110   00 00000  0112233334455566777799


Q ss_pred             EEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCC
Q psy535          319 VVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS  384 (460)
Q Consensus       319 ~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~  384 (460)
                      |.+.|.+|....+..+..-   ..|..|.++.+.... ..+.|.|.+..+ ++..+.|.+.|...+.
T Consensus       671 c~t~n~lg~~~v~~~~~~~---t~~~~~~n~~~~~~~~~~i~l~~~p~fd-gg~~q~f~~~~~~~~~  733 (741)
T KOG3515|consen  671 CTTQNLLGSDHVSGAIHSG---TASVGPINLTYDNLTYSTISLEWMPGFD-GGLQQRFFLKYYDLGT  733 (741)
T ss_pred             eeecccCCCccccceecCC---cCCCCccceEeeeeeeeeeceeeeeccc-cccccceeeehhhcCC
Confidence            9999999988777666543   347889999987776 589999999988 6667889999987664

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.38  E-value=2.7e-12  Score=90.00  Aligned_cols=79  Identities=20%  Similarity=0.251  Sum_probs=59.4

Q ss_pred             eeeeecceeeEEEEEEEec-----CCCCCeEEEeeCCeecCcc--ccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           64 TVQYLPFRLQGVVQCHIKA-----NPTFQYVTWTKDKRLLEPY--QTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~-----~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      ....+.+|+.+.|.|.+.+     .|.+ .|.|+|++..+...  ...++. ..++.|.|.++..+|+|.|+|.+.|..|
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~-~v~Wyk~~~~~~~~~~~~~r~~-~~~~~L~I~~~~~~DsG~Y~C~~~N~~g   84 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGL-NLTWYKSDGKTPIPTEERSRMH-QQKDLLWFLPAALEDSGLYTCVVRNSTY   84 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCc-eEEEEEcCCCCcccccccceee-ecCCeEEEccCCcccCeEEEEEEcCCCc
Confidence            3456778999999999988     4554 79999998764321  122332 2467899999999999999999999988


Q ss_pred             CcceeeEE
Q psy535          137 TQGSSGQM  144 (460)
Q Consensus       137 ~~~~~~~~  144 (460)
                      .......+
T Consensus        85 ~~~~~~~L   92 (94)
T cd05756          85 CMKVSISL   92 (94)
T ss_pred             cEEEEEEE
Confidence            86554443

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.37  E-value=4.2e-12  Score=87.80  Aligned_cols=81  Identities=28%  Similarity=0.567  Sum_probs=67.9

Q ss_pred             CCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeee
Q psy535          157 KPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA  236 (460)
Q Consensus       157 ~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  236 (460)
                      .|... .+..|+.+.|.|.+   .|.|.|.+.|++++.......++...++.|.|.++..+|.|.|+|.|.|..|....+
T Consensus         5 ~p~~~-~~~~G~~~~l~C~~---~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   80 (85)
T cd05728           5 VISDT-EADIGSSLRWECKA---SGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYAS   80 (85)
T ss_pred             cCCcc-EEcCCCcEEEEEEe---eEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEE
Confidence            34444 67899999999999   799999999999665544455677778899999999999999999999999998888


Q ss_pred             eEEEE
Q psy535          237 AQLVV  241 (460)
Q Consensus       237 ~~l~v  241 (460)
                      ..|.|
T Consensus        81 ~~l~V   85 (85)
T cd05728          81 AELAV   85 (85)
T ss_pred             EEEEC
Confidence            77653

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.37  E-value=4.7e-12  Score=84.57  Aligned_cols=67  Identities=19%  Similarity=0.278  Sum_probs=51.2

Q ss_pred             EEEEEEecCCCCCeEEEeeCCeecCccccccEE--E----eecCeEEEeecCCCCCeEEEEEEEcCCCCcceee
Q psy535           75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIV--V----MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG  142 (460)
Q Consensus        75 ~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~----~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~  142 (460)
                      .+.|.+.|.|.| .|+|+|||.++.........  .    ...+.|.|.++..+|+|.|+|.|.|..|....+.
T Consensus         2 ~i~~~v~G~P~P-ti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~   74 (79)
T cd05855           2 CIPFTVKGNPKP-TLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNV   74 (79)
T ss_pred             eEEEEEeEeCCC-ceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEE
Confidence            378999999987 79999999999643211111  1    1234799999999999999999999999865543

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.37  E-value=5.1e-12  Score=85.80  Aligned_cols=67  Identities=21%  Similarity=0.343  Sum_probs=51.5

Q ss_pred             EEEEEEecCCCCCeEEEeeCCeecCccccccEEEe--------ecCeEEEeecCCCCCeEEEEEEEcCCCCcceee
Q psy535           75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--------QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG  142 (460)
Q Consensus        75 ~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~  142 (460)
                      .+.|.+.|.|.| .|+|+|+|.++.+.........        ..+.|.|.++..+|+|.|+|.|.|..|....+.
T Consensus         2 ~i~~~v~G~P~P-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~   76 (81)
T cd04971           2 CIPFTVRGNPKP-TLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSI   76 (81)
T ss_pred             eEEEEeEeeCCC-cEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEE
Confidence            368999999887 7999999999975332111111        134699999999999999999999999865443

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.37  E-value=2.7e-12  Score=88.79  Aligned_cols=73  Identities=23%  Similarity=0.406  Sum_probs=56.6

Q ss_pred             eecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      ....|+++.|.|.+.+.|.+ .+.|++++..+..... .........|.|.++..+|+|.|+|.|.|..|.....
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p-~i~W~k~~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   77 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRP-DITWLKDNKPLTPTEI-GESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINAT   77 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCC-cEEEEECCcCCcCCcc-ceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEE
Confidence            45679999999999998876 6999999988754221 1112223579999999999999999999999875433

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.36  E-value=8.4e-12  Score=84.52  Aligned_cols=72  Identities=26%  Similarity=0.508  Sum_probs=57.0

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC-eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG-SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV  146 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v  146 (460)
                      +.|.|.+.|.|++ .+.|+|++..+.+....++....++ .|.|.++..+|.|.|+|.+.|..|.......+.|
T Consensus         1 ~~L~C~v~g~P~p-~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (76)
T cd05736           1 ASLRCHAEGIPLP-RLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV   73 (76)
T ss_pred             CEeEeEeeecCCC-EEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence            4689999998876 7999999998875444445544444 6999999999999999999999998765555444

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.35  E-value=5.5e-12  Score=85.28  Aligned_cols=64  Identities=27%  Similarity=0.591  Sum_probs=51.1

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEE-eecCeEEEeecCC----CCCeEEEEEEEcCCCCc
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV-MQNGSLLFTRVNQ----NHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~----~d~G~y~C~~~~~~g~~  138 (460)
                      ++|.|.+.|.|.| .|+|+|++..+......++.. ..++.|.|.++..    +|+|.|+|.|.|..|..
T Consensus         1 i~l~C~~~G~P~P-~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05733           1 IVIKCEAKGNPPP-TFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTA   69 (77)
T ss_pred             CEEEeeCcccCCC-eEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence            4799999999876 799999999886544444443 3467899998754    78999999999999976

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.35  E-value=4.5e-12  Score=84.76  Aligned_cols=68  Identities=22%  Similarity=0.347  Sum_probs=52.1

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM  144 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~  144 (460)
                      +.|.|.+.|.|.| .+.|+|++..+...  ........+.|.|.++..+|+|.|+|.|.|..|.......+
T Consensus         1 v~l~C~~~g~P~p-~v~W~k~~~~~~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   68 (71)
T cd05731           1 LLLECIAEGLPTP-EISWIKIGGELPAD--RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV   68 (71)
T ss_pred             CEEEEEeeEecCC-eEEEEECCeECCCC--ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence            4799999999876 79999998876431  12222334589999999999999999999999976544433

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=99.35  E-value=4.7e-12  Score=88.40  Aligned_cols=84  Identities=37%  Similarity=0.650  Sum_probs=66.5

Q ss_pred             CCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535          344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS  422 (460)
Q Consensus       344 ~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (460)
                      .+|.++.+.... +++.|+|+++...++.+.+|.|+|+..+.-.                        .|.... .....
T Consensus         1 s~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~------------------------~~~~~~-~~~~~   55 (85)
T PF00041_consen    1 SAPENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTS------------------------DWQEVT-VPGNE   55 (85)
T ss_dssp             SSSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSS------------------------EEEEEE-EETTS
T ss_pred             CcCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccce------------------------eeeeee-eeeee
Confidence            368899999876 6999999999877889999999999765300                        111111 12345


Q ss_pred             ceEEECCCCcCceEEEEEEEeecCCCCCCC
Q psy535          423 TQITINRLTPATTYEFQVVGKNELGDGMLS  452 (460)
Q Consensus       423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s  452 (460)
                      ..+.|.+|.|++.|.|+|+|+|..|.|++|
T Consensus        56 ~~~~i~~L~p~t~Y~~~v~a~~~~g~g~~S   85 (85)
T PF00041_consen   56 TSYTITGLQPGTTYEFRVRAVNSDGEGPPS   85 (85)
T ss_dssp             SEEEEESCCTTSEEEEEEEEEETTEEEEEE
T ss_pred             eeeeeccCCCCCEEEEEEEEEeCCcCcCCC
Confidence            699999999999999999999999999876

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.35  E-value=7.2e-12  Score=85.45  Aligned_cols=72  Identities=26%  Similarity=0.451  Sum_probs=54.0

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCcc------ccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPY------QTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL  147 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~  147 (460)
                      ++|.|.+.|.|.| .+.|++++....+.      ...++....+++|.|.++..+|+|.|+|.|.|..|.. .+..+.|.
T Consensus         1 v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~s~~~~l~   78 (79)
T cd05734           1 VTLNCSAEGYPPP-TIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGAD-ASKSMVLT   78 (79)
T ss_pred             CEeEeeCeEeCCC-EEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCC-CceEEEEe
Confidence            5799999999877 79999964322111      2345555667899999999999999999999999876 34444443

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.34  E-value=1e-11  Score=84.58  Aligned_cols=70  Identities=20%  Similarity=0.427  Sum_probs=56.6

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      .|....+..|+++.|.|.+.+ +. +.|+|++||.++.... .++ ...++.|.|.+++.+|+|.|+|.+.+..
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~-~~i~W~~ng~~i~~~~-~r~-~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NL-ARVVWKFDGKVLTPES-AKY-LLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CC-CeEEEEECCEECCCCC-ceE-EEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            466778889999999999864 44 4799999999987532 344 3456789999999999999999998753

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.33  E-value=1.2e-11  Score=83.43  Aligned_cols=65  Identities=25%  Similarity=0.494  Sum_probs=50.2

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEE-eecCeEEEeecCC----CCCeEEEEEEEcCCCCcc
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV-MQNGSLLFTRVNQ----NHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~----~d~G~y~C~~~~~~g~~~  139 (460)
                      +.|.|.+.|.|.| .|+|+|++.++......++.. ..+++|.|..+..    .|+|.|+|.|.|..|...
T Consensus         1 ~~l~C~a~G~P~P-~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05874           1 IVIQCEAKGKPPP-SFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAV   70 (77)
T ss_pred             CEEEeeCcccCCC-eEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEE
Confidence            4799999999876 799999999875433334433 3467898887764    378999999999999763

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.33  E-value=7.8e-12  Score=83.99  Aligned_cols=73  Identities=33%  Similarity=0.546  Sum_probs=59.3

Q ss_pred             CCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-ecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       166 ~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      +|+.+.|.|.+   .|.|.|.+.|++++.......+... .++.|.|.++...|.|.|+|.|.|..|.......|.|
T Consensus         1 eG~~v~l~C~~---~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEA---QGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeEC---CEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            48899999999   8999999999995543333333332 4568999999999999999999999999888877654

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.33  E-value=1.9e-11  Score=84.90  Aligned_cols=78  Identities=24%  Similarity=0.463  Sum_probs=62.2

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc--ccEEEe--------cceEEEccccceeceEEEEEEecccceeeee
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPK--NRVKIV--------GGNITIEGLRRVDFGYYECVVSNEVATIVQA  236 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~--~~~~~~--------~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  236 (460)
                      |+.++|.|.+   .|.|.+.+.|++++ ..+..  .++.+.        ...|.|.++...|.|.|+|.|.|..|.....
T Consensus         1 g~~~~l~C~~---~g~p~~~i~W~k~~-~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~   76 (88)
T cd05735           1 GQKKEMSCTA---HGEKPIIVRWEKED-RIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGI   76 (88)
T ss_pred             CCeEEEEEEE---ECCCCCEEEEeeCC-EECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEE
Confidence            7889999999   78899999999954 34422  233322        1469999999999999999999999999999


Q ss_pred             eEEEEecCCCCCC
Q psy535          237 AQLVVEGTQPHAP  249 (460)
Q Consensus       237 ~~l~v~~~~p~~p  249 (460)
                      ..|.|.. +|.+|
T Consensus        77 ~~L~V~~-~P~~P   88 (88)
T cd05735          77 IQLTVQE-PPDPP   88 (88)
T ss_pred             EEEEEeC-CCCCC
Confidence            9999986 45544

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.33  E-value=1.4e-11  Score=83.09  Aligned_cols=65  Identities=22%  Similarity=0.495  Sum_probs=50.3

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEE-eecCeEEEeecC----CCCCeEEEEEEEcCCCCcc
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV-MQNGSLLFTRVN----QNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~----~~d~G~y~C~~~~~~g~~~  139 (460)
                      +.|.|.+.|.|.| .|+|+|++..+......++.. ..+++|.|..+.    .+|+|.|+|.|.|..|...
T Consensus         1 ~~l~C~~~G~P~P-~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05875           1 IIIECEAKGNPVP-TFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL   70 (77)
T ss_pred             CEEEEeccccCCC-EEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence            4799999999876 899999998764333444444 356789998764    2479999999999999763

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.32  E-value=1.4e-11  Score=86.83  Aligned_cols=85  Identities=27%  Similarity=0.500  Sum_probs=68.9

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cceEEEccccceeceEEEEEE
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVV  226 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a  226 (460)
                      ||.+...|... .+..|+.+.|.|.+   .|.|.|.+.|++++..+....++.+.    .+.|.|.++...|.|.|+|.|
T Consensus         3 ~~~~~~~p~~~-~~~~G~~~~L~C~~---~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   78 (92)
T cd05747           3 PATILTKPRSL-TVSEGESARFSCDV---DGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVV   78 (92)
T ss_pred             CCcccccCccE-EEeCCCcEEEEEEE---eecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEE
Confidence            67777777665 78999999999999   89999999999965544444455443    247999999999999999999


Q ss_pred             ecccceeeeeeEE
Q psy535          227 SNEVATIVQAAQL  239 (460)
Q Consensus       227 ~n~~g~~~~~~~l  239 (460)
                      .|..|.....+.|
T Consensus        79 ~N~~G~~~~~~~l   91 (92)
T cd05747          79 ENSEGKQEAQFTL   91 (92)
T ss_pred             EcCCCCEeEEEEe
Confidence            9999998777655

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.31  E-value=2.8e-11  Score=85.06  Aligned_cols=80  Identities=18%  Similarity=0.341  Sum_probs=59.8

Q ss_pred             CeeEEcceeeeecc---eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCC-CCCeEEEEEEE
Q psy535           57 AKVTFTPTVQYLPF---RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQ-NHQGRYTCTPY  132 (460)
Q Consensus        57 p~~~~~~~~~~~~~---g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~C~~~  132 (460)
                      |.|...|....+.+   +..+.|.|.+.|.|.+ .++|++++..+......++. ..++.|.|.++.. +|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p-~i~W~k~~~~l~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~   79 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPP-TYRWLMNGTEIDDEPDSRYS-LVGGNLVISNPSKAKDAGRYQCLAS   79 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCC-EEEEEECCEECCCCCCCCEE-EECCEEEEecCCccCCCEEEEEEEE
Confidence            44555566555444   3579999999998766 89999999988533333433 4567899998874 89999999999


Q ss_pred             cCCCCc
Q psy535          133 NAHGTQ  138 (460)
Q Consensus       133 ~~~g~~  138 (460)
                      |..|..
T Consensus        80 N~~G~~   85 (91)
T cd04967          80 NIVGTV   85 (91)
T ss_pred             cCCCEE
Confidence            999865

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.31  E-value=1.7e-11  Score=81.42  Aligned_cols=70  Identities=31%  Similarity=0.723  Sum_probs=58.1

Q ss_pred             eEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-ecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          169 SVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       169 ~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      ++.|.|.+   .|.|.|.+.|++++....+..+..+ ..+.+.|.++..+|.|.|+|.|.|..|....+..|.|
T Consensus         1 ~v~l~C~~---~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEV---TGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEE---EEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            47899999   7999999999997665555555554 3557889999999999999999999999988887754

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.30  E-value=2.3e-11  Score=84.56  Aligned_cols=80  Identities=25%  Similarity=0.343  Sum_probs=60.1

Q ss_pred             eeeecceeeEEEEEEEecCC----CCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535           65 VQYLPFRLQGVVQCHIKANP----TFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS  140 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~  140 (460)
                      ...+.+|.++.|.|...+..    +.+.+.|+|++.++..  ..+. ...++.|.|.++..+|+|.|+|.+.|..+....
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~--~~~~-~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~   80 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG--DRKR-FVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY   80 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC--CccE-EecCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence            34577899999999875432    2347999999999863  2222 236778999999999999999999998877655


Q ss_pred             eeEEEEE
Q psy535          141 SGQMEVL  147 (460)
Q Consensus       141 ~~~~~v~  147 (460)
                      ....++.
T Consensus        81 ~~t~t~~   87 (92)
T cd05757          81 NVTRTIS   87 (92)
T ss_pred             EEEEEEE
Confidence            5444444

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.29  E-value=1.9e-11  Score=84.21  Aligned_cols=73  Identities=25%  Similarity=0.458  Sum_probs=53.6

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCe---ec--Cccc-cccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKR---LL--EPYQ-TKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM  144 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~---~~--~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~  144 (460)
                      |+++.|.|.+.|.|.+ .++|+|++.   .+  .+.. ..++.....+.|.|.++..+|+|.|+|.|.|..|.......|
T Consensus         1 G~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   79 (81)
T cd05765           1 GETASFHCDVTGRPPP-EITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL   79 (81)
T ss_pred             CCcEEEEeeccccCCC-cEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence            6789999999998876 799999732   11  1111 123334455689999999999999999999999986554443

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.29  E-value=5e-11  Score=83.23  Aligned_cols=85  Identities=24%  Similarity=0.461  Sum_probs=67.4

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec-------CeEEEeecCCCC-CeEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-------GSLLFTRVNQNH-QGRY  127 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~~d-~G~y  127 (460)
                      ||.+ .......+.+|++++|.|.+.+.|+|..|.|..++..+......++.+...       +.|.|.++...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            4544 455667788999999999999989888899999888776544456655442       369999998877 8999


Q ss_pred             EEEEEcCCCCccee
Q psy535          128 TCTPYNAHGTQGSS  141 (460)
Q Consensus       128 ~C~~~~~~g~~~~~  141 (460)
                      .|.|.|.+|.....
T Consensus        81 ~C~a~N~~G~d~~~   94 (98)
T cd05898          81 NCTAWNSFGSGTAI   94 (98)
T ss_pred             EEEEEeCCccceEE
Confidence            99999999987544

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.29  E-value=3.4e-11  Score=81.38  Aligned_cols=71  Identities=24%  Similarity=0.558  Sum_probs=58.9

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc----ccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPK----NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      |+.+.|.|.+   .|.|.|.+.|++++ ..+..    .+....++.|.|.++...|+|.|.|.|.|..|.......|.|
T Consensus         1 G~~v~l~C~~---~G~P~p~i~W~k~g-~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQV---EGIPTPNITWSING-APIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEe---eEeCCCeEEEEECC-EECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            6789999998   79999999999954 34322    245556778999999999999999999999999888877765

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.29  E-value=2.1e-11  Score=81.33  Aligned_cols=69  Identities=25%  Similarity=0.524  Sum_probs=54.9

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEEe--c-c--eEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKIV--G-G--NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~~--~-~--~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      +.|.|.+   .|.|.|.+.|++++..+.. ..++.+.  + +  +|.|.++..+|+|.|+|.|.|..|.......|.|
T Consensus         1 v~l~C~v---~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQI---SAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEE---EecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            4789999   8999999999995544332 3455442  1 2  6999999999999999999999999988877754

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.26  E-value=3.4e-11  Score=80.66  Aligned_cols=72  Identities=26%  Similarity=0.507  Sum_probs=59.9

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe-cceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      |+.+.|.|.+   .|.|.|.+.|++++..+....++... ++.|.|.++...|.|.|+|.|.|..|....+..|.|
T Consensus         1 G~~v~L~C~~---~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKP---KAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEee---eEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            6789999998   78999999999966555444555543 467999999999999999999999999888887754

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.26  E-value=3.3e-11  Score=84.87  Aligned_cols=76  Identities=21%  Similarity=0.403  Sum_probs=61.1

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe-----cceEEEccccceeceEEEEEEecccceeeeee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-----GGNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      .+..|+.+.|.|.+   .|.|.|.+.|++++.......++.+.     ...|.|.++...|+|.|+|.|.|..|.....+
T Consensus        12 ~v~~G~~v~L~C~v---~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   88 (92)
T cd05737          12 TIMEGKTLNLTCTV---FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV   88 (92)
T ss_pred             EEeCCCcEEEEEEE---EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence            67889999999999   79999999999965444333444332     12699999999999999999999999988777


Q ss_pred             EEEE
Q psy535          238 QLVV  241 (460)
Q Consensus       238 ~l~v  241 (460)
                      .+.|
T Consensus        89 ~v~v   92 (92)
T cd05737          89 TVSV   92 (92)
T ss_pred             EEeC
Confidence            6653

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.26  E-value=2e-11  Score=83.55  Aligned_cols=78  Identities=18%  Similarity=0.178  Sum_probs=58.4

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      .+....+.+|++++|.|.+.+..+...+.|+|+|..+...       ...+.|.|.+++.+|+|.|+|.+.+..+.. .+
T Consensus         5 ~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~-------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~-~s   76 (83)
T cd05753           5 QVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS-------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY-SS   76 (83)
T ss_pred             ECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc-------CCCceEEECccCHHHCEEEEEEEEeCCcee-cC
Confidence            3334568889999999998654444479999999876421       124579999999999999999999988754 45


Q ss_pred             eEEEEE
Q psy535          142 GQMEVL  147 (460)
Q Consensus       142 ~~~~v~  147 (460)
                      ..+.|.
T Consensus        77 ~~~~i~   82 (83)
T cd05753          77 EPVSIT   82 (83)
T ss_pred             CCEEEE
Confidence            555554

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.26  E-value=4.6e-11  Score=82.46  Aligned_cols=76  Identities=28%  Similarity=0.408  Sum_probs=61.7

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEEe----cceEEEccccceeceEEEEEEecccceeeeee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      .+..|+.+.|.|.+   .|.|.|.+.|++++..+.. ..++...    .+.|.|.++...|+|.|+|.|.|..|.....+
T Consensus         6 ~v~~G~~v~l~c~~---~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~   82 (86)
T cd05894           6 VVVAGNKLRLDVPI---SGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL   82 (86)
T ss_pred             EEEcCCEEEEEeeE---eecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence            57789999999999   8999999999995543332 2345443    24799999999999999999999999988887


Q ss_pred             EEEE
Q psy535          238 QLVV  241 (460)
Q Consensus       238 ~l~v  241 (460)
                      .|.|
T Consensus        83 ~l~V   86 (86)
T cd05894          83 FVKV   86 (86)
T ss_pred             EEEC
Confidence            7653

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.26  E-value=3.2e-11  Score=80.60  Aligned_cols=69  Identities=26%  Similarity=0.523  Sum_probs=55.1

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEEecc-----eEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKIVGG-----NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~-----~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      +.|.|.+   .|.|.|.+.|++++..+.. ..++.....     .|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus         1 v~l~C~v---~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRV---SGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEE---eEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            4799999   8999999999996554432 234554322     5899999999999999999999999988877754

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.26  E-value=1.2e-10  Score=81.92  Aligned_cols=81  Identities=32%  Similarity=0.534  Sum_probs=61.9

Q ss_pred             CCCcccccCCCCeEEEEeeeeccCCCCC-CeeEEEcCCCccC-C-cccEEEe-----cceEEEccccceeceEEEEEEec
Q psy535          157 KPEAMYQRKVGESVDMHCEAQEAEGTQK-PTITWQRRDGVAL-P-KNRVKIV-----GGNITIEGLRRVDFGYYECVVSN  228 (460)
Q Consensus       157 ~~~~~~~~~~g~~~~l~C~~~~~~~~p~-~~~~W~~~~~~~~-~-~~~~~~~-----~~~l~i~~~~~~~~g~y~C~a~n  228 (460)
                      .|... .+..|+.++|.|.+   .|.|. |.+.|++.++..+ . ..++...     .++|.|.++...|.|.|+|.|.|
T Consensus         6 ~p~~~-~v~~G~~v~l~C~v---~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N   81 (96)
T cd05865           6 VPSQG-EISVGESKFFLCQV---AGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSN   81 (96)
T ss_pred             eCCcc-EECCCCeEEEEEEE---eCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEc
Confidence            34444 57889999999999   78885 7999998555443 3 3344332     24799999999999999999999


Q ss_pred             cc-ceeeeeeEEEE
Q psy535          229 EV-ATIVQAAQLVV  241 (460)
Q Consensus       229 ~~-g~~~~~~~l~v  241 (460)
                      .. |....++.|.|
T Consensus        82 ~~~g~~~~s~~l~v   95 (96)
T cd05865          82 EDEGESEATVNVKI   95 (96)
T ss_pred             CCCCcEEEEEEEEE
Confidence            96 88888877765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.24  E-value=5.1e-11  Score=84.51  Aligned_cols=76  Identities=22%  Similarity=0.321  Sum_probs=61.5

Q ss_pred             ccCCCCeEEEEeeeeccCC-CCCCeeEEEcCCCccCC-cccEE-E--------ecceEEEccccceeceEEEEEEecccc
Q psy535          163 QRKVGESVDMHCEAQEAEG-TQKPTITWQRRDGVALP-KNRVK-I--------VGGNITIEGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~-~p~~~~~W~~~~~~~~~-~~~~~-~--------~~~~l~i~~~~~~~~g~y~C~a~n~~g  231 (460)
                      .+..|+.+.|.|.+   .| .|.|.+.|+++ +..+. ..... .        ....|.|.++..+|+|.|+|.|.|..|
T Consensus        14 ~v~~G~~v~L~c~v---~g~~P~p~v~W~Kd-g~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          14 FVNLGENLNLVVEV---EAYPPPPHINWTYD-NRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             EEECCCCEEEEEEE---EecCCCCccEEEeC-CeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            67889999999999   78 89999999995 44444 22221 1        135799999999999999999999999


Q ss_pred             eeeeeeEEEEe
Q psy535          232 TIVQAAQLVVE  242 (460)
Q Consensus       232 ~~~~~~~l~v~  242 (460)
                      .....+.|.|.
T Consensus        90 ~~~~t~~L~V~  100 (101)
T cd04975          90 SKSLTFELYVN  100 (101)
T ss_pred             cEEEEEEEEEE
Confidence            98888888764

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.24  E-value=4e-11  Score=83.17  Aligned_cols=77  Identities=22%  Similarity=0.288  Sum_probs=59.9

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      .|....+.+|++++|.|.+.+..+.+.+.|++++..+..    + ....++.|.|.+++.+|+|.|+|.|.|..|....+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~----~-~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~   81 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS----R-AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT   81 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC----c-ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence            456667888999999999976434458999998876532    1 12345789999999999999999999999887665


Q ss_pred             eE
Q psy535          142 GQ  143 (460)
Q Consensus       142 ~~  143 (460)
                      +.
T Consensus        82 ~~   83 (85)
T cd05754          82 AT   83 (85)
T ss_pred             EE
Confidence            44

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.24  E-value=7.1e-11  Score=79.56  Aligned_cols=71  Identities=30%  Similarity=0.550  Sum_probs=57.8

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc---c-cEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPK---N-RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~---~-~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      |+.+.|.|.+   .|.|.|.+.|+++ +..+..   . .....++.|.|.++...|.|.|+|.|.|..|...++..|.|
T Consensus         1 g~~~~l~C~a---~G~P~P~i~W~k~-g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRA---NGNPKPSISWLTN-GVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEe---eEeCCCeEEEEEC-CEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            6789999999   8999999999995 444421   1 22334557899999999999999999999999998888766

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.24  E-value=7e-11  Score=77.59  Aligned_cols=68  Identities=21%  Similarity=0.445  Sum_probs=53.2

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      |+.++|.|.+   .|.|.|.+.|++++..+....+.......|.|.++.  |.|.|+|.|.|..|....+..|
T Consensus         1 G~~v~L~C~a---~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVA---VGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEe---eecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            6789999999   899999999999655443333444444568888874  6899999999999998777654

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.24  E-value=3.7e-11  Score=81.27  Aligned_cols=68  Identities=15%  Similarity=0.332  Sum_probs=49.6

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCcccc--ccEEEe---ecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQT--KDIVVM---QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      +.|.|.+.+.++.+.++|+++|..+.....  .++...   ..+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~   73 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVT   73 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEE
Confidence            479999875444447999999998853221  222222   22469999999999999999999999876544

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.24  E-value=2.3e-10  Score=87.65  Aligned_cols=111  Identities=21%  Similarity=0.366  Sum_probs=74.5

Q ss_pred             eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCC-CeeEEE
Q psy535          113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQK-PTITWQ  190 (460)
Q Consensus       113 ~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~-~~~~W~  190 (460)
                      +|.|.+++.+|+|.|+|.+.+..+..  ...+.|.|..+|.+.+.+... ....|..++|.|.+   .+ .|. +.+.|+
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~--~~~~~l~v~~~P~v~~~~~~~-~~~~~~~~~L~C~a---~g~~P~~~~i~W~   75 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQA--QQIIQLSVSEPPRVRLSLEKL-VSMIEEPQTLICHI---AGYYPLDVQVEWT   75 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcce--eeEEEEEEecCCceEEeCCCc-eeecCCcEEEEEEE---CCCCCCCeEEEEE
Confidence            58999999999999999998876664  455666777899988777654 33468889999999   55 454 489999


Q ss_pred             cCCCccCC----cccE-----E-Eecc------eEEEccccceeceEEEEEEecc
Q psy535          191 RRDGVALP----KNRV-----K-IVGG------NITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       191 ~~~~~~~~----~~~~-----~-~~~~------~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      +++.....    ....     . ..++      .|.+..-...+...|.|.+.+.
T Consensus        76 ~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~  130 (139)
T cd05771          76 REPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV  130 (139)
T ss_pred             ECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence            96532110    0111     1 1122      3444433333456899998764

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.23  E-value=8.7e-11  Score=82.21  Aligned_cols=84  Identities=18%  Similarity=0.215  Sum_probs=61.3

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccc--cccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQ--TKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                      +|....+.+|+++.|.|.+.+ |.+ .+.|++++..+....  ..++.. ..+.|.|.+++.+|+|.|+|.|.+..+. .
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~~-~i~W~k~~~~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~~~~~~-~   77 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NLA-SVVWLFQGGPLQRKEEPEERLLV-TEDGLLIRSVSPADAGVYTCQSVEHGFK-Q   77 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CCc-eEEEEECCcccccccCcCceEEE-cCCCEEEccCCHHHCEEEEEEEecCccc-e
Confidence            355667888999999999876 554 799999998775432  123333 3456999999999999999999876543 3


Q ss_pred             eeeEEEEEee
Q psy535          140 SSGQMEVLVR  149 (460)
Q Consensus       140 ~~~~~~v~v~  149 (460)
                      ....+.|.|.
T Consensus        78 ~~~~~~l~V~   87 (89)
T cd04979          78 TLATYSLNVL   87 (89)
T ss_pred             eEeEEEEEEe
Confidence            5556666653

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.23  E-value=7.7e-11  Score=78.00  Aligned_cols=68  Identities=37%  Similarity=0.675  Sum_probs=55.0

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-ecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      ++|.|.+   .|.|.|.+.|+++++. ++..+... .+..|.|.++..+|+|.|+|.|.|..|.......|.|
T Consensus         1 v~l~C~~---~g~P~p~v~W~k~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEV---GGDPVPTVLWRKEDGE-LPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEEC---ccCCCCEEEEEECCcc-CCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            4789998   8999999999996543 34444443 4568999999999999999999999999887776653

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.23  E-value=1.4e-10  Score=81.26  Aligned_cols=75  Identities=35%  Similarity=0.683  Sum_probs=61.6

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccC--------CcccEEEe-cceEEEccccceeceEEEEEEecccceeeeee
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVAL--------PKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--------~~~~~~~~-~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      |+.+.|.|.+   .+.|.|.+.|++++....        ...++... ++.|.|.++..+|.|.|.|.|.|..|......
T Consensus         1 G~~v~L~C~~---~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEA---TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEEC---CccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            6789999998   899999999999655321        23344443 56899999999999999999999999999999


Q ss_pred             EEEEecC
Q psy535          238 QLVVEGT  244 (460)
Q Consensus       238 ~l~v~~~  244 (460)
                      .|.|...
T Consensus        78 ~l~V~~~   84 (90)
T cd05726          78 YLEVTDV   84 (90)
T ss_pred             EEEEeec
Confidence            9988764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.23  E-value=4e-11  Score=82.88  Aligned_cols=74  Identities=16%  Similarity=0.170  Sum_probs=55.6

Q ss_pred             eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccc-cEEEeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTK-DIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      ....+.+|+.+.|.|....+.+.+.|.|++++.++....+. ++....+|.|.|.+++.+|+|.|+|.|.|..+.
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence            33557789999999977554344589999998765322233 344444799999999999999999999987644

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.23  E-value=6.1e-11  Score=80.22  Aligned_cols=67  Identities=22%  Similarity=0.448  Sum_probs=51.0

Q ss_pred             EEEEEEEec-CCCCCeEEEeeCCeecCccccccEE-Ee---ecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           74 GVVQCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIV-VM---QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        74 ~~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~-~~---~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      +.|.|.+.+ .|.+ .+.|+|++.++......... ..   ..+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus         1 ~~l~C~~~g~~P~p-~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   72 (75)
T cd05750           1 LVLKCEATSEYPSL-RFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVT   72 (75)
T ss_pred             CEEEEEccCCCCCc-eEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence            368999999 6665 89999999988643322211 11   23479999999999999999999999986544

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.22  E-value=5.6e-11  Score=78.78  Aligned_cols=69  Identities=25%  Similarity=0.438  Sum_probs=55.5

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      +.|.|.+   .|.|.|.+.|++++..+....+......+|.|.++...|+|.|+|.|.|..|.......+.+
T Consensus         1 ~~l~c~v---~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           1 VRLPVKV---KAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             CEEEeEE---EEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            4689999   79999999999955444344444455678999999999999999999999998777766654

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>KOG3515|consensus

Probab=99.22  E-value=2.4e-10  Score=106.66  Aligned_cols=318  Identities=15%  Similarity=0.159  Sum_probs=174.7

Q ss_pred             ceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEec-CCCCCe
Q psy535           10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA-NPTFQY   88 (460)
Q Consensus        10 ~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~   88 (460)
                      +|+....+.+|.......+.-+.|.|++.|..+........+.|..+|.-...........+..+.+.|.+.. ..+...
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~n  130 (741)
T KOG3515|consen   51 GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPN  130 (741)
T ss_pred             cccccccCCceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcc
Confidence            4444445557778888888889999999999777667778888888776443333444556778899995543 344457


Q ss_pred             EEEeeCCeecCccccccEEE---------eecCeEEEeecCCCCCeEEEEEEEcCCCCcc-eeeEEEEEeeCCC--ceee
Q psy535           89 VTWTKDKRLLEPYQTKDIVV---------MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG-SSGQMEVLVRKPP--AFTI  156 (460)
Q Consensus        89 v~W~~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~-~~~~~~v~v~~~p--~~~~  156 (460)
                      +.|..+.............+         .....|.+...+.+|.|.|+|.|.+...... ....+.+.+..+.  ....
T Consensus       131 lrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~  210 (741)
T KOG3515|consen  131 LRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGIT  210 (741)
T ss_pred             eeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceec
Confidence            99999876543222111100         2234588888899999999999988422111 2223333333322  2222


Q ss_pred             CCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecc------eEEEccccceeceEEEEEEeccc
Q psy535          157 KPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGG------NITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       157 ~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~------~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      ..........|+.+.|.|.+.  .+.|.+.+.|++++.............+      .+.+..-.....-...|.+.| .
T Consensus       211 ~~~~~qsF~~g~~inlvc~~~--gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~  287 (741)
T KOG3515|consen  211 GAQEQQSFTEGQTINLVCNAQ--GGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-L  287 (741)
T ss_pred             chhhcCcccccceEEEEehhh--cCCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-c
Confidence            233334678999999999774  8999999999985543332211111111      122222222233456799988 2


Q ss_pred             ceeeeeeEEEEecCCCCCCCc--eeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe-eee--ec---cCCCCc
Q psy535          231 ATIVQAAQLVVEGTQPHAPYN--ITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-LPI--PV---TPPGST  302 (460)
Q Consensus       231 g~~~~~~~l~v~~~~p~~p~~--~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~---~~~~~~  302 (460)
                      +.  .+..+.+...+...+..  ......+.+..+.|...... ++   ..+.|+++.....- ...  ..   ......
T Consensus       288 ~~--~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~-p~---~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~  361 (741)
T KOG3515|consen  288 LA--ASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSK-PP---AHIAWYKDTKMPKGSQKASSKTSNMGGVAVI  361 (741)
T ss_pred             cc--cceeeecccccccccccCcccccccccccccceeccCCC-Cc---cceeeeccCcccccccCcccCCCcccceeeE
Confidence            22  12222222211111111  11233445566666532222 22   22455553321100 000  00   001122


Q ss_pred             eEEEccCccCccEEEEEEEEcCCCCCCCCCcEEE
Q psy535          303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVV  336 (460)
Q Consensus       303 ~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~  336 (460)
                      .+.+......+.+.|.|.|-|..+....+..+.+
T Consensus       362 ~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l  395 (741)
T KOG3515|consen  362 SHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLL  395 (741)
T ss_pred             EeeecccchhcCceEEccccccccccccccceec
Confidence            3445556677899999999988755444444433

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.22  E-value=9.4e-11  Score=79.50  Aligned_cols=72  Identities=31%  Similarity=0.518  Sum_probs=58.4

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc---cEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN---RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      |+.+.|.|.+   .|.|.|.+.|++++.......   ......+.|.|.++...|.|.|+|.|.|..|.......|.|
T Consensus         1 G~~~~l~C~~---~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEA---EGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEc---eeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            6889999998   799999999998554333222   23344678999999999999999999999999988887765

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.21  E-value=8.6e-11  Score=78.05  Aligned_cols=69  Identities=23%  Similarity=0.434  Sum_probs=55.5

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCccc-EEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNR-VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      +.|.|.+   .|.|.|.+.|++++........ ......+|.|.++...|.|.|+|.|.|..|....+..|.|
T Consensus         1 ~~L~C~~---~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIA---EGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEe---eEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4689999   8999999999996654433222 2224568999999999999999999999999888887765

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.21  E-value=1.8e-10  Score=81.91  Aligned_cols=77  Identities=25%  Similarity=0.494  Sum_probs=62.0

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-ccEEEe--cceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      .+..|+.+.|.|.+   .|.|.|.+.|++++...... .+....  ...|.|.++...|.|.|+|.|.|..|.....+.|
T Consensus        14 ~~~~G~~v~L~C~~---~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L   90 (95)
T cd05730          14 TANLGQSVTLACDA---DGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL   90 (95)
T ss_pred             EEeCCCCEEEEEec---cEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence            57889999999999   79999999999954433222 233322  3469999999999999999999999999888888


Q ss_pred             EEe
Q psy535          240 VVE  242 (460)
Q Consensus       240 ~v~  242 (460)
                      .|.
T Consensus        91 ~V~   93 (95)
T cd05730          91 KVF   93 (95)
T ss_pred             EEE
Confidence            775

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.21  E-value=7.5e-11  Score=76.24  Aligned_cols=65  Identities=18%  Similarity=0.343  Sum_probs=52.6

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      ++|.|.+   .|.|.|.+.|++ ++..+...   .....|.|.++..+|+|.|+|.|.|..|....+..+.+
T Consensus         1 ~~l~c~v---~g~P~P~v~W~k-dg~~l~~~---~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKV---AAYPPPEFQWYK-DGKLISGK---HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             CEEEEEE---EEeCCCEEEEEE-CCEECccc---CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            4789999   899999999999 45455321   23568999999999999999999999997777666654

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.21  E-value=5.9e-11  Score=78.41  Aligned_cols=67  Identities=30%  Similarity=0.562  Sum_probs=54.8

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe-cceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      +.|.|.+   .|.|.|.+.|++++..+....++.+. ++.|.|.++...|.|.|+|.|.|..|....+..|
T Consensus         1 v~L~C~~---~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSA---QGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecc---eEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            4789998   79999999999955444444455543 6689999999999999999999999998877665

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.21  E-value=1.7e-10  Score=78.48  Aligned_cols=74  Identities=20%  Similarity=0.380  Sum_probs=59.3

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV  240 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~  240 (460)
                      .+..|+.+.|.|.+   .+. .+.+.|++++..+....+....+..|.|.++..+|+|.|+|.|.|..|.....+.+.
T Consensus         5 ~~~~G~~v~l~C~~---~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~   78 (79)
T cd04973           5 SAHPGDLLQLRCRL---RDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN   78 (79)
T ss_pred             EecCCCCEEEEEEe---cCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence            57789999999998   554 568999996544444456666777899999999999999999999988876665554

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.21  E-value=7.1e-11  Score=81.62  Aligned_cols=76  Identities=14%  Similarity=0.186  Sum_probs=54.1

Q ss_pred             eeeEEEEEEEecCC-CCCeEEEeeCCeecCccccc--cEE----EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535           71 RLQGVVQCHIKANP-TFQYVTWTKDKRLLEPYQTK--DIV----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ  143 (460)
Q Consensus        71 g~~~~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~--~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~  143 (460)
                      |+++.|.|.+.+.+ +++.++|++++..+......  +..    ....+.|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            67899999999983 33479999987654321100  000    112347999999999999999999999988766665


Q ss_pred             EEE
Q psy535          144 MEV  146 (460)
Q Consensus       144 ~~v  146 (460)
                      +.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            543

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.20  E-value=1.1e-10  Score=81.67  Aligned_cols=69  Identities=13%  Similarity=0.308  Sum_probs=51.8

Q ss_pred             eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCc------cccccEEEee----cCeEEEeecCCCCCeEEEEEEEc
Q psy535           64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP------YQTKDIVVMQ----NGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~------~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      .+..+.+|+++.|.|.+.+.|.+ .+.|++++..+..      ....++.+..    +.+|.|.++..+|+|.|+|.+..
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~-~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNS-SLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCC-eEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            45678899999999999998765 7999998764311      0123333221    34799999999999999999976

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.20  E-value=1.8e-10  Score=83.56  Aligned_cols=91  Identities=20%  Similarity=0.375  Sum_probs=66.4

Q ss_pred             eCCCceeeCCCccccc---CCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC--cccEEE--------ecceEEEcccc
Q psy535          149 RKPPAFTIKPEAMYQR---KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--KNRVKI--------VGGNITIEGLR  215 (460)
Q Consensus       149 ~~~p~~~~~~~~~~~~---~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~--~~~~~~--------~~~~l~i~~~~  215 (460)
                      .++|.+...|.....+   ..|..++|.|.+   .|.|.+.+.|++++ ..+.  ..++..        ..+.|.|.++.
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a---~G~P~p~i~W~k~g-~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~   77 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQA---QGVPRVQFRWAKNG-VPLDLGNPRYEETTEHTGTVHTSILTIINVS   77 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEEC---cccCCCEEEEEECC-EECCCCCCeEEEEeeccCccceeEEEECcCC
Confidence            3466666555532222   356899999999   79999999999954 4443  223321        13468999987


Q ss_pred             -ceeceEEEEEEecccceeeeeeEEEEec
Q psy535          216 -RVDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       216 -~~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                       ..|.|.|+|.|.|..|.....+.|.+..
T Consensus        78 ~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~  106 (109)
T cd05773          78 AALDYALFTCTAHNSLGEDSLDIQLVSTS  106 (109)
T ss_pred             ccCCCEEEEEEEEeCCccCcEEEEEEecC
Confidence             5899999999999999998888888764

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.19  E-value=1.8e-10  Score=80.77  Aligned_cols=76  Identities=17%  Similarity=0.281  Sum_probs=60.6

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE----ecceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI----VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ  238 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~  238 (460)
                      .+..|+.+.|.|.+   .|.|.|.+.|++++...........    ....|.|.++...|.|.|+|.|.|..|.....+.
T Consensus        11 ~v~~G~~v~l~C~~---~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~   87 (90)
T cd04972          11 VVYEGGTATIRCTA---EGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQ   87 (90)
T ss_pred             EEcCCCcEEEEEEE---EEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEE
Confidence            57899999999999   7999999999996544333222111    2347999999999999999999999999888877


Q ss_pred             EEE
Q psy535          239 LVV  241 (460)
Q Consensus       239 l~v  241 (460)
                      |.|
T Consensus        88 L~v   90 (90)
T cd04972          88 VTV   90 (90)
T ss_pred             EeC
Confidence            653

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.19  E-value=1.3e-10  Score=82.56  Aligned_cols=77  Identities=17%  Similarity=0.232  Sum_probs=61.6

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE----------ecceEEEccccceeceEEEEEEecccce
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI----------VGGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      .+..|+.+.|.|.+   .|.|.|.+.|++++..+....+...          ...+|.|.++..+|+|.|+|.|.|..|.
T Consensus        14 ~~~~~~~~~l~~~v---~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~   90 (101)
T cd05859          14 FANLHEVKEFVVEV---EAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV   90 (101)
T ss_pred             EEecCCcEEEEEEE---EEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence            67789999999999   8999999999995443333322211          1247999999999999999999999999


Q ss_pred             eeeeeEEEEe
Q psy535          233 IVQAAQLVVE  242 (460)
Q Consensus       233 ~~~~~~l~v~  242 (460)
                      ...++.|.|.
T Consensus        91 ~~~t~~l~V~  100 (101)
T cd05859          91 KSYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            9888887764

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.19  E-value=1.3e-10  Score=81.90  Aligned_cols=85  Identities=35%  Similarity=0.612  Sum_probs=67.1

Q ss_pred             ceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cceEEEccccceeceEEEEEEec
Q psy535          153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSN  228 (460)
Q Consensus       153 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n  228 (460)
                      .+...+... .+..|+.+.|.|.+   .+.|.+.+.|++++..+....+....    ...|.|.++...|.|.|+|.+.|
T Consensus         2 ~~~~~~~~~-~v~~G~~~~l~c~~---~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n   77 (90)
T PF07679_consen    2 VFTKKPKDV-TVKEGESVTLECEV---SGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASN   77 (90)
T ss_dssp             EEEEESSEE-EEETTSEEEEEEEE---EESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEE
T ss_pred             EEEEecCCE-EEeCCCEEEEEEEE---EeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEE
Confidence            344455444 78899999999999   67799999999965444444455443    34699999999999999999999


Q ss_pred             ccceeeeeeEEEE
Q psy535          229 EVATIVQAAQLVV  241 (460)
Q Consensus       229 ~~g~~~~~~~l~v  241 (460)
                      ..|.....+.|.|
T Consensus        78 ~~g~~~~~~~l~V   90 (90)
T PF07679_consen   78 SSGEATASVNLTV   90 (90)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEC
Confidence            9999888887764

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.19  E-value=1.1e-10  Score=76.52  Aligned_cols=68  Identities=21%  Similarity=0.316  Sum_probs=52.7

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      +.|.|.+   .|.|.|.+.|++++. .+........+..|.|.++...|.|.|+|.|.|..|.......+.+
T Consensus         1 ~~~~c~v---~G~P~P~v~W~k~g~-~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKY---YGYPPPEVKWYKNGQ-LIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEE---EEeCCCEEEEEECCE-ECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            3688999   899999999999544 4433322223457999999999999999999999997766665544

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.18  E-value=2.5e-10  Score=78.50  Aligned_cols=78  Identities=17%  Similarity=0.313  Sum_probs=54.3

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCeecCccccc--cEEE---eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTK--DIVV---MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~--~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      |++++|.|.+.+.|.+ .+.|+++++........  +...   .....|.|.+++.+|+|.|+|.|.|..+....+..+.
T Consensus         1 Ge~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQGNEVV-DFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEECCCcc-EEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            6789999999997765 79999877543211000  1111   1134799999999999999999998766444566666


Q ss_pred             EEee
Q psy535          146 VLVR  149 (460)
Q Consensus       146 v~v~  149 (460)
                      |.|.
T Consensus        80 i~V~   83 (84)
T cd05861          80 ITVH   83 (84)
T ss_pred             EEEe
Confidence            6653

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.17  E-value=1.9e-10  Score=77.15  Aligned_cols=69  Identities=23%  Similarity=0.494  Sum_probs=54.0

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEEe-c--c--eEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKIV-G--G--NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~~-~--~--~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      ++|.|.+   .|.|.|.+.|++++..+.. ..++.+. .  +  .|.|.++...|.|.|+|.|.|..|.......|.|
T Consensus         1 v~L~C~v---~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRV---SAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEE---eecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            4799999   8999999999995543332 2344432 1  1  5999999999999999999999999888877653

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.17  E-value=2.3e-10  Score=77.00  Aligned_cols=70  Identities=24%  Similarity=0.385  Sum_probs=56.5

Q ss_pred             eEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          169 SVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       169 ~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      .+.|.|.+   .|.|.|.+.|++++..+....+..+.    ...|.|.++...|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~~l~c~~---~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPI---SGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeE---eeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            36899999   89999999999965544344444443    346999999999999999999999999888877654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.16  E-value=2.8e-10  Score=79.07  Aligned_cols=76  Identities=28%  Similarity=0.494  Sum_probs=59.8

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccE---EE--ecceEEEccccceeceEEEEEEecccceeeeee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV---KI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~---~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      .+..|+.+.|.|.+   .|.|.|.+.|++++..+....+.   ..  ....|.|.++...|+|.|+|.|.|..|....++
T Consensus         5 ~v~~G~~~~L~C~~---~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   81 (85)
T cd05857           5 AVPAANTVKFRCPA---AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   81 (85)
T ss_pred             EcCCCCEEEEEEEc---CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEE
Confidence            57789999999998   78899999999955443332221   11  234688999999999999999999999988887


Q ss_pred             EEEE
Q psy535          238 QLVV  241 (460)
Q Consensus       238 ~l~v  241 (460)
                      .|.|
T Consensus        82 ~l~v   85 (85)
T cd05857          82 HLDV   85 (85)
T ss_pred             EEEC
Confidence            7654

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.16  E-value=5.5e-10  Score=78.66  Aligned_cols=67  Identities=28%  Similarity=0.549  Sum_probs=53.1

Q ss_pred             CCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc--ccEEEecceEEEcccc-ceeceEEEEEEecccceeee
Q psy535          166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK--NRVKIVGGNITIEGLR-RVDFGYYECVVSNEVATIVQ  235 (460)
Q Consensus       166 ~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~--~~~~~~~~~l~i~~~~-~~~~g~y~C~a~n~~g~~~~  235 (460)
                      .|+.+.|.|.+   .|.|.|.+.|++++..+...  .++...++.|.|.++. ..|.|.|+|.|.|..|...+
T Consensus        18 ~g~~v~l~C~~---~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S   87 (94)
T cd05848          18 DEKKVILNCEA---RGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILS   87 (94)
T ss_pred             CCCEEEEEEEe---eecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence            47899999999   89999999999955433222  2445567789998875 68999999999999998643

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.16  E-value=4e-10  Score=80.22  Aligned_cols=87  Identities=24%  Similarity=0.420  Sum_probs=63.4

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-----ccEEEe----cceEEEccccceeceE
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-----NRVKIV----GGNITIEGLRRVDFGY  221 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-----~~~~~~----~~~l~i~~~~~~~~g~  221 (460)
                      .|.+...+... .+..|+.++|.|.+   .|.|.|.+.|++++......     .++...    .+.|.|.++...|.|.
T Consensus         2 ~p~i~~~~~~~-~~~~g~~v~l~C~~---~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~   77 (97)
T cd05869           2 KPKITYVENQT-AMELEEQITLTCEA---SGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGE   77 (97)
T ss_pred             CceEEEccCce-EEEcCCCEEEEEEe---eEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEE
Confidence            35555455443 34568999999999   79999999999954322211     122222    2479999999999999


Q ss_pred             EEEEEecccceeeeeeEEEE
Q psy535          222 YECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       222 y~C~a~n~~g~~~~~~~l~v  241 (460)
                      |+|.|.|..|....++.|.|
T Consensus        78 Y~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          78 YLCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEEecCCCCeeEEEEEEC
Confidence            99999999999888877653

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.16  E-value=3.5e-10  Score=80.70  Aligned_cols=75  Identities=23%  Similarity=0.511  Sum_probs=59.4

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCC-CccCC------cccEEEe----cceEEEccccceeceEEEEEEecccc
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRD-GVALP------KNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~-~~~~~------~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g  231 (460)
                      .+..|+.++|.|.+   .|.|.|.+.|++.+ +..+.      ..++...    ...|.|.++..+|.|.|.|.|.|..|
T Consensus        12 ~~~~G~~v~l~C~~---~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   88 (98)
T cd05870          12 TTVENGAATLSCKA---EGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIG   88 (98)
T ss_pred             EEcCCCcEEEEEec---ccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCC
Confidence            67899999999998   79999999999843 22221      2244432    24799999999999999999999999


Q ss_pred             eeeeeeEEE
Q psy535          232 TIVQAAQLV  240 (460)
Q Consensus       232 ~~~~~~~l~  240 (460)
                      ....++.|.
T Consensus        89 ~~~~~~~l~   97 (98)
T cd05870          89 GHQKSMYLD   97 (98)
T ss_pred             cceeEEEEe
Confidence            988777664

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.16  E-value=4.2e-10  Score=77.46  Aligned_cols=72  Identities=25%  Similarity=0.462  Sum_probs=57.0

Q ss_pred             CeEEEEeeeeccCCCCCC--eeEEEcCCCccCCc----ccE---EE--ecceEEEccccceeceEEEEEEecccceeeee
Q psy535          168 ESVDMHCEAQEAEGTQKP--TITWQRRDGVALPK----NRV---KI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQA  236 (460)
Q Consensus       168 ~~~~l~C~~~~~~~~p~~--~~~W~~~~~~~~~~----~~~---~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  236 (460)
                      ++++|.|.+   .|.|.|  .+.|++++ ..+..    .++   ..  ..+.|.|.+++..|+|.|+|.|.|..|...++
T Consensus         1 ~~~~L~C~a---~g~P~p~~~v~W~~~g-~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~   76 (85)
T cd05854           1 ENLTLQCHA---SHDPTMDLTFTWSLDD-FPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS   76 (85)
T ss_pred             CcEEEEEEE---ecCCCCCeEEEEEECC-eEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence            468999999   788877  68999954 33321    122   11  24689999999999999999999999999999


Q ss_pred             eEEEEec
Q psy535          237 AQLVVEG  243 (460)
Q Consensus       237 ~~l~v~~  243 (460)
                      ..|.|.+
T Consensus        77 ~~L~V~~   83 (85)
T cd05854          77 ATLVVRG   83 (85)
T ss_pred             EEEEEEC
Confidence            9999986

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.15  E-value=4e-10  Score=75.82  Aligned_cols=72  Identities=25%  Similarity=0.518  Sum_probs=57.6

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-ccEE-EecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRVK-IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~~~~-~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      |+.+.|.|.+   .|.|.|.+.|++.++..+.. .+.. ...++|.|..+...|.|.|+|.|.|..|..+..+.|.|
T Consensus         1 G~~~~l~C~~---~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKA---RGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEc---cCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            6789999998   78999999999755555433 2222 24568999999999999999999999999877776653

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.15  E-value=3.8e-10  Score=81.45  Aligned_cols=87  Identities=28%  Similarity=0.544  Sum_probs=59.8

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-----cc-cEEEecceEEEc-----cccceec
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-----KN-RVKIVGGNITIE-----GLRRVDF  219 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-----~~-~~~~~~~~l~i~-----~~~~~~~  219 (460)
                      ||.+...|... .+..|+.+.|.|.+   .|.|.|.+.|++++..+..     .. .....++.+.+.     .+...|.
T Consensus         1 ~P~i~~~p~~~-~v~~G~~~~l~C~~---~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~   76 (100)
T cd07693           1 PPRIVEHPSDL-IVSKGDPATLNCKA---EGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDE   76 (100)
T ss_pred             CCeEEecCcee-EEcCCCeEEEEeeC---CcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcC
Confidence            46666667665 68899999999998   7999999999995543322     11 112223333222     2368899


Q ss_pred             eEEEEEEecccce-eeeeeEEEE
Q psy535          220 GYYECVVSNEVAT-IVQAAQLVV  241 (460)
Q Consensus       220 g~y~C~a~n~~g~-~~~~~~l~v  241 (460)
                      |.|+|.|.|..|. .+....|.|
T Consensus        77 G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          77 GVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEEEEccccceecceEEEEe
Confidence            9999999999998 455555544

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.14  E-value=4.2e-10  Score=76.44  Aligned_cols=75  Identities=23%  Similarity=0.468  Sum_probs=58.4

Q ss_pred             CeEEEEeeeeccCCCCCCeeEEEcCCCccCC----cccEEE-----ecceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535          168 ESVDMHCEAQEAEGTQKPTITWQRRDGVALP----KNRVKI-----VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ  238 (460)
Q Consensus       168 ~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~----~~~~~~-----~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~  238 (460)
                      +.+.|.|.+.. .+.+.+.+.|++++ ..+.    ..++..     ..+.|.|.+++..|+|.|+|.|.|..+...++..
T Consensus         1 ~~~~l~C~v~~-d~~l~~~~~W~~dg-~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~   78 (85)
T cd05853           1 ESIVLPCQVSH-DHSLDIVFTWSFNG-HLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD   78 (85)
T ss_pred             CcEEEEEEecc-CCCCCcEEEEEECC-EECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence            36889999842 14567899999954 4443    123433     3457999999999999999999999999999999


Q ss_pred             EEEecC
Q psy535          239 LVVEGT  244 (460)
Q Consensus       239 l~v~~~  244 (460)
                      |.|.++
T Consensus        79 L~V~~p   84 (85)
T cd05853          79 LIVRGP   84 (85)
T ss_pred             EEEecC
Confidence            999864

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.14  E-value=3.7e-10  Score=79.27  Aligned_cols=76  Identities=20%  Similarity=0.357  Sum_probs=61.4

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE--ec---ceEEEccccceeceEEEEEEecccceeeeee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI--VG---GNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~--~~---~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      .+..|+.+.|.|.+   .+.|.|.+.|++++.......++..  ..   .+|.|.++..+|.|.|+|.|.|..|....++
T Consensus        12 ~v~eG~~v~L~C~v---~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   88 (92)
T cd05891          12 TIMEGKTLNLTCTV---FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDV   88 (92)
T ss_pred             EEcCCCEEEEEEEE---EEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEE
Confidence            67899999999998   7889999999996655444333332  22   2689999999999999999999999988887


Q ss_pred             EEEE
Q psy535          238 QLVV  241 (460)
Q Consensus       238 ~l~v  241 (460)
                      .+.|
T Consensus        89 ~v~~   92 (92)
T cd05891          89 TVSV   92 (92)
T ss_pred             EEEC
Confidence            7654

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.13  E-value=9.6e-10  Score=76.69  Aligned_cols=74  Identities=30%  Similarity=0.507  Sum_probs=58.3

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe--cceEEEccccceeceEEEEEEecccceeee-eeEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQ-AAQL  239 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~-~~~l  239 (460)
                      .+..|+.++|.|.+   .|. .|.+.|++++. .+...++...  +..|.|.++..+|.|.|+|.|.|..|...+ .+.|
T Consensus        14 ~v~~g~~v~l~C~a---~g~-~p~i~W~kng~-~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L   88 (91)
T cd05740          14 PPEDNQPVTLTCEA---EGQ-ATYIWWVNNGS-LLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL   88 (91)
T ss_pred             ccccCCcEEEEEEe---CCC-CCEEEEEECCE-ECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence            67899999999999   788 99999999544 4444444443  458999999999999999999999997543 4455


Q ss_pred             EE
Q psy535          240 VV  241 (460)
Q Consensus       240 ~v  241 (460)
                      .|
T Consensus        89 ~V   90 (91)
T cd05740          89 NV   90 (91)
T ss_pred             Ee
Confidence            44

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.13  E-value=4.5e-10  Score=76.25  Aligned_cols=70  Identities=30%  Similarity=0.525  Sum_probs=55.7

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      |+.+.|.|.+   .|.|.|.+.|+++++......++...    ...|.|.++..+|.|.|+|.|.|..|.......+
T Consensus         1 G~~v~l~C~~---~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~   74 (78)
T cd05743           1 GETVEFTCVA---TGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG   74 (78)
T ss_pred             CCEEEEEEEE---EEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence            6789999999   79999999999865544444444432    2479999999999999999999999987655544

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.13  E-value=5.8e-10  Score=78.14  Aligned_cols=66  Identities=27%  Similarity=0.503  Sum_probs=53.2

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccC-CcccEEEecceEEEcccc-ceeceEEEEEEecccceeee
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIVGGNITIEGLR-RVDFGYYECVVSNEVATIVQ  235 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~-~~~~~~~~~~~l~i~~~~-~~~~g~y~C~a~n~~g~~~~  235 (460)
                      +..+.|.|.+   .|.|.|.+.|++++.... ...+....++.|.|.++. ..|.|.|.|.|.|..|...+
T Consensus        19 ~~~v~l~C~a---~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   86 (93)
T cd05849          19 EGKVSVNCRA---RANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRS   86 (93)
T ss_pred             CCeEEEeCcC---ccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence            5579999999   899999999999554332 234566667899999885 68999999999999998643

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.11  E-value=2.6e-10  Score=78.70  Aligned_cols=72  Identities=19%  Similarity=0.257  Sum_probs=60.1

Q ss_pred             ceeeeecceeeEEEEEE-EecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCe-EEEEEEEcCCC
Q psy535           63 PTVQYLPFRLQGVVQCH-IKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQG-RYTCTPYNAHG  136 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~-~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~g  136 (460)
                      .....+.+|+++.|.|. ..|.|.+ .|.|++++..... ...|+.+..+|.|.|.++..+|+| .|.|.|.|...
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P-~i~W~~~~~~~i~-~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPL-RIYWMNSDLLHIT-QDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCC-EEEEECCCCcccc-ccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence            45677889999999997 5787776 8999998766443 467888888899999999999999 79999998753

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.11  E-value=1.1e-09  Score=77.12  Aligned_cols=67  Identities=28%  Similarity=0.545  Sum_probs=52.6

Q ss_pred             CCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--CcccEEEecceEEEcccc-ceeceEEEEEEecccceeee
Q psy535          166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--PKNRVKIVGGNITIEGLR-RVDFGYYECVVSNEVATIVQ  235 (460)
Q Consensus       166 ~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--~~~~~~~~~~~l~i~~~~-~~~~g~y~C~a~n~~g~~~~  235 (460)
                      .|+.++|.|.+   .|.|.|.+.|++++..+.  ...++...++.|.|.++. ..|.|.|+|.|.|..|...+
T Consensus        18 ~g~~v~l~C~a---~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   87 (94)
T cd05850          18 PEEKVTLGCRA---RASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVS   87 (94)
T ss_pred             CCCeEEEEeEc---eeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence            35789999999   799999999999554332  133555667889998765 58999999999999998644

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.11  E-value=7.6e-10  Score=77.01  Aligned_cols=74  Identities=27%  Similarity=0.448  Sum_probs=57.6

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC-CcccEEEe-cc---eEEEccccceeceEEEEEEeccccee-eee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIV-GG---NITIEGLRRVDFGYYECVVSNEVATI-VQA  236 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~-~~~~~~~~-~~---~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~  236 (460)
                      .+..|+.+.|.|.+   .|.|. .+.|++.++..+ ...++... ++   .|.|.++..+|+|.|+|.|.|..|.. ..+
T Consensus        11 ~v~~G~~v~l~C~~---~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   86 (92)
T cd05866          11 ELSVGESKFFTCTA---IGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT   86 (92)
T ss_pred             EEcCCCeEEEEEEE---EEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEE
Confidence            67889999999999   78887 899998555443 34455543 22   79999999999999999999999985 444


Q ss_pred             eEEE
Q psy535          237 AQLV  240 (460)
Q Consensus       237 ~~l~  240 (460)
                      +.|.
T Consensus        87 i~l~   90 (92)
T cd05866          87 VVLE   90 (92)
T ss_pred             EEEE
Confidence            4443

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.11  E-value=6.1e-10  Score=75.07  Aligned_cols=69  Identities=29%  Similarity=0.605  Sum_probs=54.8

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCC---cccEEE--ecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALP---KNRVKI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~---~~~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      ++|.|.+   .|.|.|.+.|++++....+   ..++..  .++.|.|.++..+|+|.|+|.|.|..|.......|.|
T Consensus         1 a~l~C~~---~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAA---TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeec---ccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            4689998   8999999999996653322   223333  3457999999999999999999999999888887766

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.10  E-value=8.4e-10  Score=76.84  Aligned_cols=74  Identities=22%  Similarity=0.348  Sum_probs=54.7

Q ss_pred             eecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEE--EeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIV--VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      .+..|+++.|.|.+.+.|.+ .+.|++++..+.........  ......|.|.++..+|+|.|.|.+.|..|....+
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~   80 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRP-TITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHT   80 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCC-eEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEE
Confidence            45679999999999988765 79999999887532111110  1112369999999999999999999988875443

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.10  E-value=5.6e-10  Score=77.09  Aligned_cols=75  Identities=29%  Similarity=0.505  Sum_probs=58.3

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE--ecceEEEccccceeceEEEEEEecccceeeeeeEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV  240 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~  240 (460)
                      .+..|+.+.|.|.+   .+.|.|.+.|++++...........  ....|.|.++..+|+|.|+|.+.|..|.....+.|.
T Consensus         5 ~~~~G~~v~L~C~~---~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856           5 ARPVGSSVRLKCVA---SGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             eccCCCeEEEEEEe---eEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            45679999999998   7889999999996554433222222  234799999999999999999999999877776654

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.10  E-value=8.5e-10  Score=77.68  Aligned_cols=80  Identities=14%  Similarity=0.260  Sum_probs=54.9

Q ss_pred             ceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecC------ccccccEEEe----ecCeEEEeecCCCCCeEEEEEEE
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLE------PYQTKDIVVM----QNGSLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~------~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~  132 (460)
                      +.+..+.+|+++.|.|.+.+.|.+ .+.|++.+..+.      .....++...    ...+|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~-~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~   82 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNT-SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF   82 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCce-EEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence            456778899999999999988765 799987432110      0123444432    22479999999999999999998


Q ss_pred             cCCCCcceeeEE
Q psy535          133 NAHGTQGSSGQM  144 (460)
Q Consensus       133 ~~~g~~~~~~~~  144 (460)
                      +..+. ...+.+
T Consensus        83 t~~~~-~~~~~l   93 (95)
T cd07701          83 TMPVK-TSKAYL   93 (95)
T ss_pred             eecCc-cEEEEE
Confidence            74333 344443

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.09  E-value=9.5e-10  Score=78.41  Aligned_cols=76  Identities=29%  Similarity=0.468  Sum_probs=59.2

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-----cccEEEe----cceEEEccccceeceEEEEEEeccccee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-----KNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-----~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      .+..|+.+.|.|.+   .|.|.|.+.|++++.....     ..++...    ...|.|.++...|.|.|.|.|.|..|..
T Consensus        12 ~~~~g~~v~l~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   88 (96)
T cd05732          12 TAVELEQITLTCEA---EGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGD   88 (96)
T ss_pred             eEecCCcEEEEEEE---eEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCc
Confidence            57889999999999   7899999999995532221     1223222    2479999999999999999999999998


Q ss_pred             eeeeEEEE
Q psy535          234 VQAAQLVV  241 (460)
Q Consensus       234 ~~~~~l~v  241 (460)
                      ..++.|.|
T Consensus        89 ~~s~~l~v   96 (96)
T cd05732          89 QQSMYLEV   96 (96)
T ss_pred             EEEEEEeC
Confidence            87776653

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.09  E-value=1.1e-09  Score=72.88  Aligned_cols=65  Identities=11%  Similarity=0.204  Sum_probs=49.8

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCcccc---ccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQT---KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      ++|+|.+.+..|++.|+||+|+.++.....   ........++|.|.....+|.+.|+|+|.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            689999988777779999999999864221   11112234569999999999999999999987654

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.08  E-value=5.9e-10  Score=74.42  Aligned_cols=68  Identities=26%  Similarity=0.502  Sum_probs=54.3

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEE--EecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVK--IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      +.|.|.+   .|.|.|.+.|+++++... ..+..  .....|.|.++...|.|.|+|.|.|..|.....+.+.|
T Consensus         1 v~l~C~~---~g~P~p~v~W~k~~~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIA---EGLPTPEISWIKIGGELP-ADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEe---eEecCCeEEEEECCeECC-CCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4789999   799999999999655433 22222  23458999999999999999999999999888877765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.08  E-value=6.4e-10  Score=75.15  Aligned_cols=67  Identities=19%  Similarity=0.441  Sum_probs=50.3

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCcc-cEEEe--cceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      ++|.|.+   .|.|.|.+.|++++..+.... +....  ...|.|.++..+|.|.|.|.|.|..|....+..+
T Consensus         1 v~L~C~~---~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~   70 (77)
T cd05760           1 VTLRCHI---DGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNF   70 (77)
T ss_pred             CEEEEEe---eecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceE
Confidence            5799998   799999999999554332222 22332  3579999999999999999999999986544333

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.07  E-value=8.3e-10  Score=77.40  Aligned_cols=76  Identities=24%  Similarity=0.310  Sum_probs=60.2

Q ss_pred             ccCCCCeEEEEeeeeccCC-----CCCCeeEEEcCCCccC----CcccEEEecceEEEccccceeceEEEEEEeccccee
Q psy535          163 QRKVGESVDMHCEAQEAEG-----TQKPTITWQRRDGVAL----PKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~-----~p~~~~~W~~~~~~~~----~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      .+..|+.+.|.|.+   .+     .|.+.+.|++++....    ...++...++.|.|.++..+|+|.|.|.+.|..|..
T Consensus        10 ~v~~G~~~~L~C~~---~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~   86 (94)
T cd05756          10 YVLEGEPVVIKCPL---FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM   86 (94)
T ss_pred             EEecCCCeEEECCC---CCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence            46789999999998   56     6888999999664322    123444456789999999999999999999999998


Q ss_pred             eeeeEEEE
Q psy535          234 VQAAQLVV  241 (460)
Q Consensus       234 ~~~~~l~v  241 (460)
                      ...+.|.|
T Consensus        87 ~~~~~L~v   94 (94)
T cd05756          87 KVSISLTV   94 (94)
T ss_pred             EEEEEEEC
Confidence            87776653

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.07  E-value=8.2e-10  Score=76.48  Aligned_cols=73  Identities=26%  Similarity=0.482  Sum_probs=56.7

Q ss_pred             CeEEEEeeeeccCCCCCC--eeEEEcCCCccCCcc----cE-----EEecceEEEccccceeceEEEEEEecccceeeee
Q psy535          168 ESVDMHCEAQEAEGTQKP--TITWQRRDGVALPKN----RV-----KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA  236 (460)
Q Consensus       168 ~~~~l~C~~~~~~~~p~~--~~~W~~~~~~~~~~~----~~-----~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  236 (460)
                      +.+.|.|.+   .+.|.|  .+.|++++ ..+...    .+     ....+.|.|.+++..|+|.|+|.|.|..|....+
T Consensus         1 e~~~L~C~~---~g~P~p~i~~~W~~~g-~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~   76 (85)
T cd04970           1 ESITLQCHA---SHDPTLDLTFTWSFNG-VPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSAS   76 (85)
T ss_pred             CcEEEEEEE---ecCCCCCeEEEEEECC-eEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEE
Confidence            468999999   788877  67999854 443211    11     1135679999999999999999999999999999


Q ss_pred             eEEEEecC
Q psy535          237 AQLVVEGT  244 (460)
Q Consensus       237 ~~l~v~~~  244 (460)
                      ..|.|.++
T Consensus        77 ~~l~V~~p   84 (85)
T cd04970          77 ADLIVRGP   84 (85)
T ss_pred             EEEEEECC
Confidence            99999863

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.07  E-value=7.9e-10  Score=75.04  Aligned_cols=66  Identities=23%  Similarity=0.368  Sum_probs=50.9

Q ss_pred             EEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-----------ecceEEEccccceeceEEEEEEecccceeeeeeEEE
Q psy535          172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-----------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV  240 (460)
Q Consensus       172 l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~  240 (460)
                      |.|.+   .|.|.|.++|++++..+........           ..+.|.|.++...|.|.|+|.|.|..|.....+.+.
T Consensus         3 i~~~v---~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTV---RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEe---EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            67888   8999999999995544433332211           133699999999999999999999999988877654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.07  E-value=1.2e-09  Score=75.71  Aligned_cols=73  Identities=25%  Similarity=0.267  Sum_probs=52.4

Q ss_pred             eeecceeeEEEEEEE-ecC---CCCCeEEEeeCCeecCccccccEEE-eecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535           66 QYLPFRLQGVVQCHI-KAN---PTFQYVTWTKDKRLLEPYQTKDIVV-MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~-~~~---~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                      +.+.+|.++.|.|.- .+.   ...+.++||||+.++... ..+... .....|.|.++..+|+|.|+|.+.+..+...
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~-~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~   82 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKD-NEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK   82 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCC-CcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence            446678899999973 222   123479999999988632 223332 2345799999999999999999999876553

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.06  E-value=6.9e-10  Score=77.61  Aligned_cols=72  Identities=25%  Similarity=0.487  Sum_probs=54.8

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCC---CccC-Cc--ccEE-----------EecceEEEccccceeceEEEEEEecc
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRD---GVAL-PK--NRVK-----------IVGGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~---~~~~-~~--~~~~-----------~~~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      |+.++|.|.+   .|.|.|.++|++++   +..+ ..  ....           .....|.|.++..+|+|.|+|.|.|.
T Consensus         1 G~~v~l~C~v---~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   77 (90)
T cd04974           1 GSDVEFHCKV---YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNS   77 (90)
T ss_pred             CCcEEEEEEE---eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecc
Confidence            6789999999   89999999999852   1111 11  0101           01236899999999999999999999


Q ss_pred             cceeeeeeEEEE
Q psy535          230 VATIVQAAQLVV  241 (460)
Q Consensus       230 ~g~~~~~~~l~v  241 (460)
                      .|....+..|.|
T Consensus        78 ~G~~~~sa~L~V   89 (90)
T cd04974          78 IGPSHHSAWLTV   89 (90)
T ss_pred             cCcccCCEEEEe
Confidence            999888888776

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.06  E-value=7.6e-10  Score=73.99  Aligned_cols=66  Identities=17%  Similarity=0.306  Sum_probs=50.1

Q ss_pred             EEeeeeccCCCCCCeeEEEcCCCccCCcccEEE---------ecceEEEccccceeceEEEEEEecccceeeeeeEEE
Q psy535          172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI---------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV  240 (460)
Q Consensus       172 l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~  240 (460)
                      |.|.+   .|.|.|.++|++++..+....+...         ..+.|.|.++...|+|.|+|.|.|..|....++.+.
T Consensus         3 i~~~v---~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTV---KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEE---eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            67888   8999999999995443333332211         134799999999999999999999999987776543

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.05  E-value=1.5e-09  Score=70.55  Aligned_cols=63  Identities=24%  Similarity=0.449  Sum_probs=49.8

Q ss_pred             ceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        70 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      +|+++.|.|.+.+.+.+ .+.|++++..+.   ...........|.|.++...|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVP-NITWLKDGKPLP---ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCC-eEEEEECCEECC---CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            47889999998777655 799999998775   1223334456899999999999999999988654

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.04  E-value=2e-09  Score=76.33  Aligned_cols=79  Identities=29%  Similarity=0.624  Sum_probs=56.3

Q ss_pred             eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-c---cEEEecceEEEccc-----cceeceEEEEEE
Q psy535          156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-N---RVKIVGGNITIEGL-----RRVDFGYYECVV  226 (460)
Q Consensus       156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~---~~~~~~~~l~i~~~-----~~~~~g~y~C~a  226 (460)
                      ..|... .+..|+++.|.|.+   .+.|.|.+.|++++. .+.. .   .....++.+.|.++     ...|.|.|+|.|
T Consensus         4 ~~P~~~-~~~~g~~v~l~C~v---~g~P~p~i~W~k~g~-~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a   78 (95)
T cd05722           4 SEPSDI-VAVRGGPVVLNCSA---EGEPPPKIEWKKDGV-LLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVA   78 (95)
T ss_pred             ECCCCe-EEcCCCCEEEeeec---ccCCCCEEEEEECCe-ECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEE
Confidence            345444 56789999999999   789999999999544 4432 1   12223556777665     578999999999


Q ss_pred             ecc-ccee-eeeeEE
Q psy535          227 SNE-VATI-VQAAQL  239 (460)
Q Consensus       227 ~n~-~g~~-~~~~~l  239 (460)
                      .|. .|.. +..+.|
T Consensus        79 ~N~~~G~~~s~~~~l   93 (95)
T cd05722          79 QNDSLGSIVSRTARL   93 (95)
T ss_pred             ECCccCcEEEeeeEE
Confidence            999 8876 334444

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.03  E-value=1e-09  Score=74.23  Aligned_cols=71  Identities=18%  Similarity=0.411  Sum_probs=53.5

Q ss_pred             CCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeee
Q psy535          157 KPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQ  235 (460)
Q Consensus       157 ~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  235 (460)
                      .|... .+..|+.+.|.|.+   .|.|.| .+.|.+++ ..+.. ......+.|.|..+.  |.|.|.|.|.|..|...+
T Consensus         4 ~P~~~-~v~~G~~v~l~C~a---~G~P~P~~I~W~k~g-~~l~~-~~~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749           4 EPEDL-SVTANTPFNLTCQA---VGPPEPVEILWWQGG-SPLGD-PPAPSPSVLNVPGLN--ETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             CCCce-EEcCCCCEEEEEEe---eeecCCeEEEEEECC-EECCC-CCCCCCCEEEEcccc--CCeEEEEEEEeccCcEEe
Confidence            34444 68899999999999   899999 79999954 44432 122345678888774  679999999999997543

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.03  E-value=1.5e-09  Score=71.21  Aligned_cols=67  Identities=15%  Similarity=0.289  Sum_probs=50.5

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCc-ccEEEecceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      +.|.|.+   .|.|.|.+.|++++..+... .+....+.+|.|.++..+|+|.|+|.|.|..........+
T Consensus         1 ~~l~c~v---~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i   68 (72)
T cd07702           1 YRLTPKV---KAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI   68 (72)
T ss_pred             CeEEeeE---EEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence            3689999   89999999999955433322 3444455689999999999999999999976554444433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.01  E-value=3e-09  Score=73.12  Aligned_cols=72  Identities=28%  Similarity=0.523  Sum_probs=55.2

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCC--cc--CCcc----cEEE-ecceEEEccccceeceEEEEEEecccceeeeee
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDG--VA--LPKN----RVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~--~~--~~~~----~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      |+.+.|.|.+   .|.|.|.+.|+++..  ..  ....    ++.. ....|.|.++...|.|.|.|.|.|..|.....+
T Consensus         1 G~~v~l~C~~---~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   77 (81)
T cd05765           1 GETASFHCDV---TGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANF   77 (81)
T ss_pred             CCcEEEEeec---cccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEE
Confidence            6789999998   899999999998531  11  1111    1111 235799999999999999999999999988888


Q ss_pred             EEEE
Q psy535          238 QLVV  241 (460)
Q Consensus       238 ~l~v  241 (460)
                      .|.|
T Consensus        78 ~l~v   81 (81)
T cd05765          78 PLSV   81 (81)
T ss_pred             EEeC
Confidence            7754

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.00  E-value=3.1e-09  Score=74.44  Aligned_cols=72  Identities=24%  Similarity=0.488  Sum_probs=54.8

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCC---CccC-Ccc--cEEEe-----------cceEEEccccceeceEEEEEEecc
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRD---GVAL-PKN--RVKIV-----------GGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~---~~~~-~~~--~~~~~-----------~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      |+.+.|.|.+   .+.|.|.+.|++.+   +..+ ...  .....           ...|.|.++..+|+|.|+|.|.|.
T Consensus         1 G~~v~L~C~~---~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   77 (90)
T cd05858           1 GSTVEFVCKV---YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNS   77 (90)
T ss_pred             CCeEEEEEEE---ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeC
Confidence            6789999999   79999999999842   2211 111  11110           146999999999999999999999


Q ss_pred             cceeeeeeEEEE
Q psy535          230 VATIVQAAQLVV  241 (460)
Q Consensus       230 ~g~~~~~~~l~v  241 (460)
                      .|....+..|.|
T Consensus        78 ~G~~~~~a~L~V   89 (90)
T cd05858          78 IGISHHSAWLTV   89 (90)
T ss_pred             CCcccceEEEEE
Confidence            999888887766

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.00  E-value=4.3e-09  Score=73.32  Aligned_cols=70  Identities=33%  Similarity=0.583  Sum_probs=54.9

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEE-ecceEEEccccceeceEEEEEEecccceee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIV  234 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  234 (460)
                      .+..|+.+.|.|.+.  .+.|.|.+.|++++..... ..+... .++.|.|.++...|.|.|+|.|.|..|...
T Consensus         7 ~~~~G~~v~l~C~~~--~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   78 (86)
T cd05724           7 QVAVGEMAVLECSPP--RGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERE   78 (86)
T ss_pred             EEeCCCCEEEEEECC--CCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCcee
Confidence            577899999999863  5889999999995443332 223333 346899999999999999999999998754

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.00  E-value=2.3e-09  Score=71.82  Aligned_cols=69  Identities=35%  Similarity=0.527  Sum_probs=52.3

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccC--CcccEEE-ecceEEEccccceeceEEEEEEeccccee-eeeeEEEE
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVAL--PKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATI-VQAAQLVV  241 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~--~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~~~l~v  241 (460)
                      ++|.|.+   .|.|.|.+.|++++....  ...++.. .++.|.|.++...|.|.|+|.|.|..|.. +....|.|
T Consensus         1 a~l~C~~---~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAA---SGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEE---eEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            4789998   799999999999544332  2334443 35589999999999999999999999974 45555554

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.99  E-value=3.1e-09  Score=72.98  Aligned_cols=72  Identities=25%  Similarity=0.452  Sum_probs=55.6

Q ss_pred             eeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      ..+.+|++++|.|.+.+.|.. .+.|++++..+...         ...|.+.++..+|+|.|+|.+.+..+. ..+..+.
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~---------~~~~~~~~~~~~~~g~y~C~~~~~~~~-~~s~~~~   77 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPP-QVQWYKNGSPINSS---------QNGLFIPNVSPEDSGNYTCRASNGSGS-NTSTSVN   77 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSS-EEEEEETTEEEEEE---------SSEEEESSEEGGGTEEEEEEEEETTEE-EEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccce-eeeeeeeeeeeeee---------eeeeeeeeeccccCEEEEEEEEeCCCC-eEeeeEE
Confidence            557889999999999987764 89999998877521         122777889999999999999986653 3566666


Q ss_pred             EEe
Q psy535          146 VLV  148 (460)
Q Consensus       146 v~v  148 (460)
                      |.|
T Consensus        78 v~V   80 (80)
T PF13895_consen   78 VTV   80 (80)
T ss_dssp             EEE
T ss_pred             eeC
Confidence            654

...

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.98  E-value=5.1e-09  Score=74.68  Aligned_cols=84  Identities=20%  Similarity=0.344  Sum_probs=61.0

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCC--cccEEEec--------ceEEEcccccee-
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALP--KNRVKIVG--------GNITIEGLRRVD-  218 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~--~~~~~~~~--------~~l~i~~~~~~~-  218 (460)
                      ||.+. .+... .+..|+.+.|.|.+   .|.|.| .+.|++++..+..  ..++.+..        +.|.|.++...| 
T Consensus         2 pp~i~-~~~~~-~~~~G~~v~L~C~~---~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~   76 (98)
T cd05758           2 PPIIT-SEATQ-YAILGDKGRVECFI---FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDF   76 (98)
T ss_pred             CCeEc-CCCcE-EEeCCCcEEEEEEE---cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCcccccc
Confidence            55553 33333 57889999999999   799999 6999985433322  23444432        369999999855 


Q ss_pred             ceEEEEEEecccceeeeeeEE
Q psy535          219 FGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       219 ~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      .|.|.|.|.|..|.....+.|
T Consensus        77 ~G~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          77 QTSYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             ceeEEEEEEcCCCcccEEEEe
Confidence            899999999999997776654

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.97  E-value=8.9e-09  Score=71.21  Aligned_cols=83  Identities=19%  Similarity=0.200  Sum_probs=61.5

Q ss_pred             eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      ....+.+|+++.|.|.+.++|++..+.|.+++..+.............      +.|.|.+++.+|+|.|+|.|.|....
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            345688899999999999999986699999987665333322221111      35999999999999999999998776


Q ss_pred             cceeeEEEEEe
Q psy535          138 QGSSGQMEVLV  148 (460)
Q Consensus       138 ~~~~~~~~v~v  148 (460)
                      .  +.++.|.|
T Consensus        91 ~--s~tF~l~v   99 (101)
T cd05860          91 A--SVTFNVYV   99 (101)
T ss_pred             E--EEEEEEEE
Confidence            5  44454544

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.96  E-value=7.4e-09  Score=72.11  Aligned_cols=78  Identities=17%  Similarity=0.309  Sum_probs=52.0

Q ss_pred             eeecceeeEEEEEEEecCCCCCeEEEeeCC--eecCc--cccccEEEeecCeEEEeecCCCCCeEEEEEEEc-CCCCcce
Q psy535           66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLLEP--YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN-AHGTQGS  140 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~-~~g~~~~  140 (460)
                      +...+|+++.|.|.. +.|.+ .+.|++.+  .....  ....+.. ..++.|.|.++..+|+|.|+|.+.+ ..+..  
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p-~v~Wykq~~g~~~~~~~~~~~r~~-~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~--   80 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQA-SVKWLFQRGGDQRKEEVKTEERLI-HTERGLLLRSLQRSDAGVYTCTAVEHSFSQT--   80 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCc-eEEEEEECCCCCccccccccccEE-EecCeEEEeeCChhHCEEEEEEEEccCCeEE--
Confidence            456789999999996 45554 79999833  22111  0123333 3456799999999999999999985 44433  


Q ss_pred             eeEEEEEe
Q psy535          141 SGQMEVLV  148 (460)
Q Consensus       141 ~~~~~v~v  148 (460)
                      ...+.|.|
T Consensus        81 ~~~~~l~v   88 (91)
T cd05871          81 LAKYTLHV   88 (91)
T ss_pred             EEEEEEEE
Confidence            33555554

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.96  E-value=5.5e-09  Score=72.12  Aligned_cols=72  Identities=15%  Similarity=0.281  Sum_probs=54.7

Q ss_pred             CCeEEEEeeeeccCCC--CCCeeEEEcCCCccCCccc---------EEEecceEEEccccceeceEEEEEEecccceeee
Q psy535          167 GESVDMHCEAQEAEGT--QKPTITWQRRDGVALPKNR---------VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQ  235 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~--p~~~~~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  235 (460)
                      |+.+.|.|.+   .+.  |.+.+.|.+.+........         .......|.|.+++..|+|.|+|.|.|..|....
T Consensus         1 Ge~~~L~C~~---~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~   77 (84)
T cd05742           1 GETLVLNCTV---LTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKE   77 (84)
T ss_pred             CCeEEEEEEE---EeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEE
Confidence            6889999999   677  8889999875543221110         1123457999999999999999999999998888


Q ss_pred             eeEEEE
Q psy535          236 AAQLVV  241 (460)
Q Consensus       236 ~~~l~v  241 (460)
                      +..+.|
T Consensus        78 s~~v~v   83 (84)
T cd05742          78 STKVNI   83 (84)
T ss_pred             EEEEEE
Confidence            777654

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.96  E-value=1.4e-09  Score=70.89  Aligned_cols=59  Identities=24%  Similarity=0.413  Sum_probs=42.8

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC-----eEEEeecCCCCCeEEEEEE
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG-----SLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~l~i~~~~~~d~G~y~C~~  131 (460)
                      |++++|.|.+...+++..+.|++++..+...  ........+     .|.|.++..+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEG--STTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEE--EEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCc--ceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            6789999999444445589999998876532  111112222     2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.96  E-value=7.3e-09  Score=72.67  Aligned_cols=79  Identities=27%  Similarity=0.455  Sum_probs=56.6

Q ss_pred             CCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC-CcccEEEe-c----ceEEEccccceeceEEEEEEeccc
Q psy535          157 KPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIV-G----GNITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       157 ~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~-~~~~~~~~-~----~~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      .|... .+..|+.+.|.|.+   .|.| +.+.|++.++..+ ...+.... .    ..|.|.++..+|.|.|+|.|.|..
T Consensus         6 ~p~~~-~v~~G~~~~l~C~~---~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   80 (92)
T cd04977           6 VPSQG-EISVGESKFFLCQV---IGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAK   80 (92)
T ss_pred             ecCcE-EECCCCeEEEEEEe---EeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCC
Confidence            34443 67889999999999   6776 4999997555433 32333322 2    379999999999999999999986


Q ss_pred             ce-eeeeeEEE
Q psy535          231 AT-IVQAAQLV  240 (460)
Q Consensus       231 g~-~~~~~~l~  240 (460)
                      |. ...++.|.
T Consensus        81 g~~~~~sv~l~   91 (92)
T cd04977          81 GTESEATVNLK   91 (92)
T ss_pred             CCcceeEEEEE
Confidence            54 45555443

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.95  E-value=8.8e-09  Score=71.44  Aligned_cols=77  Identities=16%  Similarity=0.102  Sum_probs=52.7

Q ss_pred             eeeecceeeEEEEEEEec----------CCCCCeEEEeeCCeecCccc---cc-cEEEeecCeEEEeecCCCCCeEEEEE
Q psy535           65 VQYLPFRLQGVVQCHIKA----------NPTFQYVTWTKDKRLLEPYQ---TK-DIVVMQNGSLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~----------~~~~~~v~W~~~~~~~~~~~---~~-~~~~~~~~~l~i~~~~~~d~G~y~C~  130 (460)
                      ...+.+|+.+.|.|....          ......++|+|++..+....   .. ......+..|.|.++..+|+|.|+|.
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~   88 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV   88 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence            345778999999998611          11122699999975554322   11 12334566899999999999999999


Q ss_pred             EEcCCCCccee
Q psy535          131 PYNAHGTQGSS  141 (460)
Q Consensus       131 ~~~~~g~~~~~  141 (460)
                      +.|.......+
T Consensus        89 ~rN~t~C~~~~   99 (104)
T cd05896          89 LRNSTYCMKVS   99 (104)
T ss_pred             ECCCCcceEEE
Confidence            99876554333

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.94  E-value=5.3e-09  Score=70.68  Aligned_cols=70  Identities=30%  Similarity=0.594  Sum_probs=55.4

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCcc--cEEEe--cceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKN--RVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                      +.|.|.+   .|.|.|.+.|++++..+....  ++...  +..|.|.++...|.|.|+|.+.|..|.....+.|.|.
T Consensus         1 ~~L~C~v---~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHA---EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEe---eecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            3689998   799999999999655443322  23332  2469999999999999999999999999988888775

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.94  E-value=4.6e-09  Score=71.54  Aligned_cols=67  Identities=34%  Similarity=0.649  Sum_probs=50.4

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccC--------CcccEEE-ecceEEEccccceeceEEEEEEeccccee-eeeeEE
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVAL--------PKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATI-VQAAQL  239 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~--------~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~~~l  239 (460)
                      ++|.|.+   .|.|.|.+.|++.++...        ...++.. .+++|.|.++...|.|.|.|.|.|..|.. +..+.|
T Consensus         1 v~l~C~~---~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734           1 VTLNCSA---EGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             CEeEeeC---eEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            5789998   799999999998644221        1233333 45789999999999999999999999976 333433

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.93  E-value=1.1e-08  Score=70.87  Aligned_cols=73  Identities=32%  Similarity=0.482  Sum_probs=57.8

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      .+..|+.++|.|.+.  .+.|.+.+.|++++.. ++. +....++.|.|.++..+|+|.|.|.|.|..|.......|
T Consensus        12 ~v~~G~~v~L~C~~~--~~~~~~~i~W~~~~~~-~~~-~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          12 EVRPGADVSFICRAK--SKSPAYTLVWTRVGGG-LPS-RAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             EEcCCCCEEEEEEcC--CCCCCcEEEEEECCCc-CCC-cccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence            578899999999983  3468889999996544 322 223346789999999999999999999999988776654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.92  E-value=2.3e-08  Score=70.77  Aligned_cols=92  Identities=40%  Similarity=0.711  Sum_probs=68.7

Q ss_pred             CCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCC
Q psy535          343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG  421 (460)
Q Consensus       343 P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (460)
                      |.+|.++.+.... .++.|+|.++....+.+.+|.|+|...+.                         ..|..+......
T Consensus         1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~-------------------------~~~~~~~~~~~~   55 (93)
T cd00063           1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGS-------------------------GDWKEVEVTPGS   55 (93)
T ss_pred             CcCCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCC-------------------------CCCEEeeccCCc
Confidence            4567777777766 69999999986655678899999987531                         112222222135


Q ss_pred             cceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       422 ~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      ...+.+.+|.|++.|.|+|+|.+..|.|.++..+.++|
T Consensus        56 ~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~~s~~~~~~t   93 (93)
T cd00063          56 ETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT   93 (93)
T ss_pred             ccEEEEccccCCCEEEEEEEEECCCccCCCcccccccC
Confidence            67899999999999999999999999998888666554

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.91  E-value=1.3e-08  Score=72.14  Aligned_cols=79  Identities=18%  Similarity=0.325  Sum_probs=52.8

Q ss_pred             eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecC------ccccccEEEe----ecCeEEEeecCCCCCeEEEEEEEc
Q psy535           64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLE------PYQTKDIVVM----QNGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~------~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      ....+.+|++++|.|.+.+.+.+ .+.|++.+..+.      +....++...    ....|.|.+++.+|+|.|+|.+.+
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNS-SLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCc-eEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence            34567889999999999877654 799986332210      0112344332    224699999999999999999987


Q ss_pred             CCCCcceeeEE
Q psy535          134 AHGTQGSSGQM  144 (460)
Q Consensus       134 ~~g~~~~~~~~  144 (460)
                      ... ...++.+
T Consensus        84 ~~~-~~~~~~~   93 (95)
T cd05717          84 MPV-QTAKATV   93 (95)
T ss_pred             CCC-ceEEEEE
Confidence            543 3344443

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.91  E-value=1.5e-08  Score=71.10  Aligned_cols=66  Identities=33%  Similarity=0.668  Sum_probs=51.9

Q ss_pred             CCCeEEEEeeeeccCCCCCCeeEEEcCCCccC---CcccEEEecceEEEcccc-ceeceEEEEEEecccceeee
Q psy535          166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVAL---PKNRVKIVGGNITIEGLR-RVDFGYYECVVSNEVATIVQ  235 (460)
Q Consensus       166 ~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~---~~~~~~~~~~~l~i~~~~-~~~~g~y~C~a~n~~g~~~~  235 (460)
                      .+..+.|.|.+   .|.|.|.+.|++++ ..+   ...++...++.|.|.++. ..|.|.|+|.|.|..|...+
T Consensus        18 ~~~~~~l~C~~---~g~p~p~i~W~k~~-~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          18 DEGKVSLNCRA---RGSPPPTYRWLMNG-TEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CCCEEEEEEee---eEcCCCEEEEEECC-EECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            45689999999   78899999999954 343   233555567789998876 48999999999999997543

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.91  E-value=1.6e-08  Score=68.42  Aligned_cols=79  Identities=20%  Similarity=0.291  Sum_probs=58.2

Q ss_pred             eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535           64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ  143 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~  143 (460)
                      ....+..|+++.|.|...+.. + .+.|++++..+.+  +.++.....| |.|..++..|+|.|+|.+. ..|....-+.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~~-A-~v~W~~ng~~l~~--~~r~~~~~~G-LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~   77 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSNL-A-SPVWLFNGTPLNA--QFSYRVGTDG-LLILVTSPEHSGTYRCYSE-EEGFQQLVAS   77 (85)
T ss_pred             eEEEEecCCCEEEECCCCCCC-c-cEEEEECCcccCC--CcceEEeCCC-CEEEECCHhhCEEEEEEEe-cCCCeEEEEE
Confidence            345677899999999997753 3 7999999999864  3455555555 7799999999999999986 3455444444


Q ss_pred             EEEEe
Q psy535          144 MEVLV  148 (460)
Q Consensus       144 ~~v~v  148 (460)
                      +.|.|
T Consensus        78 y~l~v   82 (85)
T cd05872          78 YSLNV   82 (85)
T ss_pred             EEEEE
Confidence            44443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.91  E-value=5.2e-09  Score=70.38  Aligned_cols=66  Identities=20%  Similarity=0.379  Sum_probs=50.0

Q ss_pred             ceeeCCCcccccCCCCeEEEEeeeeccCCCCC-CeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecc
Q psy535          153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK-PTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       153 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      .+.+.|... .+..|+.++|.|.+   .+.|. ..+.|+++ +..+.     ..+..|.|.++ .+|+|.|+|.|.|.
T Consensus         2 vv~~~P~~~-~v~~G~~V~L~C~~---~~~p~~~~~~W~kn-g~~l~-----~~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           2 VVSLDPPWT-TIFQGEKVTLTCNG---FNSPEQNSTQWYHN-GKLLE-----TTTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             eEEeCCCCe-EeeCCCCEEEEEeC---CCCCCCccEEEEEC-CEEee-----ccCCeEEEeec-ccCCEEeEEECCCC
Confidence            344555554 68899999999998   66665 47999994 43331     24567999999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.90  E-value=1.1e-08  Score=70.62  Aligned_cols=76  Identities=17%  Similarity=0.198  Sum_probs=51.4

Q ss_pred             eeeEEEEEEEecCCC-CCeEEEeeCCeecCcc---ccccEE----EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceee
Q psy535           71 RLQGVVQCHIKANPT-FQYVTWTKDKRLLEPY---QTKDIV----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG  142 (460)
Q Consensus        71 g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~---~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~  142 (460)
                      |+++.|.|.+.+.+. ...+.|..++......   ...+..    ....+.|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            678999999987543 2468999877643210   110111    11235799999999999999999999887655554


Q ss_pred             EEEE
Q psy535          143 QMEV  146 (460)
Q Consensus       143 ~~~v  146 (460)
                      .+.|
T Consensus        81 ~~~V   84 (86)
T cd05862          81 IVIV   84 (86)
T ss_pred             EEEE
Confidence            4433

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.90  E-value=1.5e-08  Score=69.64  Aligned_cols=73  Identities=14%  Similarity=0.286  Sum_probs=49.8

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec-------CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-------GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV  146 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v  146 (460)
                      +.|.|.+.|..+.+.|+|+++|.++...... .....+       +.|.|.....+|.|.|+|.|.|..........++|
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYS-KELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceee-eeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            6899999885333489999999987532111 111122       24777777778899999999998766656666655


Q ss_pred             E
Q psy535          147 L  147 (460)
Q Consensus       147 ~  147 (460)
                      .
T Consensus        81 ~   81 (82)
T cd05759          81 D   81 (82)
T ss_pred             c
Confidence            4

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.90  E-value=5.8e-09  Score=70.47  Aligned_cols=65  Identities=25%  Similarity=0.396  Sum_probs=49.1

Q ss_pred             EEEEeeeeccCC-CCCCeeEEEcCCCccCCcccEE---E----ecceEEEccccceeceEEEEEEecccceeeeee
Q psy535          170 VDMHCEAQEAEG-TQKPTITWQRRDGVALPKNRVK---I----VGGNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       170 ~~l~C~~~~~~~-~p~~~~~W~~~~~~~~~~~~~~---~----~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      +.|.|.+   .| .|.|.+.|++++..+....+..   .    ....|.|.++...|.|.|+|.|.|..|....++
T Consensus         1 ~~l~C~~---~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   73 (75)
T cd05750           1 LVLKCEA---TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA   73 (75)
T ss_pred             CEEEEEc---cCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence            4689999   67 8999999999554333222211   1    234799999999999999999999999876654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.88  E-value=7.7e-09  Score=72.37  Aligned_cols=87  Identities=13%  Similarity=0.192  Sum_probs=58.5

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC-C
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA-H  135 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~-~  135 (460)
                      |.+...|. ..+..|++|+|.|.... + ...+.|+|+|.......  .......+.|.|.+++.+|+|.|+|+..+. .
T Consensus         3 P~L~a~p~-~vV~~G~~VtL~C~~~~-~-~~~f~l~k~g~~~~~~~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~   77 (91)
T cd05751           3 PSLWAEPS-SVVPLGKPVTLRCQGPY-G-AVEYRLYREGSTFAVKK--PPEPQNKAKFFIPSMKREHAGRYRCYYRSGVA   77 (91)
T ss_pred             CEEEecCC-CccCCCCcEEEEEecCC-C-CCEEEEEECCCCccccc--cCCCceeEEEEccCCChhHCEEEEEEEECCCC
Confidence            34445554 46788999999998753 3 33799999987543110  001122346999999999999999999876 3


Q ss_pred             CCcceeeEEEEEe
Q psy535          136 GTQGSSGQMEVLV  148 (460)
Q Consensus       136 g~~~~~~~~~v~v  148 (460)
                      +....+..+.|.|
T Consensus        78 ~~S~~Sd~lel~V   90 (91)
T cd05751          78 LWSEPSDPLELVV   90 (91)
T ss_pred             ccCCCCCcEEEEe
Confidence            3344555666654

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.87  E-value=2.1e-08  Score=71.35  Aligned_cols=75  Identities=21%  Similarity=0.243  Sum_probs=53.9

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCe-----ecC------------ccccccEEEeecCeEEEeecCCCCC
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR-----LLE------------PYQTKDIVVMQNGSLLFTRVNQNHQ  124 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-----~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~  124 (460)
                      .+....+.+|+++.|.|...... ...+.|+|+..     .+.            +....|..+..+++|.|.+++.+|+
T Consensus         4 e~~p~~~~~G~~V~L~v~~~p~~-~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~   82 (105)
T cd05774           4 ELVPPQVAEGENVLLLVHNLPEN-LLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT   82 (105)
T ss_pred             eccCCcccCCCCEEEEecCCCCC-ceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence            33344577899999999764332 23799999632     110            1234567777889999999999999


Q ss_pred             eEEEEEEEcCCCC
Q psy535          125 GRYTCTPYNAHGT  137 (460)
Q Consensus       125 G~y~C~~~~~~g~  137 (460)
                      |.|+|.+.+....
T Consensus        83 G~Y~~~v~~~~~~   95 (105)
T cd05774          83 GFYTLQTITTNFQ   95 (105)
T ss_pred             EEEEEEEEeCCcc
Confidence            9999999886643

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.85  E-value=1.1e-08  Score=71.07  Aligned_cols=70  Identities=7%  Similarity=0.123  Sum_probs=48.0

Q ss_pred             eecceeeEEEEEEEecCCCCCeEEEeeCCeecCccc------------cccEEEe----ec--CeEEEeecCCCCCeEEE
Q psy535           67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQ------------TKDIVVM----QN--GSLLFTRVNQNHQGRYT  128 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~------------~~~~~~~----~~--~~l~i~~~~~~d~G~y~  128 (460)
                      .+.+|++|+|.|.+.+.+.+ .+.|++++.......            ..++...    ..  ..|.|.+++.+|+|.|+
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~-~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCc-EEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            45689999999999887654 799997663321111            1111111    11  25999999999999999


Q ss_pred             EEEEcCCCC
Q psy535          129 CTPYNAHGT  137 (460)
Q Consensus       129 C~~~~~~g~  137 (460)
                      |.+.|..+.
T Consensus        82 C~v~~~~~~   90 (94)
T cd07690          82 CEVEDKKEE   90 (94)
T ss_pred             EEECCccce
Confidence            999876543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.85  E-value=3.9e-08  Score=67.58  Aligned_cols=73  Identities=19%  Similarity=0.364  Sum_probs=53.0

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc----cEE----EecceEEEccccceeceEEEEEEecccc--eeeee
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN----RVK----IVGGNITIEGLRRVDFGYYECVVSNEVA--TIVQA  236 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~----~~~----~~~~~l~i~~~~~~~~g~y~C~a~n~~g--~~~~~  236 (460)
                      |+.++|.|.+   .+.|.+.+.|.+.++......    +..    .....|.|.+++..|+|.|.|.|.|..+  ....+
T Consensus         1 Ge~~~l~C~~---~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~s   77 (84)
T cd05861           1 GETITVNCIV---QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKK   77 (84)
T ss_pred             CCcEEEEEEE---ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEE
Confidence            7889999999   678899999997543221110    111    1245799999999999999999998766  55666


Q ss_pred             eEEEEe
Q psy535          237 AQLVVE  242 (460)
Q Consensus       237 ~~l~v~  242 (460)
                      +.|.|.
T Consensus        78 v~i~V~   83 (84)
T cd05861          78 VNITVH   83 (84)
T ss_pred             EEEEEe
Confidence            666653

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.83  E-value=3.3e-08  Score=66.58  Aligned_cols=64  Identities=25%  Similarity=0.499  Sum_probs=46.7

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccC--CcccEEE--ecceEEEccccc----eeceEEEEEEecccceeeee
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVAL--PKNRVKI--VGGNITIEGLRR----VDFGYYECVVSNEVATIVQA  236 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~--~~~~~~~--~~~~l~i~~~~~----~~~g~y~C~a~n~~g~~~~~  236 (460)
                      +.|.|.+   .|.|.|.+.|++++..+.  ...+...  .+++|.|..+..    .|.|.|+|.|.|..|...+.
T Consensus         1 ~~l~C~a---~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874           1 IVIQCEA---KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             CEEEeeC---cccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            4789999   899999999999554331  1223333  356788877764    36899999999999986543

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.82  E-value=2.6e-08  Score=69.36  Aligned_cols=77  Identities=14%  Similarity=0.255  Sum_probs=56.7

Q ss_pred             ccCCCCeEEEEeeeecc--CCCCCCeeEEEcCCCccCCcccEEE-ecceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535          163 QRKVGESVDMHCEAQEA--EGTQKPTITWQRRDGVALPKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~--~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      .+..|....|.|.....  ...|.|.+.|++++ ..+...+... .++.|.|.++..+|+|.|+|.+.|..+.....+..
T Consensus         6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~-~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~   84 (92)
T cd05757           6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDC-KLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTR   84 (92)
T ss_pred             EEeeccCCEEECCChHHccCCCCCCcEEEeECC-EECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEE
Confidence            56789999999987421  12367899999954 4554433333 66789999999999999999999988776555444


Q ss_pred             E
Q psy535          240 V  240 (460)
Q Consensus       240 ~  240 (460)
                      .
T Consensus        85 t   85 (92)
T cd05757          85 T   85 (92)
T ss_pred             E
Confidence            3

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.82  E-value=4.5e-08  Score=66.83  Aligned_cols=63  Identities=17%  Similarity=0.453  Sum_probs=50.8

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-ccEEEecceEEEccccceeceEEEEEEecc
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRVKIVGGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      .+..|+++.|.|.+   . .+.+.+.|++++..+... .++.+.++.|.|.+++..|+|.|+|.+.+.
T Consensus         7 ~v~~G~~v~L~C~~---~-~~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           7 TFKLGNNAELKCSP---K-SNLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             EEECCCCEEEEEEC---C-CCCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence            67889999999997   3 367899999954433332 456677788999999999999999999875

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>smart00410 IG_like Immunoglobulin like

Probab=98.81  E-value=1.1e-07  Score=66.21  Aligned_cols=79  Identities=24%  Similarity=0.444  Sum_probs=57.7

Q ss_pred             eeeecceeeEEEEEEEecCCCCCeEEEeeC-CeecCccccccEEEeec---CeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535           65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKD-KRLLEPYQTKDIVVMQN---GSLLFTRVNQNHQGRYTCTPYNAHGTQGS  140 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~~~~g~~~~  140 (460)
                      ...+..|+++.|.|.+.+.+. ..+.|+++ +..+..  ..++.....   ..|.|.++...|+|.|+|.+.+..+....
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~v~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~   79 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPP-PEVTWYKQGGKLLAE--SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASS   79 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCC-CeEEEEECCCEEcCC--CCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence            455678999999999988744 47999998 776642  233333333   57999999999999999999977666533


Q ss_pred             eeEEEEEe
Q psy535          141 SGQMEVLV  148 (460)
Q Consensus       141 ~~~~~v~v  148 (460)
                      .  +.|.|
T Consensus        80 ~--~~l~V   85 (86)
T smart00410       80 T--TTLTV   85 (86)
T ss_pred             E--EEEEE
Confidence            3  44443

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.81  E-value=1.1e-07  Score=66.21  Aligned_cols=79  Identities=24%  Similarity=0.444  Sum_probs=57.7

Q ss_pred             eeeecceeeEEEEEEEecCCCCCeEEEeeC-CeecCccccccEEEeec---CeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535           65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKD-KRLLEPYQTKDIVVMQN---GSLLFTRVNQNHQGRYTCTPYNAHGTQGS  140 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~~~~g~~~~  140 (460)
                      ...+..|+++.|.|.+.+.+. ..+.|+++ +..+..  ..++.....   ..|.|.++...|+|.|+|.+.+..+....
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~v~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~   79 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPP-PEVTWYKQGGKLLAE--SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASS   79 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCC-CeEEEEECCCEEcCC--CCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence            455678999999999988744 47999998 776642  233333333   57999999999999999999977666533


Q ss_pred             eeEEEEEe
Q psy535          141 SGQMEVLV  148 (460)
Q Consensus       141 ~~~~~v~v  148 (460)
                      .  +.|.|
T Consensus        80 ~--~~l~V   85 (86)
T smart00409       80 T--TTLTV   85 (86)
T ss_pred             E--EEEEE
Confidence            3  44443

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.81  E-value=2e-08  Score=67.84  Aligned_cols=63  Identities=32%  Similarity=0.617  Sum_probs=46.5

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCC--cccEEE--ecceEEEccccc----eeceEEEEEEecccceeee
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALP--KNRVKI--VGGNITIEGLRR----VDFGYYECVVSNEVATIVQ  235 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~--~~~~~~--~~~~l~i~~~~~----~~~g~y~C~a~n~~g~~~~  235 (460)
                      +.|.|.+   .|.|.|.++|++++..+..  ..++..  ..+.|.|..+..    .|+|.|+|.|.|..|...+
T Consensus         1 i~l~C~~---~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEA---KGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeC---cccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            4789998   8999999999995443322  223333  356888888754    6899999999999997543

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.80  E-value=8.5e-08  Score=69.77  Aligned_cols=85  Identities=16%  Similarity=0.252  Sum_probs=56.5

Q ss_pred             ceeeeecceeeEEEEEEEecCC---CCCeEEEe---------------eCCeecC---ccccccEEEe-----ecCeEEE
Q psy535           63 PTVQYLPFRLQGVVQCHIKANP---TFQYVTWT---------------KDKRLLE---PYQTKDIVVM-----QNGSLLF  116 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~---~~~~v~W~---------------~~~~~~~---~~~~~~~~~~-----~~~~l~i  116 (460)
                      +....+..|++++|.|......   ....|.|.               ++|....   +....|+...     .+.+|.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            4445677899999999996643   23479993               2333321   1112344332     3457999


Q ss_pred             eecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535          117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL  147 (460)
Q Consensus       117 ~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~  147 (460)
                      .+++.+|+|.|+|.+.|..+.......+.|.
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~  115 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY  115 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence            9999999999999999887655455555554

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.80  E-value=1.8e-08  Score=68.17  Aligned_cols=74  Identities=16%  Similarity=0.332  Sum_probs=51.0

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      |.+...+.......+. ++|.|.+.+.+++..+.|+.......  ..........+.|.|.++..+|.|.|+|.|.|
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            5566666555555555 99999999987566899991111111  12223334456799999999999999999976

...

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.79  E-value=6.5e-08  Score=65.13  Aligned_cols=64  Identities=27%  Similarity=0.493  Sum_probs=46.6

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCcc--CCcccEEE--ecceEEEcccc----ceeceEEEEEEecccceeeee
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVA--LPKNRVKI--VGGNITIEGLR----RVDFGYYECVVSNEVATIVQA  236 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~--~~~~~~~~--~~~~l~i~~~~----~~~~g~y~C~a~n~~g~~~~~  236 (460)
                      +.|.|.+   .|.|.|.+.|++++...  ....++..  .+++|.|..+.    ..|.|.|+|.|.|..|...+.
T Consensus         1 ~~l~C~~---~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEA---KGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEec---cccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            4689999   89999999999955422  12334443  35688888764    246899999999999976543

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.78  E-value=6.5e-08  Score=67.22  Aligned_cols=75  Identities=25%  Similarity=0.465  Sum_probs=56.8

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-----ecceEEEccccceeceEEEEEEecccceeeeee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-----VGGNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      .+..|+.+.|.|.+   .+.|.+.+.|++++...........     ....|.|.++..+|.|.|.|.+.|..|....++
T Consensus         5 ~~~~G~~~~l~C~~---~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~   81 (85)
T cd05729           5 AVPAGSTVRLKCPA---SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTY   81 (85)
T ss_pred             EecCCCcEEEEEEc---CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEE
Confidence            45679999999998   7889999999996544332222221     123588899999999999999999999877776


Q ss_pred             EEE
Q psy535          238 QLV  240 (460)
Q Consensus       238 ~l~  240 (460)
                      .|.
T Consensus        82 ~l~   84 (85)
T cd05729          82 KVD   84 (85)
T ss_pred             EEe
Confidence            654

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.78  E-value=6.6e-08  Score=67.58  Aligned_cols=76  Identities=20%  Similarity=0.339  Sum_probs=56.9

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc----ccEEEecceEEEccccceeceEEEEEEeccc-ceeeeee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK----NRVKIVGGNITIEGLRRVDFGYYECVVSNEV-ATIVQAA  237 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~-g~~~~~~  237 (460)
                      .+..|+.+.|.|.+   .+ |.+.+.|++++......    .++......|.|.++..+|+|.|+|.|.+.. +....+.
T Consensus         7 ~v~~g~~v~L~C~~---~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~   82 (89)
T cd04979           7 TVVEGNSVFLECSP---KS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATY   82 (89)
T ss_pred             EEECCCcEEEEEeC---CC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEE
Confidence            56789999999997   45 78899999966543322    3445555679999999999999999998654 4455556


Q ss_pred             EEEEe
Q psy535          238 QLVVE  242 (460)
Q Consensus       238 ~l~v~  242 (460)
                      .+.|.
T Consensus        83 ~l~V~   87 (89)
T cd04979          83 SLNVL   87 (89)
T ss_pred             EEEEe
Confidence            66654

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.78  E-value=9.6e-08  Score=66.38  Aligned_cols=69  Identities=16%  Similarity=0.325  Sum_probs=50.1

Q ss_pred             eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecC------ccccccEEEee-cC---eEEEeecCCCCCeEEEEEEEc
Q psy535           64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLE------PYQTKDIVVMQ-NG---SLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~-~~---~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      .+..+.+|+++.|.|.+.+.... .+.|++.+..+.      +....|+.... ++   +|.|.+++.+|+|.|.|.+..
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~-~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDS-VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCcc-EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            34678899999999999887543 588887664321      11334554433 22   599999999999999999975

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.76  E-value=3.3e-08  Score=66.77  Aligned_cols=67  Identities=22%  Similarity=0.385  Sum_probs=48.4

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCc----ccEEE----ecceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPK----NRVKI----VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ  238 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~----~~~~~----~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~  238 (460)
                      +.|.|.+.  .+.|.+.+.|++++..+...    .++..    ....|.|.++...|+|.|+|.+.|..|....+..
T Consensus         1 ~~L~C~a~--~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETV--SEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecc--cCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            46899973  45788899999955433211    11222    1357999999999999999999999998776543

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.75  E-value=1.1e-07  Score=66.19  Aligned_cols=76  Identities=17%  Similarity=0.310  Sum_probs=57.5

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCc-c-----CCcccEEEecceEEEccccceeceEEEEEEe-cccceeee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV-A-----LPKNRVKIVGGNITIEGLRRVDFGYYECVVS-NEVATIVQ  235 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~-~-----~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~-n~~g~~~~  235 (460)
                      .+..|+.+.|.|..    +.|.|.+.|++.+.. .     ....+.....+.|.|.++..+|+|.|+|.+. |..+....
T Consensus         7 ~~~eG~~v~L~C~~----~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~   82 (91)
T cd05871           7 YGVENNSTFLECLP----KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLA   82 (91)
T ss_pred             EEecCCcEEEEEEC----CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEE
Confidence            56789999999995    368899999974321 1     1234555666789999999999999999998 56666666


Q ss_pred             eeEEEEe
Q psy535          236 AAQLVVE  242 (460)
Q Consensus       236 ~~~l~v~  242 (460)
                      ..+|.|.
T Consensus        83 ~~~l~v~   89 (91)
T cd05871          83 KYTLHVI   89 (91)
T ss_pred             EEEEEEe
Confidence            7777664

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.75  E-value=6.2e-08  Score=68.39  Aligned_cols=75  Identities=20%  Similarity=0.279  Sum_probs=52.9

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCeecC----------------ccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRLLE----------------PYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~----------------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      |++|+|.|...... ...|.|+++.....                +....+.....+++|.|.+++.+|+|.|+|.+...
T Consensus         1 G~~VtL~c~~~~~~-~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSNLPEN-LQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEcccCCCC-CEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence            67899999887643 34799999653321                11234555666788999999999999999999876


Q ss_pred             CCCcceeeEEEEE
Q psy535          135 HGTQGSSGQMEVL  147 (460)
Q Consensus       135 ~g~~~~~~~~~v~  147 (460)
                      .+.. ....+.|.
T Consensus        80 ~~~~-~~~~~~l~   91 (92)
T cd05741          80 NGVT-ENAKFFLR   91 (92)
T ss_pred             CCcE-EEEEEEEE
Confidence            6443 44455443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.73  E-value=8e-08  Score=67.33  Aligned_cols=63  Identities=24%  Similarity=0.496  Sum_probs=49.4

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--------CcccEEEe-----cceEEEccccceeceEEEEEEec
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--------PKNRVKIV-----GGNITIEGLRRVDFGYYECVVSN  228 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--------~~~~~~~~-----~~~l~i~~~~~~~~g~y~C~a~n  228 (460)
                      .+..|+.+.|.|.+   .+.|.+.+.|.+.+...+        ...++...     ..+|.|.++..+|.|.|+|.+..
T Consensus         8 tv~~G~tv~L~C~v---~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           8 TVAVGGTVTLKCGV---KEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             EEecCCcEEEEEEE---eCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            67899999999999   788999999998654321        22333322     34799999999999999999986

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.71  E-value=1.1e-07  Score=66.90  Aligned_cols=74  Identities=22%  Similarity=0.399  Sum_probs=53.4

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCC--------CccCCcccEEEe-----cceEEEccccceeceEEEEEEecc
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRD--------GVALPKNRVKIV-----GGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~--------~~~~~~~~~~~~-----~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      .+..|++++|.|.+   .+.|.+.+.|++.+        .......++...     ..+|.|.+++.+|+|.|.|.+.+.
T Consensus         8 ~v~eG~~v~L~C~~---~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~   84 (95)
T cd07701           8 TVVEGGTANLTCRV---DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM   84 (95)
T ss_pred             EEecCCcEEEEEEE---ecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence            67899999999999   78899999998632        222234454431     247999999999999999999874


Q ss_pred             cceeeeeeEEE
Q psy535          230 VATIVQAAQLV  240 (460)
Q Consensus       230 ~g~~~~~~~l~  240 (460)
                      . .......|.
T Consensus        85 ~-~~~~~~~l~   94 (95)
T cd07701          85 P-VKTSKAYLT   94 (95)
T ss_pred             c-CccEEEEEE
Confidence            2 224444443

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.69  E-value=2.2e-07  Score=64.98  Aligned_cols=84  Identities=23%  Similarity=0.365  Sum_probs=58.4

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCC--cccEEEe--------cceEEEcccccee-
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALP--KNRVKIV--------GGNITIEGLRRVD-  218 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~--~~~~~~~--------~~~l~i~~~~~~~-  218 (460)
                      ||.+ ..... ..+..|+.+.|.|.+   .+.|.| .+.|...+..+..  ..++.+.        .+.|.|.++...| 
T Consensus         2 pP~i-~~~~s-~~~~~G~~~~L~C~~---~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~   76 (98)
T cd05898           2 PPII-SSEQV-QYAVRGERGKVKCFI---GSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADF   76 (98)
T ss_pred             CCEE-ecCce-EEEeCCCcEEEEEEE---ccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccC
Confidence            5655 23333 368899999999998   566776 5677764332212  2344442        2369999998767 


Q ss_pred             ceEEEEEEecccceeeeeeEE
Q psy535          219 FGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       219 ~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      .|.|.|.|.|.+|.....+.|
T Consensus        77 ~g~Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          77 QTHYNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             CcEEEEEEEeCCccceEEEEe
Confidence            789999999999998776654

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.68  E-value=9.1e-08  Score=66.30  Aligned_cols=69  Identities=23%  Similarity=0.357  Sum_probs=53.7

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--Ccc-cEEE-ecceEEEccccceeceEEEEEEeccccee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--PKN-RVKI-VGGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--~~~-~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      .+..|+.+.|.|...  .+.|.+.+.|++++....  ... ++.. .++.|.+.++...|.|.|.|.|.|.....
T Consensus        14 ~v~eG~~~~L~C~pP--~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          14 KVKEGWGVVLFCDPP--PHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             eeeeCCcEEEeeCCC--CCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            578899999999875  899999999999654321  122 2222 36899999999999999999999976443

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.67  E-value=8.6e-08  Score=65.58  Aligned_cols=65  Identities=18%  Similarity=0.187  Sum_probs=50.6

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEeccccee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      .+..|+.++|.|...  .+.+.+.+.|++++. .+..   ......|.|.++...|+|.|+|.+.+..|..
T Consensus        10 ~V~~G~~vtL~C~~~--~~~~~~~~~w~k~g~-~~~~---~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753          10 VVFEGEPLVLRCHGW--KNKPVYKVTYYRDGK-AKKY---SHSNSNLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             eecCCCCEEEEeeCC--CCCcceEEEEEECCe-Eccc---cCCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence            578999999999973  356677899999554 3321   1234679999999999999999999988754

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.67  E-value=8e-08  Score=68.04  Aligned_cols=78  Identities=13%  Similarity=0.206  Sum_probs=53.2

Q ss_pred             ceeeEEEEEEEecCCCCCeEEEeeCCeecCcc---------------ccccEEEee-cCeEEEeecCCCCCeEEEEEEEc
Q psy535           70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPY---------------QTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        70 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~---------------~~~~~~~~~-~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      .|++|+|.|..........+.|++....+...               ...|+.+.. +.+|.|.+++.+|+|.|.|.+.+
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            58999999987542223469999864322110               012333333 36799999999999999999988


Q ss_pred             CCCCcceeeEEEEEe
Q psy535          134 AHGTQGSSGQMEVLV  148 (460)
Q Consensus       134 ~~g~~~~~~~~~v~v  148 (460)
                      ..|.. ....+.|.|
T Consensus        83 ~~~~~-~~~~f~L~v   96 (97)
T cd05775          83 KNGVT-ITKEFTLHI   96 (97)
T ss_pred             CCCCe-EEEEEEEEe
Confidence            77554 566776665

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>PHA03376 BARF1; Provisional

Probab=98.66  E-value=4.8e-07  Score=68.82  Aligned_cols=123  Identities=16%  Similarity=0.165  Sum_probs=73.7

Q ss_pred             eeecceeeEEEEEEEecCC--CCCeEEEeeCCe----ec---------Cc--cccccEEE---eecCeEEEeecCCCCCe
Q psy535           66 QYLPFRLQGVVQCHIKANP--TFQYVTWTKDKR----LL---------EP--YQTKDIVV---MQNGSLLFTRVNQNHQG  125 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~--~~~~v~W~~~~~----~~---------~~--~~~~~~~~---~~~~~l~i~~~~~~d~G  125 (460)
                      +....|+.+.|.|......  ....|.|+|.+.    .+         .+  ....+..+   ..+-+|.|.+++.+|.|
T Consensus        21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG  100 (221)
T PHA03376         21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG  100 (221)
T ss_pred             hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence            4456799999999875221  224699999421    11         00  01222222   12226999999999999


Q ss_pred             EEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCC
Q psy535          126 RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG  194 (460)
Q Consensus       126 ~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~  194 (460)
                      .|+|.+............+  .+-.|-.+.+..... ....-+..++.|..   .|.|.|.+.|..+.+
T Consensus       101 tY~C~fQkge~~~~k~ehL--t~V~~~~Lsv~a~~~-dFp~~~~~~i~C~s---ggfP~P~~~Wle~~~  163 (221)
T PHA03376        101 NYLCRMKLGETEVTKQEHL--SVVKPLTLSVHSERS-QFPDFSVLTVTCTV---NAFPHPHVQWLMPEG  163 (221)
T ss_pred             eEEEEEEcCCCceeeeeee--eeeecceEEEEeccc-cCCCCCeeEEEEec---CCcCCchheeccccC
Confidence            9999998654332222222  222233333333221 23336677899996   899999999998555

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.64  E-value=1.6e-07  Score=60.76  Aligned_cols=63  Identities=35%  Similarity=0.619  Sum_probs=47.8

Q ss_pred             CCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccc
Q psy535          166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       166 ~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  231 (460)
                      .|+.+.|.|.+   .+.+.+.+.|++++...............|.|.++...|.|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~---~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPA---EGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeC---ccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            47889999997   6788899999995543332122223455799999999999999999988754

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.63  E-value=3.4e-07  Score=61.18  Aligned_cols=75  Identities=13%  Similarity=0.148  Sum_probs=50.9

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCcccccc----EEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD----IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR  149 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~  149 (460)
                      +.|.|.+.|..|++.|+|++++.++.......    -.....++|.|.....+|...|+|+|.|..-.. ......|.|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~-~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKD-LQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCC-ceeeEEEEEE
Confidence            68999999987777999999999986421110    001122358888777788888999999876432 4445555543

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.62  E-value=4.3e-07  Score=66.55  Aligned_cols=84  Identities=18%  Similarity=0.302  Sum_probs=52.6

Q ss_pred             ceeeeecceeeEEEEEEEecCCC---CCeEEEeeC----Cee--cC-------c----cccccEEEe-----ecCeEEEe
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPT---FQYVTWTKD----KRL--LE-------P----YQTKDIVVM-----QNGSLLFT  117 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~----~~~--~~-------~----~~~~~~~~~-----~~~~l~i~  117 (460)
                      |....+.+|++++|.|.....++   ...|.|++-    +.+  +.       .    ....+....     .+.+|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            45567788999999999865432   235999741    221  10       0    001222221     23469999


Q ss_pred             ecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535          118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEV  146 (460)
Q Consensus       118 ~~~~~d~G~y~C~~~~~~g~~~~~~~~~v  146 (460)
                      +++.+|+|.|+|.+.|..+.......+.|
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~  113 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPDVHGPIGEIRL  113 (115)
T ss_pred             eCChhhCEEEEEEEEeCCCCCCCccEEEE
Confidence            99999999999999987664333344444

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.58  E-value=2.5e-07  Score=63.99  Aligned_cols=69  Identities=20%  Similarity=0.340  Sum_probs=54.6

Q ss_pred             cccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEE-ecceEEEccccceece-EEEEEEecccce
Q psy535          162 YQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKI-VGGNITIEGLRRVDFG-YYECVVSNEVAT  232 (460)
Q Consensus       162 ~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~-~~~~l~i~~~~~~~~g-~y~C~a~n~~g~  232 (460)
                      ..+.+|+.+.|.|...  .|.|.|.+.|++++...+. ..|+.+ .+++|.|.++...|.| .|.|.|.|....
T Consensus        13 v~V~eG~~~~L~C~pP--~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          13 VEVEEGDSVVLPCNPP--KSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             eEEecCCCEEEEecCC--CCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence            3688999999999742  8999999999975543332 445555 3689999999999999 799999987533

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PHA03376 BARF1; Provisional

Probab=98.58  E-value=1e-06  Score=67.16  Aligned_cols=88  Identities=22%  Similarity=0.284  Sum_probs=57.5

Q ss_pred             cccceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecC
Q psy535            7 SLETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKAN   83 (460)
Q Consensus         7 ~~~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~   83 (460)
                      ++.+|+.+..+   -+|.|.+++.+|.|.|+|.+....... ...-.|++-.|-...+.......+.-....+.|.+.|.
T Consensus        73 EyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~~~-~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggf  151 (221)
T PHA03376         73 PFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAF  151 (221)
T ss_pred             ccccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCCCce-eeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCc
Confidence            56678888554   299999999999999999999876544 22233333222222222222222334456899998788


Q ss_pred             CCCCeEEEeeCCe
Q psy535           84 PTFQYVTWTKDKR   96 (460)
Q Consensus        84 ~~~~~v~W~~~~~   96 (460)
                      |.| .++|.-+..
T Consensus       152 P~P-~~~Wle~~~  163 (221)
T PHA03376        152 PHP-HVQWLMPEG  163 (221)
T ss_pred             CCc-hheeccccC
Confidence            876 899998654

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.57  E-value=5.9e-07  Score=65.20  Aligned_cols=77  Identities=19%  Similarity=0.287  Sum_probs=50.7

Q ss_pred             ceeeEEEEEEEecCC-----CCCeEEEeeCCe---e----c-C--------ccccccEEEee----cCeEEEeecCCCCC
Q psy535           70 FRLQGVVQCHIKANP-----TFQYVTWTKDKR---L----L-E--------PYQTKDIVVMQ----NGSLLFTRVNQNHQ  124 (460)
Q Consensus        70 ~g~~~~l~C~~~~~~-----~~~~v~W~~~~~---~----~-~--------~~~~~~~~~~~----~~~l~i~~~~~~d~  124 (460)
                      .|++++|.|.....|     ....|.|+|...   +    + .        .....++....    +.+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            378999999987653     234699999531   1    0 0        00123444321    23699999999999


Q ss_pred             eEEEEEEEcCCCCcceeeEEEEEe
Q psy535          125 GRYTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus       125 G~y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      |.|+|.+.+..+..  ...+.|.|
T Consensus        81 G~Y~C~v~~~~~~~--~~~~~l~v  102 (106)
T cd05877          81 GRYRCEVIDGLEDE--SVVVALRL  102 (106)
T ss_pred             EEEEEEEEecccce--EEEEEEEE
Confidence            99999998866654  45555554

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.57  E-value=3.6e-07  Score=66.82  Aligned_cols=74  Identities=11%  Similarity=0.154  Sum_probs=51.8

Q ss_pred             EcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCee---c---C------ccccccEEEee-----cCeEEEeecCCCC
Q psy535           61 FTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL---L---E------PYQTKDIVVMQ-----NGSLLFTRVNQNH  123 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~---~---~------~~~~~~~~~~~-----~~~l~i~~~~~~d  123 (460)
                      ..|....+.+|++++|.|.+.+.+. ..+.|++....   .   .      .....++.+..     ...|.|.+++.+|
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~-~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D   81 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTF-YYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD   81 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCc-cEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence            3566677889999999999987643 47999984311   0   0      01223443332     2369999999999


Q ss_pred             CeEEEEEEEcCC
Q psy535          124 QGRYTCTPYNAH  135 (460)
Q Consensus       124 ~G~y~C~~~~~~  135 (460)
                      +|.|.|.+.+..
T Consensus        82 sG~Y~C~~~~~~   93 (109)
T cd04983          82 SAVYFCALSESG   93 (109)
T ss_pred             CEEEEEEEecCC
Confidence            999999998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.55  E-value=1.2e-06  Score=63.23  Aligned_cols=78  Identities=15%  Similarity=0.293  Sum_probs=51.0

Q ss_pred             ceeeEEEEEEEecCCC-----------CCeEEEeeC--Ce-e--c---------CccccccEEEe------ecCeEEEee
Q psy535           70 FRLQGVVQCHIKANPT-----------FQYVTWTKD--KR-L--L---------EPYQTKDIVVM------QNGSLLFTR  118 (460)
Q Consensus        70 ~g~~~~l~C~~~~~~~-----------~~~v~W~~~--~~-~--~---------~~~~~~~~~~~------~~~~l~i~~  118 (460)
                      .|++++|.|.......           ...|.|+|-  |. +  +         ......|+.+.      .+.+|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            3789999999865421           347999983  21 1  1         11112344443      245799999


Q ss_pred             cCCCCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535          119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR  149 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~  149 (460)
                      ++.+|+|.|+|.+.++...  .+..+.|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~--~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIED--NYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCC--ceeEEEEEEE
Confidence            9999999999999864433  4556666654

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.54  E-value=9e-07  Score=61.69  Aligned_cols=74  Identities=22%  Similarity=0.405  Sum_probs=48.6

Q ss_pred             eEEEEEEEecCCCCCeEEEeeCCe----ecC-----------ccccccEEE----eecCeEEEeecCCCCCeEEEEEEE-
Q psy535           73 QGVVQCHIKANPTFQYVTWTKDKR----LLE-----------PYQTKDIVV----MQNGSLLFTRVNQNHQGRYTCTPY-  132 (460)
Q Consensus        73 ~~~l~C~~~~~~~~~~v~W~~~~~----~~~-----------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~-  132 (460)
                      +++|.|.....+....|+|.|...    .+.           +....|+..    ..+.+|.|.+++.+|+|.|+|++. 
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t   81 (96)
T cd05887           2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT   81 (96)
T ss_pred             CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence            589999987655556799988321    111           111234443    225689999999999999999975 


Q ss_pred             cCCCCcceeeEEEE
Q psy535          133 NAHGTQGSSGQMEV  146 (460)
Q Consensus       133 ~~~g~~~~~~~~~v  146 (460)
                      .+.|..+++..+.|
T Consensus        82 fP~G~~~~~~~l~~   95 (96)
T cd05887          82 FPLGNTQSSTTVTV   95 (96)
T ss_pred             CCCCCeeEEEEEEE
Confidence            45677655544443

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.54  E-value=6.3e-07  Score=61.78  Aligned_cols=73  Identities=21%  Similarity=0.368  Sum_probs=52.9

Q ss_pred             CCeEEEEeeeeccCCCC--CCeeEEEcCCCccCC---cc--cE-----EEecceEEEccccceeceEEEEEEecccceee
Q psy535          167 GESVDMHCEAQEAEGTQ--KPTITWQRRDGVALP---KN--RV-----KIVGGNITIEGLRRVDFGYYECVVSNEVATIV  234 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p--~~~~~W~~~~~~~~~---~~--~~-----~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  234 (460)
                      |+.+.|.|.+   .+.+  ...+.|...+.....   ..  +.     ......|.|.+++..|+|.|+|.|.|..|...
T Consensus         1 Ge~~~L~C~~---~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~   77 (86)
T cd05862           1 GEKLVLNCTA---RTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAK   77 (86)
T ss_pred             CCcEEEEEEE---EeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEec
Confidence            6889999998   4443  458899875543211   01  11     11245799999999999999999999998888


Q ss_pred             eeeEEEEe
Q psy535          235 QAAQLVVE  242 (460)
Q Consensus       235 ~~~~l~v~  242 (460)
                      ....|.|.
T Consensus        78 ~~t~~~V~   85 (86)
T cd05862          78 NSTIVIVH   85 (86)
T ss_pred             ccEEEEEe
Confidence            77777764

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.53  E-value=1.2e-06  Score=64.67  Aligned_cols=86  Identities=17%  Similarity=0.289  Sum_probs=53.3

Q ss_pred             cceeeeecceeeEEEEEEEecCCC---CCeEEEeeCCe------ecC------------ccccccEEEee-----cCeEE
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPT---FQYVTWTKDKR------LLE------------PYQTKDIVVMQ-----NGSLL  115 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~~~------~~~------------~~~~~~~~~~~-----~~~l~  115 (460)
                      .|....+.+|++++|.|.......   ...+.|++...      .+.            .....|+.+..     +.+|+
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            355567788999999998865421   13599986211      110            00012222222     24699


Q ss_pred             EeecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535          116 FTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL  147 (460)
Q Consensus       116 i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~  147 (460)
                      |.+++.+|+|.|.|.+.+..........+.|.
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  115 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR  115 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence            99999999999999999876543333344443

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.53  E-value=5.5e-07  Score=62.89  Aligned_cols=79  Identities=16%  Similarity=0.237  Sum_probs=52.3

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCe--EEEeeCCeecCcccccc---EEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQY--VTWTKDKRLLEPYQTKD---IVVMQNGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~--v~W~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      +.+.+....+.+|+.++|.|.+.+..+++.  |.|||++..+.......   .......+|.+.....+|.-.|+|+|.+
T Consensus         4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l   83 (100)
T cd05755           4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETEL   83 (100)
T ss_pred             EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEe
Confidence            445555555789999999999988766555  79999999886321111   0112233577765555555689999987


Q ss_pred             CCCC
Q psy535          134 AHGT  137 (460)
Q Consensus       134 ~~g~  137 (460)
                      ....
T Consensus        84 ~l~~   87 (100)
T cd05755          84 DLRP   87 (100)
T ss_pred             ccCc
Confidence            6543

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.52  E-value=7.5e-07  Score=63.66  Aligned_cols=75  Identities=15%  Similarity=0.328  Sum_probs=47.7

Q ss_pred             eeEEEEEEEecCC--CCCeEEEeeCCee---------------cCccccccEEEe----ecCeEEEeecCCCCCeEEEEE
Q psy535           72 LQGVVQCHIKANP--TFQYVTWTKDKRL---------------LEPYQTKDIVVM----QNGSLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        72 ~~~~l~C~~~~~~--~~~~v~W~~~~~~---------------~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~  130 (460)
                      ++|+|.|.....+  ....|.|+|....               +.+....+....    .+.+|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999987654  3346999995421               011112233322    245799999999999999999


Q ss_pred             EEc-CCCCcceeeEEEEEe
Q psy535          131 PYN-AHGTQGSSGQMEVLV  148 (460)
Q Consensus       131 ~~~-~~g~~~~~~~~~v~v  148 (460)
                      +.. +.|..  .+.+.|.|
T Consensus        81 v~~~~~g~~--~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNR--QKVTTLTV   97 (98)
T ss_pred             EEeCCCCcE--EEEEEEEe
Confidence            874 44554  44444443

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.52  E-value=1e-06  Score=61.29  Aligned_cols=78  Identities=19%  Similarity=0.284  Sum_probs=56.3

Q ss_pred             ccCCCCeEEEEeeeec--------cCCCCCCeeEEEcCCCccCC-------cccEEEecceEEEccccceeceEEEEEEe
Q psy535          163 QRKVGESVDMHCEAQE--------AEGTQKPTITWQRRDGVALP-------KNRVKIVGGNITIEGLRRVDFGYYECVVS  227 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~--------~~~~p~~~~~W~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  227 (460)
                      .+..|+.+.|.|....        ........+.|++++.....       ..|+...+..|.|.++..+|+|.|+|++.
T Consensus        11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~r   90 (104)
T cd05896          11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLR   90 (104)
T ss_pred             EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEEC
Confidence            5788999999999621        00222348999996422222       13667778899999999999999999999


Q ss_pred             cccceeeeeeEEE
Q psy535          228 NEVATIVQAAQLV  240 (460)
Q Consensus       228 n~~g~~~~~~~l~  240 (460)
                      |........+.|.
T Consensus        91 N~t~C~~~~i~l~  103 (104)
T cd05896          91 NSTYCMKVSMSLT  103 (104)
T ss_pred             CCCcceEEEEEEE
Confidence            9876665555443

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.52  E-value=6.4e-07  Score=65.44  Aligned_cols=72  Identities=11%  Similarity=0.169  Sum_probs=50.3

Q ss_pred             EcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCe--ecC--------------ccccccEEEee----cCeEEEeecC
Q psy535           61 FTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR--LLE--------------PYQTKDIVVMQ----NGSLLFTRVN  120 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~--~~~--------------~~~~~~~~~~~----~~~l~i~~~~  120 (460)
                      ..|....+.+|++++|.|.+.+ +. ..+.|||...  ...              .....++....    ...|.|.+++
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~-~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~   80 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GH-DNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE   80 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CC-CEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence            4667788899999999999977 43 4799999431  110              01122333222    2369999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy535          121 QNHQGRYTCTPYNA  134 (460)
Q Consensus       121 ~~d~G~y~C~~~~~  134 (460)
                      .+|+|.|.|.+.+.
T Consensus        81 ~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          81 PEDSAVYLCASSLG   94 (110)
T ss_pred             hhhCEEEEEEeeCC
Confidence            99999999998764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>KOG4802|consensus

Probab=98.52  E-value=1.4e-06  Score=74.43  Aligned_cols=138  Identities=22%  Similarity=0.338  Sum_probs=95.9

Q ss_pred             CCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCC---CCCCCCcEEEEccCCCCCCCcceEEEeec-c---eEEEE
Q psy535          289 KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG---DGMLSNIVVVKTKGPKPGPPRNVSVTEVN-N---GFVIS  361 (460)
Q Consensus       289 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G---~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~---~v~l~  361 (460)
                      -.|..+.... ....+...++.|+.-|+|++.|.|..|   -+.+|..+.....+.+|.+|.++++..+- +   ...|-
T Consensus       197 thwQtv~~t~-~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~  275 (516)
T KOG4802|consen  197 THWQTVEKTM-EENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVV  275 (516)
T ss_pred             ccceeeeecC-CCceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEE
Confidence            3566655433 344788999999999999999999876   45677777777777778899999987653 2   35667


Q ss_pred             ecCCCCCCccceEEEEEEEEcC-CeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEE
Q psy535          362 WQPPLERASLIQYYLIKYRTDG-SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV  440 (460)
Q Consensus       362 W~~~~~~~~~i~~y~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v  440 (460)
                      |-|+.. +-|+..|+|.|..-- +....     -.+.+++.                  -...++.|.+|.|+..|.+.|
T Consensus       276 w~P~~s-dlPv~~Yki~Ws~~v~s~k~~-----m~tks~~~------------------k~thq~si~~L~Pns~Y~Vev  331 (516)
T KOG4802|consen  276 WCPSKS-DLPVEKYKITWSLYVNSAKAS-----MITKSSYV------------------KDTHQFSIKELLPNSSYYVEV  331 (516)
T ss_pred             eCCCCC-CCcceeeEEEeehhhhhhhhh-----ccccccee------------------eccchhhhhhcCCCCeEEEEE
Confidence            776654 779999999987421 10000     00011110                  012244599999999999999


Q ss_pred             EEeecCCCCCC
Q psy535          441 VGKNELGDGML  451 (460)
Q Consensus       441 ~a~n~~G~s~~  451 (460)
                      .|....|.+..
T Consensus       332 qAi~y~g~~rL  342 (516)
T KOG4802|consen  332 QAISYLGSRRL  342 (516)
T ss_pred             EEEEeccCccc
Confidence            99999998764

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.50  E-value=1e-06  Score=63.94  Aligned_cols=78  Identities=19%  Similarity=0.317  Sum_probs=50.5

Q ss_pred             ceeeEEEEEEEecCC-----CCCeEEEeeCC-----e-ecCc----------cccccEEE----eecCeEEEeecCCCCC
Q psy535           70 FRLQGVVQCHIKANP-----TFQYVTWTKDK-----R-LLEP----------YQTKDIVV----MQNGSLLFTRVNQNHQ  124 (460)
Q Consensus        70 ~g~~~~l~C~~~~~~-----~~~~v~W~~~~-----~-~~~~----------~~~~~~~~----~~~~~l~i~~~~~~d~  124 (460)
                      .|++|+|.|.....+     ....|.|+|..     . .+..          ....++..    ..+.+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            378999999987653     24579999962     1 1100          01112211    1234799999999999


Q ss_pred             eEEEEEEEcCCCCcceeeEEEEEee
Q psy535          125 GRYTCTPYNAHGTQGSSGQMEVLVR  149 (460)
Q Consensus       125 G~y~C~~~~~~g~~~~~~~~~v~v~  149 (460)
                      |.|+|.+.+..+.  ....+.|.|.
T Consensus        81 G~Y~C~v~~~~~~--~~~~v~L~V~  103 (106)
T cd05714          81 GRYRCEVIDGIED--EQDTVELEVR  103 (106)
T ss_pred             EEEEEEEEcCCCc--eEEEEEEEEE
Confidence            9999999986544  4556666654

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=98.48  E-value=9.7e-07  Score=61.23  Aligned_cols=81  Identities=35%  Similarity=0.529  Sum_probs=61.0

Q ss_pred             CCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCC-eeeeeccCCCCceEEEccCccCccEEEEEEEEcCC
Q psy535          248 APYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD-WLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL  325 (460)
Q Consensus       248 ~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~  325 (460)
                      +|.++.. .....++.|+|.++. .....+..|.+.++...... +....... ....+.|.+|.+++.|.|++.|.|..
T Consensus         2 ~P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~-~~~~~~i~~L~p~t~Y~~~v~a~~~~   79 (85)
T PF00041_consen    2 APENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPG-NETSYTITGLQPGTTYEFRVRAVNSD   79 (85)
T ss_dssp             SSEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEET-TSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred             cCcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeee-eeeeeeeccCCCCCEEEEEEEEEeCC
Confidence            3455554 347889999999876 33444579999998877655 55554443 45589999999999999999999999


Q ss_pred             CCCCC
Q psy535          326 GDGML  330 (460)
Q Consensus       326 G~~~~  330 (460)
                      |.|.+
T Consensus        80 g~g~~   84 (85)
T PF00041_consen   80 GEGPP   84 (85)
T ss_dssp             EEEEE
T ss_pred             cCcCC
Confidence            87754

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.47  E-value=1.7e-06  Score=61.24  Aligned_cols=74  Identities=19%  Similarity=0.403  Sum_probs=52.1

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc--------CCcccEEEe-----cceEEEccccceeceEEEEEEecc
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA--------LPKNRVKIV-----GGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~-----~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      .+..|+.++|.|.+   .+.+.+.+.|++.++..        ....++...     ...|.|.+++..|+|.|.|.+.+.
T Consensus         8 ~v~~G~~v~L~C~~---~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           8 TVVEGGTATLKCRV---KNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             EEcCCCCEEEEEEE---CCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            57889999999998   66778899998533221        122344431     236899999999999999999876


Q ss_pred             cceeeeeeEEE
Q psy535          230 VATIVQAAQLV  240 (460)
Q Consensus       230 ~g~~~~~~~l~  240 (460)
                      .. ......|.
T Consensus        85 ~~-~~~~~~~~   94 (95)
T cd05717          85 PV-QTAKATVT   94 (95)
T ss_pred             CC-ceEEEEEE
Confidence            43 34444443

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.47  E-value=1.6e-06  Score=62.86  Aligned_cols=77  Identities=16%  Similarity=0.291  Sum_probs=50.2

Q ss_pred             eeeEEEEEEEecCCC---------CCeEEEeeC--Ceec------------CccccccEEEe------ecCeEEEeecCC
Q psy535           71 RLQGVVQCHIKANPT---------FQYVTWTKD--KRLL------------EPYQTKDIVVM------QNGSLLFTRVNQ  121 (460)
Q Consensus        71 g~~~~l~C~~~~~~~---------~~~v~W~~~--~~~~------------~~~~~~~~~~~------~~~~l~i~~~~~  121 (460)
                      |++++|.|.....+.         ...|.|+|.  +...            ......|....      .+.+|.|.+++.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~   81 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS   81 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence            789999999876542         257999984  2110            11112344332      234699999999


Q ss_pred             CCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535          122 NHQGRYTCTPYNAHGTQGSSGQMEVLVR  149 (460)
Q Consensus       122 ~d~G~y~C~~~~~~g~~~~~~~~~v~v~  149 (460)
                      +|+|.|.|.+......  ..+.+.|.|.
T Consensus        82 sD~G~Y~C~v~~~~~~--~~~~v~l~V~  107 (110)
T cd05878          82 SDSGVYRCEVMHGIED--EQDTVPLEVT  107 (110)
T ss_pred             hhCEEEEEEEEeCCCc--ceEEEEEEEE
Confidence            9999999999875443  3455556553

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.47  E-value=8.9e-07  Score=57.43  Aligned_cols=58  Identities=28%  Similarity=0.509  Sum_probs=43.5

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe--cc----eEEEccccceeceEEEEEE
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GG----NITIEGLRRVDFGYYECVV  226 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~--~~----~l~i~~~~~~~~g~y~C~a  226 (460)
                      |+.++|.|.+.  .+.+...+.|.+++............  ..    .|.|.++..+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~--~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVS--SGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEE--ESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecC--CCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            78999999983  57778899999966655433332221  12    2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.47  E-value=8e-07  Score=62.43  Aligned_cols=88  Identities=16%  Similarity=0.166  Sum_probs=53.9

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcccc-ccEEEeecCeEEEeecCCCCCeEEEEEEEcC-
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQT-KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA-  134 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~-  134 (460)
                      |.+...| ...+..|++|+|.|.... .. ..+.|+|+|........ ..........|.|.+++.+|+|.|+|..... 
T Consensus         2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~-~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~~~   78 (94)
T cd05711           2 PFLSAHP-SPVVPSGENVTLQCHSDI-RF-DRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSYNH   78 (94)
T ss_pred             CEEEecC-CCccCCCCeEEEEEecCC-CC-CEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEECCC
Confidence            3343334 456778999999998755 22 37999998876432110 0000111236899999999999999997532 


Q ss_pred             --CCCcceeeEEEEE
Q psy535          135 --HGTQGSSGQMEVL  147 (460)
Q Consensus       135 --~g~~~~~~~~~v~  147 (460)
                        ......+..+.|.
T Consensus        79 ~~~~wS~~Sdpl~l~   93 (94)
T cd05711          79 SLYEWSAPSDPLKIV   93 (94)
T ss_pred             CCccccCCCCCeEEe
Confidence              2233344455443

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.46  E-value=7.4e-07  Score=62.02  Aligned_cols=68  Identities=18%  Similarity=0.390  Sum_probs=49.3

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC--------------cccEEEe-------cceEEEccccceeceE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--------------KNRVKIV-------GGNITIEGLRRVDFGY  221 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~--------------~~~~~~~-------~~~l~i~~~~~~~~g~  221 (460)
                      .+..|++++|.|.+   .+.+.+.+.|++.+.....              ..++...       ..+|.|.++..+|+|.
T Consensus         3 ~~~~G~~VtL~C~~---s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgt   79 (94)
T cd07690           3 LGKKGDTAELPCTA---SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDT   79 (94)
T ss_pred             EeeCCCCEEEEEEe---CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEE
Confidence            46789999999998   6788899999864322211              1111111       1259999999999999


Q ss_pred             EEEEEeccccee
Q psy535          222 YECVVSNEVATI  233 (460)
Q Consensus       222 y~C~a~n~~g~~  233 (460)
                      |.|.+.|..++.
T Consensus        80 Y~C~v~~~~~~~   91 (94)
T cd07690          80 YICEVEDKKEEV   91 (94)
T ss_pred             EEEEECCccceE
Confidence            999999887654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.46  E-value=1.4e-06  Score=62.48  Aligned_cols=76  Identities=17%  Similarity=0.265  Sum_probs=47.4

Q ss_pred             eeeEEEEEEEecCC--CCCeEEEeeCCe--ec---------C----ccccccEEEee------cCeEEEeecCCCCCeEE
Q psy535           71 RLQGVVQCHIKANP--TFQYVTWTKDKR--LL---------E----PYQTKDIVVMQ------NGSLLFTRVNQNHQGRY  127 (460)
Q Consensus        71 g~~~~l~C~~~~~~--~~~~v~W~~~~~--~~---------~----~~~~~~~~~~~------~~~l~i~~~~~~d~G~y  127 (460)
                      |++++|.|......  ....+.|++...  .+         .    .....|..+..      +.+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            57899999985321  223588887431  11         0    00112433321      24699999999999999


Q ss_pred             EEEEEcCCCCcceeeEEEEEe
Q psy535          128 TCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus       128 ~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      +|.+.+..+.  ....+.|.|
T Consensus        81 ~C~v~~~~~~--~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFY--EEATVELKV   99 (100)
T ss_pred             EEEEecCCcE--EEEEEEEEE
Confidence            9999986655  445555544

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>KOG0196|consensus

Probab=98.45  E-value=1.7e-05  Score=74.48  Aligned_cols=135  Identities=21%  Similarity=0.245  Sum_probs=97.8

Q ss_pred             ecceEEEccccceeceEEEEEEeccccee------eeeeEEEEecCCCCCCCcee-eeeecceEEEEeecCCCCCCCcee
Q psy535          205 VGGNITIEGLRRVDFGYYECVVSNEVATI------VQAAQLVVEGTQPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQ  277 (460)
Q Consensus       205 ~~~~l~i~~~~~~~~g~y~C~a~n~~g~~------~~~~~l~v~~~~p~~p~~~~-~~~~~~~~~l~w~~~~~~~~~~~~  277 (460)
                      ....+.+.++..+..+.|...|.|....-      ...+.+......|.+-..+. ......+++|+|..+...++.+ .
T Consensus       396 t~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~i-l  474 (996)
T KOG0196|consen  396 TETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVI-L  474 (996)
T ss_pred             ccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCcc-e
Confidence            45578899999999999999999876432      22333433332333323333 4567789999999877666664 7


Q ss_pred             eEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCC
Q psy535          278 NYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGP  341 (460)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~  341 (460)
                      .|.+.|++..... ..........++.+|.+|.|++.|.|+++|+...|.|..|....+.+...
T Consensus       475 dYEvky~ek~~~e-~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~  537 (996)
T KOG0196|consen  475 DYEVKYYEKDEDE-RSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS  537 (996)
T ss_pred             eEEEEEeeccccc-cceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence            9999998875422 22222233567899999999999999999999999999999999987753

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.42  E-value=4.5e-05  Score=66.21  Aligned_cols=163  Identities=11%  Similarity=0.085  Sum_probs=97.7

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCC--CeEEEeeCC
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTF--QYVTWTKDK   95 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~   95 (460)
                      .|.|..++.+.+|.|+=...+..+.. ..+.+.|..+.+|.+.+.+..  +.+|+...-.|.+..+.++  ..+.||+||
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng  260 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA--VLEGEPFGATCVAANYYPGDRAAFRWFEGG  260 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            59999999999999999988766542 345566666778887766543  6689999999999886443  459999999


Q ss_pred             eecCccccc--cEEEeecCeEEEeecCCCCC------eEEEEEEE-cCCCC--cceeeEEEEEeeCCCceeeCCCccccc
Q psy535           96 RLLEPYQTK--DIVVMQNGSLLFTRVNQNHQ------GRYTCTPY-NAHGT--QGSSGQMEVLVRKPPAFTIKPEAMYQR  164 (460)
Q Consensus        96 ~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~------G~y~C~~~-~~~g~--~~~~~~~~v~v~~~p~~~~~~~~~~~~  164 (460)
                      .++......  ......++--.+.-+..++.      =..+|.+. ...+.  ...++...-.|..+|.+++.      .
T Consensus       261 ~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~------F  334 (466)
T PHA03270        261 DEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEME------F  334 (466)
T ss_pred             ccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEE------E
Confidence            988632211  11112222122223333332      25799874 33222  22333444445666766553      2


Q ss_pred             CCCCeEEEEeeeeccCCCC-CCeeEEEcCCCc
Q psy535          165 KVGESVDMHCEAQEAEGTQ-KPTITWQRRDGV  195 (460)
Q Consensus       165 ~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~~  195 (460)
                      ..|.   ..|.+   .--| ...+.|.-+++.
T Consensus       335 ~dG~---AVCtA---~CVPegV~l~W~V~D~~  360 (466)
T PHA03270        335 GGDE---AVCTA---ACVPEGVTLAWLLGADP  360 (466)
T ss_pred             eCCE---EEEec---cccCCCCEEEEEecCCC
Confidence            3333   23443   2222 348999875543

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.41  E-value=1.7e-06  Score=59.19  Aligned_cols=70  Identities=21%  Similarity=0.459  Sum_probs=51.0

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccc-eeeeeeEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA-TIVQAAQLVV  241 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g-~~~~~~~l~v  241 (460)
                      .+..|+.++|.|.+   .+.|.+.+.|++++ ..+.     .....+.+..+...+.|.|+|.+.+..+ ..+..+.|.|
T Consensus        10 ~v~~g~~~~l~C~~---~~~p~~~~~w~~~~-~~~~-----~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   10 SVEEGDSVTLTCSV---SGNPPPQVQWYKNG-SPIN-----SSQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             EEETTSEEEEEEEE---ESSSSSEEEEEETT-EEEE-----EESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEE---Ecccceeeeeeeee-eeee-----eeeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            46789999999998   58788999999843 3322     1222377788999999999999998654 3444455443

...

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.41  E-value=4.1e-06  Score=59.04  Aligned_cols=74  Identities=20%  Similarity=0.407  Sum_probs=46.9

Q ss_pred             eEEEEEEEecCCC---CCeEEEeeCC--e--e-----------cCccccccEEEee----cCeEEEeecCCCCCeEEEEE
Q psy535           73 QGVVQCHIKANPT---FQYVTWTKDK--R--L-----------LEPYQTKDIVVMQ----NGSLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        73 ~~~l~C~~~~~~~---~~~v~W~~~~--~--~-----------~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C~  130 (460)
                      +++|.|.....++   ...|+|.+..  .  .           +.+....|+....    +.+|.|.+++.+|+|.|+|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            5789998874322   2258998731  1  1           1111223444332    36899999999999999999


Q ss_pred             EEc-CCCCcceeeEEEEEe
Q psy535          131 PYN-AHGTQGSSGQMEVLV  148 (460)
Q Consensus       131 ~~~-~~g~~~~~~~~~v~v  148 (460)
                      +.+ +.|.  .++.+.|.|
T Consensus        82 v~t~P~g~--~~~~~~L~V   98 (99)
T cd05886          82 FATFPTGN--RESQLNLTV   98 (99)
T ss_pred             EEeCCCCC--eEEEEEEEE
Confidence            998 5665  445555544

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.40  E-value=1.5e-06  Score=62.97  Aligned_cols=74  Identities=18%  Similarity=0.321  Sum_probs=49.8

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--ee---cC-------ccccccEEEeec---CeEEEeecCCCCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RL---LE-------PYQTKDIVVMQN---GSLLFTRVNQNHQ  124 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~---~~-------~~~~~~~~~~~~---~~l~i~~~~~~d~  124 (460)
                      ...|....+.+|++++|.|.+.+......+.|||..  ..   +.       .....++.....   ..|.|.+++.+|+
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA   83 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence            456677788999999999998765423469999832  11   10       001123333222   2599999999999


Q ss_pred             eEEEEEEEc
Q psy535          125 GRYTCTPYN  133 (460)
Q Consensus       125 G~y~C~~~~  133 (460)
                      |.|.|.+.+
T Consensus        84 g~Y~Ca~~~   92 (106)
T cd04980          84 AVYYCQQYG   92 (106)
T ss_pred             EEEEEEEeC
Confidence            999999864

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.40  E-value=2.9e-06  Score=60.26  Aligned_cols=76  Identities=21%  Similarity=0.336  Sum_probs=46.4

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCee----cC-----------ccccccEEEe----ecCeEEEeecCCCCCeEEEEEE
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRL----LE-----------PYQTKDIVVM----QNGSLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~----~~-----------~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~  131 (460)
                      |++++|.|..........|.|+|....    +.           .....+....    .+.+|.|.+++.+|+|.|+|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            678999998765433336999984211    00           0011122221    2346999999999999999998


Q ss_pred             Ec-CCCCcceeeEEEEEe
Q psy535          132 YN-AHGTQGSSGQMEVLV  148 (460)
Q Consensus       132 ~~-~~g~~~~~~~~~v~v  148 (460)
                      .. +.|.  .+..+.|.|
T Consensus        81 ~~~p~g~--~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGS--KSGTMCLTV   96 (97)
T ss_pred             EeCCCCC--eeeEEEEEE
Confidence            64 4454  344444443

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.39  E-value=1.6e-06  Score=62.94  Aligned_cols=70  Identities=13%  Similarity=0.172  Sum_probs=48.0

Q ss_pred             eecceeeEEEEEEEecCCCCCeEEEeeCCee-----c----------CccccccEEEeec-----CeEEEeecCCCCCeE
Q psy535           67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRL-----L----------EPYQTKDIVVMQN-----GSLLFTRVNQNHQGR  126 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-----~----------~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~  126 (460)
                      .+.+|++++|.|.+........+.|++....     +          .+....++....+     .+|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            4678999999999987523447999994321     1          0111233333222     269999999999999


Q ss_pred             EEEEEEcCCC
Q psy535          127 YTCTPYNAHG  136 (460)
Q Consensus       127 y~C~~~~~~g  136 (460)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.39  E-value=9e-07  Score=63.06  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=33.9

Q ss_pred             cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCC
Q psy535            7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGE   43 (460)
Q Consensus         7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~   43 (460)
                      .+++|..+..||+|.|.+++.+|+|.|+|.+.+....
T Consensus        59 ~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~   95 (105)
T cd05774          59 AYSGRETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQ   95 (105)
T ss_pred             ccCCcEEEeCCCcEEEecCCcccCEEEEEEEEeCCcc
Confidence            5689999999999999999999999999999987644

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.36  E-value=3.9e-06  Score=55.91  Aligned_cols=76  Identities=13%  Similarity=0.183  Sum_probs=51.9

Q ss_pred             eeecceeeEEEEEEEecCCC-CCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535           66 QYLPFRLQGVVQCHIKANPT-FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM  144 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~  144 (460)
                      ..+..|++++|+|.....+. .+.|+|+..+....     ........+|.+..+...|+|.++|.+...  .....+.+
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-----~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~--~k~~~~~~   81 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-----QILNQDKKTLNLVQLGPNDSGTWDCIVSVN--SSEKTLKL   81 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-----eeccCCccEEEeceeCcccCCEEEEEEEEC--ceEEEEEe
Confidence            35678999999999865433 23699998766532     111234557999999999999999999744  22234444


Q ss_pred             EEEe
Q psy535          145 EVLV  148 (460)
Q Consensus       145 ~v~v  148 (460)
                      .|.|
T Consensus        82 ~V~V   85 (88)
T cd07694          82 DIKV   85 (88)
T ss_pred             eEEE
Confidence            4443

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.36  E-value=1.3e-06  Score=62.04  Aligned_cols=69  Identities=22%  Similarity=0.238  Sum_probs=47.8

Q ss_pred             cceeeEEEEEEEecC-CCCCeEEEeeCCeecCcccc-ccEEEeecCe------EEEeecCCCCCeEEEEEEEcCCCC
Q psy535           69 PFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQT-KDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        69 ~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      ..|+.++|.|.+.|. |+...++|+++|..+..... .......+++      |.|......|.|.|+|+|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            357899999999998 55568999999998864322 2222233333      555555556999999999876543

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.36  E-value=4.5e-06  Score=57.01  Aligned_cols=63  Identities=13%  Similarity=0.135  Sum_probs=40.8

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC------eEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG------SLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      +.|.|.+.+..+++.|+|++++..+.... .......++      .|.+.....++.+.|+|+|.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            68999998874445899999999875321 111111222      3555444556678999999987544

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>smart00060 FN3 Fibronectin type 3 domain

Probab=98.35  E-value=5.9e-06  Score=56.57  Aligned_cols=79  Identities=37%  Similarity=0.706  Sum_probs=52.2

Q ss_pred             CCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcc
Q psy535          345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGST  423 (460)
Q Consensus       345 ~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (460)
                      +|.++.+.... +++.|+|+++.....  .+|.++|........                      ..|...... ....
T Consensus         3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~--~~y~~~~~~~~~~~~----------------------~~~~~~~~~-~~~~   57 (83)
T smart00060        3 PPSNLRVTDVTSTSVTLSWEPPPDDGI--TGYIVGYRVEYREEG----------------------SSWKEVNVT-PSST   57 (83)
T ss_pred             CCCcEEEEEEeCCEEEEEECCCCCCCC--CccEEEEEEEEecCC----------------------CccEEEEec-CCcc
Confidence            44456666554 489999997754332  778888875432000                      112222221 1257


Q ss_pred             eEEECCCCcCceEEEEEEEeecCCC
Q psy535          424 QITINRLTPATTYEFQVVGKNELGD  448 (460)
Q Consensus       424 ~~~i~~L~p~~~Y~~~v~a~n~~G~  448 (460)
                      .+.+.+|.|++.|.|+|.|.+..|.
T Consensus        58 ~~~i~~L~~~~~Y~v~v~a~~~~g~   82 (83)
T smart00060       58 SYTLTGLKPGTEYEFRVRAVNGAGE   82 (83)
T ss_pred             EEEEeCcCCCCEEEEEEEEEcccCC
Confidence            8999999999999999999998764

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.35  E-value=3.7e-06  Score=56.11  Aligned_cols=61  Identities=20%  Similarity=0.269  Sum_probs=45.7

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCccc-------EEEecceEEEccccceeceEEEEEEeccccee
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNR-------VKIVGGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      ++|.|...  .+.|.+.++|++++. .+....       .....+.|.+......|.+.|+|.|.|..+..
T Consensus         2 ~~L~C~s~--~skP~a~i~W~k~~~-~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSP--RSKPAATLRWYRDRK-ELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCC--CccCCCeEEEEECCE-ECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            68999985  889999999999554 433211       11233468888888999999999999987754

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.33  E-value=4.1e-06  Score=60.22  Aligned_cols=77  Identities=17%  Similarity=0.303  Sum_probs=49.4

Q ss_pred             eeeEEEEEEEecCC------CCCeEEEeeCC-----ee------------cCccccccEEEee------cCeEEEeecCC
Q psy535           71 RLQGVVQCHIKANP------TFQYVTWTKDK-----RL------------LEPYQTKDIVVMQ------NGSLLFTRVNQ  121 (460)
Q Consensus        71 g~~~~l~C~~~~~~------~~~~v~W~~~~-----~~------------~~~~~~~~~~~~~------~~~l~i~~~~~  121 (460)
                      |.+++|.|...-.|      ..+.|.|.|..     ..            ..+....|..+..      +.+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            67899999965332      23579999741     11            1112233444433      34799999999


Q ss_pred             CCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535          122 NHQGRYTCTPYNAHGTQGSSGQMEVLVR  149 (460)
Q Consensus       122 ~d~G~y~C~~~~~~g~~~~~~~~~v~v~  149 (460)
                      +|+|.|+|.+......  ....+.|.|.
T Consensus        82 ~D~G~Y~C~v~~g~~~--~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGIND--EQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCcc--cEEEEEEEEE
Confidence            9999999999874433  4555566553

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.33  E-value=4e-06  Score=61.90  Aligned_cols=74  Identities=18%  Similarity=0.310  Sum_probs=50.3

Q ss_pred             EcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCe-----ecC------------ccccccEEEeecC-----eEEEee
Q psy535           61 FTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR-----LLE------------PYQTKDIVVMQNG-----SLLFTR  118 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-----~~~------------~~~~~~~~~~~~~-----~l~i~~  118 (460)
                      ..|....+.+|+++.|.|..........+.|++...     .+.            .....+..+..+.     +|.|.+
T Consensus         6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~   85 (114)
T PF07686_consen    6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN   85 (114)
T ss_dssp             EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred             EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence            346677788999999999998212334799999322     111            0112233333332     499999


Q ss_pred             cCCCCCeEEEEEEEcC
Q psy535          119 VNQNHQGRYTCTPYNA  134 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~  134 (460)
                      ++.+|+|.|.|.+...
T Consensus        86 l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   86 LQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             ESGGGEEEEEEEEEES
T ss_pred             CCcCcCEEEEEEEEEC
Confidence            9999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.33  E-value=6.3e-06  Score=56.24  Aligned_cols=63  Identities=14%  Similarity=0.264  Sum_probs=41.8

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec-Ce------EEEeecCCCCCeEEEEEEEcCCCC
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GS------LLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~------l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      +.|.|.+.+..++..|+|+++|..+.... .......+ ++      |.|.....+|...|+|+|.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~-~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAP-TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcc-eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            68999998874445999999999876422 11222222 23      444455566779999999987543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.32  E-value=6e-06  Score=55.96  Aligned_cols=62  Identities=13%  Similarity=0.182  Sum_probs=50.2

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEec
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSN  228 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  228 (460)
                      .+..|+++.|.|..    ..+.+.+.|..++..+....++......|.|..++..|+|.|.|.+..
T Consensus         7 tv~~g~~v~L~C~~----~s~~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E   68 (85)
T cd05872           7 TVAPGADVVLPCQL----RSNLASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEE   68 (85)
T ss_pred             EEecCCCEEEECCC----CCCCccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEec
Confidence            57789999999996    445779999996665544556666667788999999999999999873

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>smart00409 IG Immunoglobulin

Probab=98.32  E-value=9.9e-06  Score=56.05  Aligned_cols=76  Identities=30%  Similarity=0.588  Sum_probs=56.3

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEEec----ceEEEccccceeceEEEEEEecccceeeeee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKIVG----GNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~----~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      .+..|+.+.|.|.+   .+.+.+.+.|+++++..+. ..+.....    ..|.|.++...|.|.|.|.+.+..+......
T Consensus         5 ~~~~g~~~~l~C~~---~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00409        5 TVKEGESVTLSCEV---SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             EEeCCCeEEEEEEE---ccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence            46789999999999   5557889999996233332 33333322    4699999999999999999998877766555


Q ss_pred             EEEE
Q psy535          238 QLVV  241 (460)
Q Consensus       238 ~l~v  241 (460)
                      .|.|
T Consensus        82 ~l~V   85 (86)
T smart00409       82 TLTV   85 (86)
T ss_pred             EEEE
Confidence            5544

>smart00410 IG_like Immunoglobulin like

Probab=98.32  E-value=9.9e-06  Score=56.05  Aligned_cols=76  Identities=30%  Similarity=0.588  Sum_probs=56.3

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEEec----ceEEEccccceeceEEEEEEecccceeeeee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKIVG----GNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~----~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      .+..|+.+.|.|.+   .+.+.+.+.|+++++..+. ..+.....    ..|.|.++...|.|.|.|.+.+..+......
T Consensus         5 ~~~~g~~~~l~C~~---~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00410        5 TVKEGESVTLSCEV---SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             EEeCCCeEEEEEEE---ccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence            46789999999999   5557889999996233332 33333322    4699999999999999999998877766555


Q ss_pred             EEEE
Q psy535          238 QLVV  241 (460)
Q Consensus       238 ~l~v  241 (460)
                      .|.|
T Consensus        82 ~l~V   85 (86)
T smart00410       82 TLTV   85 (86)
T ss_pred             EEEE
Confidence            5544

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.32  E-value=7.2e-06  Score=58.44  Aligned_cols=74  Identities=16%  Similarity=0.381  Sum_probs=46.3

Q ss_pred             eEEEEEEEecCC--CCCeEEEeeCCe---e--cC-----------ccccccEEEee-----cCeEEEeecCCCCCeEEEE
Q psy535           73 QGVVQCHIKANP--TFQYVTWTKDKR---L--LE-----------PYQTKDIVVMQ-----NGSLLFTRVNQNHQGRYTC  129 (460)
Q Consensus        73 ~~~l~C~~~~~~--~~~~v~W~~~~~---~--~~-----------~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C  129 (460)
                      +++|.|......  ....|.|+|...   +  +.           +....|.....     +.+|.|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            588999886543  233699998321   1  10           00112333322     4479999999999999999


Q ss_pred             EEEc-CCCCcceeeEEEEEe
Q psy535          130 TPYN-AHGTQGSSGQMEVLV  148 (460)
Q Consensus       130 ~~~~-~~g~~~~~~~~~v~v  148 (460)
                      .+.+ +.|..  .+.+.|.|
T Consensus        82 ~v~~~p~g~~--~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNF--EAELVLTV   99 (100)
T ss_pred             EEEeCCCCCe--eeEEEEEe
Confidence            9987 45553  55555544

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.32  E-value=9.1e-06  Score=62.56  Aligned_cols=86  Identities=15%  Similarity=0.266  Sum_probs=55.3

Q ss_pred             eeeecceeeEEEEEEEecCCCCCeEEEeeCCeec----------CccccccEEEe----ecCeEEEeecCCCCCeEEEEE
Q psy535           65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL----------EPYQTKDIVVM----QNGSLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~----------~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~  130 (460)
                      ...+.+|++++|.|..........+.|+|....+          .+....++...    .+..|.|.++..+|+|.|+|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            3557889999999998522233479999963221          11112333321    345799999999999999998


Q ss_pred             EEcC-CCCcceeeEEEEEeeCC
Q psy535          131 PYNA-HGTQGSSGQMEVLVRKP  151 (460)
Q Consensus       131 ~~~~-~g~~~~~~~~~v~v~~~  151 (460)
                      ..-- .| ...++...|.|..+
T Consensus       104 F~tfp~G-~~~~gt~CLtVt~~  124 (189)
T PHA02987        104 FNTLLSK-NNEKGVVCLNVTTD  124 (189)
T ss_pred             EEecCCC-CCceeEEEEEEEch
Confidence            7543 33 13566666666543

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.31  E-value=8.7e-06  Score=56.84  Aligned_cols=66  Identities=20%  Similarity=0.381  Sum_probs=43.1

Q ss_pred             eEEEEEEEecCCCCCeEEEeeCCe----ec-----------CccccccEEEe----ecCeEEEeecCCCCCeEEEEEEEc
Q psy535           73 QGVVQCHIKANPTFQYVTWTKDKR----LL-----------EPYQTKDIVVM----QNGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        73 ~~~l~C~~~~~~~~~~v~W~~~~~----~~-----------~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      .++|.|..........|+|.|...    .+           ......|+...    .+.+|.|.+++.+|+|.|+|.+..
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t   81 (96)
T cd05889           2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVT   81 (96)
T ss_pred             CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEe
Confidence            578999886543445688998421    11           11112344433    246899999999999999999865


Q ss_pred             -CCCCc
Q psy535          134 -AHGTQ  138 (460)
Q Consensus       134 -~~g~~  138 (460)
                       +.|..
T Consensus        82 ~P~g~~   87 (96)
T cd05889          82 YPQGSW   87 (96)
T ss_pred             CCCCCe
Confidence             34543

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.31  E-value=4.5e-06  Score=58.34  Aligned_cols=72  Identities=17%  Similarity=0.277  Sum_probs=50.8

Q ss_pred             CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-ccEEEecceEEEccccceeceEEEEEEecc
Q psy535          152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRVKIVGGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      |.+...|..  .+..|++++|.|..    ..+...+.|++++...... .......+.+.|.++...|+|.|+|...+.
T Consensus         3 P~L~a~p~~--vV~~G~~VtL~C~~----~~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           3 PSLWAEPSS--VVPLGKPVTLRCQG----PYGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CEEEecCCC--ccCCCCcEEEEEec----CCCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            455555544  57899999999985    4667789999854422111 111123456999999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.30  E-value=8.6e-06  Score=56.59  Aligned_cols=77  Identities=23%  Similarity=0.295  Sum_probs=59.8

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCe-eEEEcCCCccCCccc--EEE-------ecceEEEccccceeceEEEEEEecccce
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVALPKNR--VKI-------VGGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~-~~W~~~~~~~~~~~~--~~~-------~~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      .+..|+++.|.|.+   .+.|.|. +.|.+.+........  ...       ..+.|.+.++...+.|.|+|.|.|....
T Consensus        14 ~v~~gE~~~L~V~i---eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          14 FVNAGENLDLIVEY---EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             EEECCCCEEEEEEE---EeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            68899999999999   7999997 999985442221111  111       1246999999999999999999999998


Q ss_pred             eeeeeEEEEe
Q psy535          233 IVQAAQLVVE  242 (460)
Q Consensus       233 ~~~~~~l~v~  242 (460)
                      .+.++.|.|.
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            8888877664

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.30  E-value=1.6e-06  Score=61.17  Aligned_cols=46  Identities=26%  Similarity=0.456  Sum_probs=38.4

Q ss_pred             cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEE
Q psy535            7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLN   52 (460)
Q Consensus         7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~   52 (460)
                      ...+|+.+..+++|.|.+++.+|+|.|+|.+....+....+.+.|.
T Consensus        46 ~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~   91 (92)
T cd05741          46 AYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLR   91 (92)
T ss_pred             CcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEE
Confidence            4578999999999999999999999999999988766545555554

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.26  E-value=5.4e-06  Score=57.62  Aligned_cols=70  Identities=17%  Similarity=0.236  Sum_probs=49.7

Q ss_pred             ccCCCCeEEEEeeeecc--CCCCCCeeEEEcCCCccCCcc--cEEE--ecceEEEccccceeceEEEEEEeccccee
Q psy535          163 QRKVGESVDMHCEAQEA--EGTQKPTITWQRRDGVALPKN--RVKI--VGGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~--~~~p~~~~~W~~~~~~~~~~~--~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      .+..|....|.|.-..+  ...+.+.+.|+++ +.++...  +...  ....|.|.++..+|+|.|+|.+.+..|..
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd-~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKD-SVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccC-CEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            45678899999973211  2346779999994 5555422  2222  23579999999999999999999986654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.25  E-value=0.00013  Score=64.33  Aligned_cols=205  Identities=15%  Similarity=0.186  Sum_probs=115.2

Q ss_pred             cceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEe
Q psy535            9 ETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK   81 (460)
Q Consensus         9 ~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~   81 (460)
                      .++|.+-..     -.|.|.+++.+++|.|+=++.+....  .....+.|.+..+|.+.+.+.  -+.+|+...-.|.+.
T Consensus       275 ~~~yi~p~~a~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA  352 (566)
T PHA03269        275 KEKYIIPDRKTTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD--PVLLGNPYAAYCKVN  352 (566)
T ss_pred             CceEEeccCCCCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC--ccccCCCceEEEEee
Confidence            355555332     17999999999999998776644322  234556667777887766554  366899999999998


Q ss_pred             cCCCC--CeEEEeeCCeecCccc-cccEEEeecCe------EEEeecCCCC--CeEEEEEEE-cCCCCcce--eeEEEEE
Q psy535           82 ANPTF--QYVTWTKDKRLLEPYQ-TKDIVVMQNGS------LLFTRVNQNH--QGRYTCTPY-NAHGTQGS--SGQMEVL  147 (460)
Q Consensus        82 ~~~~~--~~v~W~~~~~~~~~~~-~~~~~~~~~~~------l~i~~~~~~d--~G~y~C~~~-~~~g~~~~--~~~~~v~  147 (460)
                      .+.++  ..+.|++||.++.... ........+|.      |.+......|  .=..+|.+. ...+....  ++...-.
T Consensus       353 ~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~  432 (566)
T PHA03269        353 KYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPD  432 (566)
T ss_pred             eecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCc
Confidence            86443  4599999998886421 12222233442      3332211111  234699874 43333322  3444445


Q ss_pred             eeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEEcCCCccCCcccEEEec------ceEEEcc---ccc
Q psy535          148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQRRDGVALPKNRVKIVG------GNITIEG---LRR  216 (460)
Q Consensus       148 v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~~~~~~~~~~~~~------~~l~i~~---~~~  216 (460)
                      |..+|.+++.      ...|.   ..|.+   .--|.  ..+.|.-+++. ....+....+      +...|.+   ++.
T Consensus       433 VY~~PtISm~------FedG~---AVCtA---~CVP~~~V~l~WlVgD~p-~~~~~t~itG~C~ehPGLVNLRS~~pLS~  499 (566)
T PHA03269        433 VYPFPNVSIE------IIDGH---IVCLA---KCVPRGVVHFNWWINDIP-IEHENSEILGVCDNNKRFVNLQSSCDTSE  499 (566)
T ss_pred             cccCCeEEEE------EeCCE---EEEec---ccccCCCceEEEEecCCC-CCCccceeeccCCCCCCceeecccccccc
Confidence            6666766553      33333   23554   33333  47999986654 3222222211      1233333   333


Q ss_pred             ee-ceEEEEEEec
Q psy535          217 VD-FGYYECVVSN  228 (460)
Q Consensus       217 ~~-~g~y~C~a~n  228 (460)
                      .| .-.|+|++..
T Consensus       500 ~dgpveYTCrL~G  512 (566)
T PHA03269        500 LDGPITYSCHLDG  512 (566)
T ss_pred             cCCceeEEEEEee
Confidence            32 3589998763

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.25  E-value=0.00016  Score=63.64  Aligned_cols=162  Identities=14%  Similarity=0.158  Sum_probs=96.6

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCC--CeEEEeeCC
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTF--QYVTWTKDK   95 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~   95 (460)
                      .|.|..++.+++|.|+=.+.+..+.. ....+.|..+.+|.+.+.+..  +.+|+...-.|.+..+.++  ..+.|++||
T Consensus       199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg  276 (486)
T PHA03273        199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP--SLKGENYRAVCVVASYFPHSSVKLRWYKNA  276 (486)
T ss_pred             ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            49999999999999987765654432 234444555778887766643  6689999999999886443  459999999


Q ss_pred             eecCccc--cccEEEeecC------eEEEeecCC-CCCeEEEEEEE-cCCCCcce--eeEEEEEeeCCCceeeCCCcccc
Q psy535           96 RLLEPYQ--TKDIVVMQNG------SLLFTRVNQ-NHQGRYTCTPY-NAHGTQGS--SGQMEVLVRKPPAFTIKPEAMYQ  163 (460)
Q Consensus        96 ~~~~~~~--~~~~~~~~~~------~l~i~~~~~-~d~G~y~C~~~-~~~g~~~~--~~~~~v~v~~~p~~~~~~~~~~~  163 (460)
                      .++.+..  ........++      +|.+..... +..=..+|.+. ...+....  ++...-.|..+|.+.+.      
T Consensus       277 ~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~~------  350 (486)
T PHA03273        277 KEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSVT------  350 (486)
T ss_pred             eeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEEE------
Confidence            9987322  1222222222      233333221 22346899874 33332222  23334445666666553      


Q ss_pred             cCCCCeEEEEeeeeccCCCCC--CeeEEEcCCC
Q psy535          164 RKVGESVDMHCEAQEAEGTQK--PTITWQRRDG  194 (460)
Q Consensus       164 ~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~  194 (460)
                      ...|.   ..|.+   .--|.  ..+.|.-++.
T Consensus       351 F~~G~---AVCtA---~CVP~egV~l~W~v~D~  377 (486)
T PHA03273        351 VEDGD---AVCTA---KCVPSTGVFVSWSVNDH  377 (486)
T ss_pred             EeCCE---EEEec---ccccCCCeeEEEEccCC
Confidence            23333   23555   34443  6899987553

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.23  E-value=1e-05  Score=55.07  Aligned_cols=63  Identities=10%  Similarity=0.117  Sum_probs=41.9

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      ++|.|.+.+..++..|+|+|+|..+............+      ..|.|.....+|...|+|+|.+..-
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            68999998865557899999999875321111111111      2466665556778899999987643

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.23  E-value=3.8e-06  Score=59.20  Aligned_cols=49  Identities=29%  Similarity=0.476  Sum_probs=38.9

Q ss_pred             CcccceEEEee----CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe
Q psy535            6 GSLETRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE   54 (460)
Q Consensus         6 ~~~~~r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   54 (460)
                      .+..+|..+..    |++|.|.+++.+|+|.|+|.+.+......+..+.|.|+
T Consensus        47 ~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~   99 (99)
T cd05886          47 PPYRERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTVY   99 (99)
T ss_pred             ccccCcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence            35668888764    36999999999999999999999543335778888873

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.22  E-value=1.9e-05  Score=56.85  Aligned_cols=76  Identities=20%  Similarity=0.340  Sum_probs=48.8

Q ss_pred             eeeEEEEEEEecCCC----------CCeEEEeeC-----Ce-----ec----------CccccccEEEe------ecCeE
Q psy535           71 RLQGVVQCHIKANPT----------FQYVTWTKD-----KR-----LL----------EPYQTKDIVVM------QNGSL  114 (460)
Q Consensus        71 g~~~~l~C~~~~~~~----------~~~v~W~~~-----~~-----~~----------~~~~~~~~~~~------~~~~l  114 (460)
                      |.+++|.|...-.|.          ...|.|++-     |.     .+          ......|..+.      .+.+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            567899999874432          236999873     11     11          11123344443      23579


Q ss_pred             EEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535          115 LFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus       115 ~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      .|.+++.+|+|.|+|++.+....  ....+.|.|
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~--~~~~v~L~V  113 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIED--TQDTVSLDV  113 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcc--cEEEEEEEE
Confidence            99999999999999999876544  344555554

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.20  E-value=7.4e-06  Score=60.52  Aligned_cols=72  Identities=11%  Similarity=0.265  Sum_probs=49.3

Q ss_pred             EcceeeeecceeeEEEEEEEec--CCCCCeEEEeeC--Ceec------C---------ccccccEEEeec-----CeEEE
Q psy535           61 FTPTVQYLPFRLQGVVQCHIKA--NPTFQYVTWTKD--KRLL------E---------PYQTKDIVVMQN-----GSLLF  116 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~~~~--~~~~~~v~W~~~--~~~~------~---------~~~~~~~~~~~~-----~~l~i  116 (460)
                      ..|....+.+|++++|.|.+.+  .+. ..+.|||.  +...      .         .....++....+     ..|.|
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~-~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   81 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFST-TYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTI   81 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccc-cEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEE
Confidence            3566677889999999999876  343 37999993  2110      0         001234443322     35999


Q ss_pred             eecCCCCCeEEEEEEEc
Q psy535          117 TRVNQNHQGRYTCTPYN  133 (460)
Q Consensus       117 ~~~~~~d~G~y~C~~~~  133 (460)
                      .+++.+|+|.|.|.+..
T Consensus        82 ~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          82 QNLEKEDSATYYCAYWE   98 (116)
T ss_pred             EECCHHHCEEEEEEEec
Confidence            99999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.17  E-value=3.5e-05  Score=53.43  Aligned_cols=67  Identities=10%  Similarity=0.194  Sum_probs=46.0

Q ss_pred             cceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCeEEEe---ecCCCCCeEEEEEEEcCC
Q psy535           69 PFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT---RVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        69 ~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G~y~C~~~~~~  135 (460)
                      ..|+..+|.|.+.|. |+...++|+|||..+............++++.+.   .+...+...|.|++....
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            346667999999994 6667899999999875322233333445555443   346678889999998643

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.17  E-value=3.9e-06  Score=59.40  Aligned_cols=46  Identities=22%  Similarity=0.348  Sum_probs=38.7

Q ss_pred             ccceEEEeeC-CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE
Q psy535            8 LETRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV   53 (460)
Q Consensus         8 ~~~r~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   53 (460)
                      ..+|+.+..+ ++|.|.+++.+|+|.|.|.+.+..|......+.|.|
T Consensus        50 f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          50 YKERVNFSQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             ceeeEEecCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence            3468888775 799999999999999999999888776677777766

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.16  E-value=8.8e-06  Score=60.07  Aligned_cols=74  Identities=16%  Similarity=0.180  Sum_probs=50.3

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Cee---c-------CccccccEEEee-----cCeEEEeecCCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRL---L-------EPYQTKDIVVMQ-----NGSLLFTRVNQN  122 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~-------~~~~~~~~~~~~-----~~~l~i~~~~~~  122 (460)
                      ...|....+.+|++++|.|..........+.|+|.  +..   +       ......|+....     ..+|.|.+++.+
T Consensus         3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~   82 (116)
T cd07706           3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE   82 (116)
T ss_pred             EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence            34566777899999999999876423346999983  211   0       011123444331     125999999999


Q ss_pred             CCeEEEEEEEc
Q psy535          123 HQGRYTCTPYN  133 (460)
Q Consensus       123 d~G~y~C~~~~  133 (460)
                      |+|.|.|.+..
T Consensus        83 Dsg~Y~C~~~~   93 (116)
T cd07706          83 DSAKYFCALST   93 (116)
T ss_pred             HCEEEEEEEEC
Confidence            99999999875

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.15  E-value=2.3e-06  Score=57.61  Aligned_cols=72  Identities=29%  Similarity=0.564  Sum_probs=45.4

Q ss_pred             CceeeCCCcccccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCCccC-CcccEEEecceEEEccccceeceEEEEEEec
Q psy535          152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDGVAL-PKNRVKIVGGNITIEGLRRVDFGYYECVVSN  228 (460)
Q Consensus       152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  228 (460)
                      |.+...+...  ...+..++|.|.+   .+.+ .+.+.|+....... .........+.|.|.++...|.|.|+|.|.|
T Consensus         2 P~I~~~~~~~--~~~~~~~~l~C~~---~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    2 PQISVPPPPV--VTSGGSVTLTCSA---EGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             SEEEEESTSE--EETTEEEEEEEEE---SSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CEEEEcCCCc--EeeceeEEEEEEE---ccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            4444444443  2223339999999   5555 88999991111111 1112223456799999999999999999986

...

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.13  E-value=8.3e-06  Score=56.89  Aligned_cols=47  Identities=26%  Similarity=0.415  Sum_probs=37.9

Q ss_pred             cccceEEEe----eCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE
Q psy535            7 SLETRVVIK----KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV   53 (460)
Q Consensus         7 ~~~~r~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   53 (460)
                      .+.+|..+.    .+++|.|.+++.+|+|.|+|.+.+.......++..|.|
T Consensus        45 ~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          45 DYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             hhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            556788884    24699999999999999999998776555577888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.13  E-value=1.9e-05  Score=56.23  Aligned_cols=69  Identities=9%  Similarity=0.115  Sum_probs=46.2

Q ss_pred             eecceeeEEEEEEEecCCCCCeEEEeeCCee-----c------CccccccEEEeec-----CeEEEeecCCCCCeEEEEE
Q psy535           67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRL-----L------EPYQTKDIVVMQN-----GSLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-----~------~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~y~C~  130 (460)
                      .+.+|++++|.|..........+.|+|....     +      ......+.....+     ..|.|.+++.+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            4678999999999865333346999985321     1      0112233433221     2599999999999999999


Q ss_pred             EEcCC
Q psy535          131 PYNAH  135 (460)
Q Consensus       131 ~~~~~  135 (460)
                      +....
T Consensus        83 ~~~~~   87 (98)
T cd05716          83 VGDDG   87 (98)
T ss_pred             cccCC
Confidence            87543

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.13  E-value=4.1e-05  Score=53.74  Aligned_cols=65  Identities=20%  Similarity=0.330  Sum_probs=41.9

Q ss_pred             eeeEEEEEEEecC-CCCCeEEEeeCCeecCc-cccccEEEeecCeEEE---eecCCCCCeEEEEEEEcCC
Q psy535           71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEP-YQTKDIVVMQNGSLLF---TRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~~~~  135 (460)
                      ++.++|.|.+.|. |+...++|+++|..+.. ..........++++.+   ..+...+.+.|+|.+.+..
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            6789999999996 54458999999964322 1122233333444322   2345568899999998654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PHA03271 envelope glycoprotein C; Provisional

Probab=98.08  E-value=0.00057  Score=59.20  Aligned_cols=175  Identities=15%  Similarity=0.238  Sum_probs=99.0

Q ss_pred             CcccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCCCcce-eeeEEEE-ecCCeeEEcceeeeecceeeEEEEE
Q psy535            6 GSLETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIGEPQA-AQAYLNV-EFPAKVTFTPTVQYLPFRLQGVVQC   78 (460)
Q Consensus         6 ~~~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~~l~v-~~~p~~~~~~~~~~~~~g~~~~l~C   78 (460)
                      .+.+++|-+-.+.     +|.|.++...|+|.|.-...+....... +.+.+.+ +-||.+.+.+..  +.+|+...-.|
T Consensus       190 ~~~~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~P--VL~Ge~YkAtC  267 (490)
T PHA03271        190 SPHGNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPP--VLSGENYKASC  267 (490)
T ss_pred             CCCCceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCc--cccCCCceEEE
Confidence            3456677775553     7999999999999776666665554322 2233333 346666665543  56899999999


Q ss_pred             EEecCCCC--CeEEEeeCCeecCccccccEEE--eec-------CeEEEeecCCCCCeEEEEEEE-cCCCCc-ceeeEEE
Q psy535           79 HIKANPTF--QYVTWTKDKRLLEPYQTKDIVV--MQN-------GSLLFTRVNQNHQGRYTCTPY-NAHGTQ-GSSGQME  145 (460)
Q Consensus        79 ~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~--~~~-------~~l~i~~~~~~d~G~y~C~~~-~~~g~~-~~~~~~~  145 (460)
                      .+..+.++  ..+.|++||.++.+........  .++       ++|.+.+...+..=..+|.+. ...... ..++...
T Consensus       268 ~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaat  347 (490)
T PHA03271        268 IVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAI  347 (490)
T ss_pred             EeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccC
Confidence            99886443  4599999999886533222221  111       123333332223346899875 322111 1233333


Q ss_pred             EEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCC
Q psy535          146 VLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDG  194 (460)
Q Consensus       146 v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~  194 (460)
                      -.|..+|.+.+.      ...|..   .|.+   .--| ...+.|.-+++
T Consensus       348 P~VY~~P~ISv~------FedG~A---VCtA---~CVP~gV~lrWlVgD~  385 (490)
T PHA03271        348 PTVYHHPRISLA------FKDGYA---ICTI---ECVPSGITVRWLVHDE  385 (490)
T ss_pred             CccccCCeEEEE------EeCCEE---EEec---cccCCCcEEEEEecCC
Confidence            345556665543      333332   3443   2222 34899987554

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.06  E-value=5.1e-05  Score=54.88  Aligned_cols=78  Identities=26%  Similarity=0.439  Sum_probs=53.3

Q ss_pred             CCCeEEEEeeeeccCCC---------CCCeeEEEcCCCc--c--C------------CcccEEE-------ecceEEEcc
Q psy535          166 VGESVDMHCEAQEAEGT---------QKPTITWQRRDGV--A--L------------PKNRVKI-------VGGNITIEG  213 (460)
Q Consensus       166 ~g~~~~l~C~~~~~~~~---------p~~~~~W~~~~~~--~--~------------~~~~~~~-------~~~~l~i~~  213 (460)
                      .|++++|.|.+......         ..+.+.|++....  .  +            -..|+.+       .+.+|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            38899999998521111         1468999974210  0  0            0124443       234799999


Q ss_pred             ccceeceEEEEEEecccceeeeeeEEEEec
Q psy535          214 LRRVDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       214 ~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      ++..|+|.|+|.+.+........+.|.|.+
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999998777777777777764

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.05  E-value=5.2e-05  Score=54.91  Aligned_cols=78  Identities=22%  Similarity=0.425  Sum_probs=53.5

Q ss_pred             CCCeEEEEeeeeccC---CCCCCeeEEEcCCCcc-------C---------C--cccEEEe-----cceEEEccccceec
Q psy535          166 VGESVDMHCEAQEAE---GTQKPTITWQRRDGVA-------L---------P--KNRVKIV-----GGNITIEGLRRVDF  219 (460)
Q Consensus       166 ~g~~~~l~C~~~~~~---~~p~~~~~W~~~~~~~-------~---------~--~~~~~~~-----~~~l~i~~~~~~~~  219 (460)
                      .|++++|.|.+....   +.....+.|++.....       +         .  ..++...     ..+|.|.+++..|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            488999999873110   1234579999853210       0         0  1233322     23699999999999


Q ss_pred             eEEEEEEecccceeeeeeEEEEec
Q psy535          220 GYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       220 g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      |.|.|.+.+..+.....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999888888888887764

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.03  E-value=6e-05  Score=54.42  Aligned_cols=70  Identities=16%  Similarity=0.128  Sum_probs=43.3

Q ss_pred             eeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeec-Ce------EEEeecCCCCCe-EEEEEEEcCCC
Q psy535           66 QYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQN-GS------LLFTRVNQNHQG-RYTCTPYNAHG  136 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~------l~i~~~~~~d~G-~y~C~~~~~~g  136 (460)
                      ..+..|+.++|.|.+.+. |+...++|+|||..+.... .......+ ++      |.+. ....|.| .|+|.+.+...
T Consensus        16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~-~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQ-PNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccc-cceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCCC
Confidence            334567789999999986 4446899999999975321 12211122 23      4334 3344444 59999987643


Q ss_pred             C
Q psy535          137 T  137 (460)
Q Consensus       137 ~  137 (460)
                      .
T Consensus        94 ~   94 (111)
T cd05772          94 Q   94 (111)
T ss_pred             C
Confidence            3

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.03  E-value=1.8e-05  Score=56.45  Aligned_cols=47  Identities=30%  Similarity=0.411  Sum_probs=36.0

Q ss_pred             cccceEEEee-----CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE
Q psy535            7 SLETRVVIKK-----DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV   53 (460)
Q Consensus         7 ~~~~r~~~~~-----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   53 (460)
                      +..+|.++..     +++|.|.+++.+|+|.|.|.+.+..+......+.|.|
T Consensus        48 ~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          48 AYEGRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             CccCcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            3447777764     3599999999999999999999854433477777776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.02  E-value=2.2e-05  Score=55.93  Aligned_cols=67  Identities=13%  Similarity=0.240  Sum_probs=44.0

Q ss_pred             eecceeeEEEEEEEecCC-CCCeEEEeeCCe--ecC----------ccccccEEEeec---CeEEEeecCCCCCeEEEEE
Q psy535           67 YLPFRLQGVVQCHIKANP-TFQYVTWTKDKR--LLE----------PYQTKDIVVMQN---GSLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~~--~~~----------~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~  130 (460)
                      .+.+|++++|.|.+.+.. ....+.||+...  ...          .....++....+   ..|.|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            367899999999987641 223599998321  110          001223333222   2599999999999999999


Q ss_pred             EEc
Q psy535          131 PYN  133 (460)
Q Consensus       131 ~~~  133 (460)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>KOG4367|consensus

Probab=98.01  E-value=6.8e-06  Score=70.68  Aligned_cols=91  Identities=22%  Similarity=0.308  Sum_probs=68.5

Q ss_pred             CCCCCCCcceEEEee--cceEEEEecCCCCCCccceEEEEEEEEcC--CeeeeccccCCCCcccccccceecCceeeeee
Q psy535          340 GPKPGPPRNVSVTEV--NNGFVISWQPPLERASLIQYYLIKYRTDG--SWKTLNKGQIRPEENSYLGEYREQGNKDWLPI  415 (460)
Q Consensus       340 ~~~P~~p~~~~~~~~--~~~v~l~W~~~~~~~~~i~~y~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (460)
                      .++|+.|..-.-..-  .++++|.|..|...+.+..||.++....+  .|...-.                         
T Consensus       435 s~vpatpilq~~ec~t~nns~t~~wkqp~~~~~~~dg~~leld~g~~g~frevy~-------------------------  489 (699)
T KOG4367|consen  435 SPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYV-------------------------  489 (699)
T ss_pred             CCCCCCceeehhhhhccCCceEEEeecCCCCCCCCcceEEEeecCCCCceeEEEe-------------------------
Confidence            345655543332222  35999999987776889999999987632  2332222                         


Q ss_pred             ccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          416 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       416 ~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                          ..++..+|.||--++.|..||.|+|+.|.|++|+.+...|
T Consensus       490 ----g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl~lqt  529 (699)
T KOG4367|consen  490 ----GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQT  529 (699)
T ss_pred             ----cCceeEEecceecchhHHHHHHHhhccCCCcccceeEeee
Confidence                4568899999999999999999999999999999887766

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.00  E-value=1.8e-05  Score=56.18  Aligned_cols=69  Identities=20%  Similarity=0.282  Sum_probs=43.6

Q ss_pred             eecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccc-cccEEEeecCeEE------EeecCCCCCeEEEEEEEcCC
Q psy535           67 YLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQ-TKDIVVMQNGSLL------FTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~l~------i~~~~~~d~G~y~C~~~~~~  135 (460)
                      ....++.++|.|.+.|. |....|+|++||..+.... ........++++.      +......+...|+|++....
T Consensus        13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            34456779999999985 5466899999999875321 1122222244433      33333345688999998754

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=97.98  E-value=8.6e-05  Score=53.10  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=28.9

Q ss_pred             ceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       207 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      .+|.|.+++..|+|.|+|.+.+..+.....+.|.|
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          65 VALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            36999999999999999999987776666666654

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.97  E-value=0.00012  Score=50.98  Aligned_cols=63  Identities=17%  Similarity=0.341  Sum_probs=46.3

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc--------CCcccEEEec--c---eEEEccccceeceEEEEEEec
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA--------LPKNRVKIVG--G---NITIEGLRRVDFGYYECVVSN  228 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~~--~---~l~i~~~~~~~~g~y~C~a~n  228 (460)
                      .+..|++++|.|.+   .+.....+.|++.+...        ....|+....  +   +|.|.+++.+|.|.|.|.+..
T Consensus         8 tv~~G~ta~L~C~v---~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           8 TVVEGEVAIISCRV---KNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             EEcCCCcEEEEEEE---ccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            67899999999999   55555677887655322        2344554332  2   589999999999999999874

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.97  E-value=9.4e-05  Score=53.56  Aligned_cols=78  Identities=26%  Similarity=0.505  Sum_probs=52.4

Q ss_pred             CCCeEEEEeeeeccC---CCCCCeeEEEcCC--Cc-c--C---Ccc----------cEEE-----ecceEEEccccceec
Q psy535          166 VGESVDMHCEAQEAE---GTQKPTITWQRRD--GV-A--L---PKN----------RVKI-----VGGNITIEGLRRVDF  219 (460)
Q Consensus       166 ~g~~~~l~C~~~~~~---~~p~~~~~W~~~~--~~-~--~---~~~----------~~~~-----~~~~l~i~~~~~~~~  219 (460)
                      .|++++|.|.+....   ......+.|++..  .. .  +   ...          ++..     ...+|.|.+++..|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            388999999984211   1235699999852  10 0  0   010          1111     134799999999999


Q ss_pred             eEEEEEEecccceeeeeeEEEEec
Q psy535          220 GYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       220 g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      |.|.|.+.+..+.....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999998877777777777753

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>KOG4258|consensus

Probab=97.95  E-value=0.00013  Score=69.08  Aligned_cols=126  Identities=21%  Similarity=0.377  Sum_probs=90.7

Q ss_pred             eecceEEEEeecCCCCCCCceeeEEEEEEecC--------------CCCeeeeeccCC-------CCceEEEccCccCcc
Q psy535          256 ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG--------------NKDWLPIPVTPP-------GSTQITINRLTPATT  314 (460)
Q Consensus       256 ~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~i~~l~~~~~  314 (460)
                      ...+++.++|..-......-..+|.+.|+..-              ...|....+..+       ......+.+|+|.+.
T Consensus       499 ~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~LkP~Tq  578 (1025)
T KOG4258|consen  499 TSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLKPWTQ  578 (1025)
T ss_pred             eecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCCccce
Confidence            34568999998543332222357888887642              234555544332       122577889999999


Q ss_pred             EEEEEEEEcC--CCCC--CCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEE
Q psy535          315 YEFQVVGKNE--LGDG--MLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRT  381 (460)
Q Consensus       315 ~~~~~~a~n~--~G~~--~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~  381 (460)
                      |.|.+.+...  .+..  ..|...-++|....|.||..+-....+ +.|.|+|.+|..+++.++.|.|.|..
T Consensus       579 YAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~wer  650 (1025)
T KOG4258|consen  579 YAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVVWER  650 (1025)
T ss_pred             eEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCCceeEEEEEEEe
Confidence            9999988622  2221  357778899999999999887776666 48999999999999999999999976

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.93  E-value=0.00014  Score=50.68  Aligned_cols=66  Identities=15%  Similarity=0.170  Sum_probs=41.3

Q ss_pred             ceeeEEEEEEEecC-CCCCeEEEeeCCeecCcc-ccccEEEeecCeEEEe---ecCCCCCeEEEEEEEcCC
Q psy535           70 FRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPY-QTKDIVVMQNGSLLFT---RVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        70 ~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~l~i~---~~~~~d~G~y~C~~~~~~  135 (460)
                      .++..+|.|.+.|. |....++|.+||..+... .........++++.+.   .+...+...|+|.+....
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCC
Confidence            35567999999995 666789999999987531 1112222333432221   233456779999998653

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.92  E-value=0.00019  Score=50.25  Aligned_cols=67  Identities=13%  Similarity=0.219  Sum_probs=43.4

Q ss_pred             ceeeEEEEEEEecC-CCCCeEEEeeCCeecCcc-ccccEEEeecCeEEEe---ecCCCCCeEEEEEEEcCCC
Q psy535           70 FRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPY-QTKDIVVMQNGSLLFT---RVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        70 ~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~l~i~---~~~~~d~G~y~C~~~~~~g  136 (460)
                      .|+.++|.|.+.|. |+...++|++||..+... .........++++.+.   .+...+...|+|.+.....
T Consensus        13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l   84 (94)
T cd05766          13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSL   84 (94)
T ss_pred             CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence            57789999999995 555579999999987542 1122222333333321   2344567789999987543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=97.91  E-value=8.7e-05  Score=50.77  Aligned_cols=62  Identities=18%  Similarity=0.262  Sum_probs=41.0

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE----------ecceEEEccccceeceEEEEEEecccceee
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI----------VGGNITIEGLRRVDFGYYECVVSNEVATIV  234 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  234 (460)
                      +.|.|.+.  .+.|.+.+.|+++ +..+.......          ..+.|.+......+.+.|+|.|.|......
T Consensus         2 ~~L~C~v~--g~~P~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~   73 (82)
T cd05759           2 YNLTCRAR--GAKPAAEIIWFRD-GEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTG   73 (82)
T ss_pred             EEEEEEEe--CccCCCEEEEEEC-CEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCC
Confidence            68999993  3478889999994 44443322111          112466666666778899999998765443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.89  E-value=4.7e-05  Score=53.19  Aligned_cols=45  Identities=22%  Similarity=0.267  Sum_probs=34.2

Q ss_pred             CcccceEEEee----CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeE
Q psy535            6 GSLETRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAY   50 (460)
Q Consensus         6 ~~~~~r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~   50 (460)
                      .+..+|+.+..    +++|.|.+++.+|+|.|+|.+.........+.++
T Consensus        44 ~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~   92 (96)
T cd05889          44 DKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIE   92 (96)
T ss_pred             ccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEE
Confidence            35668888864    4799999999999999999998765443344443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.88  E-value=0.00012  Score=51.33  Aligned_cols=70  Identities=14%  Similarity=0.241  Sum_probs=47.0

Q ss_pred             CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc----ccEEEecceEEEccccceeceEEEEEEe
Q psy535          152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK----NRVKIVGGNITIEGLRRVDFGYYECVVS  227 (460)
Q Consensus       152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~~~g~y~C~a~  227 (460)
                      |.+...|..  .+..|++++|.|...    .....+.|++++......    .........+.|..++..|+|.|+|...
T Consensus         2 P~l~a~p~~--vV~~G~~VTL~C~~~----~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           2 PFLSAHPSP--VVPSGENVTLQCHSD----IRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CEEEecCCC--ccCCCCeEEEEEecC----CCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            444444544  578999999999862    245589999965432110    0001123478999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.87  E-value=4.9e-05  Score=54.21  Aligned_cols=47  Identities=30%  Similarity=0.409  Sum_probs=34.9

Q ss_pred             cccceEEEee----CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE
Q psy535            7 SLETRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV   53 (460)
Q Consensus         7 ~~~~r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   53 (460)
                      ...+|..+..    +.+|.|.+++.+|+|.|.|.+...........+.|.|
T Consensus        47 ~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          47 SYEGRVSFLNSSLEDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             CcCceEEEeCCCCCceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence            3467777764    4599999999999999999998643333366666665

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>TIGR00864 PCC polycystin cation channel protein

Probab=97.86  E-value=0.076  Score=58.58  Aligned_cols=186  Identities=18%  Similarity=0.212  Sum_probs=91.6

Q ss_pred             CCCeeEEEEEE--eCCCCcceeeeEEEEecCCe---eEEcceee-eecceeeEEEEEEEecCCCCCeEEEeeCCeecCcc
Q psy535           28 DDSGLYMCEVS--NGIGEPQAAQAYLNVEFPAK---VTFTPTVQ-YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPY  101 (460)
Q Consensus        28 ~d~G~Y~C~~~--~~~~~~~~~~~~l~v~~~p~---~~~~~~~~-~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~  101 (460)
                      ...|.|+-...  |..+.. .....+.|..|..   +....... .+..+..+.+.=...+.  +..+.|..++......
T Consensus      1397 ~~pGtYTVTLTVtN~~gs~-T~s~~I~V~~Pv~~~~ft~ngT~g~~ltlg~pv~Ftd~StGt--~~Sy~WdFGDGstst~ 1473 (2740)
T TIGR00864      1397 NDPGCYLVTVAASNNISAA-NDSALIEVLEPVGATSFKHNGSHGNNLELGQPYLFSAFGRAR--NASYLWDFGDGGLLEG 1473 (2740)
T ss_pred             CCCceEEEEEEEECCCcce-eeeeEEEEecCCCcceeeecCCcccccccCcceEEeecCCCC--ceEEEEECCCCCccCc
Confidence            35688876554  444432 4555667765422   21111111 12223333333222332  3468888755432110


Q ss_pred             ccccEEEeecCeEEEeecCCCCCeEEEE--EEEcCCCCcceeeEEEEEeeCCCc-eeeCCCcccccCCCCeEEEEeeeec
Q psy535          102 QTKDIVVMQNGSLLFTRVNQNHQGRYTC--TPYNAHGTQGSSGQMEVLVRKPPA-FTIKPEAMYQRKVGESVDMHCEAQE  178 (460)
Q Consensus       102 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C--~~~~~~g~~~~~~~~~v~v~~~p~-~~~~~~~~~~~~~g~~~~l~C~~~~  178 (460)
                              .+     ........|.|+-  .+.|..|.....  +.|.|..|.. +.+.+... .+..+..+.+.-... 
T Consensus      1474 --------qn-----ptHtY~~~GtYtVtLTvtN~~Gsst~T--~~VtV~~pV~~~tinas~~-~vpl~~sV~Fta~~s- 1536 (2740)
T TIGR00864      1474 --------PE-----ILHAFNSPGDFNIRLAAANEVGKNEAT--LNVAVKARVRGLTINASLT-NVPLNGSVHFEAHLD- 1536 (2740)
T ss_pred             --------cc-----eEEEcCCCceEEEEEEEECCCCceEEE--EEEEEeccccceEEcCCCc-cccccceEEEEEEcc-
Confidence                    01     1123456899976  567877775444  4455544432 33333333 344566677764431 


Q ss_pred             cCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEE--EEEecccceeeeeeEEEEec
Q psy535          179 AEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYE--CVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       179 ~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~--C~a~n~~g~~~~~~~l~v~~  243 (460)
                       .|. ...+.|...++......     +.+. +.  .....|.|+  ..+.|..|....+..+.|..
T Consensus      1537 -~Gs-~v~ysWdFGDg~ts~~~-----npt~-~y--TY~spGtYtVtLTvtN~~Gs~~~T~~i~V~~ 1593 (2740)
T TIGR00864      1537 -AGD-DVRFSWILCDHCTPIFG-----GNTI-FY--TFRSVGTFNIIVTAENDVGAAQASIFLFVLQ 1593 (2740)
T ss_pred             -CCC-ceeEEEEeCCCCccccC-----CCce-EE--eecCCceEEEEEEEecCCCccceeEEEEEee
Confidence             343 45899998665322111     1110 11  112346665  56779999887777777664

Note: this model has been restricted to the amino half because for technical reasons.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.85  E-value=4.9e-05  Score=53.29  Aligned_cols=75  Identities=17%  Similarity=0.199  Sum_probs=44.8

Q ss_pred             cceeeeecceeeEEEEEEEecC--CCCCeEEEeeCCeecCccccccEEEeecCeEEEee---cCC---CCCeEEEEEEEc
Q psy535           62 TPTVQYLPFRLQGVVQCHIKAN--PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR---VNQ---NHQGRYTCTPYN  133 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~---~d~G~y~C~~~~  133 (460)
                      .|....+..++.++|.|.+.|.  |+...|+|+|++...............++++.+..   +..   .+...|+|.+..
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H   84 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH   84 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence            3433445568889999999998  66677999998743321111122223444444432   222   245679999987


Q ss_pred             CCC
Q psy535          134 AHG  136 (460)
Q Consensus       134 ~~g  136 (460)
                      ...
T Consensus        85 ~~l   87 (96)
T cd07696          85 PDL   87 (96)
T ss_pred             CCC
Confidence            543

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.85  E-value=9.7e-05  Score=51.50  Aligned_cols=66  Identities=17%  Similarity=0.203  Sum_probs=41.9

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      |+.+.|.|.+.+..+++.|+|+.++..+............+      +.|.+......+...++|.|.+...
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence            67999999887665556899999988772111111111111      2466665555677889999988654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.84  E-value=5.9e-05  Score=54.61  Aligned_cols=66  Identities=15%  Similarity=0.297  Sum_probs=43.1

Q ss_pred             eecceeeEEEEEEEecCCCCCeEEEeeCCee---c--------Cc---------cccccEEE--eec---CeEEEeecCC
Q psy535           67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRL---L--------EP---------YQTKDIVV--MQN---GSLLFTRVNQ  121 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~---~--------~~---------~~~~~~~~--~~~---~~l~i~~~~~  121 (460)
                      .+.+|++++|.|.+.+......+.||+-...   .        ..         ....+...  ..+   ..|.|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            4678999999999876433346999983211   0        00         00123322  111   2499999999


Q ss_pred             CCCeEEEEEEE
Q psy535          122 NHQGRYTCTPY  132 (460)
Q Consensus       122 ~d~G~y~C~~~  132 (460)
                      +|+|.|.|...
T Consensus        82 ~Dsg~YyCa~~   92 (107)
T cd07700          82 EDSGTYFCMTV   92 (107)
T ss_pred             HHCEEEEEeEc
Confidence            99999999975

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>KOG0613|consensus

Probab=97.84  E-value=0.00027  Score=70.35  Aligned_cols=162  Identities=12%  Similarity=0.018  Sum_probs=96.3

Q ss_pred             eecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535           67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV  146 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v  146 (460)
                      ....++...+.|.+.+...+ ...|+.+.......      .....++.|.+....+.+.|+|...+..+.........+
T Consensus       240 ~t~e~s~~~i~~~l~~~~G~-~~~~~~~~l~e~~~------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~  312 (1205)
T KOG0613|consen  240 VTLEASDRKIQLTLRAPRGP-YSAHILGYLIEQRK------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEA  312 (1205)
T ss_pred             cccchhheeeeEEeecCCCc-hHHHHhcchhhhcc------cCCCccccccccCCccccceeeecccCCcccceeeeEEe
Confidence            34456666778887776554 56776655443321      122335677777778888899988877776654444333


Q ss_pred             Eee--------------CCCceeeCCC--cccccCCCCeEEEEeeeeccCCCCCCe-eEEEcCCCccCCcc------cEE
Q psy535          147 LVR--------------KPPAFTIKPE--AMYQRKVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVALPKN------RVK  203 (460)
Q Consensus       147 ~v~--------------~~p~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~p~~~-~~W~~~~~~~~~~~------~~~  203 (460)
                      .+.              .++...+...  .......+..+++.|..   .+.+.+. +.|+++........      ...
T Consensus       313 ~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  389 (1205)
T KOG0613|consen  313 PIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL---SGTQKPDEAQGYHGEEVSSESLGALPCPVGT  389 (1205)
T ss_pred             eccccccCchhhhhhccCCccccccccccceeccccCcceeecccc---cCCcCCchheeeccccccccccccccccccc
Confidence            322              1111111110  11135567789999998   6777775 99998443222111      111


Q ss_pred             EecceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535          204 IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ  238 (460)
Q Consensus       204 ~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~  238 (460)
                      .....+.+..+...+.+.+.|.+.|..|.......
T Consensus       390 ~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~  424 (1205)
T KOG0613|consen  390 VTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAE  424 (1205)
T ss_pred             ccCcchhhhhcCcccccccccceeccCCcccccch
Confidence            12335777888888999999999999887654443

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.84  E-value=0.0002  Score=51.96  Aligned_cols=78  Identities=26%  Similarity=0.455  Sum_probs=51.7

Q ss_pred             CCCeEEEEeeeeccCC-------CCCCeeEEEcCCC-ccC---------------CcccEEE-------ecceEEEcccc
Q psy535          166 VGESVDMHCEAQEAEG-------TQKPTITWQRRDG-VAL---------------PKNRVKI-------VGGNITIEGLR  215 (460)
Q Consensus       166 ~g~~~~l~C~~~~~~~-------~p~~~~~W~~~~~-~~~---------------~~~~~~~-------~~~~l~i~~~~  215 (460)
                      .|++++|.|.+.....       .....+.|++... ...               -..|+..       ...+|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            3889999999842111       1136799998521 110               0123333       12469999999


Q ss_pred             ceeceEEEEEEecccceeeeeeEEEEec
Q psy535          216 RVDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       216 ~~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      ..|+|.|.|.+..........+.|.|.+
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999988766677777777654

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.84  E-value=0.00031  Score=47.02  Aligned_cols=76  Identities=12%  Similarity=0.208  Sum_probs=51.4

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      .+..|++++|+|.... ...|.+.++|...++....  .......+|.+..+...|+|.++|.+....-.......+.|
T Consensus        10 ~lL~G~sLtLtl~~~s-~s~p~~~i~w~~P~n~~~~--~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V   85 (88)
T cd07694          10 HVLSGTNLTLTLHGSS-NSLPAFKVEWRGPGNKSKQ--ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV   85 (88)
T ss_pred             eeecCCcEEEEEecCC-CCCCCccEEEeCCCCccce--eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence            5788999999999831 1234559999975554321  11123457999999999999999999755444444444444

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.82  E-value=0.00014  Score=53.00  Aligned_cols=65  Identities=20%  Similarity=0.311  Sum_probs=47.5

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCc--c------------CCcccEEEe------cceEEEccccceeceEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV--A------------LPKNRVKIV------GGNITIEGLRRVDFGYY  222 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~--~------------~~~~~~~~~------~~~l~i~~~~~~~~g~y  222 (460)
                      .+..|++++|.|.+   .+.+...+.|++....  .            ....++.+.      ...|.|.+++.+|+|.|
T Consensus         9 ~~~~G~~v~L~C~~---~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y   85 (109)
T cd04983           9 SVQEGENVTLNCNY---STSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY   85 (109)
T ss_pred             EEcCCCCEEEEEEE---CCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence            68899999999998   4557789999974321  0            112334332      23699999999999999


Q ss_pred             EEEEeccc
Q psy535          223 ECVVSNEV  230 (460)
Q Consensus       223 ~C~a~n~~  230 (460)
                      .|.+.+..
T Consensus        86 ~C~~~~~~   93 (109)
T cd04983          86 FCALSESG   93 (109)
T ss_pred             EEEEecCC
Confidence            99998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=97.82  E-value=4.6e-05  Score=55.57  Aligned_cols=36  Identities=25%  Similarity=0.541  Sum_probs=30.0

Q ss_pred             cccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCC
Q psy535            7 SLETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIG   42 (460)
Q Consensus         7 ~~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~   42 (460)
                      ...+|+.+..+     .+|.|.+++.+|+|.|+|.+.|..+
T Consensus        64 ~f~~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          64 PFKERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             CccCceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCC
Confidence            44578887543     5999999999999999999998765

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd00096 Ig Immunoglobulin domain

Probab=97.81  E-value=7.6e-05  Score=49.34  Aligned_cols=61  Identities=21%  Similarity=0.366  Sum_probs=43.2

Q ss_pred             EEEEEEEecCCCCCeEEEeeCCeecCcccc-----ccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           74 GVVQCHIKANPTFQYVTWTKDKRLLEPYQT-----KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      +.|.|.+.+ ++...+.|++++........     ..........|.|.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASG-PPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecC-CCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            468999988 44457999998876543211     11122233469999999999999999998755

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.81  E-value=0.00017  Score=50.39  Aligned_cols=73  Identities=8%  Similarity=0.035  Sum_probs=45.0

Q ss_pred             eeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           72 LQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        72 ~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      ....+.|.+.+..+++.|+|+++.....   ........+      +.|.+.....+|...|+|++.+..-.......++
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~---~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~   92 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGGEA---ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVT   92 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCCcc---eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence            3467899997665566899999721110   011111122      2477766666777889999998766555555555


Q ss_pred             EE
Q psy535          146 VL  147 (460)
Q Consensus       146 v~  147 (460)
                      |.
T Consensus        93 L~   94 (95)
T cd05719          93 LN   94 (95)
T ss_pred             ee
Confidence            53

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.80  E-value=0.00014  Score=48.61  Aligned_cols=62  Identities=19%  Similarity=0.330  Sum_probs=39.7

Q ss_pred             EEEEEEEecC-CCCCeEEEeeCCeecCcc-ccccEEEeecCe------EEEeecCCCCCeEEEEEEEcCC
Q psy535           74 GVVQCHIKAN-PTFQYVTWTKDKRLLEPY-QTKDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        74 ~~l~C~~~~~-~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      ++|.|.+.+. |+...++|+|+|.++... .........+++      |.|......+...|+|++.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6899999996 444689999999874321 111112223333      5554445577789999997643

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.80  E-value=0.00017  Score=53.31  Aligned_cols=73  Identities=15%  Similarity=0.168  Sum_probs=47.6

Q ss_pred             cceeeeecceeeEEEEEEEecCC-----CCCeEEEeeCCe-----e-cC---------ccccccEEEee-----cCeEEE
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANP-----TFQYVTWTKDKR-----L-LE---------PYQTKDIVVMQ-----NGSLLF  116 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~-----~~~~v~W~~~~~-----~-~~---------~~~~~~~~~~~-----~~~l~i  116 (460)
                      .|....+.+|++|+|.|......     ....+.|++...     . +.         .....|+....     +..|.|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            45667788999999999875322     123599998421     1 10         01112333321     125999


Q ss_pred             eecCCCCCeEEEEEEEcC
Q psy535          117 TRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus       117 ~~~~~~d~G~y~C~~~~~  134 (460)
                      .+++.+|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999998653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.80  E-value=0.00011  Score=54.07  Aligned_cols=72  Identities=13%  Similarity=0.182  Sum_probs=47.0

Q ss_pred             cceeeeecceeeEEEEEEEecCC-CCCeEEEeeC---Cee--c---C---------ccccccEEEeec---C--eEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD---KRL--L---E---------PYQTKDIVVMQN---G--SLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~---~~~--~---~---------~~~~~~~~~~~~---~--~l~i~~  118 (460)
                      .|....+.+|++++|.|...+.. ....+.|||-   +.+  +   .         .....++....+   .  .|.|.+
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            45667788999999999876432 1236999982   222  1   0         001123333211   1  599999


Q ss_pred             cCCCCCeEEEEEEEc
Q psy535          119 VNQNHQGRYTCTPYN  133 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~  133 (460)
                      ++.+|+|.|.|.+..
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            999999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=97.80  E-value=0.00063  Score=47.52  Aligned_cols=74  Identities=41%  Similarity=0.646  Sum_probs=55.0

Q ss_pred             cceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCC
Q psy535          258 EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN  332 (460)
Q Consensus       258 ~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~  332 (460)
                      ..++.+.|.++...... ...|.++++......|..+.........+.+.+|.++..|.+++.|.+..|.+..+.
T Consensus        14 ~~~~~v~W~~~~~~~~~-~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~~s~   87 (93)
T cd00063          14 STSVTLSWTPPEDDGGP-ITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSE   87 (93)
T ss_pred             CCEEEEEECCCCCCCCc-ceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCccCCCcc
Confidence            57999999976443222 368888888765556665554323567899999999999999999999887776554

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>TIGR00864 PCC polycystin cation channel protein

Probab=97.79  E-value=0.099  Score=57.75  Aligned_cols=276  Identities=14%  Similarity=0.127  Sum_probs=133.7

Q ss_pred             CCCeeEEEE--EEeCCCCcceeeeEEEEecCC-eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccc
Q psy535           28 DDSGLYMCE--VSNGIGEPQAAQAYLNVEFPA-KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTK  104 (460)
Q Consensus        28 ~d~G~Y~C~--~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~  104 (460)
                      ...|.|+-.  |.|..|.. .....+.|..|. .+.+.+....+..+.++.|.-...... +..+.|..++.........
T Consensus      1481 ~~~GtYtVtLTvtN~~Gss-t~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs-~v~ysWdFGDg~ts~~~np 1558 (2740)
T TIGR00864      1481 NSPGDFNIRLAAANEVGKN-EATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAGD-DVRFSWILCDHCTPIFGGN 1558 (2740)
T ss_pred             CCCceEEEEEEEECCCCce-EEEEEEEEeccccceEEcCCCccccccceEEEEEEccCCC-ceeEEEEeCCCCccccCCC
Confidence            347888665  45666764 566677776543 355556656666777787774433333 3379998865422110111


Q ss_pred             cEEEeecCeEEEeecCCCCCeEEEE--EEEcCCCCcceeeEEEEEeeCCCce-eeCCC------------cccccCCCCe
Q psy535          105 DIVVMQNGSLLFTRVNQNHQGRYTC--TPYNAHGTQGSSGQMEVLVRKPPAF-TIKPE------------AMYQRKVGES  169 (460)
Q Consensus       105 ~~~~~~~~~l~i~~~~~~d~G~y~C--~~~~~~g~~~~~~~~~v~v~~~p~~-~~~~~------------~~~~~~~g~~  169 (460)
                              +.   .-.....|.|+-  .+.|..|....+..+.|  +.+... .+...            ....+..+..
T Consensus      1559 --------t~---~yTY~spGtYtVtLTvtN~~Gs~~~T~~i~V--~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~ 1625 (2740)
T TIGR00864      1559 --------TI---FYTFRSVGTFNIIVTAENDVGAAQASIFLFV--LQEIEGLQILGETAEGGGGGVQELDGCYFETNHT 1625 (2740)
T ss_pred             --------ce---EEeecCCceEEEEEEEecCCCccceeEEEEE--eecccceEEEeecccccCCcccccccceeccCCE
Confidence                    10   112345788875  56788888755554444  433211 11100            0012344555


Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEE--EEEEecccceeeeeeEEEEecCCCC
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYY--ECVVSNEVATIVQAAQLVVEGTQPH  247 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y--~C~a~n~~g~~~~~~~l~v~~~~p~  247 (460)
                      +.|.-...  .| ....+.|...++...........+....+.   ..+.|.|  +..+.|..|....+..+.+..+...
T Consensus      1626 v~l~~~~~--~G-TnvsysW~~~~~n~~dg~~~~~tGk~~~vt---~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~ 1699 (2740)
T TIGR00864      1626 VQFHAGFK--DG-TNLSFSWNAILDNEPDGPAFAGSGKGAKLN---PLEAGPCDIFLQAANLLGQATADCTIDFLEPAGN 1699 (2740)
T ss_pred             EEeeeccC--CC-CeeEEEEEEecCCCCCCccccccCceeEEe---cCCCceEEEEEEEeecccceeeEEEEEEEEEcCc
Confidence            66655542  33 345777865211100011111112222222   2334554  5677899999888877777653221


Q ss_pred             CCCcee--eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCC
Q psy535          248 APYNIT--GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL  325 (460)
Q Consensus       248 ~p~~~~--~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~  325 (460)
                      .-....  .......+.++-.  ...+..  ..|.+.+.++.  .|...     ..  ...........|.+.+.|.|..
T Consensus      1700 L~L~aS~~~aavn~~V~fs~~--lt~GS~--vty~W~~gdG~--s~~~s-----~p--~~tHtf~~~G~y~VtVta~N~v 1766 (2740)
T TIGR00864      1700 LMLQASDNPAAVNALINLSAE--LAEGSG--LQYRWFLEEGD--DLETS-----EP--FMSHSFPSAGLHLVTMKAFNEL 1766 (2740)
T ss_pred             eEEeccCCcccCCCeEEEEEE--ecCCCC--cEEEEEECCCC--CcccC-----CC--ceEEEccCCceEEEEEEEEccc
Confidence            110001  1112233444322  223333  23433333321  11110     11  1112244456678899999999


Q ss_pred             CCCCCCCcEEEE
Q psy535          326 GDGMLSNIVVVK  337 (460)
Q Consensus       326 G~~~~s~~~~~~  337 (460)
                      |....+..+.+.
T Consensus      1767 ss~~~s~~V~Vq 1778 (2740)
T TIGR00864      1767 GSANASEEVDVQ 1778 (2740)
T ss_pred             cccceeEEEEEE
Confidence            977665555554

Note: this model has been restricted to the amino half because for technical reasons.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.78  E-value=7.5e-05  Score=52.95  Aligned_cols=48  Identities=23%  Similarity=0.250  Sum_probs=36.9

Q ss_pred             cccceEEEee----CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe
Q psy535            7 SLETRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE   54 (460)
Q Consensus         7 ~~~~r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   54 (460)
                      ...+|+.+..    +.+|.|.+++.+|+|.|+|.+........+..+.|+|+
T Consensus        46 ~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v~   97 (97)
T cd05846          46 SYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTVY   97 (97)
T ss_pred             CccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEEC
Confidence            4566776643    24899999999999999999987655545777888873

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.78  E-value=8.4e-05  Score=53.61  Aligned_cols=48  Identities=31%  Similarity=0.548  Sum_probs=38.1

Q ss_pred             CcccceEEEee------CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe
Q psy535            6 GSLETRVVIKK------DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE   54 (460)
Q Consensus         6 ~~~~~r~~~~~------~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   54 (460)
                      ..+.+|..+..      +.+|.|.+++.+|+|.|+|.+.+..... ...+.|.|.
T Consensus        61 ~~y~gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~-~~~v~L~V~  114 (117)
T cd05901          61 QEYMGRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDT-QDTVSLDVS  114 (117)
T ss_pred             CcccCcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCccc-EEEEEEEEE
Confidence            36678888863      3499999999999999999999876543 667777764

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.78  E-value=0.00012  Score=51.03  Aligned_cols=66  Identities=17%  Similarity=0.175  Sum_probs=40.9

Q ss_pred             ceeeEEEEEEEecC-CCCCeEEEeeCCeecCcc-ccccEEEeecCe------EEEeecCCCCCeEEEEEEEcCC
Q psy535           70 FRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPY-QTKDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        70 ~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      .+..++|.|.+.|. |....|+|+++|..+... .........+++      |.|..-...+...|+|.+.+..
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~   86 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG   86 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence            45568999999995 555689999999886321 111112222333      4343333345678999998754

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.77  E-value=5.3e-05  Score=54.53  Aligned_cols=48  Identities=31%  Similarity=0.515  Sum_probs=37.9

Q ss_pred             CcccceEEEee------CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe
Q psy535            6 GSLETRVVIKK------DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE   54 (460)
Q Consensus         6 ~~~~~r~~~~~------~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   54 (460)
                      ..+.+|.++..      +.+|.|.+++.+|+|.|+|.+..... .....+.|.|.
T Consensus        54 ~~y~gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~-~~~~~v~L~V~  107 (110)
T cd05902          54 KAFQGRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGIN-DEQDTVPLEVT  107 (110)
T ss_pred             hhcccEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCc-ccEEEEEEEEE
Confidence            46778999965      34999999999999999999998543 23666777764

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.75  E-value=0.00022  Score=49.97  Aligned_cols=66  Identities=18%  Similarity=0.342  Sum_probs=43.9

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCe--eEEEcCCCccCCcccEE-------EecceEEEccccceece-EEEEEEecccce
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPT--ITWQRRDGVALPKNRVK-------IVGGNITIEGLRRVDFG-YYECVVSNEVAT  232 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~--~~W~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~~~g-~y~C~a~n~~g~  232 (460)
                      .+..|+.++|.|.+.  .+.|.+.  +.|++++. .+......       ....++.+..- .+|.| .|+|.|.+..+.
T Consensus        12 ~~~eG~~~tL~C~v~--g~~P~a~L~i~W~rG~~-~l~~~~~~~~~~~~~~~~stlt~~~~-r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          12 WQPVGKNYTLQCDVP--GVAPRQNLTVVLLRGNE-TLSRQPFGDNTKSPVNAPATITITVD-REDHGANFSCETELDLRP   87 (100)
T ss_pred             cccCCCcEEEEEEEc--CcCCCCcEEEEEeeCCE-EcccceeccccCCCceeEEEEEEecc-hhhCCcEEEEEEEeccCc
Confidence            467899999999995  6788886  79999544 44322211       12234555544 45555 899999987655

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=97.73  E-value=0.022  Score=48.60  Aligned_cols=154  Identities=23%  Similarity=0.284  Sum_probs=90.6

Q ss_pred             CCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEE-EEcc---CCCCCCCcceEEEeec-----ceEEEEecCCCCCCc
Q psy535          300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV-VKTK---GPKPGPPRNVSVTEVN-----NGFVISWQPPLERAS  370 (460)
Q Consensus       300 ~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~-~~~~---~~~P~~p~~~~~~~~~-----~~v~l~W~~~~~~~~  370 (460)
                      +-..+.+.++.++..|..++.+.|.... .....+. +.+.   .+-|.-|.+..+...+     ++++|.|.+..+.. 
T Consensus       126 ~~~~f~l~~~~~g~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~~-  203 (300)
T PF10179_consen  126 GLRHFRLSGVKPGERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDRS-  203 (300)
T ss_pred             ceEEEEECCCCCCCeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCCC-
Confidence            4567999999999999999988775432 2222333 2222   2346678887775443     68999999876532 


Q ss_pred             cceEEEEEEEEcCC-eeeeccccCCCCccccc--ccceecCceeeeeecc------CCCCcceEEECCCCcCceEEEEEE
Q psy535          371 LIQYYLIKYRTDGS-WKTLNKGQIRPEENSYL--GEYREQGNKDWLPIPV------TPPGSTQITINRLTPATTYEFQVV  441 (460)
Q Consensus       371 ~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~i~~L~p~~~Y~~~v~  441 (460)
                        ..|-|+.+.... +.......   ..+...  ..++..+.........      ....-...+|.+|+||+.|.|.|.
T Consensus       204 --~kYCvy~~~~~~~~~~~~~~~---~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~  278 (300)
T PF10179_consen  204 --IKYCVYRREEHSNYQERSVSR---MPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVY  278 (300)
T ss_pred             --ceEEEEEEEecCchhhhhhcc---cCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEE
Confidence              567777775332 11100000   000111  0000001111111111      112234568999999999999999


Q ss_pred             EeecCCCCCCCceeEeecC
Q psy535          442 GKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       442 a~n~~G~s~~s~~~~~~T~  460 (460)
                      +.-..|.+-+-..+.|+|+
T Consensus       279 ~~~~~G~sl~Y~s~~VkTr  297 (300)
T PF10179_consen  279 VNGPSGQSLPYRSKWVKTR  297 (300)
T ss_pred             EecCCCceeecceEEEEec
Confidence            9999998877777778774

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.73  E-value=0.00025  Score=51.69  Aligned_cols=63  Identities=27%  Similarity=0.471  Sum_probs=45.6

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCc-cC-----------------CcccEEEe-----cceEEEccccceec
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV-AL-----------------PKNRVKIV-----GGNITIEGLRRVDF  219 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~-~~-----------------~~~~~~~~-----~~~l~i~~~~~~~~  219 (460)
                      .+..|++++|.|.+   .+ +...+.|++.... .+                 ...++...     ..+|.|.+++.+|+
T Consensus         9 ~v~~G~~v~l~C~~---~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds   84 (110)
T cd05899           9 IKGRGQSVTLRCSQ---TS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS   84 (110)
T ss_pred             EEcCCCcEEEEEEE---CC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence            67899999999998   45 6678999985321 10                 11233221     23699999999999


Q ss_pred             eEEEEEEecc
Q psy535          220 GYYECVVSNE  229 (460)
Q Consensus       220 g~y~C~a~n~  229 (460)
                      |.|.|.+.+.
T Consensus        85 g~Y~Ca~~~~   94 (110)
T cd05899          85 AVYLCASSLG   94 (110)
T ss_pred             EEEEEEeeCC
Confidence            9999998764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>KOG4258|consensus

Probab=97.68  E-value=6.8e-05  Score=70.78  Aligned_cols=129  Identities=22%  Similarity=0.340  Sum_probs=85.9

Q ss_pred             eEEEccCccCccEEEEEEEEcCCCC----CCCCCcEEEEccC-----CCCCCCcceEEEeecceEEEEecCCCCCCccce
Q psy535          303 QITINRLTPATTYEFQVVGKNELGD----GMLSNIVVVKTKG-----PKPGPPRNVSVTEVNNGFVISWQPPLERASLIQ  373 (460)
Q Consensus       303 ~~~i~~l~~~~~~~~~~~a~n~~G~----~~~s~~~~~~~~~-----~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~  373 (460)
                      .+.|.+|...+.|...+.|.|.++.    +..+. +..++..     +.|+ |.........+++.|+|..|..+++-|.
T Consensus       783 ~~vi~~Lrh~tlY~i~l~aCnh~~~~~~cS~a~~-v~~RT~~~~~aD~i~g-~v~we~~~~~~~v~l~w~EP~~pNGli~  860 (1025)
T KOG4258|consen  783 SYVISGLRHFTLYRIDLQACNHATPKCGCSHAAF-VFARTMPTMGADDIPG-PVTWECHIEMNSVILRWLEPKEPNGLIL  860 (1025)
T ss_pred             hhhhhccccchhhhhhHhhhcccccccccchhhh-hhhccccccccccCCC-ceeEecccCcceEEEecCCCCCCCccEE
Confidence            5678889999999999999988764    32222 2222221     1222 2223333334699999999999999999


Q ss_pred             EEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCc
Q psy535          374 YYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN  453 (460)
Q Consensus       374 ~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~  453 (460)
                      .|.|.|+..+.-.....           +.+            ..-.......+.+|.|| .|.++|+|..-+|.|++.+
T Consensus       861 ~Y~Vk~r~~~~et~v~c-----------vsR------------~~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~  916 (1025)
T KOG4258|consen  861 NYEVKYRRNGDETHVEC-----------VSR------------MDYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTE  916 (1025)
T ss_pred             EEEEEEeeccCcchhhh-----------hhh------------hhhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcC
Confidence            99999998765221111           000            00012345567788887 9999999999999999988


Q ss_pred             eeEe
Q psy535          454 IVVV  457 (460)
Q Consensus       454 ~~~~  457 (460)
                      ...+
T Consensus       917 ~~~~  920 (1025)
T KOG4258|consen  917 SVIF  920 (1025)
T ss_pred             Ccce
Confidence            7554

>PHA02633 hypothetical protein; Provisional

Probab=97.68  E-value=0.00014  Score=44.44  Aligned_cols=38  Identities=24%  Similarity=0.320  Sum_probs=28.8

Q ss_pred             CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec
Q psy535           17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF   55 (460)
Q Consensus        17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~   55 (460)
                      +..|+|-++..+|+|.|.|..+|..-- ...++.|.|..
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~c-~~~si~l~V~~   54 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETYS-DMMKFDLCICL   54 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCee-EEEEEEEEEee
Confidence            348999999999999999999975332 24556666653

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.64  E-value=0.00025  Score=51.33  Aligned_cols=66  Identities=29%  Similarity=0.342  Sum_probs=46.5

Q ss_pred             ccCCCCeEEEEeeeeccCCC-CCCeeEEEcCCCcc-----------------CCcccEEEe------cceEEEcccccee
Q psy535          163 QRKVGESVDMHCEAQEAEGT-QKPTITWQRRDGVA-----------------LPKNRVKIV------GGNITIEGLRRVD  218 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~-p~~~~~W~~~~~~~-----------------~~~~~~~~~------~~~l~i~~~~~~~  218 (460)
                      .+..|++++|.|.+   ... +...+.|++.....                 ....++...      ..+|.|.+++.+|
T Consensus         2 ~v~~G~~v~L~C~~---~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D   78 (105)
T cd00099           2 SVSEGESVTLSCTY---SGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPED   78 (105)
T ss_pred             eecCCCCEEEEEEE---eCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHH
Confidence            46789999999998   343 56789999843210                 011233221      2268999999999


Q ss_pred             ceEEEEEEecccc
Q psy535          219 FGYYECVVSNEVA  231 (460)
Q Consensus       219 ~g~y~C~a~n~~g  231 (460)
                      .|.|.|.+.+..+
T Consensus        79 ~G~Y~C~v~~~~~   91 (105)
T cd00099          79 SAVYYCAVSLSGG   91 (105)
T ss_pred             CEEEEEEEecCCC
Confidence            9999999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.64  E-value=0.00046  Score=48.09  Aligned_cols=72  Identities=7%  Similarity=0.054  Sum_probs=44.0

Q ss_pred             eEEEEEEEecCCCCCeEEEeeCCeecCc-----cccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535           73 QGVVQCHIKANPTFQYVTWTKDKRLLEP-----YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV  146 (460)
Q Consensus        73 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v  146 (460)
                      -..+.|.+.+..+++.|+|+++......     .....+  ...+.|.+.....+|...|+|++.+..-.......++|
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~--tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~l   93 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTV--TVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVTL   93 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCE--EEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEE
Confidence            4689999987666669999997221110     001111  11224666666667788899999987655545555544

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.61  E-value=0.00014  Score=53.28  Aligned_cols=46  Identities=26%  Similarity=0.422  Sum_probs=33.0

Q ss_pred             cccceEEEee-----CCeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEE
Q psy535            7 SLETRVVIKK-----DGTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLN   52 (460)
Q Consensus         7 ~~~~r~~~~~-----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~   52 (460)
                      ...+|+.+..     +.+|.|.+++.+|+|.|+|.+.|..+.. ...++.|.
T Consensus        63 ~f~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  114 (115)
T cd05880          63 RFKGRVVWDGNIMRRDASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLR  114 (115)
T ss_pred             cccCeEEEecCCcCCceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence            4456776653     3489999999999999999999876532 13445554

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.59  E-value=0.00034  Score=48.83  Aligned_cols=67  Identities=16%  Similarity=0.205  Sum_probs=38.6

Q ss_pred             ecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCeEEEe---ecCCC-CCeEEEEEEEcC
Q psy535           68 LPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT---RVNQN-HQGRYTCTPYNA  134 (460)
Q Consensus        68 ~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~-d~G~y~C~~~~~  134 (460)
                      +..+..++|.|.+.+. |....++|.+||..+............+.++.+.   .+... ....|+|.+...
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~   84 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHE   84 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEEC
Confidence            3345678999999994 6666799999998864321111111111132221   22333 344599999863

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.57  E-value=0.00022  Score=50.78  Aligned_cols=67  Identities=18%  Similarity=0.285  Sum_probs=40.2

Q ss_pred             cceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccc--cEEEe--ecCe------EEEeecCCCCCeEEEEEEEcCC
Q psy535           69 PFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTK--DIVVM--QNGS------LLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        69 ~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~--~~~~~--~~~~------l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      ..++.++|.|.+.|. |....++|+++|..+......  .....  .+++      |.|..-...+...|+|.+....
T Consensus        14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            346789999999995 545578999999886532110  11111  1243      3332222235577999998654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.56  E-value=0.00025  Score=50.94  Aligned_cols=65  Identities=12%  Similarity=0.207  Sum_probs=42.0

Q ss_pred             eecceeeEEEEEEEecCCCCCeEEEeeCC----ee---cC---cc-c---------cccEEEeec---CeEEEeecCCCC
Q psy535           67 YLPFRLQGVVQCHIKANPTFQYVTWTKDK----RL---LE---PY-Q---------TKDIVVMQN---GSLLFTRVNQNH  123 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~----~~---~~---~~-~---------~~~~~~~~~---~~l~i~~~~~~d  123 (460)
                      .+.+|++|+|.|....... ..+.|+|-.    ..   +.   .. .         ..++.....   ..|.|.+++.+|
T Consensus         2 ~v~~G~~vtL~C~~~~~~~-~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sD   80 (104)
T cd05720           2 DAELGQKVELKCEVLNSSP-TGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKEN   80 (104)
T ss_pred             cccCCCeEEEEEEecCCCC-CcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHH
Confidence            3578999999999865432 369999832    11   10   00 0         112222111   259999999999


Q ss_pred             CeEEEEEEE
Q psy535          124 QGRYTCTPY  132 (460)
Q Consensus       124 ~G~y~C~~~  132 (460)
                      +|.|.|.+.
T Consensus        81 sgtY~Ca~~   89 (104)
T cd05720          81 EGYYFCSVA   89 (104)
T ss_pred             CEEEEEEEc
Confidence            999999875

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.50  E-value=0.00079  Score=48.68  Aligned_cols=64  Identities=20%  Similarity=0.294  Sum_probs=44.0

Q ss_pred             ccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCC-ccC-------------CcccEEEe----cceEEEccccceeceEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDG-VAL-------------PKNRVKIV----GGNITIEGLRRVDFGYYE  223 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~-~~~-------------~~~~~~~~----~~~l~i~~~~~~~~g~y~  223 (460)
                      .+..|++++|.|.+   .+.. ...+.|++... ...             ...++...    ...|.|.+++.+|+|.|.
T Consensus        11 ~v~~G~~v~L~C~~---~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~   87 (106)
T cd04980          11 SVSPGESATISCKA---SQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYY   87 (106)
T ss_pred             EECCCCCEEEEEEE---CCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEE
Confidence            67899999999998   3443 56799987431 100             01233322    125899999999999999


Q ss_pred             EEEecc
Q psy535          224 CVVSNE  229 (460)
Q Consensus       224 C~a~n~  229 (460)
                      |.+.+.
T Consensus        88 Ca~~~~   93 (106)
T cd04980          88 CQQYGT   93 (106)
T ss_pred             EEEeCC
Confidence            998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.49  E-value=0.00027  Score=52.06  Aligned_cols=46  Identities=24%  Similarity=0.393  Sum_probs=32.5

Q ss_pred             cccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEE
Q psy535            7 SLETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLN   52 (460)
Q Consensus         7 ~~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~   52 (460)
                      ...+|+.+..+     .+|.|.+++.+|+|.|.|.+.+..... ....+.|.
T Consensus        64 ~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  115 (116)
T cd05715          64 RFKDRVEWVGNPSRKDASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR  115 (116)
T ss_pred             cccCcEEEecCCcCCeeEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence            34467777543     489999999999999999999765432 12345544

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>KOG4152|consensus

Probab=97.47  E-value=0.00057  Score=60.96  Aligned_cols=74  Identities=27%  Similarity=0.455  Sum_probs=59.2

Q ss_pred             EccCccCccEEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEeecceEEEEecCCCCCC-ccceEEEEEE
Q psy535          306 INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEVNNGFVISWQPPLERA-SLIQYYLIKY  379 (460)
Q Consensus       306 i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~~~~v~l~W~~~~~~~-~~i~~y~i~~  379 (460)
                      -..|.++..|.|++.|.|..|.+.+|..+.+.+-. ..|.+|..+++...-..+.+.|++|...+ +.|..|..+.
T Consensus       651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~k~~eGi~l~weppt~p~sg~Iieys~yl  726 (830)
T KOG4152|consen  651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIKKTIEGISLVWEPPTKPGSGTIIEYSPYL  726 (830)
T ss_pred             ccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcccccccccccceeecccCCCCCCCcceEEeehhh
Confidence            34578899999999999999999999988876653 44788888888776678999999997764 4677776654

>smart00406 IGv Immunoglobulin V-Type

Probab=97.45  E-value=0.00043  Score=47.20  Aligned_cols=59  Identities=17%  Similarity=0.331  Sum_probs=37.3

Q ss_pred             eEEEEEEEecCCCC-CeEEEeeCCe--e---cCc-----------cccccEEEeec-----CeEEEeecCCCCCeEEEEE
Q psy535           73 QGVVQCHIKANPTF-QYVTWTKDKR--L---LEP-----------YQTKDIVVMQN-----GSLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        73 ~~~l~C~~~~~~~~-~~v~W~~~~~--~---~~~-----------~~~~~~~~~~~-----~~l~i~~~~~~d~G~y~C~  130 (460)
                      +++|.|.+...... ..+.|++...  .   +..           ....++.....     .+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            47899988764432 3689998431  1   100           11234443332     3599999999999999996


Q ss_pred             E
Q psy535          131 P  131 (460)
Q Consensus       131 ~  131 (460)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.45  E-value=0.00027  Score=44.23  Aligned_cols=50  Identities=20%  Similarity=0.389  Sum_probs=34.6

Q ss_pred             ceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535           70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        70 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      .|.+|+|+|...+.    .+.|.+++..+..         .+..+.+.+-. +++|.|+|.+.+
T Consensus         6 sGTtVtlTCP~~~~----~i~W~~n~~~~~g---------~~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           6 SGTTVTVTCPLSGD----DIKWKKNDQVSQG---------SDEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             eccEEEEECCCCCC----CceEEeCCccCCC---------CCceEEeeccC-CCCceEEEEeCC
Confidence            48899999976532    3999999966542         11234444445 889999999853

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.43  E-value=0.0011  Score=45.33  Aligned_cols=64  Identities=19%  Similarity=0.226  Sum_probs=42.4

Q ss_pred             eeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEE-eecCe------EEEeecCCCCCeEEEEEEEcCCCC
Q psy535           71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVV-MQNGS------LLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~------l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      ++.++|.|.+.+. |....|+|+++|..+.......... ..+++      |.+.   ..+...|+|.+......
T Consensus         8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            7789999999985 5555799999999875322221122 23443      4443   56677899999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.39  E-value=0.00076  Score=45.26  Aligned_cols=58  Identities=17%  Similarity=0.322  Sum_probs=39.2

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCcccE--------EEecceEEEccccceeceEEEEEEeccc
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV--------KIVGGNITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~--------~~~~~~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      +.|.|...  .+.|.+.|+|++++. .+.....        ....+.|.+..-...|...|+|.|.|..
T Consensus         2 ~~L~C~s~--gSkP~A~I~W~k~~~-~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~   67 (82)
T cd05883           2 IELNCTAM--ASKPAATIRWFKGNK-ELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA   67 (82)
T ss_pred             EEEEEEec--CCCCCCEEEEEECCE-ECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence            68999985  788999999999553 4433211        1122356676555666669999999865

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.37  E-value=0.00074  Score=48.98  Aligned_cols=70  Identities=13%  Similarity=0.234  Sum_probs=42.1

Q ss_pred             ecceeeEEEEEEEecC-CCCCeEEEeeCCeecCcccc-ccEEEeec-Ce------EEEeecCCCC-CeEEEEEEEcCCCC
Q psy535           68 LPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQT-KDIVVMQN-GS------LLFTRVNQNH-QGRYTCTPYNAHGT  137 (460)
Q Consensus        68 ~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~-~~~~~~~~-~~------l~i~~~~~~d-~G~y~C~~~~~~g~  137 (460)
                      +..++.++|.|.+.+. |....|+|++||..+..... .......+ ++      |.|......+ ...|+|.+......
T Consensus        15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence            3456679999999996 44457999999988753211 11111121 33      4444333223 57899999875443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.36  E-value=0.0019  Score=50.19  Aligned_cols=79  Identities=19%  Similarity=0.307  Sum_probs=54.9

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC----------C--cccEEE-----ecceEEEccccceeceEEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL----------P--KNRVKI-----VGGNITIEGLRRVDFGYYECV  225 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~----------~--~~~~~~-----~~~~l~i~~~~~~~~g~y~C~  225 (460)
                      .+.+|++++|.|...  .+...+.++|++.++...          +  ..++..     ....+.|.++..+|+|.|.|.
T Consensus        26 ~V~ege~VtLsCs~t--~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         26 TVSEHVNVKISCNKT--SSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEcCCCCEEEEEecC--CCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            678899999999973  355677899998533111          1  124443     345799999999999999998


Q ss_pred             Eec-ccc-eeeeeeEEEEec
Q psy535          226 VSN-EVA-TIVQAAQLVVEG  243 (460)
Q Consensus       226 a~n-~~g-~~~~~~~l~v~~  243 (460)
                      ..- +.| ..+...-|.|..
T Consensus       104 F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             EEecCCCCCceeEEEEEEEc
Confidence            753 345 555566666653

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.35  E-value=0.00095  Score=49.23  Aligned_cols=63  Identities=25%  Similarity=0.452  Sum_probs=44.8

Q ss_pred             ccCCCCeEEEEeeeeccCC--CCCCeeEEEcCCC--ccC-----------------CcccEEEe------cceEEEcccc
Q psy535          163 QRKVGESVDMHCEAQEAEG--TQKPTITWQRRDG--VAL-----------------PKNRVKIV------GGNITIEGLR  215 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~--~p~~~~~W~~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~  215 (460)
                      .+..|+.++|.|.+   .+  .+.+.+.|++...  .+.                 ...++...      ...|.|.+++
T Consensus         9 ~~~~G~~v~l~C~~---~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~   85 (116)
T cd04982           9 TREESKSVTISCKV---SGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLE   85 (116)
T ss_pred             EeCCCCCEEEEEEE---eCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECC
Confidence            67889999999998   44  5677899998421  110                 12233321      1258999999


Q ss_pred             ceeceEEEEEEec
Q psy535          216 RVDFGYYECVVSN  228 (460)
Q Consensus       216 ~~~~g~y~C~a~n  228 (460)
                      .+|+|.|.|.+..
T Consensus        86 ~~Dsg~Y~C~~~~   98 (116)
T cd04982          86 KEDSATYYCAYWE   98 (116)
T ss_pred             HHHCEEEEEEEec
Confidence            9999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.34  E-value=0.0016  Score=45.34  Aligned_cols=79  Identities=9%  Similarity=0.026  Sum_probs=48.2

Q ss_pred             eeecceeeEEE-EEEEecCCCCCeEEEeeCCeecCc-----cccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535           66 QYLPFRLQGVV-QCHIKANPTFQYVTWTKDKRLLEP-----YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        66 ~~~~~g~~~~l-~C~~~~~~~~~~v~W~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                      ..+.+|+.+.+ .|.+.+..+++.|+|+.+......     ..+..+  .-.+.|.+.....+|...++|.+.+..-...
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~--TV~S~~~l~p~r~d~G~~vtC~V~H~al~~~   88 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTT--TVTSEYIWVPSRHANGHPLTCVVSHPALQQD   88 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCE--EEEEEEEEEeCHHHCCcEEEEEEeCcccCCC
Confidence            34566788888 999877766679999986332110     011111  2223477766677788889999987644333


Q ss_pred             eeeEEEE
Q psy535          140 SSGQMEV  146 (460)
Q Consensus       140 ~~~~~~v  146 (460)
                      ....+.|
T Consensus        89 ~~~~~~L   95 (97)
T cd07704          89 FRITHIL   95 (97)
T ss_pred             ceeeEEe
Confidence            3333333

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.29  E-value=0.0011  Score=46.46  Aligned_cols=64  Identities=11%  Similarity=0.145  Sum_probs=38.4

Q ss_pred             ceeeEEEEEEEecC-CCCCeEEEeeCCeecCccc--cccEEEeecCeEEEe---ecCCCC---CeEEEEEEEcCC
Q psy535           70 FRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQ--TKDIVVMQNGSLLFT---RVNQNH---QGRYTCTPYNAH  135 (460)
Q Consensus        70 ~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~l~i~---~~~~~d---~G~y~C~~~~~~  135 (460)
                      .++.++|.|.+.+. |....|+|+|||.. ....  .... ...++++.+.   .+...|   ...|+|++....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~-~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAV-LQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCE-eCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            35578999999995 65667999999997 3211  1111 1114433221   223333   567999998654

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.28  E-value=0.00085  Score=46.93  Aligned_cols=72  Identities=22%  Similarity=0.315  Sum_probs=42.3

Q ss_pred             ceeeeecceeeEEEEEEEecC--CCCCeEEEeeCCeecCccccccEEEeecCeEEEee---cCC---CCCeEEEEEEEcC
Q psy535           63 PTVQYLPFRLQGVVQCHIKAN--PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR---VNQ---NHQGRYTCTPYNA  134 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~---~d~G~y~C~~~~~  134 (460)
                      |....+..+..++|.|.+.+.  |....|+|.++|.. ...... .....++++.+..   +..   .....|+|.+.+.
T Consensus        11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~-~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~   88 (99)
T cd04986          11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTS-AESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHP   88 (99)
T ss_pred             cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcC-cccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECC
Confidence            433334457789999999995  44567999999875 221111 1223345443332   222   3335699999875


Q ss_pred             CC
Q psy535          135 HG  136 (460)
Q Consensus       135 ~g  136 (460)
                      ..
T Consensus        89 ~l   90 (99)
T cd04986          89 EG   90 (99)
T ss_pred             Cc
Confidence            43

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.25  E-value=0.0014  Score=41.33  Aligned_cols=48  Identities=19%  Similarity=0.346  Sum_probs=35.4

Q ss_pred             eeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535           72 LQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        72 ~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      ..|.|.|.+.     .+|+|++ |..+...        .+.+|.+.....+-.|.|+|.+.+
T Consensus         7 ~~V~L~C~~~-----tsi~W~k-G~~~~~~--------~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           7 GKVFLKCNGA-----TNITWKK-GKEILEV--------SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             ceEEEEecCC-----CcEEEec-Ccccccc--------cccEEeccCcccCCCcceEecCcc
Confidence            4689999652     2699999 6655421        144688888888889999998865

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.24  E-value=0.00034  Score=51.47  Aligned_cols=48  Identities=29%  Similarity=0.468  Sum_probs=34.5

Q ss_pred             CcccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE
Q psy535            6 GSLETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV   53 (460)
Q Consensus         6 ~~~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   53 (460)
                      ....+|+.+..++     +|.|.+++.+|+|.|.|.+...........+.|.|
T Consensus        62 ~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   62 PSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             TTETTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             cceeeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            3556788877764     69999999999999999999863222233444443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.24  E-value=0.0022  Score=45.54  Aligned_cols=63  Identities=22%  Similarity=0.346  Sum_probs=43.0

Q ss_pred             ccCCCCeEEEEeeeeccCCC--CCCeeEEEcCCCc-cC-------------CcccEEEe----cceEEEccccceeceEE
Q psy535          163 QRKVGESVDMHCEAQEAEGT--QKPTITWQRRDGV-AL-------------PKNRVKIV----GGNITIEGLRRVDFGYY  222 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~--p~~~~~W~~~~~~-~~-------------~~~~~~~~----~~~l~i~~~~~~~~g~y  222 (460)
                      .+..|++++|.|.+   ...  ....+.|++.... ..             ...++...    ...|.|.+++.+|+|.|
T Consensus         2 ~v~~G~~v~l~C~~---~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y   78 (98)
T cd04984           2 SVSPGETVTITCTG---SSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADY   78 (98)
T ss_pred             ccCCCCCEEEEEEE---cCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEE
Confidence            46789999999998   343  4567899874321 11             01133321    12589999999999999


Q ss_pred             EEEEec
Q psy535          223 ECVVSN  228 (460)
Q Consensus       223 ~C~a~n  228 (460)
                      .|.+.+
T Consensus        79 ~C~~~~   84 (98)
T cd04984          79 YCQVWD   84 (98)
T ss_pred             EEEEcc
Confidence            999865

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>KOG1480|consensus

Probab=97.15  E-value=5.3e-05  Score=70.60  Aligned_cols=125  Identities=17%  Similarity=0.307  Sum_probs=80.6

Q ss_pred             EEEeecCCCCC---eeEEE--EEEeCCCCcceeeeEEEEec-CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee
Q psy535           20 LVINPVGSDDS---GLYMC--EVSNGIGEPQAAQAYLNVEF-PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK   93 (460)
Q Consensus        20 L~i~~~~~~d~---G~Y~C--~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~   93 (460)
                      +.|..-..++.   -.|.|  .|....|...+....+.+.+ ...+...|....+..+..+.+.|...-..+...+.|++
T Consensus        87 i~Isr~~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k  166 (909)
T KOG1480|consen   87 IDISRQQVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLK  166 (909)
T ss_pred             eeeehhhhhcccCccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccc
Confidence            44444444433   34655  45555554433333332221 22345567777788888899999874443444799999


Q ss_pred             CCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535           94 DKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL  147 (460)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~  147 (460)
                      ++..+.+  ........+..|.+..++..|.|+|+|+|.|..+.. ....++|.
T Consensus       167 ~e~~~~p--d~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r-~~~~~~v~  217 (909)
T KOG1480|consen  167 NEVVIDP--DANVIRASDHNLIISQARLSDSGNYTCEATNIVAKR-KSDPATVQ  217 (909)
T ss_pred             cCCCCCc--cccchhhhcCCccccchhhhhcccceeeeehhhccc-cccceEEE
Confidence            9999887  445555667789999999999999999999877654 33334443

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.14  E-value=0.0018  Score=45.00  Aligned_cols=64  Identities=25%  Similarity=0.425  Sum_probs=41.8

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc---------cEEEecceEEEccccceeceEEEEEEecccce
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN---------RVKIVGGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      |+.+.+.|.+.  .+.|.+.+.|+.+++......         ........|.+..-...+...++|.+.+....
T Consensus        14 ~~~~~~~C~s~--~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSS--GGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEE--EEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeC--CeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            78999999885  899999999999665441110         11111234666555555667899999986543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=97.10  E-value=0.002  Score=46.55  Aligned_cols=81  Identities=22%  Similarity=0.334  Sum_probs=55.4

Q ss_pred             CCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEc--CCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          343 PGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTD--GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       343 P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      ..+|.++++....-...|+|+++.. ...-..|.|+|+..  +.|.....                         - ...
T Consensus        22 lp~P~nv~~~s~nf~~iL~W~~~~~-~~~~~~ytVq~~~~~~~~W~~v~~-------------------------C-~~i   74 (107)
T PF01108_consen   22 LPAPQNVTVDSVNFKHILRWDPGPG-SPPNVTYTVQYKKYGSSSWKDVPG-------------------------C-QNI   74 (107)
T ss_dssp             GSSCEEEEEEEETTEEEEEEEESTT-SSSTEEEEEEEEESSTSCEEEECC-------------------------E-EEE
T ss_pred             CCCCCeeEEEEECCceEEEeCCCCC-CCCCeEEEEEEEecCCcceeeccc-------------------------e-ecc
Confidence            5689999999988899999999654 33678899999942  33443310                         0 012


Q ss_pred             CcceEEECCCC--cCceEEEEEEEeecCCCCC
Q psy535          421 GSTQITINRLT--PATTYEFQVVGKNELGDGM  450 (460)
Q Consensus       421 ~~~~~~i~~L~--p~~~Y~~~v~a~n~~G~s~  450 (460)
                      ..+...+++..  +...|.+||+|.-....|.
T Consensus        75 ~~~~Cdlt~~~~~~~~~Y~~rV~A~~~~~~S~  106 (107)
T PF01108_consen   75 TETSCDLTDETSDPSESYYARVRAEVGNQTSD  106 (107)
T ss_dssp             SSSEEECTTCCTTTTSEEEEEEEEEETTEEEE
T ss_pred             cccceeCcchhhcCcCCEEEEEEEEeCCccCC
Confidence            33555565433  7889999999998765553

...

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.04  E-value=0.0053  Score=43.60  Aligned_cols=65  Identities=23%  Similarity=0.421  Sum_probs=44.8

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc-------------CCcccEEEe------cceEEEccccceeceEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA-------------LPKNRVKIV------GGNITIEGLRRVDFGYYE  223 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~-------------~~~~~~~~~------~~~l~i~~~~~~~~g~y~  223 (460)
                      .+..|++++|.|...  .......+.|++.....             ....+....      ..+|.|.++..+|+|.|.
T Consensus         3 ~~~~G~~vtl~C~~~--~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   80 (98)
T cd05716           3 TGELGGSVTIPCPYP--PKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYW   80 (98)
T ss_pred             EEEeCCeEEEEeeCC--CCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEE
Confidence            467899999999973  22345678999854211             012233332      126899999999999999


Q ss_pred             EEEecc
Q psy535          224 CVVSNE  229 (460)
Q Consensus       224 C~a~n~  229 (460)
                      |.+...
T Consensus        81 C~~~~~   86 (98)
T cd05716          81 CGVGDD   86 (98)
T ss_pred             EEcccC
Confidence            998764

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.03  E-value=0.0048  Score=45.44  Aligned_cols=64  Identities=25%  Similarity=0.381  Sum_probs=44.5

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc--------------CCcccEEEe------cceEEEccccceeceEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA--------------LPKNRVKIV------GGNITIEGLRRVDFGYY  222 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~--------------~~~~~~~~~------~~~l~i~~~~~~~~g~y  222 (460)
                      .+..|++++|.|...  .......+.|++.....              ....|+...      ..+|.|.++...|+|.|
T Consensus        10 ~~~~G~~v~L~C~~~--~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y   87 (116)
T cd07706          10 SVQVGEEVTLNCRYE--TSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKY   87 (116)
T ss_pred             EEcCCCCEEEEEEEe--CCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence            678999999999983  22345679999742111              012344432      12589999999999999


Q ss_pred             EEEEec
Q psy535          223 ECVVSN  228 (460)
Q Consensus       223 ~C~a~n  228 (460)
                      .|.+..
T Consensus        88 ~C~~~~   93 (116)
T cd07706          88 FCALST   93 (116)
T ss_pred             EEEEEC
Confidence            999874

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PHA02633 hypothetical protein; Provisional

Probab=97.02  E-value=0.0018  Score=39.67  Aligned_cols=36  Identities=17%  Similarity=0.213  Sum_probs=26.8

Q ss_pred             ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535          110 QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus       110 ~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      ....|.|.++..+|+|.|.|...|..-....+..++
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~   51 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLC   51 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEE
Confidence            445699999999999999999987655544443333

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=96.95  E-value=0.0046  Score=42.10  Aligned_cols=60  Identities=22%  Similarity=0.335  Sum_probs=37.1

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE---ecc------eEEEccccceeceEEEEEEecccce
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI---VGG------NITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~---~~~------~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      +.|.|.+.  .+.|.+.+.|++++. .+.......   .++      .|.+......+...|+|.+.+....
T Consensus         2 ~~L~C~~~--~~~P~~~v~W~~~~~-~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSS--GSKPAATIRWFKGDK-ELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEec--CcCcCCeEEEEECCE-EccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            68999994  667889999999543 333221111   111      2344434444567999999987654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.93  E-value=0.0039  Score=43.06  Aligned_cols=66  Identities=17%  Similarity=0.163  Sum_probs=40.2

Q ss_pred             ecceeeEEEEEEEecCCCC--CeEEEeeCCeecCcccccc-----EEEeecCeEEEeecCCCCCe-EEEEEEEcC
Q psy535           68 LPFRLQGVVQCHIKANPTF--QYVTWTKDKRLLEPYQTKD-----IVVMQNGSLLFTRVNQNHQG-RYTCTPYNA  134 (460)
Q Consensus        68 ~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~  134 (460)
                      +.+|..+++.|.+.+..+.  ..+.|+++...+.......     ........+.|... ++|.| .|.|+|.-.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~   85 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH   85 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence            4789999999999765433  4699999776654211100     00011124566554 55555 899998643

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>KOG0613|consensus

Probab=96.92  E-value=0.0048  Score=61.90  Aligned_cols=304  Identities=15%  Similarity=0.105  Sum_probs=158.9

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec------CCe----eE-------Ecce--eeeecceeeEEEEEE
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF------PAK----VT-------FTPT--VQYLPFRLQGVVQCH   79 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~------~p~----~~-------~~~~--~~~~~~g~~~~l~C~   79 (460)
                      ++.|.+....+.+.|+|...+..+.. ...+...+..      +..    +.       ..+.  ......+..+++.|.
T Consensus       279 t~~i~~~~~~~~~s~t~~~~~~~~q~-~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~  357 (1205)
T KOG0613|consen  279 TKTIQNDGPEPELSWTVADKRQGCQD-RFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTA  357 (1205)
T ss_pred             cccccccCCccccceeeecccCCccc-ceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccc
Confidence            67788888889999999988877664 2222222211      110    01       1111  112223456789999


Q ss_pred             EecCCCCCeEEEeeCCeecCccccccEEE---eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee----CCC
Q psy535           80 IKANPTFQYVTWTKDKRLLEPYQTKDIVV---MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR----KPP  152 (460)
Q Consensus        80 ~~~~~~~~~v~W~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~----~~p  152 (460)
                      ..+.+.+..+.|+.++.............   .....+.|..+...+.+.|.|.|.|..|........++...    .++
T Consensus       358 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~  437 (1205)
T KOG0613|consen  358 LSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPP  437 (1205)
T ss_pred             ccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCc
Confidence            99988776799999776554322111111   11235888889999999999999999887655544444321    112


Q ss_pred             ceeeCCCcc-cccCCCCeEEEEeeeeccCCCCCC--eeEEEcCCCccCCcccEEEe---cceEEEccccceeceEEEEEE
Q psy535          153 AFTIKPEAM-YQRKVGESVDMHCEAQEAEGTQKP--TITWQRRDGVALPKNRVKIV---GGNITIEGLRRVDFGYYECVV  226 (460)
Q Consensus       153 ~~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~a  226 (460)
                      .+.. .... .....-+.+.+.|..   ...+.+  .++|.+.+. ..........   -.+|.+.-....+.+.|.-..
T Consensus       438 ~~kk-~~~~t~~L~~~~~i~~~~~~---~s~~~~~~~~tt~~~~~-~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~  512 (1205)
T KOG0613|consen  438 KFKK-DVSTTDLLTVKDEITVRTPD---SSTSMPMTTVTTIKDGL-PLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRAL  512 (1205)
T ss_pred             cccc-cccccccccCCcccccccCC---CCccccceeEeeccCCc-ccccccccccccchhhheeeccCCCccchhhhhh
Confidence            2221 1111 112233678888887   555544  555555322 2222222222   224556666666777775443


Q ss_pred             ecccceeeeeeEEEEecCCCCCCC-ceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEE
Q psy535          227 SNEVATIVQAAQLVVEGTQPHAPY-NITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQIT  305 (460)
Q Consensus       227 ~n~~g~~~~~~~l~v~~~~p~~p~-~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (460)
                      ....+.............-..++. .+....-.....+.|.+-..........|....+  ....|.... ...+ .+..
T Consensus       513 ~~~~~k~~~~~~~~l~~~~s~a~~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~--qlg~~~~~~-~r~g-tt~t  588 (1205)
T KOG0613|consen  513 RTLQGKPVPSLDRKLPAAKSSAPKPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATR--QLGVWRVPE-SRPG-TTET  588 (1205)
T ss_pred             hccCCCCCCcccccccccccCCcccccccccCCCCcccccCCCcccccccchhhhhhhh--hccCCcccc-cCCC-cccc
Confidence            333333222221111111111121 1112222334455555432222222122222222  112222222 2223 7788


Q ss_pred             EccCccCccEEEEEEEEcCCCCCCCCC
Q psy535          306 INRLTPATTYEFQVVGKNELGDGMLSN  332 (460)
Q Consensus       306 i~~l~~~~~~~~~~~a~n~~G~~~~s~  332 (460)
                      +-+..++..|.+...+.+..|.+..+.
T Consensus       589 ~~~~~p~~~~~~t~~~k~~~gE~~ps~  615 (1205)
T KOG0613|consen  589 IGSILPGHEYHVTIKAKNELGESRPSS  615 (1205)
T ss_pred             cccccccccceeehhhhhcccccCCCC
Confidence            888999999999999999999887763

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=96.87  E-value=0.0026  Score=44.09  Aligned_cols=47  Identities=28%  Similarity=0.375  Sum_probs=38.5

Q ss_pred             ccceEEEeeC-CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe
Q psy535            8 LETRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE   54 (460)
Q Consensus         8 ~~~r~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   54 (460)
                      .++|+.+..+ .+|.|..+++.|+|.|.-.+++..|......+.|.|+
T Consensus        60 ~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   60 FNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             HHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             ccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            5688888775 5999999999999999999999999887777777765

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>smart00060 FN3 Fibronectin type 3 domain

Probab=96.85  E-value=0.02  Score=38.47  Aligned_cols=67  Identities=40%  Similarity=0.671  Sum_probs=44.3

Q ss_pred             ecceEEEEeecCCCCCCCceeeEEEEEEecCCC---CeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCC
Q psy535          257 TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK---DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD  327 (460)
Q Consensus       257 ~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~  327 (460)
                      ...++.++|.++.....   ..|.+.+......   .|....... ....+.+.+|.++..|.+++.|.+..|.
T Consensus        13 ~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~L~~~~~Y~v~v~a~~~~g~   82 (83)
T smart00060       13 TSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVTP-SSTSYTLTGLKPGTEYEFRVRAVNGAGE   82 (83)
T ss_pred             eCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEecC-CccEEEEeCcCCCCEEEEEEEEEcccCC
Confidence            44589999996543332   3556655543322   244433322 3578999999999999999999987653

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=96.72  E-value=0.0088  Score=40.68  Aligned_cols=60  Identities=17%  Similarity=0.255  Sum_probs=37.1

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEE-E---------ecceEEEccccceeceEEEEEEecccce
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVK-I---------VGGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~-~---------~~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      ++|.|.+.  ...|...++|++++.. +...... .         ....|.+..-...+...|+|.+.+....
T Consensus         2 ~~LtC~a~--gf~P~~~itW~kng~~-l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTS--GSKPAADIRWFKNDKE-IKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeC--CccCCCEEEEEECCEE-CcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            68999994  6678889999995543 3322111 1         1123455444455566899999876433

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=96.69  E-value=0.012  Score=42.23  Aligned_cols=63  Identities=19%  Similarity=0.401  Sum_probs=41.9

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCc---cC-------C------------cccEEEe----cceEEEccccc
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV---AL-------P------------KNRVKIV----GGNITIEGLRR  216 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~---~~-------~------------~~~~~~~----~~~l~i~~~~~  216 (460)
                      .+..|++++|.|.+   .......+.|++....   .+       .            ..++...    ...|.|.+++.
T Consensus         2 ~v~~G~~vtL~C~~---~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~   78 (104)
T cd05720           2 DAELGQKVELKCEV---LNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQK   78 (104)
T ss_pred             cccCCCeEEEEEEe---cCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCH
Confidence            36789999999987   3334457889875422   10       0            1112211    12589999999


Q ss_pred             eeceEEEEEEec
Q psy535          217 VDFGYYECVVSN  228 (460)
Q Consensus       217 ~~~g~y~C~a~n  228 (460)
                      +|+|.|.|.+.+
T Consensus        79 sDsgtY~Ca~~~   90 (104)
T cd05720          79 ENEGYYFCSVAS   90 (104)
T ss_pred             HHCEEEEEEEcc
Confidence            999999998763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=96.69  E-value=0.011  Score=40.31  Aligned_cols=59  Identities=17%  Similarity=0.339  Sum_probs=36.3

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE--e-c-ce------EEEccccceeceEEEEEEecccc
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI--V-G-GN------ITIEGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~--~-~-~~------l~i~~~~~~~~g~y~C~a~n~~g  231 (460)
                      ++|.|.+.  .+.|.+.+.|++++. .+.......  . + ++      +.+......+...|+|.+.+...
T Consensus         2 ~~LtC~a~--g~~P~~~ItW~k~g~-~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSS--GSKPAANIKWRKGDQ-ELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEec--CccCCCEeEEEECCE-ECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            68999994  566889999999553 333221111  1 1 22      33334445566799999988654

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=96.63  E-value=0.012  Score=42.57  Aligned_cols=64  Identities=20%  Similarity=0.403  Sum_probs=42.4

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc--C--------------------CcccEEE--ec----ceEEEccc
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA--L--------------------PKNRVKI--VG----GNITIEGL  214 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~--~--------------------~~~~~~~--~~----~~l~i~~~  214 (460)
                      .+..|++++|.|.+.  .......+.|++.....  .                    ...+...  ..    ..|.|.++
T Consensus         2 ~v~~G~~vtL~C~~~--~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   79 (107)
T cd07700           2 LVQTNNTVKLSCEAK--GISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV   79 (107)
T ss_pred             EEcCCCCEEEEEEEe--cCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC
Confidence            467899999999983  11234579999754320  0                    0123322  11    24899999


Q ss_pred             cceeceEEEEEEec
Q psy535          215 RRVDFGYYECVVSN  228 (460)
Q Consensus       215 ~~~~~g~y~C~a~n  228 (460)
                      +.+|+|.|.|...+
T Consensus        80 ~~~Dsg~YyCa~~~   93 (107)
T cd07700          80 KPEDSGTYFCMTVG   93 (107)
T ss_pred             CHHHCEEEEEeEcC
Confidence            99999999999753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd00098 IgC Immunoglobulin Constant domain

Probab=96.63  E-value=0.0057  Score=43.12  Aligned_cols=63  Identities=27%  Similarity=0.421  Sum_probs=40.3

Q ss_pred             CCCCeEEEEeeeeccCCC-C-CCeeEEEcCCCccCCcccE--E---Eecc------eEEEccccceeceEEEEEEecccc
Q psy535          165 KVGESVDMHCEAQEAEGT-Q-KPTITWQRRDGVALPKNRV--K---IVGG------NITIEGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       165 ~~g~~~~l~C~~~~~~~~-p-~~~~~W~~~~~~~~~~~~~--~---~~~~------~l~i~~~~~~~~g~y~C~a~n~~g  231 (460)
                      ..|+.++|.|.+   .|. | ...++|++++. .+.....  .   ..++      .|.+......+.+.|+|.+.+...
T Consensus        11 ~~~~~~~L~C~a---~g~~P~~~~i~W~~~g~-~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLA---TGFYPPDITVTWLKNGK-ELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEE---eeEECCCcEEEEEECCE-ECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            468899999999   565 5 36899999543 4332221  1   1122      344444444588999999988654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd00096 Ig Immunoglobulin domain

Probab=96.62  E-value=0.012  Score=38.32  Aligned_cols=58  Identities=31%  Similarity=0.493  Sum_probs=40.7

Q ss_pred             EEEEeeeeccCCCCCCeeEEEcCCCccCCcc--------cEEEecceEEEccccceeceEEEEEEeccc
Q psy535          170 VDMHCEAQEAEGTQKPTITWQRRDGVALPKN--------RVKIVGGNITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      +.|.|.+   .+.+...+.|.+.+.......        ........+.+.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~---~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLA---SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEe---cCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            4689998   457788999998554332211        112233468889999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>smart00406 IGv Immunoglobulin V-Type

Probab=96.62  E-value=0.0013  Score=44.80  Aligned_cols=31  Identities=42%  Similarity=0.700  Sum_probs=26.0

Q ss_pred             cccceEEEeeC-----CeEEEeecCCCCCeeEEEEE
Q psy535            7 SLETRVVIKKD-----GTLVINPVGSDDSGLYMCEV   37 (460)
Q Consensus         7 ~~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~   37 (460)
                      ...+|+.+..+     .+|.|.+++.+|+|.|.|.+
T Consensus        46 ~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       46 SYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             ccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence            45688888765     38999999999999999964

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.61  E-value=0.0027  Score=46.44  Aligned_cols=67  Identities=18%  Similarity=0.301  Sum_probs=36.3

Q ss_pred             ceeeEEEEEEEecCCC----CCeEEEeeCCeecCccccccEEE--------------eecCeEEEeecCCCCCeEEEEEE
Q psy535           70 FRLQGVVQCHIKANPT----FQYVTWTKDKRLLEPYQTKDIVV--------------MQNGSLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        70 ~g~~~~l~C~~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~--------------~~~~~l~i~~~~~~d~G~y~C~~  131 (460)
                      =+++|.|.|.+.....    ...|.|..++..+-.........              ..+.+|.+.....- .|.|+|++
T Consensus        26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV  104 (130)
T PF08204_consen   26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV  104 (130)
T ss_dssp             T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred             cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence            3788999999965221    13599999888764322211111              11124777764444 89999999


Q ss_pred             EcCCCC
Q psy535          132 YNAHGT  137 (460)
Q Consensus       132 ~~~~g~  137 (460)
                      ......
T Consensus       105 t~~~~e  110 (130)
T PF08204_consen  105 TELSRE  110 (130)
T ss_dssp             EETTEE
T ss_pred             EecCCC
Confidence            875543

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=96.48  E-value=0.011  Score=42.65  Aligned_cols=88  Identities=22%  Similarity=0.360  Sum_probs=55.2

Q ss_pred             CCCcceEEEeecceEEEEecCCCC-----CCc-------cceEEEEEEEEcCCeeeeccccCCCCcccccccceecCcee
Q psy535          344 GPPRNVSVTEVNNGFVISWQPPLE-----RAS-------LIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKD  411 (460)
Q Consensus       344 ~~p~~~~~~~~~~~v~l~W~~~~~-----~~~-------~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (460)
                      +||. +.+....+.|.|.+.+|..     ...       ....|.|.|+..++-...                       
T Consensus         4 gPP~-v~v~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~-----------------------   59 (106)
T PF09294_consen    4 GPPS-VNVSSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKK-----------------------   59 (106)
T ss_dssp             -SSE-EEEEEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEE-----------------------
T ss_pred             cCCE-EEEEECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccce-----------------------
Confidence            3555 8887777899999998861     111       235799999987752000                       


Q ss_pred             eeeeccCCCCcceEEECCCCcCceEEEEEEEeecC--CCCCCCceeEeec
Q psy535          412 WLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL--GDGMLSNIVVVKT  459 (460)
Q Consensus       412 ~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~--G~s~~s~~~~~~T  459 (460)
                          .........+.|.+|.|++.|=|+|.|....  -.|.+|++.=++|
T Consensus        60 ----~~~~~~~~~~~l~~L~p~t~YCv~V~~~~~~~~~~s~~S~~~C~~t  105 (106)
T PF09294_consen   60 ----KEIETKNSSVTLSDLKPGTNYCVSVQAFSPSQNKNSQPSEPQCITT  105 (106)
T ss_dssp             ----EEEESSSEEEEEES--TTSEEEEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred             ----EEEeecCCEEEEeCCCCCCCEEEEEEEEeccCCCcCCCCCCEeEeC
Confidence                0011245667899999999999999993333  3477777765554

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.41  E-value=0.0043  Score=50.80  Aligned_cols=39  Identities=31%  Similarity=0.355  Sum_probs=34.8

Q ss_pred             CcccCcccceEEEeeCCeEEEeecCCCCCeeEEEEEEeC
Q psy535            2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNG   40 (460)
Q Consensus         2 ~~~~~~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   40 (460)
                      |+++...++++.|...|.|.+.+..++++|.|+|...-.
T Consensus        21 ~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   21 NGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence            456677888999999999999999999999999998854

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.37  E-value=0.032  Score=40.00  Aligned_cols=68  Identities=10%  Similarity=0.066  Sum_probs=41.9

Q ss_pred             eeeeecceeeEEEEEEEecCCCCC--eEEEeeCCe-ecC-----------c-cccccEEEeec-----CeEEEeecCCCC
Q psy535           64 TVQYLPFRLQGVVQCHIKANPTFQ--YVTWTKDKR-LLE-----------P-YQTKDIVVMQN-----GSLLFTRVNQNH  123 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~~~--~v~W~~~~~-~~~-----------~-~~~~~~~~~~~-----~~l~i~~~~~~d  123 (460)
                      ....+..|.+++|.|.+.+..-..  .+.|+|... .++           . ....++....+     -+|.|.+++.+|
T Consensus         6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D   85 (115)
T cd05721           6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ   85 (115)
T ss_pred             CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence            334455677899999997754332  689998321 100           0 01122222221     159999999999


Q ss_pred             CeEEEEEE
Q psy535          124 QGRYTCTP  131 (460)
Q Consensus       124 ~G~y~C~~  131 (460)
                      .+.|.|..
T Consensus        86 Ta~Y~Ca~   93 (115)
T cd05721          86 TDIYFCKI   93 (115)
T ss_pred             CeEEEEEe
Confidence            99999974

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=96.36  E-value=0.0058  Score=45.17  Aligned_cols=34  Identities=32%  Similarity=0.458  Sum_probs=27.8

Q ss_pred             cccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeC
Q psy535            7 SLETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNG   40 (460)
Q Consensus         7 ~~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~   40 (460)
                      ...+|+++..+     .+|.|.+++.+|+|.|.|.+...
T Consensus        64 ~f~gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          64 STRGRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cccccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence            34579988532     38999999999999999999774

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=96.34  E-value=0.039  Score=39.91  Aligned_cols=44  Identities=18%  Similarity=0.393  Sum_probs=27.2

Q ss_pred             CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC-CeeEEEcCCCc
Q psy535          150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK-PTITWQRRDGV  195 (460)
Q Consensus       150 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~-~~~~W~~~~~~  195 (460)
                      .+|...+-.........|+.++|.|.+.  ...|. ..++|++++..
T Consensus         4 ~~P~~p~i~~~~~~~~~g~~~tL~C~a~--gF~P~~i~v~W~kng~~   48 (111)
T cd05772           4 AKPSVPVVSGPSGRANPGQSVNFTCSAH--GFSPRDITVKWLKNGNE   48 (111)
T ss_pred             cCCCCcEeCCchhccCCCCCEEEEEEEe--eEeCCCCEEEEEECCEE
Confidence            3444333332222456788899999994  44554 58999995443

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.32  E-value=0.013  Score=36.81  Aligned_cols=52  Identities=23%  Similarity=0.457  Sum_probs=33.7

Q ss_pred             CCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecc
Q psy535          165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       165 ~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      ..|..|+|+|+.   ..   ..+.|.+++ .....     .+..+.+.+.. ++.|.|.|.+.+.
T Consensus         5 isGTtVtlTCP~---~~---~~i~W~~n~-~~~~g-----~~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPL---SG---DDIKWKKND-QVSQG-----SDEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCC---CC---CCceEEeCC-ccCCC-----CCceEEeeccC-CCCceEEEEeCCC
Confidence            368999999985   22   239999955 33332     22234444455 7899999998643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA03270 envelope glycoprotein C; Provisional

Probab=96.28  E-value=0.78  Score=40.98  Aligned_cols=79  Identities=19%  Similarity=0.264  Sum_probs=62.4

Q ss_pred             eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEE
Q psy535          113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQ  190 (460)
Q Consensus       113 ~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~  190 (460)
                      .|.|..+....+|.|+=...+..+.......++|....+|.+.+.+..   +..|+.....|.+.  .-+|.  ..+.|+
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P---vL~Ge~Y~AtC~va--~YYPp~Sv~lrWf  257 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA---VLEGEPFGATCVAA--NYYPGDRAAFRWF  257 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc---cccCCCceEEEEee--eecCCCceEEEEE
Confidence            599999999999999998777666555667788888899998888765   57899999999984  33333  389999


Q ss_pred             cCCCcc
Q psy535          191 RRDGVA  196 (460)
Q Consensus       191 ~~~~~~  196 (460)
                      .++...
T Consensus       258 ~ng~~V  263 (466)
T PHA03270        258 EGGDEV  263 (466)
T ss_pred             eCCccc
Confidence            955544

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.24  E-value=0.054  Score=37.78  Aligned_cols=72  Identities=19%  Similarity=0.247  Sum_probs=43.7

Q ss_pred             CCCcccccCCCCeEEE-EeeeeccCCCCCCeeEEEcCCCccCCcccEE------EecceEEEccccceeceEEEEEEecc
Q psy535          157 KPEAMYQRKVGESVDM-HCEAQEAEGTQKPTITWQRRDGVALPKNRVK------IVGGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       157 ~~~~~~~~~~g~~~~l-~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~------~~~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      .+.....+..|+.+.+ .|.+.  .+.|.+.|.|+.+...........      ...+.+.+......|.-.++|.+...
T Consensus         6 ~~~~~~~~~~g~~~~vA~C~sa--~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~   83 (97)
T cd07704           6 SPGPSLLIDGGNGTTLAACCAA--EGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP   83 (97)
T ss_pred             CCCCeeEeecCcceeEEEEEcc--CCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence            3444445677888888 99985  899999999997432221110001      11224555444555666899999875


Q ss_pred             c
Q psy535          230 V  230 (460)
Q Consensus       230 ~  230 (460)
                      .
T Consensus        84 a   84 (97)
T cd07704          84 A   84 (97)
T ss_pred             c
Confidence            3

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.04  E-value=0.07  Score=37.33  Aligned_cols=64  Identities=19%  Similarity=0.248  Sum_probs=38.6

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccE------EEecceEEEccccceeceEEEEEEecccce
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV------KIVGGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      .....+.|.+.  .|.|.+.|.|+++..........      ....+.|.+......+.-.|+|.+.+..-.
T Consensus        15 ~~~~va~C~s~--~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          15 EPVTVATCVSA--NGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             CccEEEEEECC--CCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            34577899985  89999999999841111111110      111224555544555556899999887543

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>KOG4367|consensus

Probab=95.91  E-value=0.019  Score=50.21  Aligned_cols=83  Identities=20%  Similarity=0.237  Sum_probs=65.3

Q ss_pred             eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcE
Q psy535          255 VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV  334 (460)
Q Consensus       255 ~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~  334 (460)
                      .....++++.|..|...+.+. .+|+++..++..+.+..+-..  ..+.++|++|.-...|.-++.|.|..|.+..|..+
T Consensus       449 ~t~nns~t~~wkqp~~~~~~~-dg~~leld~g~~g~frevy~g--~etmctvdglhfns~y~arvka~n~tg~s~ys~tl  525 (699)
T KOG4367|consen  449 CTHNNSATLSWKQPPLSTVPA-DGYILELDDGNGGQFREVYVG--KETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTL  525 (699)
T ss_pred             hccCCceEEEeecCCCCCCCC-cceEEEeecCCCCceeEEEec--CceeEEecceecchhHHHHHHHhhccCCCccccee
Confidence            455678999999443333333 799999988877776666443  57889999999999999999999999999999988


Q ss_pred             EEEccC
Q psy535          335 VVKTKG  340 (460)
Q Consensus       335 ~~~~~~  340 (460)
                      ...+..
T Consensus       526 ~lqts~  531 (699)
T KOG4367|consen  526 VLQTSE  531 (699)
T ss_pred             Eeeecc
Confidence            877653

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=95.91  E-value=0.054  Score=39.83  Aligned_cols=65  Identities=22%  Similarity=0.347  Sum_probs=41.9

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCC--cc--C---------------CcccEEEe--c--c--eEEEccccce
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDG--VA--L---------------PKNRVKIV--G--G--NITIEGLRRV  217 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~--~~--~---------------~~~~~~~~--~--~--~l~i~~~~~~  217 (460)
                      .+..|+.++|.|..... ......+.|++...  .+  +               ...++...  .  .  .|.|.++..+
T Consensus         8 ~v~~G~~vtL~C~~~~~-~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   86 (117)
T cd04981           8 LVKPGQSLKLSCKASGF-TFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPE   86 (117)
T ss_pred             EEcCCCCEEEEEEEeCC-CcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHH
Confidence            57889999999987311 11245688987432  11  0               01233321  1  1  5899999999


Q ss_pred             eceEEEEEEec
Q psy535          218 DFGYYECVVSN  228 (460)
Q Consensus       218 ~~g~y~C~a~n  228 (460)
                      |+|.|.|.+..
T Consensus        87 Dsa~YyCa~~~   97 (117)
T cd04981          87 DTAVYYCARGL   97 (117)
T ss_pred             HCEEEEEEEEc
Confidence            99999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>KOG1480|consensus

Probab=95.88  E-value=0.0073  Score=57.08  Aligned_cols=58  Identities=26%  Similarity=0.347  Sum_probs=47.0

Q ss_pred             CCcccCcccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe
Q psy535            1 MNTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK   58 (460)
Q Consensus         1 ~~~~~~~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~   58 (460)
                      |++.+...+..+....++.|+|..+++.|.|.|+|+|.|..+...+..+.+.|.....
T Consensus       166 k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~gg  223 (909)
T KOG1480|consen  166 KNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVNGG  223 (909)
T ss_pred             ccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEEEcCc
Confidence            4566666677777778889999999999999999999999888777777777765433

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=95.81  E-value=0.031  Score=38.92  Aligned_cols=59  Identities=20%  Similarity=0.282  Sum_probs=38.8

Q ss_pred             EEEeeCCeecCccc-cccEE-EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535           89 VTWTKDKRLLEPYQ-TKDIV-VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus        89 v~W~~~~~~~~~~~-~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      ++|..+........ +.++. ..++-+|.|..++..|+|.|.-++++..|.. ....+.|.|
T Consensus        46 ltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V-~~~~FqVsV  106 (108)
T PF11465_consen   46 LTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKV-CTKNFQVSV  106 (108)
T ss_dssp             EEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCE-EEEEEEEEE
T ss_pred             EEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcE-EEEEEEEEe
Confidence            67766655543311 22332 2345589999999999999999999988876 566666654

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA02982 hypothetical protein; Provisional

Probab=95.77  E-value=0.029  Score=44.12  Aligned_cols=74  Identities=16%  Similarity=0.323  Sum_probs=49.1

Q ss_pred             eeecceeeEEEEEEEecCCCCCeEEEeeCCee-cCccc----------------cc--cE-EEeecCeEEEeecCCCCCe
Q psy535           66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL-LEPYQ----------------TK--DI-VVMQNGSLLFTRVNQNHQG  125 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-~~~~~----------------~~--~~-~~~~~~~l~i~~~~~~d~G  125 (460)
                      .....+++|.|.|.........+..|++++.. +....                ..  +. .....++|+|.++..+..|
T Consensus        34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G  113 (251)
T PHA02982         34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG  113 (251)
T ss_pred             hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence            34567899999999755555567899985432 21000                00  01 1122357999999999999


Q ss_pred             EEEEEEEcCCCCcc
Q psy535          126 RYTCTPYNAHGTQG  139 (460)
Q Consensus       126 ~y~C~~~~~~g~~~  139 (460)
                      -|+|.+....+..+
T Consensus       114 CYtc~~ks~~~k~E  127 (251)
T PHA02982        114 CFTCEAKDAEGKEE  127 (251)
T ss_pred             ceEEEEecCCCchh
Confidence            99999987665544

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.74  E-value=0.018  Score=47.30  Aligned_cols=47  Identities=21%  Similarity=0.382  Sum_probs=37.8

Q ss_pred             CeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           87 QYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        87 ~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      |.+.|..++..... ....+.+...|.|.+.+.+..++|.|+|.....
T Consensus        13 P~y~W~GP~g~~l~-gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   13 PTYLWTGPNGKPLS-GNSYVNITETGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CceEEECCCCcccC-CCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence            37999996544432 456778888999999999999999999988654

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=95.64  E-value=0.098  Score=36.54  Aligned_cols=64  Identities=14%  Similarity=0.176  Sum_probs=38.8

Q ss_pred             eEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEE------EecceEEEccccceeceEEEEEEecccceee
Q psy535          169 SVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVK------IVGGNITIEGLRRVDFGYYECVVSNEVATIV  234 (460)
Q Consensus       169 ~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  234 (460)
                      .+.+.|.+.  .+.|.+.|.|+++...........      ...+.|.+......+.-.|+|++.+......
T Consensus        17 ~~va~C~s~--~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~   86 (95)
T cd07703          17 VPVAKCVSA--NGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEP   86 (95)
T ss_pred             cEEEEEEcC--CCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence            577899884  799999999998522111111000      1122455555555556689999998754433

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=95.48  E-value=0.17  Score=36.01  Aligned_cols=88  Identities=24%  Similarity=0.393  Sum_probs=56.5

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      +|+.|.++...... ..++.-|++....+.+ ..|.+.|...+. |.....-.                        ...
T Consensus         7 ~p~~P~~~~C~S~~~etftC~W~~g~~~~l~-~~y~L~Y~~~~~~~~eCp~~~------------------------~~~   61 (104)
T PF09067_consen    7 PPEKPENLKCFSREMETFTCFWEPGSEGNLP-TNYTLFYKKEGEEWKECPDYS------------------------TSG   61 (104)
T ss_dssp             HCCCCEEEEEEBSSSS-EEEEEEEESSSTST-CEEEEEEEETTSEEEEESESS------------------------TTE
T ss_pred             CCCCCccCccCCCCCCcEEEEeeCCCCCCCC-CcEEEEEEeCCCCCccCCCeE------------------------ecC
Confidence            37788888887666 5899999998775543 339999997642 33332100                        000


Q ss_pred             CCc-----ceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535          420 PGS-----TQITINRLTPATTYEFQVVGKNELGDGMLSNIV  455 (460)
Q Consensus       420 ~~~-----~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~  455 (460)
                      .+.     ..|.-.+..-...|.|+|.|.|..|.- .|+.+
T Consensus        62 ~ns~~~~~C~F~~~~t~lf~~y~i~V~a~~~~~~~-~s~~l  101 (104)
T PF09067_consen   62 PNSTVRHICYFPKSDTSLFVPYCIQVEATNALGSI-TSRVL  101 (104)
T ss_dssp             TTEEEEEEEEE-CCGCSSSSEEEEEEEEEETTEEE-EEEEE
T ss_pred             CCCceeEEEEcCCCCeEEEEEEEEEEEeccCCCcE-EeeEE
Confidence            112     344445788899999999999998743 34444

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=95.36  E-value=0.12  Score=35.97  Aligned_cols=63  Identities=17%  Similarity=0.204  Sum_probs=38.6

Q ss_pred             ccCCCCeEEEEeeeeccCCCCC--CeeEEEcCCCccCCcccEEE---------ecceEEEccccceece-EEEEEEecc
Q psy535          163 QRKVGESVDMHCEAQEAEGTQK--PTITWQRRDGVALPKNRVKI---------VGGNITIEGLRRVDFG-YYECVVSNE  229 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~~~g-~y~C~a~n~  229 (460)
                      .+..|..+++.|.+.  ...|.  ..+.|++ +...+....+..         ....+.+... .+|.| .|+|.|.-.
T Consensus        11 ~l~~G~~vtv~C~v~--~v~P~~~l~v~Llk-G~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~   85 (99)
T cd07689          11 PLEEGKPVTVKCEVP--DVYPFDRLEIELLK-GETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH   85 (99)
T ss_pred             cccCCceEEEEEEec--CcccCCceEEEEec-CcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence            346899999999995  55555  6899987 443332221111         1123455443 55655 899998743

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=95.24  E-value=0.074  Score=37.74  Aligned_cols=30  Identities=10%  Similarity=0.226  Sum_probs=21.2

Q ss_pred             ccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCC
Q psy535          163 QRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDG  194 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~  194 (460)
                      ....++.++|.|.+.  .-.| ...+.|++++.
T Consensus        13 ~~~~~~~~~L~C~~~--gfyP~~i~v~W~~~g~   43 (100)
T cd07699          13 ELEKSGKATLVCLIN--DFYPGFATVQWKVDGA   43 (100)
T ss_pred             HHccCCCcEEEEEEE--eEECCCCEEEEEECCE
Confidence            444577899999994  3344 45899999544

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=95.24  E-value=0.11  Score=33.00  Aligned_cols=50  Identities=20%  Similarity=0.328  Sum_probs=36.2

Q ss_pred             CCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEec
Q psy535          166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSN  228 (460)
Q Consensus       166 ~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  228 (460)
                      ..+.|.|.|..       ...+.|.+ +......     .+.++.+......-.|.|.|.+.+
T Consensus         5 ~~~~V~L~C~~-------~tsi~W~k-G~~~~~~-----~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNG-------ATNITWKK-GKEILEV-----SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecC-------CCcEEEec-Ccccccc-----cccEEeccCcccCCCcceEecCcc
Confidence            45678999974       14599998 5444322     155688888888889999999877

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=95.10  E-value=0.083  Score=36.93  Aligned_cols=61  Identities=20%  Similarity=0.334  Sum_probs=34.5

Q ss_pred             CCeEEEEeeeeccCCC-CCC-eeEEEcCCCccCCcc---cEEE-ecceEE---EccccceeceEEEEEEeccc
Q psy535          167 GESVDMHCEAQEAEGT-QKP-TITWQRRDGVALPKN---RVKI-VGGNIT---IEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~-p~~-~~~W~~~~~~~~~~~---~~~~-~~~~l~---i~~~~~~~~g~y~C~a~n~~  230 (460)
                      ++.++|.|.+   .|. |.. .+.|.+++.......   .... .++++.   ...+...+...|+|.+.+..
T Consensus        14 ~~~~~L~C~a---~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHA---TGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEE---EEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            6789999999   564 543 899999553222111   1111 122221   22333446788999987643

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=95.01  E-value=0.29  Score=35.23  Aligned_cols=78  Identities=26%  Similarity=0.454  Sum_probs=55.6

Q ss_pred             CCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeecc-CCCCceEEEccCc--cCccEEEEEEE
Q psy535          245 QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT-PPGSTQITINRLT--PATTYEFQVVG  321 (460)
Q Consensus       245 ~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~--~~~~~~~~~~a  321 (460)
                      ...+|.++..........|.|+++....+  ...|.++|+..+...|..+... ......+-+.+..  ....|.++|+|
T Consensus        21 ~lp~P~nv~~~s~nf~~iL~W~~~~~~~~--~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A   98 (107)
T PF01108_consen   21 SLPAPQNVTVDSVNFKHILRWDPGPGSPP--NVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVRA   98 (107)
T ss_dssp             SGSSCEEEEEEEETTEEEEEEEESTTSSS--TEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEEE
T ss_pred             cCCCCCeeEEEEECCceEEEeCCCCCCCC--CeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEEE
Confidence            44577888888888999999998443332  3689999997777888887311 1144667777644  57788889988


Q ss_pred             EcC
Q psy535          322 KNE  324 (460)
Q Consensus       322 ~n~  324 (460)
                      .-.
T Consensus        99 ~~~  101 (107)
T PF01108_consen   99 EVG  101 (107)
T ss_dssp             EET
T ss_pred             EeC
Confidence            754

...

>PHA03269 envelope glycoprotein C; Provisional

Probab=94.84  E-value=3.1  Score=38.01  Aligned_cols=80  Identities=15%  Similarity=0.265  Sum_probs=59.4

Q ss_pred             EEEeecCCCCCeEEEEEEEc-CCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcC
Q psy535          114 LLFTRVNQNHQGRYTCTPYN-AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR  192 (460)
Q Consensus       114 l~i~~~~~~d~G~y~C~~~~-~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~  192 (460)
                      |.|.++...++|.|+=.+.+ ..+.......++|....+|.+.+.+..   +..|+.....|.+.+.-......+.|+.+
T Consensus       291 L~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P---VL~Ge~YkAtC~vA~YYPp~SvrlrWf~n  367 (566)
T PHA03269        291 LHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP---VLLGNPYAAYCKVNKYYPPHSVIVKWTSN  367 (566)
T ss_pred             eEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc---cccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            99999999999999876543 334445667888888899988887764   57899999999984221222348999996


Q ss_pred             CCcc
Q psy535          193 DGVA  196 (460)
Q Consensus       193 ~~~~  196 (460)
                      ++..
T Consensus       368 g~~V  371 (566)
T PHA03269        368 FGNI  371 (566)
T ss_pred             Cccc
Confidence            4443

>KOG4802|consensus

Probab=94.59  E-value=0.13  Score=45.16  Aligned_cols=92  Identities=20%  Similarity=0.335  Sum_probs=50.9

Q ss_pred             CCCCcceEEEe--ecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          343 PGPPRNVSVTE--VNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       343 P~~p~~~~~~~--~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      +.+|.+..+..  ...++.+.|.....    +.-|.+.+..-..|.....             -.+.+...|-.+... .
T Consensus       145 ~l~Pr~k~~y~r~~~g~~av~w~~~~~----~~v~~~~~~vr~~w~~g~h-------------ase~~~thwQtv~~t-~  206 (516)
T KOG4802|consen  145 QLPPRPKILYFRRSRGSHAVDWKIESS----LLVYYVHVEVRSHWGRGFH-------------ASELGPTHWQTVEKT-M  206 (516)
T ss_pred             CCCCcchhhhhhhccCceeeeeeeccc----cceeeeehhhhhhhccccc-------------ccccccccceeeeec-C
Confidence            44555544433  23579999987543    2333333332222221111             012233445444432 2


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCCCCCC
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGDGMLS  452 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s  452 (460)
                      ....+..+++.||.+|+|||.|+|..|.-.+|
T Consensus       207 ~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs  238 (516)
T KOG4802|consen  207 EENTYIFTDMRPGRWYEFRVAAVNAYGFRGFS  238 (516)
T ss_pred             CCceeeeeecCcceeEEEEEeeeecccccccC
Confidence            23377888999999999999999998753333

>KOG4806|consensus

Probab=94.58  E-value=0.78  Score=39.60  Aligned_cols=147  Identities=17%  Similarity=0.186  Sum_probs=85.5

Q ss_pred             EEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEc---cCCCCCCCcceEEEeec---ceEEEEecCCCCCCccceEEEE
Q psy535          304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT---KGPKPGPPRNVSVTEVN---NGFVISWQPPLERASLIQYYLI  377 (460)
Q Consensus       304 ~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~---~~~~P~~p~~~~~~~~~---~~v~l~W~~~~~~~~~i~~y~i  377 (460)
                      +.-..+.+...|.++....|....- ....+-..+   ..+.|.-|.+-++....   ++.+|.|....+.   -..|-|
T Consensus       286 ~~Qfvv~~~~~~~~rf~~~ndde~~-~~v~V~aSt~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d~---~~kyCI  361 (454)
T KOG4806|consen  286 IRQFVVLPGERYLMRFEPSNDDEAL-QKVMVAASTEATFRDLPELPQDTTVKNVRRRCSSATIAWNGSPDE---ELKYCI  361 (454)
T ss_pred             eeEEEecCCCceEEEEEecCCchhh-heeEeeeecccccCcCCCCCCCceEeeeccccchheeeeccCcch---heeEEE
Confidence            4455677899999999998875321 111121221   22447778887777664   5799999976542   456777


Q ss_pred             EEEEcCCeeeeccccCCCCccccccc--cee---cCceeeeeec---cCCCCcceEEECCCCcCceEEEEEEEeecCCCC
Q psy535          378 KYRTDGSWKTLNKGQIRPEENSYLGE--YRE---QGNKDWLPIP---VTPPGSTQITINRLTPATTYEFQVVGKNELGDG  449 (460)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~---~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s  449 (460)
                      +.+...+ ......    ..+.|=+.  .+.   .---.|....   ..+.+..+-+|.||.|+..|.+-|.|.-.+|..
T Consensus       362 y~~~~~~-~e~~v~----~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~  436 (454)
T KOG4806|consen  362 YVFNLPQ-RERSVV----DFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKP  436 (454)
T ss_pred             EEecccc-hhhhhh----hhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCcc
Confidence            7665332 000000    01111000  000   0111244432   222334566799999999999999999999988


Q ss_pred             CCCceeEeec
Q psy535          450 MLSNIVVVKT  459 (460)
Q Consensus       450 ~~s~~~~~~T  459 (460)
                      -+-..+.++|
T Consensus       437 lpyqa~~v~t  446 (454)
T KOG4806|consen  437 LPYQALTVHT  446 (454)
T ss_pred             ccceeEEEEe
Confidence            7766666665

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=94.36  E-value=3.5  Score=36.57  Aligned_cols=40  Identities=15%  Similarity=0.360  Sum_probs=29.9

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeE
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT   60 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~   60 (460)
                      ++.+.+++..|.|.|+|.......+.....+.|.|  .|.+.
T Consensus        82 sf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrV--mPKId  121 (500)
T PHA02914         82 SFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRK--APKID  121 (500)
T ss_pred             EEEecCcccccCCcEEEEEEeCCceeEEEEEEEEE--cccee
Confidence            68889999999999999999877665555555544  45543

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=94.25  E-value=0.33  Score=34.08  Aligned_cols=30  Identities=27%  Similarity=0.477  Sum_probs=22.4

Q ss_pred             ccCCCCeEEEEeeeeccCCC--C-CCeeEEEcCCCc
Q psy535          163 QRKVGESVDMHCEAQEAEGT--Q-KPTITWQRRDGV  195 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~--p-~~~~~W~~~~~~  195 (460)
                      .+..++.++|.|.+   .|.  | ...++|.++++.
T Consensus        10 ~l~~~~~~tLtC~v---~gf~yP~~i~v~W~r~~~~   42 (96)
T cd07696          10 QLLLTKSVKLTCLV---TNLTSPEGVNVTWTRGSGE   42 (96)
T ss_pred             HhccCCCeEEEEEE---eCCCCCCCcEEEEEECCeE
Confidence            45678999999999   555  3 347899996543

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03042 CD47-like protein; Provisional

Probab=94.22  E-value=0.34  Score=40.25  Aligned_cols=61  Identities=20%  Similarity=0.376  Sum_probs=39.7

Q ss_pred             eeeEEEEEEEecCC----CCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           71 RLQGVVQCHIKANP----TFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        71 g~~~~l~C~~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      ++++.+.|.+...-    ....+.|..++..+-.....     +..+|.+.. ...-.|+|+|+|.+....
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----n~aSL~~~f-~~~l~GNYTCEv~~l~n~   95 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-----NTSSLKFNF-SKNLSGNYTCEAINKFNK   95 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----cceEEEEec-cccCCCceeEEEeecccC
Confidence            67899999985521    12369999999887532222     113466554 334489999999875543

>smart00407 IGc1 Immunoglobulin C-Type

Probab=94.12  E-value=0.24  Score=32.88  Aligned_cols=58  Identities=19%  Similarity=0.230  Sum_probs=31.8

Q ss_pred             EEEEeeeeccCCCCC-CeeEEEcCCCccCCccc---EEE-ecc------eEEEccccceeceEEEEEEecc
Q psy535          170 VDMHCEAQEAEGTQK-PTITWQRRDGVALPKNR---VKI-VGG------NITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~-~~~~W~~~~~~~~~~~~---~~~-~~~------~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      ++|.|.+.  .-.|. ..+.|++++........   ... .++      .|.+......+...|+|.+...
T Consensus         2 ~~L~C~a~--gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        2 ATLVCLVS--GFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             eEEEEEEE--eEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            68999994  33454 58999994432222111   011 122      2444333445567899988754

>PHA03273 envelope glycoprotein C; Provisional

Probab=93.99  E-value=4.7  Score=36.69  Aligned_cols=78  Identities=18%  Similarity=0.265  Sum_probs=59.8

Q ss_pred             EEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCC--CCeeEEEc
Q psy535          114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ--KPTITWQR  191 (460)
Q Consensus       114 l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p--~~~~~W~~  191 (460)
                      |.|..+...++|.|+=...+..+.......++|....+|.+.+.+..   +..|+.....|.+.  .-.|  ...+.|+.
T Consensus       200 LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P---vL~Ge~y~A~C~aa--~YYPp~Sv~~rWf~  274 (486)
T PHA03273        200 LTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP---SLKGENYRAVCVVA--SYFPHSSVKLRWYK  274 (486)
T ss_pred             eEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc---cccCCCceEEEEee--eecCCCceEEEEEe
Confidence            99999999999999877656555555567777777889998888764   57899999999984  2333  34899999


Q ss_pred             CCCcc
Q psy535          192 RDGVA  196 (460)
Q Consensus       192 ~~~~~  196 (460)
                      ++...
T Consensus       275 dg~~V  279 (486)
T PHA03273        275 NAKEV  279 (486)
T ss_pred             CCeec
Confidence            55533

>PHA03286 envelope glycoprotein E; Provisional

Probab=93.99  E-value=1.9  Score=38.84  Aligned_cols=76  Identities=12%  Similarity=-0.035  Sum_probs=50.3

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec-----CCeeE--------------EcceeeeecceeeEEEEE
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-----PAKVT--------------FTPTVQYLPFRLQGVVQC   78 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-----~p~~~--------------~~~~~~~~~~g~~~~l~C   78 (460)
                      ..|.|.+++.+++|.|+-...|..|......+.|.|..     +|.+.              ..+.......|+++.+.-
T Consensus       127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv  206 (492)
T PHA03286        127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV  206 (492)
T ss_pred             CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence            37999999999999999999988777666778888842     11111              123334456688886665


Q ss_pred             EEe-cC---CCCCeEEEee
Q psy535           79 HIK-AN---PTFQYVTWTK   93 (460)
Q Consensus        79 ~~~-~~---~~~~~v~W~~   93 (460)
                      ... ..   +-...+.|+.
T Consensus       207 ~l~~~~~d~~Fsl~i~W~y  225 (492)
T PHA03286        207 TAHLTNWAGAFSLEFRVLF  225 (492)
T ss_pred             EEeecccCCCceEEEEEEE
Confidence            543 11   1123588984

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=93.84  E-value=0.25  Score=31.78  Aligned_cols=28  Identities=25%  Similarity=0.415  Sum_probs=21.1

Q ss_pred             eEEECCCCcCceEEEEEEEeecCCCCCCC
Q psy535          424 QITINRLTPATTYEFQVVGKNELGDGMLS  452 (460)
Q Consensus       424 ~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s  452 (460)
                      .+.+.+|.|| .|.|+|+|.|..|.....
T Consensus        30 ~~~~~~L~~G-~Y~l~V~a~~~~~~~~~~   57 (66)
T PF07495_consen   30 SISYTNLPPG-KYTLEVRAKDNNGKWSSD   57 (66)
T ss_dssp             EEEEES--SE-EEEEEEEEEETTS-B-SS
T ss_pred             EEEEEeCCCE-EEEEEEEEECCCCCcCcc
Confidence            8889999988 999999999999875443

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=93.84  E-value=0.2  Score=35.64  Aligned_cols=29  Identities=14%  Similarity=0.396  Sum_probs=20.4

Q ss_pred             ccCCCCeEEEEeeeeccCCC-CC-CeeEEEcCCC
Q psy535          163 QRKVGESVDMHCEAQEAEGT-QK-PTITWQRRDG  194 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~-p~-~~~~W~~~~~  194 (460)
                      .+..+..++|.|.+   .|. |. ..+.|.+++.
T Consensus        12 ~~~~~~~~tL~C~a---~gFyP~~i~v~W~k~g~   42 (102)
T cd05768          12 ELSLQETATLTCLV---KGFSPSDIFVKWLQNGQ   42 (102)
T ss_pred             HhCcCCceEEEEEE---eeEeCCCCEEEEEECCE
Confidence            34457889999999   454 33 3789999543

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=93.81  E-value=0.34  Score=42.22  Aligned_cols=22  Identities=14%  Similarity=0.459  Sum_probs=18.6

Q ss_pred             eEEEEEEEecC-CCCCeEEEeeC
Q psy535           73 QGVVQCHIKAN-PTFQYVTWTKD   94 (460)
Q Consensus        73 ~~~l~C~~~~~-~~~~~v~W~~~   94 (460)
                      .++|+|.|.|. |....++|.|+
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999996 55567999999

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=93.81  E-value=0.42  Score=34.82  Aligned_cols=30  Identities=10%  Similarity=0.231  Sum_probs=20.7

Q ss_pred             ccCCCCeEEEEeeeeccCCCCC-CeeEEEcCCC
Q psy535          163 QRKVGESVDMHCEAQEAEGTQK-PTITWQRRDG  194 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~-~~~~W~~~~~  194 (460)
                      ....++.++|.|.+.  .-.|. ..+.|++++.
T Consensus        14 e~~~~~~~tL~Cla~--gFyP~~I~V~W~kng~   44 (115)
T cd05769          14 EIRNKRKATLVCLAT--GFYPDHVSLSWKVNGK   44 (115)
T ss_pred             HhccCCCcEEEEEEE--eEeCCCcEEEEEECCE
Confidence            344567799999994  33454 4899999543

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=93.73  E-value=4.2  Score=35.22  Aligned_cols=129  Identities=19%  Similarity=0.257  Sum_probs=64.9

Q ss_pred             CCceEEEccCccCccEEEEEEEEcCC-CCCCCCCcEEEEccCCCCCCCcceE-----EEeec--ce-EEEEecCCC--CC
Q psy535          300 GSTQITINRLTPATTYEFQVVGKNEL-GDGMLSNIVVVKTKGPKPGPPRNVS-----VTEVN--NG-FVISWQPPL--ER  368 (460)
Q Consensus       300 ~~~~~~i~~l~~~~~~~~~~~a~n~~-G~~~~s~~~~~~~~~~~P~~p~~~~-----~~~~~--~~-v~l~W~~~~--~~  368 (460)
                      ..+.++|.+|.|++.|.|.+.|.|.. |.+..-....+.+.+....+|..++     ....+  .. -..++..|.  ..
T Consensus        13 ~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~~~~   92 (300)
T PF10179_consen   13 QKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKRSST   92 (300)
T ss_pred             CCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCcCCCC
Confidence            45789999999999999999999985 3222211222333222233333322     11222  12 344555442  10


Q ss_pred             CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCC
Q psy535          369 ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG  447 (460)
Q Consensus       369 ~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G  447 (460)
                      ...+ .+.|.-+ .|.               ..++...+|..-...  ....+-..+.+.++.|+..|.+++.+.|...
T Consensus        93 ~~~~-~l~v~~C-~G~---------------V~v~i~r~gk~l~~~--~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e  152 (300)
T PF10179_consen   93 HQSL-WLFVQSC-SGS---------------VRVEISRNGKILLSQ--KNVEGLRHFRLSGVKPGERYLIRIQISNSDE  152 (300)
T ss_pred             CccE-EEEEEeC-CCe---------------EEEEEEECCeEEeee--ecccceEEEEECCCCCCCeEEEEEEccCCCC
Confidence            1111 1111111 111               111111122221111  1123567899999999999999998877543

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>COG4733 Phage-related protein, tail component [Function unknown]

Probab=93.48  E-value=1.7  Score=42.60  Aligned_cols=125  Identities=10%  Similarity=0.012  Sum_probs=68.1

Q ss_pred             CCceEEEccCccCccEEEEEEEEcCCCCCCCC---CcEEEEccCCCCCCCcceEEEeecceEEEEecCCCCCCccceEEE
Q psy535          300 GSTQITINRLTPATTYEFQVVGKNELGDGMLS---NIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYL  376 (460)
Q Consensus       300 ~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s---~~~~~~~~~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~  376 (460)
                      ....+.+.++.+ -.|..+++|.|..|....-   ....+..+..+|..+..+......-.+.+.|--|.. .-.+..-.
T Consensus       658 ~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~it~~~~l~v~dPt~-~~d~~~se  735 (952)
T COG4733         658 SAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVIITLVIRLVVGDPTG-AVDITSTE  735 (952)
T ss_pred             cccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEEEeeeeEEEecCCc-ceEEeeee
Confidence            456688888877 7889999999999865332   233343333333333334444444567888876641 11233333


Q ss_pred             EEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCC
Q psy535          377 IKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGML  451 (460)
Q Consensus       377 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~  451 (460)
                      +++.....-..         ...+.     ..-..|           ...=.+|+++..|.|+++++|..|.+.+
T Consensus       736 i~~s~~~d~~~---------~Ar~L-----G~~~~~-----------~~~~~~i~~g~~~~F~~R~Vn~vG~~~~  785 (952)
T COG4733         736 IRSAVIADGNF---------QARSL-----GNLNYP-----------GLFSVGIQAGLTFWFRNRNVDLVGNNDK  785 (952)
T ss_pred             eeeeccccchh---------HHhhh-----hccccc-----------cccccCcCCCceEEEEeeeccccccccc
Confidence            33332111000         00000     000011           1111689999999999999999997644

>KOG4597|consensus

Probab=92.96  E-value=0.13  Score=46.06  Aligned_cols=83  Identities=16%  Similarity=0.183  Sum_probs=58.8

Q ss_pred             eeeeecceeeEEEEEEEecCCCCCeEEEee---CCeecC--cc-ccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTK---DKRLLE--PY-QTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~---~~~~~~--~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      ....+..+++..++|-+.|.+.+ .|+|.+   |+..+.  +. ...+..+.+...|.|-+....|+|.|+|.+.+..|.
T Consensus       204 a~w~vg~wetcS~tCg~~G~q~r-~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~  282 (560)
T KOG4597|consen  204 AEWFVGDWETCSSTCGVQGRQYR-VVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGF  282 (560)
T ss_pred             chhhcccchhhcccccccCCcCc-eeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccce
Confidence            33456678899999999998776 699987   333221  10 112333444456999999999999999999999888


Q ss_pred             cceeeEEEEE
Q psy535          138 QGSSGQMEVL  147 (460)
Q Consensus       138 ~~~~~~~~v~  147 (460)
                      ......+.+.
T Consensus       283 ~~rdv~c~s~  292 (560)
T KOG4597|consen  283 LRRDVPCSSV  292 (560)
T ss_pred             eeccceeeee
Confidence            7666555543

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=92.86  E-value=0.53  Score=32.87  Aligned_cols=27  Identities=19%  Similarity=0.432  Sum_probs=18.8

Q ss_pred             CCCCeEEEEeeeeccCC-CC-CCeeEEEcCCC
Q psy535          165 KVGESVDMHCEAQEAEG-TQ-KPTITWQRRDG  194 (460)
Q Consensus       165 ~~g~~~~l~C~~~~~~~-~p-~~~~~W~~~~~  194 (460)
                      ..+...+|.|.+   .| .| ...+.|.+++.
T Consensus        13 ~~~~~~tL~C~a---~gFyP~~I~v~W~~~g~   41 (94)
T cd05767          13 ELGEPNTLICFV---DNFFPPVLNVTWLKNGV   41 (94)
T ss_pred             cCCCCeEEEEEE---EEEECCcCEEEEEECCe
Confidence            345667999999   45 34 34889998544

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=92.73  E-value=1  Score=31.49  Aligned_cols=28  Identities=11%  Similarity=0.209  Sum_probs=20.0

Q ss_pred             CCCCeEEEEeeeeccCCCCCC-eeEEEcCCC
Q psy535          165 KVGESVDMHCEAQEAEGTQKP-TITWQRRDG  194 (460)
Q Consensus       165 ~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~  194 (460)
                      ..|..++|.|.+.  .-.|.. .+.|.+++.
T Consensus        12 ~~~~~~~L~C~~~--gFyP~~i~v~W~~~g~   40 (94)
T cd05766          12 SLSHPHLLVCHVW--GFYPPEITVKWFKNGQ   40 (94)
T ss_pred             cCCCCeEEEEEEe--eecCCCCEEEEEECCe
Confidence            4578899999994  234443 889999544

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=92.69  E-value=0.99  Score=39.78  Aligned_cols=117  Identities=16%  Similarity=0.319  Sum_probs=68.8

Q ss_pred             eeeeecceeeEEEEEEEec--CCCCCeEEEeeCCeecCcc---------------ccccEEE---------eecCeEEEe
Q psy535           64 TVQYLPFRLQGVVQCHIKA--NPTFQYVTWTKDKRLLEPY---------------QTKDIVV---------MQNGSLLFT  117 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~--~~~~~~v~W~~~~~~~~~~---------------~~~~~~~---------~~~~~l~i~  117 (460)
                      ....++.|..+.|.|....  +......+|+--|-++.|.               ....+.+         +..++|+|.
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            3345667999999998753  3444568999765544431               1111211         223579999


Q ss_pred             ecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCC-eEEEEeeeeccCC-CCCCeeEEEc
Q psy535          118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGE-SVDMHCEAQEAEG-TQKPTITWQR  191 (460)
Q Consensus       118 ~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~-~~~l~C~~~~~~~-~p~~~~~W~~  191 (460)
                      .++.+.+|-|.|+|..+.-..+...-+.|.  ..-.+.       ....|. .....|-+-  +. ..++++.|+-
T Consensus       352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~--d~V~f~-------W~~e~~n~T~V~Cyv~--sy~~kp~si~wkv  416 (500)
T PHA02914        352 KAHINNAGCYEAQAFMGKFKEECRHCFKVA--DHVFFK-------WNTEGDNETKVACYAA--QYDMQPFSILWKS  416 (500)
T ss_pred             eEEEEcCCceEEEEecCcchhhhhhheEec--cEEEEE-------EEeccCceEEEEEEEE--ecccCCceeEEEE
Confidence            999999999999998764443333333332  111111       112333 344678763  22 4556799987

>KOG3632|consensus

Probab=92.64  E-value=1.2  Score=44.29  Aligned_cols=136  Identities=23%  Similarity=0.293  Sum_probs=85.6

Q ss_pred             eeeeEEEEecCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccC
Q psy535          234 VQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPA  312 (460)
Q Consensus       234 ~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~  312 (460)
                      .....|.+....+..|..+.+ .....+..++|.+......+.      .|-+..+.     ......-..+++.+|.++
T Consensus       660 ~lrc~Llvgg~a~vvpsqlrv~n~tqtSa~itwvp~nsn~~Hv------iyln~eE~-----~ps~a~~y~ytf~~lrpg  728 (1335)
T KOG3632|consen  660 QLRCILLVGGAAPVVPSQLRVWNATQTSAMITWVPFNSNFLHV------IYLNAEEP-----RPSVAEMYNYTFMRLRPG  728 (1335)
T ss_pred             cceeeEeccccccccchhhhhhhhhchhhheeeeecCCCccee------eecCCccC-----CCchhhhhHHHHhccCCC
Confidence            344455565556667776654 556678899998754333321      22222211     111113456788899999


Q ss_pred             ccEEEEEEEEcC-CC--------CCCCCCcEEEEccC-CCCCCCcceEEEeec--ceEEEEecCCC------CCCccceE
Q psy535          313 TTYEFQVVGKNE-LG--------DGMLSNIVVVKTKG-PKPGPPRNVSVTEVN--NGFVISWQPPL------ERASLIQY  374 (460)
Q Consensus       313 ~~~~~~~~a~n~-~G--------~~~~s~~~~~~~~~-~~P~~p~~~~~~~~~--~~v~l~W~~~~------~~~~~i~~  374 (460)
                      +.|..++.|.-. .+        ++.....+.+++.. ++|.||.++++....  ..+.++|.++-      .++-.+++
T Consensus       729 t~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsag~sngv~vtg  808 (1335)
T KOG3632|consen  729 TDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTG  808 (1335)
T ss_pred             CccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccccccCceeeee
Confidence            999999988755 11        12233445565554 457899999998775  47999999973      22347889


Q ss_pred             EEEEEE
Q psy535          375 YLIKYR  380 (460)
Q Consensus       375 y~i~~~  380 (460)
                      |.|+..
T Consensus       809 Yavyad  814 (1335)
T KOG3632|consen  809 YAVYAD  814 (1335)
T ss_pred             eeeeeC
Confidence            999776

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=92.43  E-value=0.66  Score=32.28  Aligned_cols=62  Identities=18%  Similarity=0.287  Sum_probs=33.5

Q ss_pred             cCCCCeEEEEeeeeccCC-CC-CCeeEEEcCCCccCCcccEE----EecceEEE---ccccceeceEEEEEEecc
Q psy535          164 RKVGESVDMHCEAQEAEG-TQ-KPTITWQRRDGVALPKNRVK----IVGGNITI---EGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       164 ~~~g~~~~l~C~~~~~~~-~p-~~~~~W~~~~~~~~~~~~~~----~~~~~l~i---~~~~~~~~g~y~C~a~n~  229 (460)
                      +..|...+|.|.+   .| .| ...+.|.++ +..+......    ..++++.+   ..+...+...|.|.+...
T Consensus        12 ~~~g~~~~L~C~a---~gFyP~~i~v~W~~d-g~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          12 AENGKPNVLNCYV---TGFHPPDIEIRLLKN-GVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             CcCCCceEEEEEE---EEEeCCCCEEEEEEC-CEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            3456777999999   45 33 347899994 4443321100    11223222   223344556788887653

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=92.21  E-value=0.6  Score=32.83  Aligned_cols=29  Identities=24%  Similarity=0.571  Sum_probs=21.2

Q ss_pred             ccCCCCeEEEEeeeeccCC-C-C-CCeeEEEcCCC
Q psy535          163 QRKVGESVDMHCEAQEAEG-T-Q-KPTITWQRRDG  194 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~-~-p-~~~~~W~~~~~  194 (460)
                      ....+..++|.|.+.   + . | ...+.|.++++
T Consensus        15 ~l~~~~~atLtClV~---~f~~P~~i~V~W~~~g~   46 (99)
T cd04986          15 DLLLGSSASLTCTLS---GLRDPEGAVFTWTPSGG   46 (99)
T ss_pred             HhCcCCccEEEEEEe---ccCCCCCeEEEEEECCc
Confidence            345688899999994   4 3 3 35899998654

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03283 envelope glycoprotein E; Provisional

Probab=92.11  E-value=3.6  Score=38.07  Aligned_cols=37  Identities=19%  Similarity=0.209  Sum_probs=30.8

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF   55 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~   55 (460)
                      +.|.|.+++++++|.|+-..++..+ .....+.|.|..
T Consensus       134 ~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~  170 (542)
T PHA03283        134 SVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKK  170 (542)
T ss_pred             CeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecC
Confidence            3799999999999999999998766 446667788865

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=92.01  E-value=0.19  Score=37.00  Aligned_cols=77  Identities=14%  Similarity=0.237  Sum_probs=41.0

Q ss_pred             CCCCeEEEEeeeecc--CCCCCCeeEEEcCCCccCC--cc-c-E--------EE-----ecceEEEccccceeceEEEEE
Q psy535          165 KVGESVDMHCEAQEA--EGTQKPTITWQRRDGVALP--KN-R-V--------KI-----VGGNITIEGLRRVDFGYYECV  225 (460)
Q Consensus       165 ~~g~~~~l~C~~~~~--~~~p~~~~~W~~~~~~~~~--~~-~-~--------~~-----~~~~l~i~~~~~~~~g~y~C~  225 (460)
                      .=.+++.|.|.+...  ...+.-.+.|..++...+.  +. . .        .+     .+.+|.+.....- .|.|+|.
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe  103 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE  103 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence            447789999998421  1122346899985543321  00 0 0        01     0124666654433 7999999


Q ss_pred             EecccceeeeeeEEEEe
Q psy535          226 VSNEVATIVQAAQLVVE  242 (460)
Q Consensus       226 a~n~~g~~~~~~~l~v~  242 (460)
                      +.....+.+..+.|...
T Consensus       104 Vt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  104 VTELSREGETTIELKYR  120 (130)
T ss_dssp             EEETTEEEEEEEEEEE-
T ss_pred             EEecCCCceEEEEEEEE
Confidence            99887777777777653

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=92.00  E-value=1.2  Score=31.07  Aligned_cols=62  Identities=15%  Similarity=0.198  Sum_probs=33.6

Q ss_pred             CCCeEEEEeeeeccCCCCC-CeeEEEcCCCccCCccc-----EEEecce------EEEccccceeceEEEEEEeccc
Q psy535          166 VGESVDMHCEAQEAEGTQK-PTITWQRRDGVALPKNR-----VKIVGGN------ITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       166 ~g~~~~l~C~~~~~~~~p~-~~~~W~~~~~~~~~~~~-----~~~~~~~------l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      ....++|.|.+.  .-.|. ..+.|.+++. ......     ....+++      |.+..-...+...|.|.+....
T Consensus        13 ~~~~~~L~C~a~--gFyP~~I~vtW~~dg~-~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~   86 (94)
T cd05847          13 TSETIQLLCLIS--GYTPGTIEVEWLVDGQ-VATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG   86 (94)
T ss_pred             CCCCEEEEEEEE--eEECCCCEEEEEECCE-ECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence            456689999994  22444 5899998544 331111     1111222      3333222224568999987654

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=91.33  E-value=6.9  Score=31.83  Aligned_cols=96  Identities=17%  Similarity=0.290  Sum_probs=47.9

Q ss_pred             CeEEEeeCCeecCccccc-cEEEeecC------eEEEe-ecCCCCCeEEEEEEE-cCCCCcce--eeEEEEEeeCCCcee
Q psy535           87 QYVTWTKDKRLLEPYQTK-DIVVMQNG------SLLFT-RVNQNHQGRYTCTPY-NAHGTQGS--SGQMEVLVRKPPAFT  155 (460)
Q Consensus        87 ~~v~W~~~~~~~~~~~~~-~~~~~~~~------~l~i~-~~~~~d~G~y~C~~~-~~~g~~~~--~~~~~v~v~~~p~~~  155 (460)
                      ..+.|+.||.++.+.... ......+|      +|.+. +...+..-..+|.+. ........  ++.+.-.|..+|.+.
T Consensus         7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs   86 (211)
T PF02124_consen    7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS   86 (211)
T ss_pred             EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE
Confidence            368999999988753221 11222223      35552 223333456899874 33222222  233333455566555


Q ss_pred             eCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEEcCCC
Q psy535          156 IKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQRRDG  194 (460)
Q Consensus       156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~  194 (460)
                      +.      ...|   ...|.+   .--|.  ..+.|.-++.
T Consensus        87 v~------F~~g---~AVC~A---~CVP~~~v~l~W~v~d~  115 (211)
T PF02124_consen   87 VR------FEDG---YAVCTA---RCVPRGNVTLRWSVGDD  115 (211)
T ss_pred             EE------ecCC---EEEEEc---ceeeCCCeEEEEEECCc
Confidence            43      2222   234655   33332  5899997554

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]

Probab=91.18  E-value=4.1  Score=35.41  Aligned_cols=119  Identities=19%  Similarity=0.157  Sum_probs=65.6

Q ss_pred             ecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCC-CCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEE
Q psy535          257 TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPP-GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV  335 (460)
Q Consensus       257 ~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~  335 (460)
                      ....+.+-|.|..+-.  + ..|++....+... +........ -...+.-.++.....|.+.+.|.+..+.-..+....
T Consensus        82 ~~~~~~~~w~~~~d~~--~-~~Y~i~~~~gD~~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf~gV  157 (343)
T COG3401          82 RPKSVKVFWSPHPDVS--V-GKYIIQRQNGDGK-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFSFTGV  157 (343)
T ss_pred             CcceeeecccccCCCC--C-CeEEEEEecCchh-hhhhhHHHhccchhheecccccccceeeeEEeecccccceeeeeee
Confidence            3456899999754322  2 5788877665543 222221110 112344457888899999999998876544442222


Q ss_pred             EEccCCCCCCCcceEEEee-cceEEEEecCCCCCCccceEEEEEEEEcC
Q psy535          336 VKTKGPKPGPPRNVSVTEV-NNGFVISWQPPLERASLIQYYLIKYRTDG  383 (460)
Q Consensus       336 ~~~~~~~P~~p~~~~~~~~-~~~v~l~W~~~~~~~~~i~~y~i~~~~~~  383 (460)
                      -.+....|..-.+++++.. .+.+.|+|+.+...+    .|+|+-...+
T Consensus       158 E~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~~----yy~IY~~~~g  202 (343)
T COG3401         158 EATPKAEPKEITNVRVSFDLGNNIELSEDGSEAED----YYRIYASDSG  202 (343)
T ss_pred             ecccccCCceeeeeeeecCCCCcceeeccCccccc----eEEEeccCCc
Confidence            1111122222223333332 257999999875433    7888666554

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=90.99  E-value=0.36  Score=34.77  Aligned_cols=31  Identities=6%  Similarity=0.279  Sum_probs=25.5

Q ss_pred             ccceEEEeeCC-----eEEEeecCCCCCeeEEEEEE
Q psy535            8 LETRVVIKKDG-----TLVINPVGSDDSGLYMCEVS   38 (460)
Q Consensus         8 ~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~   38 (460)
                      ..+|+++..+.     +|+|.+++.+|++.|.|...
T Consensus        59 ~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~e   94 (115)
T cd05721          59 SLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKIE   94 (115)
T ss_pred             cCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEee
Confidence            45777776663     89999999999999999763

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>KOG4152|consensus

Probab=90.52  E-value=0.23  Score=45.08  Aligned_cols=33  Identities=33%  Similarity=0.466  Sum_probs=30.4

Q ss_pred             ECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          427 INRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       427 i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      -..|.+|+.|+|||.|.|..|.|++|....++|
T Consensus       651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kT  683 (830)
T KOG4152|consen  651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKT  683 (830)
T ss_pred             ccccccccceeeeeeeeeccCCCchhhheeeee
Confidence            347999999999999999999999999998887

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=90.32  E-value=3.7  Score=27.59  Aligned_cols=36  Identities=8%  Similarity=0.052  Sum_probs=24.8

Q ss_pred             eEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEE
Q psy535           88 YVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        88 ~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  132 (460)
                      .+.|+..+..+.         .....+.......+|+|.++|.|.
T Consensus        28 ~~~l~~~~~k~~---------~~~~~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   28 SLFLENPGKKSL---------ETKKLVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             EEEEECSSCEEE---------EESSEEEEESBTCGGSEEEEEEEE
T ss_pred             hheeeccCcccc---------ccceEEEEecCCCCCCEEEEEEEc
Confidence            577776555432         223346667788899999999995

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA02982 hypothetical protein; Provisional

Probab=90.02  E-value=3.2  Score=33.20  Aligned_cols=84  Identities=10%  Similarity=0.258  Sum_probs=52.9

Q ss_pred             cccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecC-CeeEEcceeeeecceeeEEEEEEEec
Q psy535            7 SLETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP-AKVTFTPTVQYLPFRLQGVVQCHIKA   82 (460)
Q Consensus         7 ~~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~~~   82 (460)
                      ++.+.+.++-+|   +|.|.++..+..|-|+|.+..+.+....-...|.|+.. ..+.+.      .-...-.+.|-+..
T Consensus        86 ~~kd~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~W~------e~nNeT~V~CyVgS  159 (251)
T PHA02982         86 PYKDKYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDILYVVE------EHNNETIITCFVGS  159 (251)
T ss_pred             ccceeEEEEEeccceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecceEEEEEE------ecCCeEEEEEEEEe
Confidence            344556665554   99999999999999999999977654333556666322 122221      11223468898865


Q ss_pred             CCCCCeEEEeeCCee
Q psy535           83 NPTFQYVTWTKDKRL   97 (460)
Q Consensus        83 ~~~~~~v~W~~~~~~   97 (460)
                      ...+ -..|.-+|..
T Consensus       160 ~~~d-vp~W~V~GVv  173 (251)
T PHA02982        160 KHGD-VPRFIVAGIV  173 (251)
T ss_pred             ccCC-CccEEEeeEE
Confidence            4433 1388877653

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=89.62  E-value=22  Score=34.87  Aligned_cols=369  Identities=14%  Similarity=0.142  Sum_probs=184.6

Q ss_pred             EeecCCCCCeeE--EEEEEeCCCCc---ceeeeEEEEe--cCCeeE-Ec-ceeeeecceeeEEEEEEEecCCCCCeEEEe
Q psy535           22 INPVGSDDSGLY--MCEVSNGIGEP---QAAQAYLNVE--FPAKVT-FT-PTVQYLPFRLQGVVQCHIKANPTFQYVTWT   92 (460)
Q Consensus        22 i~~~~~~d~G~Y--~C~~~~~~~~~---~~~~~~l~v~--~~p~~~-~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~   92 (460)
                      +-.-.+..+|.|  .|.|.+.....   .......+|.  .|+.+. +. ........|+.+.|.+.+.|+... .+.+.
T Consensus       247 ~~~y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~GG~~l-lYrf~  325 (667)
T PRK14081        247 IVSYKEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTVKPYKDIKIRNFTTDLSSPQLTDTDIELKAVAEGGKEL-LYRFI  325 (667)
T ss_pred             eEEEEeCCCccEEEEEEEeccCcccccccceEEEEEEecCCCcEEEEEEEcCCCCeecCceEEEEEEecCCCce-EEEEE
Confidence            334456788998  55565543221   1223333443  233331 11 112234568899999999987654 35544


Q ss_pred             eCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEE--cCCCC--cceeeEEEEEeeCC---Cc-ee--eCCCccc
Q psy535           93 KDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY--NAHGT--QGSSGQMEVLVRKP---PA-FT--IKPEAMY  162 (460)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~--~~~g~--~~~~~~~~v~v~~~---p~-~~--~~~~~~~  162 (460)
                      -.|..+...   ..  ..+..+..   .+..+|.|.-.+.  +....  -.....+...+...   |. +.  +.+... 
T Consensus       326 I~G~~~e~~---~Y--~~~n~~~w---~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~-  396 (667)
T PRK14081        326 IKGKESEDS---GY--IRNNIYTW---KPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGK-  396 (667)
T ss_pred             ECCcEEeec---cc--cccceEEE---eeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCC-
Confidence            455544211   11  12223433   3456899987654  33322  22344455555443   32 11  111112 


Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeE-EEcCCCccCCcccEEEecceEEEccccceeceEEEEEE--ecccce----eee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTIT-WQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVV--SNEVAT----IVQ  235 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~-W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a--~n~~g~----~~~  235 (460)
                      ....|+.+.+.|.+.  .+. ...+. |.+.++......... .+..+.   ..+..+|.|+..+  .+....    ...
T Consensus       397 ~~lvG~~i~i~v~a~--gg~-~~lY~f~ik~ng~~ve~~~Y~-~~~~~~---f~P~~~G~Y~IeV~vKdk~S~~~yD~~k  469 (667)
T PRK14081        397 HILKGEEIKIRVIAE--GGT-NLRYSFIIKKDGKEEEKIDYG-KNNWVN---FIPEEKGNYELEVRVKDKYSDKEYDAHT  469 (667)
T ss_pred             ceEeCCeEEEEEEec--CCC-eEEEEEEEEECCEEEEEeecc-cccEEE---EEECCCeeEEEEEEEecccCchhcccce
Confidence            456799999999984  343 33332 344455443321111 122233   3345578887654  443332    244


Q ss_pred             eeEEEEecCCCCCCCc-eee----eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCc
Q psy535          236 AAQLVVEGTQPHAPYN-ITG----VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLT  310 (460)
Q Consensus       236 ~~~l~v~~~~p~~p~~-~~~----~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  310 (460)
                      .+.+.|....|..-.. +..    ...+..++++...  .++......    |.....+.|.....- .....+.+.   
T Consensus       470 ~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~--~~~k~v~y~----y~~~~NG~~v~~t~Y-s~~~~ysf~---  539 (667)
T PRK14081        470 IVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVII--QNTKDVLIK----YILKINGHKVEETDY-IKNKKYKFI---  539 (667)
T ss_pred             EEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEE--eCCCeEEEE----EEEEECCEEEEEeec-cccceEEEe---
Confidence            4556665544442221 111    1234455555542  333333223    332233445433321 134445544   


Q ss_pred             cCccEEEE--EEEEcCCCCCCCCCc--EEEEccCCCCCCCcceEEEeecc----eEEEEecCCCCCCccceEEEEEEEEc
Q psy535          311 PATTYEFQ--VVGKNELGDGMLSNI--VVVKTKGPKPGPPRNVSVTEVNN----GFVISWQPPLERASLIQYYLIKYRTD  382 (460)
Q Consensus       311 ~~~~~~~~--~~a~n~~G~~~~s~~--~~~~~~~~~P~~p~~~~~~~~~~----~v~l~W~~~~~~~~~i~~y~i~~~~~  382 (460)
                      |...|.|.  +.|.|....-.....  +.+...+  +.|+.+..+.....    .-.++|..-.. +|.-.-|+.+....
T Consensus       540 P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e--~~pi~nt~~~~~~~~~~~n~~~t~~~~~~-gg~~v~Yef~v~~~  616 (667)
T PRK14081        540 PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVRE--ALPITNTKIKTSKKKFKCNEEVTFSVKSE-GGKDVCYEFYIMEK  616 (667)
T ss_pred             ecCCceEEEEEEEcccccccccccceEEEEEEcC--CCCceeeEEEeecceEEcCCeEEEEEEcc-CCCcEEEEEEEEEC
Confidence            66666665  566777654333322  3333332  45666666554431    35777777666 44445899999999


Q ss_pred             CCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCC
Q psy535          383 GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG  449 (460)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s  449 (460)
                      |.|...+.=                            +....|++.-...| .|.+.|.+....+.-
T Consensus       617 g~w~~vq~y----------------------------s~k~~ysf~p~~~g-~Y~ilvl~ks~~~k~  654 (667)
T PRK14081        617 GEWKLVQKY----------------------------SRKNYYSFMPFNKG-KYKVLVLCKSYYKKC  654 (667)
T ss_pred             CcEEEEeec----------------------------cccCceEEEeccCC-cEEEEEEEecccccc
Confidence            988877641                            12334444444444 799988888776654

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=89.44  E-value=3  Score=28.69  Aligned_cols=63  Identities=14%  Similarity=0.412  Sum_probs=39.5

Q ss_pred             ccCCCCeEEEEeeeeccC--CCCCCeeEEEcCCCccCCcccEEEecc---eEEEccccceeceEEEEEE
Q psy535          163 QRKVGESVDMHCEAQEAE--GTQKPTITWQRRDGVALPKNRVKIVGG---NITIEGLRRVDFGYYECVV  226 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~--~~p~~~~~W~~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~g~y~C~a  226 (460)
                      .+..|+++++.|.+...-  ......+.|+.++. .++..+.+..+.   .+++.++.....-.|.|..
T Consensus        14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~-~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGE-KIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSC-ESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred             EEeCCCCEEEEEEEECCCCCCcccceEEEEECCE-ECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence            578899999999986321  13556899998555 777766665433   4666676666556677764

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=89.03  E-value=3.7  Score=29.24  Aligned_cols=80  Identities=26%  Similarity=0.496  Sum_probs=53.8

Q ss_pred             CCCCCCceeee-eecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccC-CCCce-----EEEc--cCccCccE
Q psy535          245 QPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP-PGSTQ-----ITIN--RLTPATTY  315 (460)
Q Consensus       245 ~p~~p~~~~~~-~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~i~--~l~~~~~~  315 (460)
                      +|..|.++.+. .....++.-|.++..++.+  ..|.+.|+..+ ..|....... .....     +.+.  ++.-...|
T Consensus         7 ~p~~P~~~~C~S~~~etftC~W~~g~~~~l~--~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y   83 (104)
T PF09067_consen    7 PPEKPENLKCFSREMETFTCFWEPGSEGNLP--TNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPY   83 (104)
T ss_dssp             HCCCCEEEEEEBSSSS-EEEEEEEESSSTST--CEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEE
T ss_pred             CCCCCccCccCCCCCCcEEEEeeCCCCCCCC--CcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEE
Confidence            56777777754 4456899999998776654  34888888766 5565554322 12223     5555  67788999


Q ss_pred             EEEEEEEcCCCC
Q psy535          316 EFQVVGKNELGD  327 (460)
Q Consensus       316 ~~~~~a~n~~G~  327 (460)
                      .++|.|.|..|.
T Consensus        84 ~i~V~a~~~~~~   95 (104)
T PF09067_consen   84 CIQVEATNALGS   95 (104)
T ss_dssp             EEEEEEEETTEE
T ss_pred             EEEEEeccCCCc
Confidence            999999999874

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=89.03  E-value=1.8  Score=30.28  Aligned_cols=30  Identities=7%  Similarity=0.077  Sum_probs=20.0

Q ss_pred             ccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCC
Q psy535          163 QRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDG  194 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~  194 (460)
                      ....+..++|.|.+.  .-.| ...+.|.+++.
T Consensus        12 e~~~~~~~tL~C~a~--gFyP~~I~v~W~kng~   42 (96)
T cd07697          12 EIEKQGQGIYLCLLE--NFFPDVIQVHWREGNS   42 (96)
T ss_pred             HHccCCCEEEEEEEE--EEeCCCeEEEEEECCE
Confidence            344567799999994  2234 34789999543

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PLN02533 probable purple acid phosphatase

Probab=88.13  E-value=6.5  Score=36.65  Aligned_cols=93  Identities=19%  Similarity=0.270  Sum_probs=51.2

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      .|..|..+.+.-.. +++.|+|.-..... +    .|+|-.... -.....+    ...+|.      ..     ..-.+
T Consensus        40 ~~~~P~qvhls~~~~~~m~V~W~T~~~~~-~----~V~yG~~~~~l~~~a~g----~~~~~~------~~-----~~~~~   99 (427)
T PLN02533         40 DPTHPDQVHISLVGPDKMRISWITQDSIP-P----SVVYGTVSGKYEGSANG----TSSSYH------YL-----LIYRS   99 (427)
T ss_pred             CCCCCceEEEEEcCCCeEEEEEECCCCCC-C----EEEEecCCCCCcceEEE----EEEEEe------cc-----ccccC
Confidence            36678888887655 68999999775422 2    255543221 0000000    001110      00     00112


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      .......|.+|+|++.|.+||-      ....|+...|+|.
T Consensus       100 g~iH~v~l~~L~p~T~Y~Yrvg------~~~~s~~~~F~T~  134 (427)
T PLN02533        100 GQINDVVIGPLKPNTVYYYKCG------GPSSTQEFSFRTP  134 (427)
T ss_pred             CeEEEEEeCCCCCCCEEEEEEC------CCCCccceEEECC
Confidence            3345788999999999999983      2234666777773

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=87.53  E-value=1.6  Score=29.97  Aligned_cols=68  Identities=13%  Similarity=0.306  Sum_probs=40.9

Q ss_pred             EcceeeeecceeeEEEEEEEecC----CCCCeEEEeeCCeecCccccccEEEeecC--eEEEeecCCCCCeEEEEEE
Q psy535           61 FTPTVQYLPFRLQGVVQCHIKAN----PTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~~~~~----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C~~  131 (460)
                      +.|....+..|.+++..|.....    .....|.|..++..+..   .++....++  ++++.+.....+-.|-|..
T Consensus         8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~---~qy~~in~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen    8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG---SQYRVINDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC---GCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred             EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh---hHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence            34555677889999999998533    13446999999986542   444444454  4566665555555566653

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=87.28  E-value=4.2  Score=28.43  Aligned_cols=26  Identities=31%  Similarity=0.546  Sum_probs=18.6

Q ss_pred             CCCeEEEEeeeeccCCC-C-CCeeEEEcCCC
Q psy535          166 VGESVDMHCEAQEAEGT-Q-KPTITWQRRDG  194 (460)
Q Consensus       166 ~g~~~~l~C~~~~~~~~-p-~~~~~W~~~~~  194 (460)
                      .++.++|.|.+   .+. | ...+.|.+++.
T Consensus        15 ~~~~~~L~C~a---~gFyP~~i~vtW~k~g~   42 (95)
T cd04985          15 SSDSVTLGCLA---TGFLPEPVTFTWNSGSN   42 (95)
T ss_pred             CCCcEEEEEEE---eeEECCCcEEEEeECCE
Confidence            46678999999   453 3 34789999554

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03042 CD47-like protein; Provisional

Probab=87.25  E-value=2.2  Score=35.67  Aligned_cols=71  Identities=17%  Similarity=0.285  Sum_probs=41.4

Q ss_pred             CCeEEEEeeeecc--CCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEE
Q psy535          167 GESVDMHCEAQEA--EGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV  240 (460)
Q Consensus       167 g~~~~l~C~~~~~--~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~  240 (460)
                      .+++.+.|.+.+-  .....-.+.|..++...+.....  ..++|.+.. ...-.|+|+|.+.+...+.....++.
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeLk  103 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIELQ  103 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEec-cccCCCceeEEEeecccCccEEEEEE
Confidence            5788999998421  11134579999865544322221  223455443 33347999999987665555555443

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=86.89  E-value=1.9  Score=29.24  Aligned_cols=28  Identities=29%  Similarity=0.513  Sum_probs=20.0

Q ss_pred             CCCCeEEEEeeeeccCCCCCC-eeEEEcCCC
Q psy535          165 KVGESVDMHCEAQEAEGTQKP-TITWQRRDG  194 (460)
Q Consensus       165 ~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~  194 (460)
                      ..+..++|.|.+.  .-.|.. .+.|.+++.
T Consensus         6 ~~~~~~~L~C~v~--~f~P~~i~v~W~~~~~   34 (83)
T PF07654_consen    6 ELGGSVTLTCLVS--GFYPKDITVTWLKNGK   34 (83)
T ss_dssp             HSTSEEEEEEEEE--EEBSSTEEEEEEETTE
T ss_pred             cCCCCEEEEEEEE--EEECCCcEEEEEeccc
Confidence            3488999999994  334433 799998544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>PHA03282 envelope glycoprotein E; Provisional

Probab=86.79  E-value=1.8  Score=39.20  Aligned_cols=45  Identities=33%  Similarity=0.507  Sum_probs=33.7

Q ss_pred             cceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEe
Q psy535            9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVE   54 (460)
Q Consensus         9 ~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~   54 (460)
                      ++|+.+ .|++|.|.+++++|+|.|+..+....... ....++|.|.
T Consensus       116 ~~rvs~-~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~  161 (540)
T PHA03282        116 PPRVAV-VNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG  161 (540)
T ss_pred             CcceeE-ecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence            678888 48899999999999999999986554433 2333556664

>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]

Probab=85.81  E-value=24  Score=30.99  Aligned_cols=193  Identities=16%  Similarity=0.058  Sum_probs=96.8

Q ss_pred             ceEEEEEEecccceeeeeeEEEEecCCCCCCCcee----eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeee
Q psy535          219 FGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNIT----GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI  294 (460)
Q Consensus       219 ~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~----~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (460)
                      ...|...+.+..+..+.++.. |...+-..|....    .......+.|+|.-+...     ..|.+.-.+.+.......
T Consensus       136 ~~~~~Iia~~f~~~~sfsf~g-VE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~-----~yy~IY~~~~g~e~~~~i  209 (343)
T COG3401         136 KYMELIIAADFQMGKSFSFTG-VEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAE-----DYYRIYASDSGNEEYGFI  209 (343)
T ss_pred             ceeeeEEeecccccceeeeee-eecccccCCceeeeeeeecCCCCcceeeccCcccc-----ceEEEeccCCccccccce
Confidence            445666666655544444322 2222222232222    233455778888732111     134443333322222211


Q ss_pred             eccCCCCceEEEccCccCccEEEEEEEEc-CCCCCCCCCcEEEEccCCCCCCCcceEEEeecceEEEEecCCCCCCccce
Q psy535          295 PVTPPGSTQITINRLTPATTYEFQVVGKN-ELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQ  373 (460)
Q Consensus       295 ~~~~~~~~~~~i~~l~~~~~~~~~~~a~n-~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~  373 (460)
                      ...  ....+.-.-...+..+.|.+.+.. ..+++..+....+......|..|....-....+.+.|.|+......  ..
T Consensus       210 a~t--~~n~y~d~~eglga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt~~g~t~~~s~i~V~~E~~~~~~--av  285 (343)
T COG3401         210 AQT--TENSYYDVKEGLGAVEYYKVTTVDNTGFESDLPNEPTVGETGGRYEVPTIPGETTEASFIGVAAEQNQLRQ--AV  285 (343)
T ss_pred             eec--cccchhhhhhccCceeEEEEEEEcCCcceeccCCccccccccCCcccccCCCceeeeeeeeEEecccccce--ee
Confidence            111  223333333444667777777764 5556766766666555554554444444444456778888753311  22


Q ss_pred             EEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCC
Q psy535          374 YYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM  450 (460)
Q Consensus       374 ~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~  450 (460)
                      .|.++-..++.....                             .......+....+.++..|.+.|.+++..|.+.
T Consensus       286 ~ytvyr~~~g~~~~~-----------------------------f~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~  333 (343)
T COG3401         286 TYTVYRVEDGTPTKF-----------------------------FTITETDGQDNDMLTGVEYRYEVVAVDKAGLSS  333 (343)
T ss_pred             EEeeeeccCCCccee-----------------------------eeeeeccccchhhccccceeEEEEEeccccccc
Confidence            333322222211100                             012345566778889999999999999999753

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=85.79  E-value=1.8  Score=30.98  Aligned_cols=84  Identities=17%  Similarity=0.231  Sum_probs=45.7

Q ss_pred             eeeeeecceEEEEeecCCC----CCCC-------ceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEE
Q psy535          252 ITGVATEFSVTLEWLPGYS----GGPD-------LKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV  320 (460)
Q Consensus       252 ~~~~~~~~~~~l~w~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~  320 (460)
                      +........+.+.+.++..    ++..       ....|.+.+++.+.......  .......+.|.+|.++..|-+++.
T Consensus         8 v~v~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~--~~~~~~~~~l~~L~p~t~YCv~V~   85 (106)
T PF09294_consen    8 VNVSSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKE--IETKNSSVTLSDLKPGTNYCVSVQ   85 (106)
T ss_dssp             EEEEEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEE--EESSSEEEEEES--TTSEEEEEEE
T ss_pred             EEEEECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEE--EeecCCEEEEeCCCCCCCEEEEEE
Confidence            4455666777777775531    0000       01357777777665411111  222456679999999999999999


Q ss_pred             EEcCC--CCCCCCCcEEEE
Q psy535          321 GKNEL--GDGMLSNIVVVK  337 (460)
Q Consensus       321 a~n~~--G~~~~s~~~~~~  337 (460)
                      |....  -.|.+|....+.
T Consensus        86 ~~~~~~~~~s~~S~~~C~~  104 (106)
T PF09294_consen   86 AFSPSQNKNSQPSEPQCIT  104 (106)
T ss_dssp             EEECSSTEEEEEBSEEEEE
T ss_pred             EEeccCCCcCCCCCCEeEe
Confidence            83322  134445444443

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>KOG4228|consensus

Probab=85.23  E-value=7.5  Score=39.77  Aligned_cols=48  Identities=19%  Similarity=0.153  Sum_probs=31.7

Q ss_pred             EEEEEEecccceeeeeeEEEEecCCCCCCCceeeeeecceEEEEeecC
Q psy535          221 YYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPG  268 (460)
Q Consensus       221 ~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~~~~~~~~~l~w~~~  268 (460)
                      .|.|.+....+.......+.|...||.++..........++.+.|...
T Consensus         1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~   48 (1087)
T KOG4228|consen    1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTGSTATSWVQAELLG   48 (1087)
T ss_pred             CeeeeecccCCCccceEEEEecCCCCCCCCcccccccccceeehhhcc
Confidence            388999988888888888888776665554433333444566666543

>COG5475 Uncharacterized small protein [Function unknown]

Probab=82.64  E-value=4.5  Score=24.27  Aligned_cols=34  Identities=29%  Similarity=0.567  Sum_probs=25.9

Q ss_pred             ccceEEEeeCC-eEEEeecCCCCCeeEEEEEEeCCCC
Q psy535            8 LETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGE   43 (460)
Q Consensus         8 ~~~r~~~~~~~-~L~i~~~~~~d~G~Y~C~~~~~~~~   43 (460)
                      .++-.++.+.| .++|+..+.+  |.|.|...+..|.
T Consensus         7 tgdvV~lKsGGP~Mtvs~~ss~--Gmy~C~Wf~g~g~   41 (60)
T COG5475           7 TGDVVTLKSGGPRMTVSGYSSD--GMYECRWFDGYGV   41 (60)
T ss_pred             cCcEEEeecCCceEEEeccccC--CeEEEEEecCCCc
Confidence            34556776666 7888877754  9999999998874

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=82.10  E-value=9.8  Score=25.55  Aligned_cols=20  Identities=25%  Similarity=0.481  Sum_probs=17.5

Q ss_pred             eEEEeecCCCCCeeEEEEEE
Q psy535           19 TLVINPVGSDDSGLYMCEVS   38 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~   38 (460)
                      .+.....+.+|+|.+.|.|.
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEc
Confidence            56777888999999999995

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT

Probab=82.07  E-value=1.8  Score=40.68  Aligned_cols=263  Identities=14%  Similarity=0.184  Sum_probs=19.4

Q ss_pred             CeEEEeecCCCC-CeeEEEEEE--eCCCCcceeeeEEEEecCCe-eEEcc-eeeeecceeeEEEEEEEecCCC------C
Q psy535           18 GTLVINPVGSDD-SGLYMCEVS--NGIGEPQAAQAYLNVEFPAK-VTFTP-TVQYLPFRLQGVVQCHIKANPT------F   86 (460)
Q Consensus        18 ~~L~i~~~~~~d-~G~Y~C~~~--~~~~~~~~~~~~l~v~~~p~-~~~~~-~~~~~~~g~~~~l~C~~~~~~~------~   86 (460)
                      ..|.|.+..+.- .-.|...+.  +..+......+.|.|...|. ..+.- ....+..++.+.|.....-.|.      .
T Consensus        38 ~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~  117 (440)
T PF02010_consen   38 PQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSG  117 (440)
T ss_dssp             SECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE----------------------------------------
T ss_pred             eEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEeeccceeEEcCCccceeecCceEEEeeEEEecccccccCCc
Confidence            378888877632 234566666  22232335556666654332 22221 2233333456777764432221      2


Q ss_pred             CeEEEeeCCeecC-----ccccccEEEeecCeEEEeecCCCCCeEEE--EEEEcCCC-CcceeeEEEEEeeCCCceeeCC
Q psy535           87 QYVTWTKDKRLLE-----PYQTKDIVVMQNGSLLFTRVNQNHQGRYT--CTPYNAHG-TQGSSGQMEVLVRKPPAFTIKP  158 (460)
Q Consensus        87 ~~v~W~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~--C~~~~~~g-~~~~~~~~~v~v~~~p~~~~~~  158 (460)
                      ..+.|.-....-.     ..............|.|......-...|.  ..+....+ .......+.+.-..+|.+.+..
T Consensus       118 l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~  197 (440)
T PF02010_consen  118 LTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISC  197 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEcc
Confidence            3577876332211     00001111123345666443332222254  44444333 2223333333333455554443


Q ss_pred             Ccc--cccCCCCeEEEEeeeeccC-CCCCCeeEEEc-----CC--CccCC---cc-cEEEecceEEEcc--ccceeceEE
Q psy535          159 EAM--YQRKVGESVDMHCEAQEAE-GTQKPTITWQR-----RD--GVALP---KN-RVKIVGGNITIEG--LRRVDFGYY  222 (460)
Q Consensus       159 ~~~--~~~~~g~~~~l~C~~~~~~-~~p~~~~~W~~-----~~--~~~~~---~~-~~~~~~~~l~i~~--~~~~~~g~y  222 (460)
                      ...  ..+..++.+.|...+.... ......+.|..     ..  ...+.   .. ........|.|..  +.....+.+
T Consensus       198 ~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~  277 (440)
T PF02010_consen  198 VSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTF  277 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeecccccccccccccccccccccccccccccccccccccccccc
Confidence            221  1266677777665553111 03345778876     00  00000   00 0011122455553  344445566


Q ss_pred             EEEEeccccee-eeeeEEEEecCCCCC-CCcee---eeeecceEEEEeecCCCCCCCceeeEEEEE
Q psy535          223 ECVVSNEVATI-VQAAQLVVEGTQPHA-PYNIT---GVATEFSVTLEWLPGYSGGPDLKQNYVIWY  283 (460)
Q Consensus       223 ~C~a~n~~g~~-~~~~~l~v~~~~p~~-p~~~~---~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~  283 (460)
                      ++.+.+..+.. .++..+.+.. +|.. ...+.   +......++++|.-..+... | ..|.+.+
T Consensus       278 ~l~v~~~~~~~~~a~~~~~~n~-pP~~g~c~v~P~~G~al~T~Ft~~c~~~~d~~~-p-L~Y~f~~  340 (440)
T PF02010_consen  278 RLTVTDSSGSSGSASISFTVNA-PPSGGSCSVSPSSGYALETTFTITCSGWTDDDQ-P-LTYQFYY  340 (440)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc-c-ccccccc
Confidence            66777665543 4555555543 2321 11111   22334566777763333333 3 4666666

The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=81.95  E-value=1.1  Score=41.40  Aligned_cols=38  Identities=29%  Similarity=0.373  Sum_probs=0.0

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF   55 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~   55 (460)
                      |.|.|.+++++|+|.|+-...+..+......+.|.|..
T Consensus        89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~  126 (439)
T PF02480_consen   89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG  126 (439)
T ss_dssp             --------------------------------------
T ss_pred             CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence            57999999999999999999987776656667777764

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PHA03271 envelope glycoprotein C; Provisional

Probab=81.91  E-value=40  Score=30.59  Aligned_cols=77  Identities=10%  Similarity=0.200  Sum_probs=53.8

Q ss_pred             eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe-eCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEE
Q psy535          113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV-RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITW  189 (460)
Q Consensus       113 ~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v-~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W  189 (460)
                      .|.|.++...|+|.|+-...+..........+.+.+ +.||.+.+.+..   +..|+.....|.+.  .-.|+  ..++|
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~P---VL~Ge~YkAtC~vA--nYYPP~SvrlrW  282 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPP---VLSGENYKASCIVR--HFYPPGSVYVSW  282 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCc---cccCCCceEEEEee--eecCCCceEEEE
Confidence            499999999999977666665544443444444444 467778777764   57899999999994  23333  38999


Q ss_pred             EcCCC
Q psy535          190 QRRDG  194 (460)
Q Consensus       190 ~~~~~  194 (460)
                      +.++.
T Consensus       283 f~nG~  287 (490)
T PHA03271        283 RQNGN  287 (490)
T ss_pred             EeCCc
Confidence            99544

>KOG4597|consensus

Probab=81.08  E-value=3.8  Score=37.27  Aligned_cols=77  Identities=14%  Similarity=0.165  Sum_probs=56.4

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcC--CCccC-Ccc------cEEEecceEEEccccceeceEEEEEEeccccee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRR--DGVAL-PKN------RVKIVGGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~--~~~~~-~~~------~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      .+..++...++|-+   .|.+.+.+.|.+.  +...+ ...      -.......|.|-+-...++|.|+|.+.+..|-.
T Consensus       207 ~vg~wetcS~tCg~---~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~  283 (560)
T KOG4597|consen  207 FVGDWETCSSTCGV---QGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL  283 (560)
T ss_pred             hcccchhhcccccc---cCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence            46678899999998   7999999999863  11111 001      111234468899999999999999999999988


Q ss_pred             eeeeEEEEe
Q psy535          234 VQAAQLVVE  242 (460)
Q Consensus       234 ~~~~~l~v~  242 (460)
                      ...+.+.+.
T Consensus       284 ~rdv~c~s~  292 (560)
T KOG4597|consen  284 RRDVPCSSV  292 (560)
T ss_pred             eccceeeee
Confidence            887776654

>TIGR00868 hCaCC calcium-activated chloride channel protein 1

Probab=80.71  E-value=73  Score=32.79  Aligned_cols=95  Identities=14%  Similarity=0.252  Sum_probs=55.4

Q ss_pred             CCCCCcceEEEeecceEEEEecCCCC--CCccceEEEEEEEEcC-----CeeeeccccCCCCcccccccceecCceeeee
Q psy535          342 KPGPPRNVSVTEVNNGFVISWQPPLE--RASLIQYYLIKYRTDG-----SWKTLNKGQIRPEENSYLGEYREQGNKDWLP  414 (460)
Q Consensus       342 ~P~~p~~~~~~~~~~~v~l~W~~~~~--~~~~i~~y~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (460)
                      +|....+|++......|.|+|+.|.+  ..+...+|.|+|...-     .+.....  +   .++-             .
T Consensus       755 PP~rItDL~~~~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~--v---n~~~-------------~  816 (863)
T TIGR00868       755 PPSKITDLEAGFQGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQ--V---NTTD-------------L  816 (863)
T ss_pred             CCccceeeEEeecCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccc--c---ccCC-------------c
Confidence            34555556665445679999999976  3677899999997531     1111110  0   0000             0


Q ss_pred             eccCCCCcceEEEC--C--CCcCceEEEEEEEeecCCC-CCCCce
Q psy535          415 IPVTPPGSTQITIN--R--LTPATTYEFQVVGKNELGD-GMLSNI  454 (460)
Q Consensus       415 ~~~~~~~~~~~~i~--~--L~p~~~Y~~~v~a~n~~G~-s~~s~~  454 (460)
                      ++........|++.  +  ...++.|.|-|+|++..|- |+.|+.
T Consensus       817 ~P~~ags~e~~~f~~~~~~~~~~~~~~~ai~a~d~~~~~s~~sn~  861 (863)
T TIGR00868       817 IPKEANSKEVFVFKPEGIPIENGTDLFIAVQAIDKANLTSEVSNI  861 (863)
T ss_pred             CCCCCCceeEEEEeCCcccccCCeEEEEEEEEEcccccccccccc
Confidence            12222333333333  3  2357899999999999974 766653

distributions. found a row in 1A13.INFO that was not parsed out

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=80.59  E-value=11  Score=26.01  Aligned_cols=59  Identities=15%  Similarity=0.233  Sum_probs=34.5

Q ss_pred             EEEEEEEecCCCCCeEEEeeC--Cee-cC--ccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           74 GVVQCHIKANPTFQYVTWTKD--KRL-LE--PYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        74 ~~l~C~~~~~~~~~~v~W~~~--~~~-~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      +.-.|.+.+..+++.|+|.-+  |.. ..  ...+....+  .+.+.+......|.-..+|.+...
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV--~S~y~lVPs~~~~gk~lTCvV~h~   86 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTV--ISRYRLVPSREAHKQKLTCIVNYR   86 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEE--EEEEEEeECHHHcCCEeEEEEEec
Confidence            456899655545568999862  321 00  001111111  123666677888899999999764

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology

Probab=80.52  E-value=17  Score=25.54  Aligned_cols=84  Identities=19%  Similarity=0.196  Sum_probs=49.0

Q ss_pred             CcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc--
Q psy535          346 PRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS--  422 (460)
Q Consensus       346 p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  422 (460)
                      |.++...... +.+..+|.+... ..+-+.|.|+|+..........                      ..........  
T Consensus         2 ~~nlsC~~~~~~~m~CtW~~g~~-~~~~t~y~L~~~~~~~~~~~eC----------------------~~y~~~~~~~~g   58 (99)
T PF09240_consen    2 PQNLSCFIYNLEYMNCTWEPGKE-APPDTQYTLYYWYSPLEEEKEC----------------------PHYSKDSGTRIG   58 (99)
T ss_dssp             -EEEEEEEETTTEEEEEEECCTT-CSTTEEEEEEEEETTSSSEEEE----------------------SEEEESTSSEEE
T ss_pred             CeeCEEEEECCEEEEEEECCCCC-CCCcccEEEEEEcCCCCccccC----------------------CCccccCCceeE
Confidence            5677776665 689999998754 3355789999998652111111                      0000011112  


Q ss_pred             ceEEECCC--CcCceEEEEEEEeecCCCCCCC
Q psy535          423 TQITINRL--TPATTYEFQVVGKNELGDGMLS  452 (460)
Q Consensus       423 ~~~~i~~L--~p~~~Y~~~v~a~n~~G~s~~s  452 (460)
                      ..+.....  .....|.|.|.+.|..|.-.+.
T Consensus        59 C~~~~~~~~~~~~~~~~v~V~~ss~~~~i~~~   90 (99)
T PF09240_consen   59 CQFPVSEIDSSEFSQYNVCVNGSSSAGSIRSS   90 (99)
T ss_dssp             EEEESCTT-TTTTSEEEEEEEEEETTEEEECE
T ss_pred             EEecCCCccccccceEEEEEEeccCCCccCCc
Confidence            23444444  2345899999999998865444

They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	460
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		1e-18
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		1e-13
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		4e-12
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		2e-10
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		8e-10
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		2e-09
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		1e-07
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		3e-09
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		3e-06
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		5e-09
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		2e-06
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		5e-09
3kld_A	384	Ptprg Cntn4 Complex Length = 384		5e-09
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		4e-08
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		8e-08
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		4e-08
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		2e-07
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		4e-07
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		7e-07
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		7e-07
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		8e-07
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		9e-07
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		1e-06
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		1e-06
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		2e-06
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		2e-06
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		2e-06
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		8e-06
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-05
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		1e-05
3o4o_C	339	Crystal Structure Of An Interleukin-1 Receptor Comp		5e-05
3lpw_A	197	Crystal Structure Of The Fniii-Tandem A77-A78 From		7e-05
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		1e-04
2ed7_A	119	Solution Structure Of The First Fibronectin Type Ii		2e-04
2ed7_A	119	Solution Structure Of The First Fibronectin Type Ii		3e-04
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-04
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-04
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		4e-04
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		5e-04

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 27/246 (10%)
Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
           ++RVV+   G L I+ +   DSG+Y C   N       A      E   ++   P +   
Sbjct: 168 DSRVVVLPSGALQISRLQPGDSGVYRCSARN------PASTRTGNEAEVRILSDPGLHRQ 221
Query: 69  PFRLQ------------GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLF 116
            + LQ             V++C +   P   + TW + + +++  ++K   ++   +LL 
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSF-TWLRGEEVIQ-LRSKKYSLLGGSNLLI 279
Query: 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEA 176
           + V  +  G YTC     +    +S ++ VLV  PP F   P  +Y     ES+D+  E 
Sbjct: 280 SNVTDDDSGTYTCVVTYKNENISASAELTVLV--PPWFLNHPSNLYAY---ESMDIEFEC 334
Query: 177 QEAEGTQKPTITWQRRDGVALPKNRVKIVGG-NITIEGLRRVDFGYYECVVSNEVATIVQ 235
               G   PT+ W +   V +P +  +IVGG N+ I G+ + D G+Y+CV  NE      
Sbjct: 335 A-VSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQS 393
Query: 236 AAQLVV 241
           +AQL+V
Sbjct: 394 SAQLIV 399

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 141/328 (42%), Gaps = 31/328 (9%)
Query: 13  VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
           +++   TL +  V   D+G Y C  SN  G+  +  A L V+ P +  F   ++  P R+
Sbjct: 248 LVENTATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPR--FIKKLE--PSRI 302
Query: 73  -----QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL-FTRVNQNHQGR 126
                    +C I  +P  + V W KD+  ++      +  +++ ++L    ++    G 
Sbjct: 303 VKQDEHTRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 361
Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
           YTC  +NA G+  SS  ++  V++PP F  KP  +   K G  V + CE Q   GT    
Sbjct: 362 YTCEAHNAAGSASSSTSLK--VKEPPVFRKKPHPVETLK-GADVHLECELQ---GTPPFQ 415
Query: 187 ITWQRRDGVALPKNRVKIVGGN----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           ++W +         + KI+  N    I I  +   D G Y+C  SN+V +      + ++
Sbjct: 416 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475
Query: 243 GTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG----NKDWLPIPVTP 298
              P     ++ ++T     ++      G   +    V W++++G      D + I  + 
Sbjct: 476 AP-PRFVKKLSDISTVVGEEVQLQATIEGAEPIS---VAWFKDKGEIVRESDNIWISYSE 531
Query: 299 PGSTQITINRLTPATTYEFQVVGKNELG 326
             +T +  +R  PA   ++    KNE G
Sbjct: 532 NIAT-LQFSRAEPANAGKYTCQIKNEAG 558

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 98/236 (41%), Gaps = 25/236 (10%)
Query: 18  GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQ 77
           GTL+I     +DSG Y+C V+N +G  ++ +  L V  P      P  Q + F    V  
Sbjct: 306 GTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 364
Query: 78  CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137
           C    NP  + V+W KD + +   ++          L    V +  +G Y C   N   +
Sbjct: 365 CQYTGNP-IKTVSWMKDGKAIGHSES---------VLRIESVKKEDKGMYQCFVRNDRES 414
Query: 138 QGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL 197
             +S ++++  R  P    +       + G SV + C A    G   P I+W+  DG  +
Sbjct: 415 AEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAG---GNPTPEISWE-LDGKKI 470
Query: 198 PKNRVKIVGGNITIEG----------LRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
             N    VG  +T+ G          +   D G Y+C+  ++V     +A+L V G
Sbjct: 471 ANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG 526

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 101/244 (41%), Gaps = 23/244 (9%)
Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQ----AYLNVEFPAKVTFTPTVQ 66
             V +  G L I    + D G Y C  ++ +     +     A LN+       F P+++
Sbjct: 150 HFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIK 209
Query: 67  -------YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV 119
                  Y     Q  ++C    NP  + + W K    L P  T     +Q  S+ F   
Sbjct: 210 ARFPAETYALVGQQVTLECFAFGNPVPR-IKWRKVDGSLSPQWTTAEPTLQIPSVSF--- 265
Query: 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEA 179
               +G Y C   N+ G     G+  ++V+  P + +K  +  +  +G ++   C A   
Sbjct: 266 --EDEGTYECEAENSKGRDTVQGR--IIVQAQPEW-LKVISDTEADIGSNLRWGCAAA-- 318
Query: 180 EGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239
            G  +PT+ W R       +NRV+++ G++    L   D G Y+CV  N+  TI  +A+L
Sbjct: 319 -GKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAEL 377
Query: 240 VVEG 243
            V+ 
Sbjct: 378 AVQA 381

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 135/349 (38%), Gaps = 49/349 (14%)
Query: 111 NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESV 170
           + SL    V  +  GRY C   +  G  G    M + +   P F I  + +Y    G  +
Sbjct: 62  SSSLHIKDVKLSDSGRYDCEAASRIG--GHQKSMYLDIEYAPKF-ISNQTIYYSWEGNPI 118
Query: 171 DMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKI----VGGNITIE--GLRRVDFGYYE 223
           ++ C+ +        +I W RRD + LP KN   +     G  + +E       DFG Y 
Sbjct: 119 NISCDVK---SNPPASIHW-RRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN 174
Query: 224 CVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWL----PGYSGGPDLKQNY 279
           C  +N + T  Q   L +    P +PY +  +  E S T   +    P   GG  +  +Y
Sbjct: 175 CTATNHIGTRFQEYILALADV-PSSPYGVKII--ELSQTTAKVSFNKPDSHGGVPI-HHY 230
Query: 280 VIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIXXXXXX 339
            +  +E  ++ W  I  +    T + +N L P TTYE +V   N  G G  S I      
Sbjct: 231 QVDVKEVASEIW-KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTL 289
Query: 340 XXXXXXXRNVS-VTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN 398
                   ++         F +S     +  + I  Y++KYR+            + +E+
Sbjct: 290 PVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRS------------KDKED 337
Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 447
            +L E + QGNKD             I +  L     YE Q+   N LG
Sbjct: 338 QWL-EKKVQGNKD------------HIILEHLQWTMGYEVQITAANRLG 373

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 8   LETRVVIKKDGTLV-INPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
            +TR  I+++G L+ I  V   D G+Y C  +NG+G    +   L V+   K+T  P   
Sbjct: 51  FDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINV 110
Query: 67  YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGR 126
            +   L+ V+ C    NP    V+W K    L   +   I V+++GSL    V +   G+
Sbjct: 111 KIIEGLKAVLPCTTMGNPK-PSVSWIKGDSALR--ENSRIAVLESGSLRIHNVQKEDAGQ 167
Query: 127 YTCTPYNAHGTQGS 140
           Y C   N+ GT  S
Sbjct: 168 YRCVAKNSLGTAYS 181

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 11/158 (6%)
Query: 78  CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL-FTRVNQNHQGRYTCTPYNA-H 135
           C +++ P  + ++WT++K L++ + T+   + +NG LL    V  +  G Y CT  N   
Sbjct: 29  CAVESYPQPE-ISWTRNKILIKLFDTR-YSIRENGQLLTILSVEDSDDGIYCCTANNGVG 86
Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
           G   S G ++V ++  P  T +P    +   G    + C      G  KP+++W + D  
Sbjct: 87  GAVESCGALQVKMK--PKIT-RPPINVKIIEGLKAVLPCTTM---GNPKPSVSWIKGDSA 140
Query: 196 ALPKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVAT 232
               +R+ ++  G++ I  +++ D G Y CV  N + T
Sbjct: 141 LRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGT 178

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 22/230 (9%)
Query: 13  VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
           +++   TL +  V   D+G Y C  SN  G+  +  A L V+ P +  F   ++  P R+
Sbjct: 56  LVENTATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQAPPR--FIKKLE--PSRI 110
Query: 73  -----QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL-FTRVNQNHQGR 126
                    +C I  +P  + V W KD+  ++      +  +++ ++L    ++    G 
Sbjct: 111 VKQDEHTRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 169
Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
           YTC  +NA G+  SS  ++  V++PP F  KP  +   K G  V + CE Q   GT    
Sbjct: 170 YTCEAHNAAGSASSSTSLK--VKEPPVFRKKPHPVETLK-GADVHLECELQ---GTPPFQ 223
Query: 187 ITWQRRDGVALPKNRVKIVGGN----ITIEGLRRVDFGYYECVVSNEVAT 232
           ++W +         + KI+  N    I I  +   D G Y+C  SN+V +
Sbjct: 224 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 104/286 (36%), Gaps = 33/286 (11%)
Query: 56  PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GSL 114
           P      P    L     G  +CH+      + +TW KD R + P     + +++N  +L
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 115 LFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHC 174
              +V +   G+YTC   N  G    S Q+   V+ PP F  K E     K  E     C
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLG--VQAPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 175 EAQEAEGTQKPTITWQRRDGV--ALPKNRVKIVGGNITIE--GLRRVDFGYYECVVSNEV 230
           +     G+ +  + W + +       K R+  V     +E   L   D G Y C   N  
Sbjct: 122 KIG---GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 231 ATIVQAAQLVVEG-----TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE 285
            +   +  L V+       +PH    + G        L+  P +          V W+++
Sbjct: 179 GSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQ---------VSWHKD 229
Query: 286 Q-----GNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 326
           +     G K  +   ++    T I I  +  A   E+Q    N++G
Sbjct: 230 KRELRSGKKYKI---MSENFLTSIHILNVDSADIGEYQCKASNDVG 272

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 22/230 (9%)
Query: 13  VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
           +++   TL +  V   D+G Y C  SN  G+  +  A L V+ P +  F   ++  P R+
Sbjct: 56  LVENTATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPR--FIKKLE--PSRI 110
Query: 73  -----QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL-FTRVNQNHQGR 126
                    +C I  +P  + V W KD+  ++      +  +++ ++L    ++    G 
Sbjct: 111 VKQDEHTRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 169
Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
           YTC  +NA G+  SS  ++  V++PP F  KP  +   K G  V + CE Q   GT    
Sbjct: 170 YTCEAHNAAGSASSSTSLK--VKEPPVFRKKPHPVETLK-GADVHLECELQ---GTPPFQ 223
Query: 187 ITWQRRDGVALPKNRVKIVGGN----ITIEGLRRVDFGYYECVVSNEVAT 232
           ++W +         + KI+  N    I I  +   D G Y+C  SN+V +
Sbjct: 224 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 105/286 (36%), Gaps = 33/286 (11%)
Query: 56  PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GSL 114
           P      P    L     G  +CH+      + +TW KD R + P     + +++N  +L
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 115 LFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHC 174
              +V +   G+YTC   N  G    S Q+   V++PP F  K E     K  E     C
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLG--VQEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 175 EAQEAEGTQKPTITWQRRDGV--ALPKNRVKIVGGNITIE--GLRRVDFGYYECVVSNEV 230
           +     G+ +  + W + +       K R+  V     +E   L   D G Y C   N  
Sbjct: 122 KIG---GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 231 ATIVQAAQLVVEG-----TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE 285
            +   +  L V+       +PH    + G        L+  P +          V W+++
Sbjct: 179 GSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQ---------VSWHKD 229
Query: 286 Q-----GNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 326
           +     G K  +   ++    T I I  +  A   E+Q    N++G
Sbjct: 230 KRELRSGKKYKI---MSENFLTSIHILNVDSADIGEYQCKASNDVG 272

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 131/328 (39%), Gaps = 35/328 (10%)
Query: 17  DGTLVIN-PVGSDDSGLYMCEVSNGIG-----EPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
           DG+L+IN P  + D+G Y C  +N  G     E +   AYL   F  +   T +V+    
Sbjct: 60  DGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLE-NFKTRTRSTVSVR---- 114
Query: 71  RLQG-VVQCHIKANPTFQYVTWTKDKRLLEPYQ-TKDIVVMQNGSLLFTRVNQNHQGRYT 128
           R QG V+ C    +       W  ++     YQ  +  V  + G+L   +V ++  G YT
Sbjct: 115 RGQGMVLLCGPPPHSGELSYAWIFNE--YPSYQDNRRFVSQETGNLYIAKVEKSDVGNYT 172
Query: 129 CTPYNAHGTQGSSGQMEVLVRK--------PPAFTIK-PEAMYQRKVGESVDMHCEAQEA 179
           C   N        G    L+ +         P   ++ PE +   K G +V + C A   
Sbjct: 173 CVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEK-GTTVKLECFAL-- 229
Query: 180 EGTQKPTITWQRRDGVALP-KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238
            G   PTI W+R DG  +  K R     G + I   ++ D G YECV  N     V   Q
Sbjct: 230 -GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQ 288
Query: 239 LVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP 298
           L     QP+    I  +      ++ W    +G P     ++        +D + I    
Sbjct: 289 LTFYA-QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI---E 344
Query: 299 PGSTQITINRLTPATTYEFQVVGKNELG 326
            G+  ITI  L+ A  Y  Q V +N+ G
Sbjct: 345 QGTLNITIVNLSDAGMY--QCVAENKHG 370

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 131/328 (39%), Gaps = 35/328 (10%)
Query: 17  DGTLVIN-PVGSDDSGLYMCEVSNGIG-----EPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
           DG+L+IN P  + D+G Y C  +N  G     E +   AYL   F  +   T +V+    
Sbjct: 61  DGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLE-NFKTRTRSTVSVR---- 115
Query: 71  RLQG-VVQCHIKANPTFQYVTWTKDKRLLEPYQ-TKDIVVMQNGSLLFTRVNQNHQGRYT 128
           R QG V+ C    +       W  ++     YQ  +  V  + G+L   +V ++  G YT
Sbjct: 116 RGQGMVLLCGPPPHSGELSYAWIFNE--YPSYQDNRRFVSQETGNLYIAKVEKSDVGNYT 173
Query: 129 CTPYNAHGTQGSSGQMEVLVRK--------PPAFTIK-PEAMYQRKVGESVDMHCEAQEA 179
           C   N        G    L+ +         P   ++ PE +   K G +V + C A   
Sbjct: 174 CVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEK-GTTVKLECFAL-- 230
Query: 180 EGTQKPTITWQRRDGVALP-KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238
            G   PTI W+R DG  +  K R     G + I   ++ D G YECV  N     V   Q
Sbjct: 231 -GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQ 289
Query: 239 LVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP 298
           L     QP+    I  +      ++ W    +G P     ++        +D + I    
Sbjct: 290 LTFYA-QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI---E 345
Query: 299 PGSTQITINRLTPATTYEFQVVGKNELG 326
            G+  ITI  L+ A  Y  Q V +N+ G
Sbjct: 346 QGTLNITIVNLSDAGMY--QCVAENKHG 371

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 7   SLETRVVIKK---DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
           SL+ R+ +K      +L I  V   DSG Y CE ++ IG  Q +  YL++E+  K     
Sbjct: 49  SLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSM-YLDIEYAPKFISNQ 107
Query: 64  TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV---N 120
           T+ Y        + C +K+NP    + W +DK +L    T ++     G  +   +   +
Sbjct: 108 TIYYSWEGNPINISCDVKSNPPAS-IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTS 166
Query: 121 QNHQGRYTCTPYNAHGTQ 138
            N  GRY CT  N  GT+
Sbjct: 167 DNDFGRYNCTATNHIGTR 184

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 97/234 (41%), Gaps = 23/234 (9%)
Query: 111 NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESV 170
           + SL    V  +  GRY C   +  G  G    M + +   P F I  + +Y    G  +
Sbjct: 62  SSSLHIKDVKLSDSGRYDCEAASRIG--GHQKSMYLDIEYAPKF-ISNQTIYYSWEGNPI 118
Query: 171 DMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKI----VGGNITIE--GLRRVDFGYYE 223
           ++ C+ +        +I W RRD + LP KN   +     G  + +E       DFG Y 
Sbjct: 119 NISCDVK---SNPPASIHW-RRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN 174
Query: 224 CVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWL----PGYSGGPDLKQNY 279
           C  +N + T  Q   L +    P +PY +  +  E S T   +    P   GG  +  +Y
Sbjct: 175 CTATNHIGTRFQEYILALADV-PSSPYGVKII--ELSQTTAKVSFNKPDSHGGVPI-HHY 230
Query: 280 VIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 333
            +  +E  ++ W  I  +    T + +N L P TTYE +V   N  G G  S I
Sbjct: 231 QVDVKEVASEIW-KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKI 283

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 106/234 (45%), Gaps = 28/234 (11%)
Query: 11  RVVIKKDGT---LVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
           RVV++K+G    L I     +D+G+Y C+ ++  G+ Q A   L  E   K+TF   V  
Sbjct: 50  RVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL--EIYQKLTFREVVSP 107
Query: 68  LPFRL--QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQG 125
             F+      V C + ++P    V+W      +         ++ N +L    +N++ +G
Sbjct: 108 QEFKQGEDAEVVCRVSSSPA-PAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEG 166
Query: 126 RYTCTPYNAHGTQGSSGQME-----VLVRKPPAFTIKPEAMYQRKV--GESVDMHCEAQE 178
            Y C      G   + G+++     V+V  PPA ++ P+  +      GE +   C A  
Sbjct: 167 IYRC-----EGRVEARGEIDFRDIIVIVNVPPAISM-PQKSFNATAERGEEMTFSCRAS- 219
Query: 179 AEGTQKPTITWQRRDGVALPKNRVKIVGGN---ITIEGLRRVDFGYYECVVSNE 229
             G+ +P I+W  R+G  + +N   I+ G+   +T+  +   D G Y C  +N+
Sbjct: 220 --GSPEPAISW-FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNK 270

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 99/251 (39%), Gaps = 37/251 (14%)
Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIG---------------EPQAAQAY---LN 52
           R V +  G L I    + D G Y C  ++ I                  + A+ Y   + 
Sbjct: 151 RFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIK 210
Query: 53  VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG 112
            +FPA  T+  T Q +       ++C    NP  Q + W K    L+  QT   +  +  
Sbjct: 211 AKFPAD-TYALTGQMV------TLECFAFGNPVPQ-IKWRK----LDGSQTSKWLSSEP- 257
Query: 113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDM 172
            L    V+   +G Y C   N  G     G++ ++  +P    +  +   +  +G  +  
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRI-IIHAQPDWLDVITDT--EADIGSDLRW 314
Query: 173 HCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT 232
            C A    G  +P + W R       +NR+++ GG +    L   D G Y+CV  N+  T
Sbjct: 315 SCVAS---GKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGT 371
Query: 233 IVQAAQLVVEG 243
           +  +A+L V+ 
Sbjct: 372 VYASAELTVQA 382

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 22/237 (9%)
Query: 1   MNTKVGSLETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-PAK 58
           +N +   +  R+ +  D  TL +  V  +D G Y C + N +    +    LNV + P  
Sbjct: 324 VNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDD 383
Query: 59  VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR 118
            T +P+  Y    +   + CH  +NP  QY +W  D  + +  Q           L  + 
Sbjct: 384 PTISPSYTYYRPGVNLSLSCHAASNPPAQY-SWLIDGNIQQHTQ----------ELFISN 432
Query: 119 VNQNHQGRYTCTPYN-AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ 177
           + + + G YTC   N A G   ++ +   +  + P  +I        +  ++V   CE  
Sbjct: 433 ITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEP- 491
Query: 178 EAEGTQKPTITWQRRDGVALPKN-RVKIVGGN--ITIEGLRRVDFGYYECVVSNEVA 231
           EA+ T   T  W   +G +LP + R+++  GN  +T+  + R D   Y C + N V+
Sbjct: 492 EAQNT---TYLWW-VNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVS 544

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 33/189 (17%)
Query: 76  VQCHIKANPTFQYVTWTKDKRLLEPYQTKDI----VVMQNGSLLFTRVNQNHQ----GRY 127
           + C ++  P    + W KD    EP  T +     V  ++G+L F R  Q  +    G Y
Sbjct: 29  LNCKVEGKPE-PTIEWFKDG---EPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY 84
Query: 128 TCTPYNAHG---TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184
            C   N  G   ++ +S Q+ VL      F ++P+     K GE+  + C     +G  +
Sbjct: 85  WCVAKNRVGQAVSRHASLQIAVLRDD---FRVEPKDTRVAK-GETALLECGP--PKGIPE 138
Query: 185 PTITWQRRDGVAL---------PKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIV 234
           PT+ W + DGV L           +RV+IV GGN+ I  +  +D G Y+C+  N V T  
Sbjct: 139 PTLIWIK-DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRE 197
Query: 235 QA-AQLVVE 242
            + A+L+V+
Sbjct: 198 SSYAKLIVQ 206

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 33/189 (17%)
Query: 76  VQCHIKANPTFQYVTWTKDKRLLEPYQTKDI----VVMQNGSLLFTRVNQNHQ----GRY 127
           + C ++  P    + W KD    EP  T +     V  ++G+L F R  Q  +    G Y
Sbjct: 29  LNCKVEGKPE-PTIEWFKDG---EPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY 84
Query: 128 TCTPYNAHG---TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184
            C   N  G   ++ +S Q+ VL      F ++P+     K GE+  + C     +G  +
Sbjct: 85  WCVAKNRVGQAVSRHASLQIAVLRDD---FRVEPKDTRVAK-GETALLECGP--PKGIPE 138
Query: 185 PTITWQRRDGVAL---------PKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIV 234
           PT+ W + DGV L           +RV+IV GGN+ I  +  +D G Y+C+  N V T  
Sbjct: 139 PTLIWIK-DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRE 197
Query: 235 QA-AQLVVE 242
            + A+L+V+
Sbjct: 198 SSYAKLIVQ 206

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 17/189 (8%)
Query: 54  EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQT---KDIVVMQ 110
           +FP ++   P+   +       + C  +  PT   + W K    +E  +       +++ 
Sbjct: 7   DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPT-PTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 111 NGSLLFTRVNQNHQGR-----YTCTPYNAHGTQGS-SGQMEVLVRKPPAFTIKPEAMYQR 164
           +GSL F R+    + R     Y C   N  G   S    +EV + +   F   P  +   
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRD-DFRQNPSDVMV- 123
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN--RVKIVGGNITIEGLRRVDFGYY 222
            VGE   M C  Q   G  +PTI+W ++DG  L     R+ I GG + I   R+ D G Y
Sbjct: 124 AVGEPAVMEC--QPPRGHPEPTISW-KKDGSPLDDKDERITIRGGKLMITYTRKSDAGKY 180
Query: 223 ECVVSNEVA 231
            CV +N V 
Sbjct: 181 VCVGTNMVG 189

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 18/224 (8%)
Query: 29  DSGLYMCEVSNGIGEPQAAQAYLNV----EFPA---KVTFTPTVQYLPFRLQGVVQCHIK 81
           D  +Y C   N +GE     A L V    + P+    +   P ++ +       + C   
Sbjct: 75  DENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAAS 133
Query: 82  ANPTFQYVTWTKDKRLLEPYQTKD-IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140
            NP  + +TW KD   ++P  +   I  +++G+L      +  QG+Y C   N+ G + S
Sbjct: 134 GNPDPE-ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYS 192
Query: 141 S-GQMEVLVRK-PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
           S   + V V+   P F+I P + ++   G +V++ C A    G+  P + W +      P
Sbjct: 193 SPANLYVRVQNVAPRFSILPMS-HEIMPGGNVNITCVAV---GSPMPYVKWMQGAEDLTP 248
Query: 199 KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           ++ +  VG N+ +E     D   Y CV  + +  I   AQ+ V+
Sbjct: 249 EDDMP-VGRNV-LELTDVKDSANYTCVAMSSLGVIEAVAQITVK 290

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 101/263 (38%), Gaps = 48/263 (18%)
Query: 15  KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG 74
           K   TLVI    ++ S LY CE  N +G  +   ++     P ++T  P +Q  P   + 
Sbjct: 512 KTVSTLVIQ--AANVSALYKCEAVNKVGRGERVISFHVTRGP-EITLQPDMQ--PTEQES 566
Query: 75  VVQCHIKANPTFQYVTWTK-----------------DKRL---------LEPYQTKDIVV 108
           V         TF+ +TW K                  K L         +    T DI++
Sbjct: 567 VSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626
Query: 109 MQ--NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS--GQMEVLVRKPPAFTIKPEAMYQR 164
           M+  N SL         QG Y C   +    +      Q+ VL R  P  T   E     
Sbjct: 627 MELKNASL-------QDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQ-TT 678
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN--ITIEGLRRVDFGYY 222
            +GES+++ C A    G   P I W + +   +  + + +  GN  +TI  +R+ D G Y
Sbjct: 679 SIGESIEVSCTAS---GNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLY 735
Query: 223 ECVVSNEVATIVQAAQLVVEGTQ 245
            C   + +      A  ++EG Q
Sbjct: 736 TCQACSVLGCAKVEAFFIIEGAQ 758

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 21/224 (9%)
Query: 18  GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF--TPTVQYLPFRLQGV 75
            TL I     DD+G+Y C V+   G    ++A +NV+   K+ F   PT Q        V
Sbjct: 62  STLTIYNANIDDAGIYKCVVTAEDG--TQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119
Query: 76  VQCHIKAN--PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133
           + C + ++  PT   + W    R +   +    +V+ N  L    + +  +G Y C    
Sbjct: 120 IVCDVVSSLPPT---IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRI 176
Query: 134 AHGTQGSSGQMEVLVRKPPAFTIKPEAM-YQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
               + +   ++V+V  PP    +   +     +G+SV + C   +A+G  +PT++W  +
Sbjct: 177 LARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVC---DADGFPEPTMSWT-K 232
Query: 193 DGVAL-------PKNRVKIVGGNITIEGLRRVDFGYYECVVSNE 229
           DG  +        K+        +TI  + + D   Y C+  N+
Sbjct: 233 DGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENK 276

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 11/129 (8%)
Query: 18  GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQ 77
           GTL+I     +DSG Y+C V+N +G  ++ +  L V  P      P  Q + F    V  
Sbjct: 273 GTLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 331
Query: 78  CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137
           C    NP  + V+W KD + +   ++          L    V +  +G Y C   N   +
Sbjct: 332 CQYTGNP-IKTVSWMKDGKAIGHSES---------VLRIESVKKEDKGMYQCFVRNDRES 381
Query: 138 QGSSGQMEV 146
             +S ++++
Sbjct: 382 AEASAELKL 390

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 11/129 (8%)
Query: 18  GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQ 77
           GTL+I     +DSG Y+C V+N +G  ++ +  L V  P      P  Q + F    V  
Sbjct: 270 GTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 328
Query: 78  CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137
           C    NP  + V+W KD + +   ++          L    V +  +G Y C   N   +
Sbjct: 329 CQYTGNP-IKTVSWMKDGKAIGHSES---------VLRIESVKKEDKGMYQCFVRNDRES 378
Query: 138 QGSSGQMEV 146
             +S ++++
Sbjct: 379 AEASAELKL 387

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 11/129 (8%)
Query: 18  GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQ 77
           GTL+I     +DSG Y+C V+N +G  ++ +  L V  P      P  Q + F    V  
Sbjct: 276 GTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 334
Query: 78  CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137
           C    NP  + V+W KD + +   ++          L    V +  +G Y C   N   +
Sbjct: 335 CQYTGNP-IKTVSWMKDGKAIGHSES---------VLRIESVKKEDKGMYQCFVRNDRES 384
Query: 138 QGSSGQMEV 146
             +S ++++
Sbjct: 385 AEASAELKL 393

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 16/174 (9%)
Query: 71  RLQGVVQ--CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGR-- 126
           R+ GV    C  + +P    V W K+ + +   Q++  V+ Q G +   R+     GR  
Sbjct: 21  RVGGVASFYCAARGDPPPSIV-WRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDD 79
Query: 127 --YTCTPYNAHGTQGSSGQMEVLV---RKPPAFTIKPEAMYQR--KVGESVDMHCEAQEA 179
             Y C   N  G   S+     +    + P  F +  +    R  +VG +V M C+A   
Sbjct: 80  APYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAI-- 137
Query: 180 EGTQKPTITW-QRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT 232
            G   P I W + +  V +   R  +  G + IE  R  D G YECV  N + T
Sbjct: 138 -GNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGT 190

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 16/174 (9%)
Query: 71  RLQGVVQ--CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGR-- 126
           R+ GV    C  + +P    V W K+ + +   Q++  V+ Q G +   R+     GR  
Sbjct: 19  RVGGVASFYCAARGDPPPSIV-WRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDD 77
Query: 127 --YTCTPYNAHGTQGSSGQMEVLV---RKPPAFTIKPEAMYQR--KVGESVDMHCEAQEA 179
             Y C   N  G   S+     +    + P  F +  +    R  +VG +V M C+A   
Sbjct: 78  APYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAI-- 135
Query: 180 EGTQKPTITW-QRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT 232
            G   P I W + +  V +   R  +  G + IE  R  D G YECV  N + T
Sbjct: 136 -GNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGT 188

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 92/245 (37%), Gaps = 24/245 (9%)
Query: 2   NTKVGSLETRVVIKKDGTLVINPVGSDDSG---LYMCEVSNGIGEPQAAQAYLNVEFPAK 58
           N  V   + R+    DG L    V  +D      Y+C   N   + +       ++   K
Sbjct: 145 NADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTK 204
Query: 59  ----VTFTPTVQYLPFRLQG------VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV 108
                   P  QY+   +        ++ C   +NP   Y  + K+ + +     +D + 
Sbjct: 205 DNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP-MGYPNYFKNGKDVNG-NPEDRIT 262
Query: 109 MQNGS----LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQR 164
             N +    LLF       +G YTC   N  G +     +++ V   P +  KPE +   
Sbjct: 263 RHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVG-KPQKHSLKLTVVSAPKYEQKPEKVIVV 321
Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYEC 224
           K G+ V + C+     G   P + W   +   L   R  +    + I+G++  D GYY C
Sbjct: 322 KQGQDVTIPCKVT---GLPAPNVVWSH-NAKPLSGGRATVTDSGLVIKGVKNGDKGYYGC 377
Query: 225 VVSNE 229
             +NE
Sbjct: 378 RATNE 382

>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex Length = 339

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 73/197 (37%), Gaps = 16/197 (8%)
Query: 6   GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTV 65
           G  ETR+   +DG L + P   +DSG Y+C   N           L V F     F P +
Sbjct: 70  GEEETRM-WAQDGALWLLPALQEDSGTYVCTTRNA-SYCDKMSIELRV-FENTDAFLPFI 126
Query: 66  QY---LPFRLQGVVQC----HIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR 118
            Y   L     GV+ C        + T   + W KD  LL+    K + V     LL   
Sbjct: 127 SYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHD 186
Query: 119 VNQNHQGRYTCTPYNAHGTQ--GSSGQMEVLVRKPPAFT----IKPEAMYQRKVGESVDM 172
           V     G Y C    AH  Q    +  +E+ ++K    T    I P       +G  + +
Sbjct: 187 VALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTI 246
Query: 173 HCEAQEAEGTQKPTITW 189
            C+     GT   T+ W
Sbjct: 247 PCKVFLGTGTPLTTMLW 263

>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The A-Band Of Titin Length = 197

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 34/195 (17%)
Query: 257 TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE 316
           T+ SVTL W P    G    +NY++  RE   K +  +  T    T   +++L    +Y 
Sbjct: 18  TKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTV-ATNCHKTSWKVDQLQEGCSYY 76
Query: 317 FQVVGKNELGDGMLSNIXXXXXXXXXXXXXRNVSVTEVN-NGFVISWQPP-LERASLIQY 374
           F+V+ +NE G G+ +                 +++ +V  N   +SW+ P  +  S I  
Sbjct: 77  FRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILG 136
Query: 375 YLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTP 432
           Y+++ +T GS  W T    ++                             T+ TI  L  
Sbjct: 137 YIVEMQTKGSDKWATCATVKV-----------------------------TEATITGLIQ 167
Query: 433 ATTYEFQVVGKNELG 447
              Y F+V  +NE G
Sbjct: 168 GEEYSFRVSAQNEKG 182

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 100/257 (38%), Gaps = 33/257 (12%)
Query: 15  KKDGTLVINPVG----SDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
           ++ GTLVI+        +  G Y C   N  G   + +  L V   +K    P     P 
Sbjct: 70  RRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV---SKSPLWPKENLDPV 126
Query: 71  RLQGVVQCHIKANPT----FQYVTWTKDKRLLEPY-QTKDIVVMQNGSLLFTRVN-QNHQ 124
            +Q      ++ NP        + W      +EP  Q K +    NG L F+ V  Q+ Q
Sbjct: 127 VVQEGAPLTLQCNPPPGLPSPVIFWMSSS--MEPITQDKRVSQGHNGDLYFSNVMLQDMQ 184
Query: 125 GRYTCTPYNAHGT----QGSSGQMEVL-----VRKPPAFTIKPEAMYQRKVGESVDMHCE 175
             Y+C     H T    Q +   ++VL       + P+F         + V   +D+  E
Sbjct: 185 TDYSCN-ARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLE 243
Query: 176 AQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN--ITIEGLRRVDFGYYECVVSNEVATI 233
              A G   P I W ++ G  LP ++ K    N  + I  +   D G Y C+ SN++ +I
Sbjct: 244 CI-ASGVPTPDIAWYKKGG-DLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI 301
Query: 234 VQAAQLVVEGTQPHAPY 250
                + V+     APY
Sbjct: 302 RHTISVRVKA----APY 314

>pdb|2ED7|A Chain A, Solution Structure Of The First Fibronectin Type Iii Domain Of Human Netrin Receptor Dcc Length = 119

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 246 PHAPYNITGV--ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
           P AP ++  V  ++ F V L W P      ++ Q + +++  +G+     +  T PGS Q
Sbjct: 18  PSAPRDVVPVLVSSRF-VRLSWRPPAEAKGNI-QTFTVFFSREGDNRERALNTTQPGSLQ 75
Query: 304 ITINRLTPATTYEFQVVGKNELGDG 328
           +T+  L P   Y F+VV  NE G G
Sbjct: 76  LTVGNLKPEAMYTFRVVAYNEWGPG 100

>pdb|2ED7|A Chain A, Solution Structure Of The First Fibronectin Type Iii Domain Of Human Netrin Receptor Dcc Length = 119

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 26/115 (22%)
Query: 347 RNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYR 405
           R+V    V++ FV +SW+PP E    IQ + + +                   S  G+ R
Sbjct: 22  RDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFF-------------------SREGDNR 62
Query: 406 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
           E+       +  T PGS Q+T+  L P   Y F+VV  NE G G  S  + V T+
Sbjct: 63  ERA------LNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQ 111

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 4   KVGSLETRVVIKKDGT---LVINPVG-SDDSGLYMCEVSNGIGEPQAAQAYLNVE----- 54
           KV S    V+   DG    L I P+    D  +Y C  +N +GE   +     +E     
Sbjct: 46  KVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLP 105
Query: 55  --FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD-IVVMQN 111
             FP+ +   P ++ +       + C    NP  + ++W KD   ++P  +   I  +++
Sbjct: 106 PGFPS-IDMGPQLKVVEKARTATMLCAAGGNPDPE-ISWFKDFLPVDPATSNGRIKQLRS 163
Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSS-GQMEVLVRK 150
           G+L      ++ QG+Y C   N+ GT+ S+   + V VR+
Sbjct: 164 GALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRR 203

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 78  CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN----QNHQGRYTCTPYN 133
           C     P  + +TW K  + +   Q  +++   +G+    R+     Q  +  Y CT  N
Sbjct: 28  CQATGEPKPR-ITWMKKGKKVS-SQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATN 85
Query: 134 AHGTQGSSGQMEVLVRK--PPAF---TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT 188
           + G   +S ++ VL  +  PP F    + P+     K   +  M C A    G   P I+
Sbjct: 86  SLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKA-RTATMLCAAG---GNPDPEIS 141
Query: 189 WQRRDGV----ALPKNRVK-IVGGNITIEGLRRVDFGYYECVVSNEVAT 232
           W  +D +    A    R+K +  G + IE     D G YECV +N   T
Sbjct: 142 W-FKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGT 189

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 19/165 (11%)
Query: 89  VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
           ++W ++ +L+E  + K I+   N  L    +  +  G Y C   N  G       ++V V
Sbjct: 36  ISWFRNGKLIEENE-KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 94
Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR-DGVALPK------NR 201
            +P    +K E  Y+      V + C+A   EG   P ITW+R  DG    +       R
Sbjct: 95  -QPHIIQLKNETTYENG---QVTLVCDA---EGEPIPEITWKRAVDGFTFTEGDKSLDGR 147
Query: 202 VKIVG----GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           +++ G     ++ I+ ++  D G Y+C  ++ +    ++  L +E
Sbjct: 148 IEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 21/169 (12%)
Query: 78  CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN----QNHQGRYTCTPYN 133
           C     P  + +TW K  + +   Q  +++   +G+    R+     Q  +  Y CT  N
Sbjct: 29  CQATGEPKPR-ITWMKKGKKVS-SQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATN 86
Query: 134 AHGTQGSSGQMEVLVRKP-----PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT 188
           + G   +S ++ VL         P   + P+     K G +  M C A    G   P I+
Sbjct: 87  SLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEK-GRTATMLCAAG---GNPDPEIS 142
Query: 189 WQRRDGV----ALPKNRVK-IVGGNITIEGLRRVDFGYYECVVSNEVAT 232
           W  +D +    A    R+K +  G + IE     D G YECV +N   T
Sbjct: 143 W-FKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGT 190

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	460
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	8e-74
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-33
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-29
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-55
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-36
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-23
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	8e-22
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-50
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-30
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-23
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-46
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-31
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-16
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-45
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	9e-37
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-21
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-20
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-45
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	8e-10
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-45
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-34
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-22
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-19
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-43
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-35
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-29
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-21
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-21
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-43
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-26
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-22
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-42
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-42
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-37
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-36
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-33
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-25
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-20
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-20
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-42
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-32
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-21
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-20
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-06
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	6e-42
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	6e-29
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-13
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-41
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	6e-23
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	9e-41
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-29
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-25
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-18
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-17
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-40
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-21
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-19
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-38
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-38
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-37
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-36
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-25
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-19
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-38
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	8e-31
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-17
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-13
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	2e-36
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	2e-24
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	8e-21
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	8e-17
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	8e-36
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-14
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-05
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	1e-35
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	3e-15
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	2e-35
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	1e-12
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	4e-12
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-35
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-31
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-28
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-16
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	8e-35
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	3e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-34
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-30
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-27
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-25
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-33
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-16
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-13
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	6e-04
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	6e-33
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-20
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-11
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	1e-32
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	1e-20
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	7e-19
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	1e-32
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	4e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-32
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-31
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-30
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-30
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-27
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-21
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-05
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	6e-32
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	7e-06
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-31
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-14
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-06
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	1e-31
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	6e-15
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	2e-31
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-31
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-19
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-18
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	4e-31
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	1e-11
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	6e-31
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	1e-10
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	3e-10
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-30
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-17
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-14
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-10
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	7e-05
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	7e-30
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-22
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-18
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	8e-30
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-21
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-12
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-29
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	8e-16
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-29
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-21
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-15
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	9e-11
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-04
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	5e-29
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-13
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-06
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-28
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-22
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-04
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-28
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-20
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	7e-28
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-19
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	8e-11
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	7e-28
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	6e-07
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-27
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	6e-19
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-12
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-27
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-16
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-05
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-27
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-25
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-09
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-27
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-18
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-11
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	8e-27
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	1e-12
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	1e-26
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	7e-17
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	1e-13
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	2e-10
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	5e-26
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-23
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-10
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	6e-26
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	2e-24
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	1e-12
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	6e-11
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	9e-26
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-22
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	7e-12
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	4e-25
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	8e-10
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-24
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	5e-20
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	6e-08
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-24
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-17
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-13
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	3e-24
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	3e-23
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	4e-24
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	9e-08
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	4e-24
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	6e-23
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	2e-22
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	3e-08
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	6e-24
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	2e-10
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-24
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-19
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	5e-11
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-23
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-17
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-10
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-23
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-17
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-23
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-22
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	3e-23
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	5e-22
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	3e-21
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	4e-09
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	1e-06
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	5e-23
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-18
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	5e-12
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	1e-22
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	5e-21
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	3e-09
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-22
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-16
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-22
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-18
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-14
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-22
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-18
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-17
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	6e-08
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-05
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-22
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	6e-16
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-11
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-22
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-18
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	9e-11
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	1e-21
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	5e-04
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-21
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	8e-19
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	5e-07
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-21
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-20
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	6e-16
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	1e-21
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	8e-19
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-21
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-13
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-12
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-04
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	4e-21
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-16
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-07
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	6e-21
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	2e-08
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	6e-21
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-18
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-13
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-06
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	4e-20
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	5e-13
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	6e-20
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	6e-06
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	8e-05
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	7e-20
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	8e-20
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	7e-20
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	3e-17
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	3e-19
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	3e-08
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-19
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	7e-16
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	6e-04
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	5e-19
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	4e-06
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	6e-19
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	2e-15
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	9e-08
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	1e-05
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	6e-19
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	9e-16
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-06
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	1e-18
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	7e-15
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-18
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-15
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-05
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-05
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	1e-18
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	2e-15
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-18
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-12
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	6e-07
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	3e-18
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	9e-06
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	4e-18
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	5e-18
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-13
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	5e-04
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	6e-18
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	8e-18
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	4e-12
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-17
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-11
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	8e-10
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	4e-17
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	6e-14
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-05
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	5e-17
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-14
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	7e-08
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	5e-17
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	2e-12
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-17
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-15
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-14
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-12
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	9e-12
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	1e-16
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	1e-16
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	4e-13
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-16
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	4e-13
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-16
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-12
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	2e-16
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	4e-08
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	2e-16
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	1e-09
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	4e-16
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	1e-14
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	5e-16
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	3e-12
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	6e-16
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-10
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	9e-06
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	7e-16
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	1e-15
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	1e-15
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	3e-14
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	1e-15
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	2e-12
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-15
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	5e-15
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	6e-04
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-15
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-08
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	5e-06
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	2e-15
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	2e-13
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	2e-15
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	3e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-15
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	4e-12
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	4e-15
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	9e-15
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	4e-15
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	1e-13
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	5e-15
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	8e-05
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	5e-15
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	5e-06
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	3e-05
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	6e-15
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	8e-13
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	7e-15
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-10
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	7e-09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	7e-15
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-12
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-05
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-04
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	7e-15
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	2e-13
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	7e-15
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	6e-12
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	7e-15
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	3e-12
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	7e-15
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	4e-12
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	8e-15
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	5e-14
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	1e-14
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	8e-14
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-14
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	5e-13
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-11
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	5e-07
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	1e-14
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	4e-12
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	1e-14
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	3e-13
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-14
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	5e-09
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	6e-08
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	1e-14
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	1e-11
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-14
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-05
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	2e-14
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	5e-06
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-14
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	1e-06
2erj_C	247	Cytokine receptor common gamma chain; immune syste	2e-14
2erj_C	247	Cytokine receptor common gamma chain; immune syste	3e-07
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-14
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-12
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	6e-12
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-05
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	4e-14
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	4e-09
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	4e-14
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	1e-13
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	4e-14
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	6e-05
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	4e-14
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	2e-12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	5e-14
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	7e-12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-07
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-05
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	6e-14
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	8e-14
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	1e-10
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-13
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-05
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	6e-04
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	1e-13
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	1e-08
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	1e-13
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	5e-11
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-13
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-07
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	9e-05
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	2e-13
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	2e-12
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-13
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-09
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-05
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	3e-13
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	4e-13
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	3e-13
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	7e-09
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-13
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-06
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-05
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	4e-13
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-07
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-05
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	4e-13
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	1e-11
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-13
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	6e-06
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-05
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	5e-13
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	8e-13
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	5e-13
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	9e-12
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	5e-13
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	1e-04
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	5e-13
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	1e-12
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	5e-13
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-06
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-05
2crm_A	120	Fibronectin type-III domain containing protein 3A;	6e-13
2crm_A	120	Fibronectin type-III domain containing protein 3A;	1e-10
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	6e-13
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	3e-10
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	2e-06
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	8e-13
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-05
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	4e-04
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	8e-13
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	3e-11
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-12
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	7e-07
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	7e-06
2crz_A	110	Fibronectin type-III domain containing protein 3A;	1e-12
2crz_A	110	Fibronectin type-III domain containing protein 3A;	2e-09
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	2e-12
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	4e-12
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-12
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-07
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	7e-06
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	4e-12
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	4e-04
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	4e-12
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	9e-11
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	5e-12
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	2e-10
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	6e-12
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	4e-10
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	9e-12
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	1e-10
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	9e-12
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-06
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-05
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-11
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-10
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-07
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	1e-11
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	4e-11
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-11
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-10
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	5e-04
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	1e-11
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	1e-07
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	2e-11
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	6e-11
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-11
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-06
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-05
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	2e-11
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	6e-10
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	9e-10
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	1e-06
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-11
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	3e-07
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-05
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	2e-11
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	3e-10
2ens_A	96	Advanced glycosylation END product-specific recept	2e-11
2ens_A	96	Advanced glycosylation END product-specific recept	3e-08
2ens_A	96	Advanced glycosylation END product-specific recept	6e-06
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	3e-11
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-11
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	6e-08
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	9e-05
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	3e-11
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	3e-11
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	8e-07
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	3e-05
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	4e-11
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	6e-07
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	5e-11
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	7e-04
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	7e-11
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-06
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-05
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	7e-11
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	1e-07
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	9e-11
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-06
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	9e-11
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	6e-09
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-10
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-07
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-10
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	5e-07
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-06
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	1e-10
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	2e-05
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	2e-10
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	2e-07
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-10
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-07
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	6e-06
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	2e-10
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	7e-09
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	3e-10
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	2e-07
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	4e-10
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	8e-09
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	5e-10
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	7e-10
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	8e-10
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	4e-09
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	9e-10
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	4e-05
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	9e-10
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-06
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-04
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	1e-09
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	1e-09
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-09
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	5e-05
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-09
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	7e-04
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	8e-04
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-04
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-09
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-09
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	2e-09
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	5e-09
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-09
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	6e-06
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-04
3dlq_R	211	Interleukin-22 receptor subunit alpha-1; cytokine-	3e-09
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	3e-09
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	7e-07
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	4e-09
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	3e-08
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	5e-09
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	2e-08
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	6e-09
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-06
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	8e-04
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	6e-09
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	7e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-05
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	7e-09
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	8e-04
1y6k_R	214	Interleukin-10 receptor alpha chain; helix bundle,	8e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	8e-09
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-08
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	7e-04
3tgx_A	219	Interleukin-21 receptor; class I cytokine, class I	9e-09
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	9e-09
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	6e-06
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-04
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	1e-08
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	1e-07
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-08
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-07
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	1e-08
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	2e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-06
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	2e-08
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	2e-07
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	2e-08
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	2e-08
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	2e-08
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	2e-08
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	7e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	5e-08
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-05
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	5e-08
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	2e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-05
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	9e-04
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	5e-08
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-06
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	5e-05
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	5e-08
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	1e-04
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-04
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	5e-08
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-08
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	8e-08
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	4e-06
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	9e-08
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-04
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-07
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	4e-06
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	1e-07
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	6e-04
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-07
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-07
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	3e-06
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-04
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	2e-07
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	5e-07
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-07
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-05
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	4e-07
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-04
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-04
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	6e-07
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-04
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	6e-07
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-05
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-04
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	6e-07
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	6e-07
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	6e-07
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	7e-04
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	7e-07
1uc6_A	109	CNTF receptor, ciliary neurotrophic factor recepto	8e-07
1uc6_A	109	CNTF receptor, ciliary neurotrophic factor recepto	2e-04
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-06
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	4e-04
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	1e-06
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	1e-04
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-06
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-06
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	4e-05
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	9e-04
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-06
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-06
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-06
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-05
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	3e-06
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	5e-04
1he7_A	126	High affinity nerve growth factor receptor; transf	3e-06
1he7_A	126	High affinity nerve growth factor receptor; transf	3e-06
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	3e-06
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	4e-04
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	5e-06
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	5e-06
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	8e-06
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	7e-05
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	1e-05
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	3e-05
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-05
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	2e-05
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	1e-04
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	2e-05
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	2e-05
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	2e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	4e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	7e-05
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	4e-05
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-04
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	5e-05
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	9e-05
3og6_B	226	Interleukin 28 receptor, alpha (interferon, lambd	2e-04
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	2e-04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	2e-04
2dle_A	104	Receptor-type tyrosine-protein phosphatase ETA; pr	3e-04
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	3e-04
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	3e-04
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	5e-04
1fyh_B	229	Interferon-gamma receptor alpha chain; cytokine-re	7e-04

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  236 bits (603), Expect = 8e-74
 Identities = 75/392 (19%), Positives = 133/392 (33%), Gaps = 52/392 (13%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIV--------VMQNGSLLFTRVNQNHQGR 126
            + C  +  P  + +TW +        +    +           + SL    V  +  GR
Sbjct: 19  TLVCDAEGEPIPE-ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77

Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
           Y C   +  G    S  +++     P F       Y    G  +++ C+ +        +
Sbjct: 78  YDCEAASRIGGHQKSMYLDIEY--APKFISNQTIYY-SWEGNPINISCDVK---SNPPAS 131

Query: 187 ITWQRRDGVALPKN---RVKIVG----GNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239
           I W RRD + LP      +K         + I      DFG Y C  +N + T  Q   L
Sbjct: 132 IHW-RRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL 190

Query: 240 VVEGTQPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP 298
            +    P +PY +     ++ +  + +    S G     +Y +  +E  ++ W  +  + 
Sbjct: 191 ALADV-PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVR-SH 248

Query: 299 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NG 357
              T + +N L P TTYE +V   N  G G  S I + +T   +   P ++     +   
Sbjct: 249 GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKS 308

Query: 358 FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV 417
           F +S     +  + I  Y++                         +YR +  +D      
Sbjct: 309 FKLSITKQDDGGAPILEYIV-------------------------KYRSKDKEDQWLEKK 343

Query: 418 TPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
                  I +  L     YE Q+   N LG  
Sbjct: 344 VQGNKDHIILEHLQWTMGYEVQITAANRLGYS 375

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  129 bits (326), Expect = 1e-33
 Identities = 72/351 (20%), Positives = 122/351 (34%), Gaps = 25/351 (7%)

Query: 7   SLETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
           SL+ R+ +K      +L I  V   DSG Y CE ++ IG  Q    YL++E+  K     
Sbjct: 49  SLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQ-KSMYLDIEYAPKFISNQ 107

Query: 64  TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVN 120
           T+ Y        + C +K+NP    + W +DK +L    T ++     G    L     +
Sbjct: 108 TIYYSWEGNPINISCDVKSNPPAS-IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTS 166

Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAE 180
            N  GRY CT  N  GT     +  + +   P+     + +   +   +  +     ++ 
Sbjct: 167 DNDFGRYNCTATNHIGT--RFQEYILALADVPSSPYGVKIIELSQ--TTAKVSFNKPDSH 222

Query: 181 GTQKPTITW---QRRDGVALPKNRVKIVGG--NITIEGLRRVDFGYYECVVSNEV--ATI 233
           G     I       ++  +     V+  G    + +  L             N       
Sbjct: 223 GGVP--IHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDY 280

Query: 234 VQAAQLVVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWL 292
            +         +  +P +I G   +  S  L       GG  +   Y++ YR +  +D  
Sbjct: 281 SKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPI-LEYIVKYRSKDKEDQW 339

Query: 293 PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
                      I +  L     YE Q+   N LG    +  V   +  PKP
Sbjct: 340 LEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPT--VYEFSMPPKP 388

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  118 bits (297), Expect = 1e-29
 Identities = 57/317 (17%), Positives = 107/317 (33%), Gaps = 63/317 (19%)

Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQR-------RDGVALPKNRVKIVG----GNITIEG 213
                V + C+A   EG   P ITW+R        +G      R+++ G     ++ I+ 
Sbjct: 13  YENGQVTLVCDA---EGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKD 69

Query: 214 LRRVDFGYYECVVSNEVATIVQAAQLVVEG-----TQPHAPYNITGVATEFSVTLEWLPG 268
           ++  D G Y+C  ++ +    ++  L +E      +     Y+  G     S        
Sbjct: 70  VKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCD------ 123

Query: 269 YSGGPDLKQNYVIWYREQG---NKDWLPIPVTPPG-STQITINRLTPATTYEFQVVGKNE 324
               P      + W R++     K+   +     G    + I   +      +     N 
Sbjct: 124 VKSNPPAS---IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNH 180

Query: 325 LGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLE-RASLIQYYLIKYRTD 382
           +G      I+ +      P  P  V + E++     +S+  P       I +Y +     
Sbjct: 181 IGTRFQEYILALADV---PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQV----- 232

Query: 383 GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 442
                               + +E  ++ W  +  +    T + +N L P TTYE +V  
Sbjct: 233 --------------------DVKEVASEIWKIVR-SHGVQTMVVLNNLEPNTTYEIRVAA 271

Query: 443 KNELGDGMLSNIVVVKT 459
            N  G G  S I + +T
Sbjct: 272 VNGKGQGDYSKIEIFQT 288

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  189 bits (481), Expect = 1e-55
 Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 15/241 (6%)

Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
           ++RVV+   G L I+ +   DSG+Y C   N        +A + +     +         
Sbjct: 168 DSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQR 227

Query: 69  PFRLQGVV------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN 122
           P  +  +       +C +   P     TW + + +++  ++K   ++   +LL + V  +
Sbjct: 228 PSNVIAIEGKDAVLECCVSGYPPPS-FTWLRGEEVIQL-RSKKYSLLGGSNLLISNVTDD 285

Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT 182
             G YTC     +    +S ++ VLV  PP F   P  +Y       ++  C      G 
Sbjct: 286 DSGTYTCVVTYKNENISASAELTVLV--PPWFLNHPSNLY-AYESMDIEFEC---AVSGK 339

Query: 183 QKPTITWQRRDGVALPKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
             PT+ W +   V +P +  +IV G N+ I G+ + D G+Y+CV  NE      +AQL+V
Sbjct: 340 PVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399

Query: 242 E 242
            
Sbjct: 400 P 400

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  138 bits (349), Expect = 1e-36
 Identities = 58/250 (23%), Positives = 103/250 (41%), Gaps = 21/250 (8%)

Query: 7   SLETRVVIKKDGTLVINPV-----GSDDSGLYMCEVSNGI-GEPQAAQAYLNVEFPAKVT 60
            ++ R     +G+L+I  +        D GLY CE S G  G   +  A + V  P +  
Sbjct: 66  GMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFL 125

Query: 61  FTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD-IVVMQNGSLLFTRV 119
                         +++C +  +P    + W K+++ L P      +VV+ +G+L  +R+
Sbjct: 126 SQTESITAFMGDTVLLKCEVIGDPMPT-IHWQKNQQDLNPIPGDSRVVVLPSGALQISRL 184

Query: 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA------FTIKPEAMYQRKVGESVDMH 173
                G Y C+  N   T+ +  + EV +   P       F  +P  +     G+   + 
Sbjct: 185 QPGDSGVYRCSARNPASTR-TGNEAEVRILSDPGLHRQLYFLQRPSNVIAI-EGKDAVLE 242

Query: 174 CEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVA 231
           C      G   P+ TW R + V   +++   +  G N+ I  +   D G Y CVV+ +  
Sbjct: 243 CCVS---GYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNE 299

Query: 232 TIVQAAQLVV 241
            I  +A+L V
Sbjct: 300 NISASAELTV 309

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =   99 bits (249), Expect = 4e-23
 Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 26/246 (10%)

Query: 38  SNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL 97
            + +        +            P+          ++ C  +++     + W KD  +
Sbjct: 4   GSELES-SHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLI 62

Query: 98  LEPYQTKDIVVMQNGSLLFTRVN-----QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152
           L          + NGSLL   +      +  +G Y C           S   +V+V  P 
Sbjct: 63  LALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPL 122

Query: 153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL----PKNRVKIV-GG 207
            F  + E++    +G++V + C   E  G   PTI W +++   L      +RV ++  G
Sbjct: 123 RFLSQTESI-TAFMGDTVLLKC---EVIGDPMPTIHW-QKNQQDLNPIPGDSRVVVLPSG 177

Query: 208 NITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVVEG--------TQPHAPYNITGVATE 258
            + I  L+  D G Y C   N  +T     A++ +               P N+  +  +
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237

Query: 259 FSVTLE 264
               LE
Sbjct: 238 -DAVLE 242

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 96.1 bits (239), Expect = 8e-22
 Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 7/145 (4%)

Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
             +  +     L+I+ V  DDSG Y C V+       +A A L V  P      P+  Y 
Sbjct: 266 SKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNEN-ISASAELTVLVPPWFLNHPSNLYA 324

Query: 69  PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT 128
              +    +C +   P    V W K+  ++ P  +    ++   +L    V ++ +G Y 
Sbjct: 325 YESMDIEFECAVSGKPVPT-VNWMKNGDVVIP--SDYFQIVGGSNLRILGVVKSDEGFYQ 381

Query: 129 CTPYNAHGTQGSSGQMEVLVRKPPA 153
           C   N  G   SS Q+ V     PA
Sbjct: 382 CVAENEAGNAQSSAQLIVPK---PA 403

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  174 bits (442), Expect = 4e-50
 Identities = 54/257 (21%), Positives = 89/257 (34%), Gaps = 22/257 (8%)

Query: 1   MNTKVGSLETRVVIKKDGTLVINPVGSDDS---GLYMCEVSNGIGEPQAAQAYLNVEFPA 57
            N  V   + R+    DG L    V  +D      Y+C   N   + +       ++   
Sbjct: 144 PNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVT 203

Query: 58  KVTFT----PTVQYLPFRLQG------VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDI- 106
           K        P  QY+   +        ++ C   +NP   Y  + K+ + +       I 
Sbjct: 204 KDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPM-GYPNYFKNGKDVNGNPEDRIT 262

Query: 107 --VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQR 164
                    LLF       +G YTC   N  G       +++ V   P +  KPE +   
Sbjct: 263 RHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK-PQKHSLKLTVVSAPKYEQKPEKVIVV 321

Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYEC 224
           K G+ V + C+     G   P + W   +   L   R  +    + I+G++  D GYY C
Sbjct: 322 KQGQDVTIPCKV---TGLPAPNVVW-SHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGC 377

Query: 225 VVSNEVATIVQAAQLVV 241
             +NE         + V
Sbjct: 378 RATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  121 bits (305), Expect = 1e-30
 Identities = 63/356 (17%), Positives = 104/356 (29%), Gaps = 58/356 (16%)

Query: 7   SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
                 + K +G+LV     + D G Y C      G   +        +          +
Sbjct: 51  QEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEK 110

Query: 67  YL----PFRLQGVVQCHI-KANPTFQYVTWTKDKRLLEP-----YQTKDIVVMQNGSLLF 116
                 PF+L     C +  A P    +TW K     +P        + I    +G+L F
Sbjct: 111 TPIEGRPFQL----DCVLPNAYPKPL-ITWKKRLSGADPNADVTDFDRRITAGPDGNLYF 165

Query: 117 TRVNQN---HQGRYTCTPYNAHGTQGSSGQMEVL---------VRKPPAFTIKPEAMYQR 164
           T V +       +Y CT  NA   +        +          +  P      + M   
Sbjct: 166 TIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMM-A 224

Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR-------VKIVGGNITIEGLRRV 217
           K G+   ++C              +  ++G  +  N         +  G  +  +     
Sbjct: 225 KAGDVTMIYCMYG---SNPMGYPNY-FKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPE 280

Query: 218 DFGYYECVVSNEVATIV-QAAQLVVEGTQPH---APYNITGVATEFSVTLEWLPGYSGGP 273
           D G Y C V N V      + +L V    P     P  +  V     VT+      +G P
Sbjct: 281 DEGVYTCEVDNGVGKPQKHSLKLTVVS-APKYEQKPEKVIVVKQGQDVTIPCK--VTGLP 337

Query: 274 DLKQNYVIWYREQGNKDWLPIP---VTPPGSTQITINRLTPATTYEFQVVGKNELG 326
                 V+W       +  P+     T   S  + I  +       +     NE G
Sbjct: 338 APN---VVWS-----HNAKPLSGGRATVTDSG-LVIKGVKNGDKGYYGCRATNEHG 384

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 99.6 bits (248), Expect = 4e-23
 Identities = 42/211 (19%), Positives = 65/211 (30%), Gaps = 16/211 (7%)

Query: 51  LNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ 110
           L V+    +   P           V++C I+ N      +W KD +     +    +   
Sbjct: 1   LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60

Query: 111 NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESV 170
            GSL+F R   + +G Y C      G   SS  +        A   K         G   
Sbjct: 61  EGSLVFLRPQASDEGHYQCFAETPAGV-ASSRVISFRKTYLIASPAKTHEK-TPIEGRPF 118

Query: 171 DMHCEAQEAEGTQKPTITWQRRDGVALPKN-------RVKIV-GGNITIEGLRRVD---F 219
            + C         KP ITW++R   A P         R+     GN+    + + D    
Sbjct: 119 QLDCVL--PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDI 176

Query: 220 GYYECVVSNEVA-TIVQAAQLVVEGTQPHAP 249
             Y C   N      V   +  ++G      
Sbjct: 177 YKYVCTAKNAAVDEEVVLVEYEIKGVTKDNS 207

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  161 bits (410), Expect = 2e-46
 Identities = 58/288 (20%), Positives = 100/288 (34%), Gaps = 27/288 (9%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTP 131
            + C +  +P    V W +  + +     K  +         L+   V  +    Y    
Sbjct: 23  TLVCKVTGHPKPI-VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA 81

Query: 132 YNAHGTQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT 188
            N  G+   +  +EV V      P       A++    GE V +        G   P IT
Sbjct: 82  TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIPFS---GKPDPVIT 137

Query: 189 WQRRDGVAL-PKNRVKIVGGN-----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           W ++    +      +++        +   G+ R D G+Y     N      +  +L V 
Sbjct: 138 W-QKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196

Query: 243 GTQPHAPYN--ITGVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPP 299
              P  P    ++ V +  SV L W  P   GG  +  NY++       + W  + V   
Sbjct: 197 DV-PDPPRGVKVSDV-SRDSVNLTWTEPASDGGSKI-TNYIVEKCATTAERW--LRVGQA 251

Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTKGPKPGPP 346
             T+ T+  L   T+Y+F+V+ +N+ G    S       TK  K    
Sbjct: 252 RETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAM 299

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  121 bits (304), Expect = 3e-31
 Identities = 62/328 (18%), Positives = 114/328 (34%), Gaps = 59/328 (17%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----- 205
            P F  +   +   +   +  + C+     G  KP + W R+    +       +     
Sbjct: 4   APHFKEELRNLNV-RYQSNATLVCKVT---GHPKPIVKWYRQGKEIIADGLKYRIQEFKG 59

Query: 206 -GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG-TQPHAPYNITGVATEF---- 259
               + I  +   D   Y+   +N+  ++   A L VE   + H P  + G+        
Sbjct: 60  GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119

Query: 260 -SVTLEWLPGYSGGPDLKQNYVIWYREQ---GNKDWLPIPVTPPGSTQITINRLTPATTY 315
             V+++    +SG PD     + W + Q    N     + VT   ++ +  N +      
Sbjct: 120 EVVSIK--IPFSGKPDPV---ITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAG 174

Query: 316 EFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLE-RASLIQ 373
            + V  KN  G    +  + V      P PPR V V++V+   V ++W  P     S I 
Sbjct: 175 FYVVCAKNRFGIDQKTVELDVA---DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKIT 231

Query: 374 YYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPA 433
            Y++                         E      + W  + V     T+ T+  L   
Sbjct: 232 NYIV-------------------------EKCATTAERW--LRVGQARETRYTVINLFGK 264

Query: 434 TTYEFQVVGKNELGDG---MLSNIVVVK 458
           T+Y+F+V+ +N+ G       S   + K
Sbjct: 265 TSYQFRVIAENKFGLSKPSEPSEPTITK 292

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 79.4 bits (196), Expect = 1e-16
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 11/143 (7%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP--FRLQG 74
              L+I  V  DD+ +Y    +N  G   +  A L VE PAK+    T++ +     L+G
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119

Query: 75  ---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG-SLLFTR-VNQNHQGRYTC 129
               ++      P    +TW K + L++      ++V ++  SL+F   V +   G Y  
Sbjct: 120 EVVSIKIPFSGKPDPV-ITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVV 178

Query: 130 TPYNAHGTQGSSGQMEVLVRKPP 152
              N  G       +E+ V   P
Sbjct: 179 CAKNRFGI--DQKTVELDVADVP 199

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  162 bits (411), Expect = 1e-45
 Identities = 57/242 (23%), Positives = 89/242 (36%), Gaps = 21/242 (8%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV---EFPAKVTFTPTVQY 67
           R V ++ G L I  V   D G Y C V+N +   +       +          + P ++ 
Sbjct: 150 RFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV 209

Query: 68  LPFRLQGVVQ-------CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN 120
                    +       C    NP    + W +     +P   K      NG L      
Sbjct: 210 QFPETVPAEKGTTVKLECFALGNPVPT-ILWRRADG--KPIARKARRHKSNGILEIPNFQ 266

Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAE 180
           Q   G Y C   N+ G   + GQ+       P +      +    + ESV   C+A    
Sbjct: 267 QEDAGSYECVAENSRGKNVAKGQLTFYA--QPNWVQIINDI-HVAMEESVFWECKA---N 320

Query: 181 GTQKPTITWQRRDGVAL-PKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239
           G  KPT  W  ++G  L  ++R++I  G + I  +   D G Y+CV  N+   I  +A+L
Sbjct: 321 GRPKPTYRW-LKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379

Query: 240 VV 241
            V
Sbjct: 380 SV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  138 bits (348), Expect = 9e-37
 Identities = 75/342 (21%), Positives = 117/342 (34%), Gaps = 31/342 (9%)

Query: 2   NTKVGSLETRVVIKKDGTLVI-NPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT 60
            T V           DG+L+I NP  + D+G Y C  +N  G   + +A L   +     
Sbjct: 46  GTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFK 105

Query: 61  FTPTVQYLPFRLQGVV-QCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR 118
                     R QG+V  C     +       W  ++        +  V  + G+L   +
Sbjct: 106 TRTRSTVSVRRGQGMVLLCGPPPHSGELS-YAWIFNEYPSYQ-DNRRFVSQETGNLYIAK 163

Query: 119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLV--------RKPPAFTIKPEAMYQRKVGESV 170
           V ++  G YTC   N        G    L+           P   ++       + G +V
Sbjct: 164 VEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTV 223

Query: 171 DMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKIVGGNITIEGLRRVDFGYYECVVSNE 229
            + C A    G   PTI W+R DG  +  K R     G + I   ++ D G YECV  N 
Sbjct: 224 KLECFAL---GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENS 280

Query: 230 VATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK 289
               V   QL     QP+    I  +      ++ W    +G P        W      K
Sbjct: 281 RGKNVAKGQLTFY-AQPNWVQIINDIHVAMEESVFWECKANGRPKPT---YRWL-----K 331

Query: 290 DWLPIPVTP----PGSTQITINRLTPATTYEFQVVGKNELGD 327
           +  P+           T + I  +  +    +Q V +N+ G 
Sbjct: 332 NGDPLLTRDRIQIEQGT-LNITIVNLSDAGMYQCVAENKHGV 372

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 95.3 bits (237), Expect = 1e-21
 Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 26/228 (11%)

Query: 53  VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG 112
           V+ P+ V F    +    +L     C +K NP      W  +   ++         + +G
Sbjct: 9   VQEPSHVMFPLDSEEKKVKLS----CEVKGNPKPHI-RWKLNGTDVDI-GMDFRYSVVDG 62

Query: 113 SLLFTRVNQN-HQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
           SLL    N+    G Y C   N+ GT   S + ++       F  +  +    + G+ + 
Sbjct: 63  SLLINNPNKTQDAGTYQCIATNSFGTI-VSREAKLQFAYLENFKTRTRSTVSVRRGQGMV 121

Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNE 229
           + C       + + +  W   +  +   NR  +    GN+ I  + + D G Y CVV+N 
Sbjct: 122 LLCGP--PPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNT 179

Query: 230 VAT---IVQAAQLVVEGT----------QPHAPYNITGVATEFSVTLE 264
           V     +     L++             +   P  +       +V LE
Sbjct: 180 VTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGT-TVKLE 226

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 92.6 bits (230), Expect = 1e-20
 Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 5/137 (3%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
               K +G L I     +D+G Y C   N  G+   A+  L               ++  
Sbjct: 251 ARRHKSNGILEIPNFQQEDAGSYECVAENSRGK-NVAKGQLTFYAQPNWVQIINDIHVAM 309

Query: 71  RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
                 +C     P      W K+   L     +D + ++ G+L  T VN +  G Y C 
Sbjct: 310 EESVFWECKANGRPKPT-YRWLKNGDPLLT---RDRIQIEQGTLNITIVNLSDAGMYQCV 365

Query: 131 PYNAHGTQGSSGQMEVL 147
             N HG   SS ++ V+
Sbjct: 366 AENKHGVIFSSAELSVI 382

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  159 bits (404), Expect = 1e-45
 Identities = 54/250 (21%), Positives = 103/250 (41%), Gaps = 13/250 (5%)

Query: 9   ETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTV 65
             RVV++K+G    L I     +D+G+Y C+ ++  G+ Q A   L +          + 
Sbjct: 48  TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSP 107

Query: 66  QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQG 125
           Q         V C + ++P    V+W      +         ++ N +L    +N++ +G
Sbjct: 108 QEFKQGEDAEVVCRVSSSPAPA-VSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEG 166

Query: 126 RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQR-KVGESVDMHCEAQEAEGTQK 184
            Y C        +     + V+V  PPA ++  ++     + GE +   C    A G+ +
Sbjct: 167 IYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC---RASGSPE 223

Query: 185 PTITWQRRDGVALPKN-RVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
           P I+W  R+G  + +N +  +      +T+  +   D G Y C  +N+     + A L V
Sbjct: 224 PAISW-FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282

Query: 242 EGTQPHAPYN 251
              Q H  ++
Sbjct: 283 FV-QHHHHHH 291

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 58.7 bits (142), Expect = 8e-10
 Identities = 34/222 (15%), Positives = 56/222 (25%), Gaps = 36/222 (16%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKI----V 205
               TI    +    VGES    C A    G    +I W    G  +    RV +    V
Sbjct: 4   LLQVTISLSKVELS-VGESKFFTCTA---IGE-PESIDWYNPQGEKIISTQRVVVQKEGV 58

Query: 206 GGNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVVEGTQPH---APYNITGVATEFSV 261
              +TI      D G Y C  ++      +A   L +   +                   
Sbjct: 59  RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY-QKLTFREVVSPQE-FKQGEDA 116

Query: 262 TLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQIT------INRLTPATTY 315
            +      S  P      V W           +         +       I  +  +   
Sbjct: 117 EVVCRV--SSSPAPA---VSWLYHNE-----EVTTISDNRFAMLANNNLQILNINKSDEG 166

Query: 316 EFQVVGKNELGDGMLSNIVVVKTKGP----KPGPPRNVSVTE 353
            ++  G+ E    +    ++V    P     P    N +   
Sbjct: 167 IYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAER 208

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  161 bits (408), Expect = 2e-45
 Identities = 51/247 (20%), Positives = 88/247 (35%), Gaps = 25/247 (10%)

Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA----AQAYLNVEFPAKVTFTPT 64
             R V +  G L I    + D G Y C  ++ I           + L++       + P+
Sbjct: 149 GRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPS 208

Query: 65  VQYLPFRLQGVV-------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT 117
           ++         +       +C    NP  Q + W K              +     L   
Sbjct: 209 IKAKFPADTYALTGQMVTLECFAFGNPVPQ-IKWRKLDGSQTSK-----WLSSEPLLHIQ 262

Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ 177
            V+   +G Y C   N  G     G+  +++   P +        +  +G  +   C A 
Sbjct: 263 NVDFEDEGTYECEAENIKGRDTYQGR--IIIHAQPDWLDVITDT-EADIGSDLRWSCVA- 318

Query: 178 EAEGTQKPTITWQRRDGVALPKN-RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA 236
              G  +P + W  RDG  L    R+++ GG +    L   D G Y+CV  N+  T+  +
Sbjct: 319 --SGKPRPAVRW-LRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYAS 375

Query: 237 AQLVVEG 243
           A+L V+ 
Sbjct: 376 AELTVQA 382

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  131 bits (331), Expect = 2e-34
 Identities = 69/342 (20%), Positives = 111/342 (32%), Gaps = 33/342 (9%)

Query: 2   NTKVGSLETRVVIKKDGTLVI-NPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT 60
            T++            G LVI NPV + D+G Y C  +N  G   + +A L   F  + +
Sbjct: 45  GTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFS 104

Query: 61  FTPTVQYLPFRLQGVV-QCHIKA-NPTFQYVTWTKD-KRLLEPYQTKDIVVMQNGSLLFT 117
                        GV+  C      P      W  +      P   +  V    G+L   
Sbjct: 105 AEERDPVKITEGWGVMFTCSPPPHYPALS-YRWLLNEFPNFIPADGRRFVSQTTGNLYIA 163

Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK---------PPAFTIKPEAMYQRKVGE 168
           +   +  G Y+C   +       S   +               P+   K  A      G+
Sbjct: 164 KTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQ 223

Query: 169 SVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSN 228
            V + C A    G   P I W++ DG     ++       + I+ +   D G YEC   N
Sbjct: 224 MVTLECFAF---GNPVPQIKWRKLDGS--QTSKWLSSEPLLHIQNVDFEDEGTYECEAEN 278

Query: 229 EVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN 288
                    ++++   QP     IT    +    L W    SG P      V W      
Sbjct: 279 IKGRDTYQGRIIIH-AQPDWLDVITDTEADIGSDLRWSCVASGKPRPA---VRWL----- 329

Query: 289 KDWLPIPVTP----PGSTQITINRLTPATTYEFQVVGKNELG 326
           +D  P+         G   +  ++L    +  +Q V +N+ G
Sbjct: 330 RDGQPLASQNRIEVSGGE-LRFSKLVLEDSGMYQCVAENKHG 370

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 97.2 bits (242), Expect = 3e-22
 Identities = 32/145 (22%), Positives = 51/145 (35%), Gaps = 5/145 (3%)

Query: 3   TKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFT 62
            K+   +T   +  +  L I  V  +D G Y CE  N  G     Q  + +         
Sbjct: 242 RKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGR-DTYQGRIIIHAQPDWLDV 300

Query: 63  PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN 122
            T             C     P    V W +D + L     ++ + +  G L F+++   
Sbjct: 301 ITDTEADIGSDLRWSCVASGKPRPA-VRWLRDGQPLAS---QNRIEVSGGELRFSKLVLE 356

Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVL 147
             G Y C   N HGT  +S ++ V 
Sbjct: 357 DSGMYQCVAENKHGTVYASAELTVQ 381

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 89.5 bits (222), Expect = 1e-19
 Identities = 45/299 (15%), Positives = 85/299 (28%), Gaps = 36/299 (12%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN-HQGRYTCTPYN 133
            + C  +ANP   Y  W  +   L+         +  G L+ +   +    G Y C   N
Sbjct: 26  TLTCRARANPPATY-RWKMNGTELKM-GPDSRYRLVAGDLVISNPVKAKDAGSYQCVATN 83

Query: 134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
           A GT   S +  +       F+ +     +   G  V   C           +  W   +
Sbjct: 84  ARGTV-VSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSP--PPHYPALSYRWLLNE 140

Query: 194 GVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATI-----VQAAQLVVEGT 244
                    +       GN+ I      D G Y C  ++ +  I      + +QL +   
Sbjct: 141 FPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 200

Query: 245 QP---------HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP 295
                        P +   +  +  VTLE      G P  +   + W +  G+       
Sbjct: 201 DARQYAPSIKAKFPADTYALTGQ-MVTLECF--AFGNPVPQ---IKWRKLDGS---QTSK 251

Query: 296 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK-PGPPRNVSVTE 353
                   + I  +       ++   +N  G       +++  + P       +     
Sbjct: 252 WLSSEPL-LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ-PDWLDVITDTEADI 308

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  161 bits (408), Expect = 1e-43
 Identities = 52/241 (21%), Positives = 89/241 (36%), Gaps = 21/241 (8%)

Query: 7   SLETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-PAKVTFTPT 64
            +  R+ +  D  TL +  V  +D G Y C + N +    +    LNV + P   T +P+
Sbjct: 330 PVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPS 389

Query: 65  VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQ 124
             Y    +   + CH  +NP  QY +W  D  + +              L  + + + + 
Sbjct: 390 YTYYRPGVNLSLSCHAASNPPAQY-SWLIDGNIQQH----------TQELFISNITEKNS 438

Query: 125 GRYTCTPYNAHGTQGSSGQMEVLV-RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ 183
           G YTC   N+      +    + V  + P  +I        +  ++V   CE       Q
Sbjct: 439 GLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEP----EAQ 494

Query: 184 KPTITWQRRDGVALPKNRVKIVGGN--ITIEGLRRVDFGYYECVVSNEVATIV-QAAQLV 240
             T  W           R+++  GN  +T+  + R D   Y C + N V+        L 
Sbjct: 495 NTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLD 554

Query: 241 V 241
           V
Sbjct: 555 V 555

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  138 bits (349), Expect = 1e-35
 Identities = 65/370 (17%), Positives = 119/370 (32%), Gaps = 36/370 (9%)

Query: 1   MNTKVGSLETRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-PAK 58
           +N +   +  R+ +     TL +  V  +D+  Y CE  N +   ++    LNV + P  
Sbjct: 146 VNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDA 205

Query: 59  VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR 118
            T +P            + CH  +NP  QY +W  +    +              L    
Sbjct: 206 PTISPLNTSYRSGENLNLSCHAASNPPAQY-SWFVNGTFQQS----------TQELFIPN 254

Query: 119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR-KPPAFTIKPEAMYQRKVGESVDMHCEAQ 177
           +  N+ G YTC  +N+      +    + V  +PP   I        +  ++V + CE  
Sbjct: 255 ITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEP- 313

Query: 178 EAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEV-ATIV 234
                Q  T  W   +       R+++      +T+  + R D G YEC + NE+     
Sbjct: 314 ---EIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHS 370

Query: 235 QAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI 294
               L V         + +       V L      +  P  +     W  + GN      
Sbjct: 371 DPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQ---YSWLID-GN------ 420

Query: 295 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGP---PRNVSV 351
            +       + I+ +T   +  +     N       + +  +      P P     N   
Sbjct: 421 -IQQHTQE-LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKP 478

Query: 352 TEVNNGFVIS 361
            E  +    +
Sbjct: 479 VEDKDAVAFT 488

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  121 bits (304), Expect = 1e-29
 Identities = 60/364 (16%), Positives = 114/364 (31%), Gaps = 36/364 (9%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIG--EPQAAQAYLNVEFPAKVTFTPTVQYL 68
           R +I  + +L+I  +  +D+G Y   V       E    Q  +  E P     +   + +
Sbjct: 64  REIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPV 123

Query: 69  PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT 128
             +      C  +      Y+ W  ++ L  P   +  +   N +L    V +N    Y 
Sbjct: 124 EDKDAVAFTCEPETQDA-TYLWWVNNQSL--PVSPRLQLSNGNRTLTLFNVTRNDTASYK 180

Query: 129 CTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT 188
           C   N    +  S  + + V   P            + GE++++ C    A        +
Sbjct: 181 CETQNPVSAR-RSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSC---HAASNPPAQYS 236

Query: 189 WQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHA 248
           W   +G              + I  +   + G Y C   N    + +     +       
Sbjct: 237 W-FVNGTFQQST------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPP 289

Query: 249 -----PYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP----VTPP 299
                  N   V  E +V L          +      +W+    N   LP+     ++  
Sbjct: 290 KPFITSNNSNPVEDEDAVALT---CEPEIQNTT---YLWWV---NNQSLPVSPRLQLSND 340

Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV 359
             T +T+  +T      ++   +NEL     S+ V++        P  + S T    G  
Sbjct: 341 NRT-LTLLSVTRNDVGPYECGIQNELSVDH-SDPVILNVLYGPDDPTISPSYTYYRPGVN 398

Query: 360 ISWQ 363
           +S  
Sbjct: 399 LSLS 402

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 95.8 bits (238), Expect = 3e-21
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 12/139 (8%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-PAKVTFTPTVQYLP 69
             +   + TL +  V  +D+  Y+C + N +   ++    L+V + P     +P      
Sbjct: 513 LQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYL 572

Query: 70  FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTC 129
                 + CH  +NP+ QY +W  +    +              L   ++  N+ G Y C
Sbjct: 573 SGANLNLSCHSASNPSPQY-SWRINGIPQQH----------TQVLFIAKITPNNNGTYAC 621

Query: 130 TPYNAHGTQGSSGQMEVLV 148
              N    + +S    + V
Sbjct: 622 FVSNLATGRNNSIVKSITV 640

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 94.3 bits (234), Expect = 8e-21
 Identities = 43/291 (14%), Positives = 84/291 (28%), Gaps = 37/291 (12%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLE-----------------PYQTKDIVVMQNGSLLFT 117
           ++  H      F Y +W K +R+                   P  +   ++  N SLL  
Sbjct: 18  LLLVHNLPQHLFGY-SWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQ 76

Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ 177
            + QN  G YT     +      +     +  + P  +I        +  ++V   CE +
Sbjct: 77  NIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPE 136

Query: 178 EAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQ 235
               TQ  T  W   +       R+++      +T+  + R D   Y+C   N V+    
Sbjct: 137 ----TQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRS 192

Query: 236 A-AQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI 294
               L V         +    +      L      +  P  +     W+           
Sbjct: 193 DSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQ---YSWFVNG-------- 241

Query: 295 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGP 345
                 + ++ I  +T   +  +     N       + +  +      P P
Sbjct: 242 -TFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKP 291

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  153 bits (388), Expect = 2e-43
 Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 13/233 (5%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
             TL I     DD+G+Y C V+   G    A   + +         PT Q        V+
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
            C + ++     + W    R +   +    +V+ N  L    + +  +G Y C       
Sbjct: 121 VCDVVSSLPPT-IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179

Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQR-KVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
            + +   ++V+V  PP    +   +     +G+SV + C   +A+G  +PT++W  +DG 
Sbjct: 180 GEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVC---DADGFPEPTMSWT-KDGE 235

Query: 196 ALPKNR-------VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
            +                  +TI  + + D   Y C+  N+      +  L V
Sbjct: 236 PIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  106 bits (265), Expect = 5e-26
 Identities = 42/202 (20%), Positives = 70/202 (34%), Gaps = 21/202 (10%)

Query: 77  QCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTPY 132
            C +  +   + ++W   +   L P Q +  VV     + +L     N +  G Y C   
Sbjct: 23  LCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVT 82

Query: 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
              GTQ S   + V + +   F   P    + K GE   + C+      +  PTI W + 
Sbjct: 83  AEDGTQ-SEATVNVKIFQKLMFKNAPTPQ-EFKEGEDAVIVCDV---VSSLPPTIIW-KH 136

Query: 193 DGVALP---KNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG----- 243
            G  +      R  ++    + I G+++ D G Y C         +    + V       
Sbjct: 137 KGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPT 196

Query: 244 -TQPHAPYNITGVATEFSVTLE 264
                +  N T      SVTL 
Sbjct: 197 VQARQSIVNAT-ANLGQSVTLV 217

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 94.6 bits (235), Expect = 6e-22
 Identities = 32/147 (21%), Positives = 51/147 (34%), Gaps = 7/147 (4%)

Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA-AQAYLNVEFPAKVTFTPTVQY 67
           + R ++  +  L I  +   D G Y CE               + V  P  V    ++  
Sbjct: 146 DVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVN 205

Query: 68  LPFRLQGVV--QCHIKANPTFQYVTWTKDKRLLEP---YQTKDIVVMQNGSLLFTRVNQN 122
               L   V   C     P    ++WTKD   +E       K I    +  L    V++N
Sbjct: 206 ATANLGQSVTLVCDADGFPEPT-MSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN 264

Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVR 149
            +  Y C   N  G Q +S  ++V  +
Sbjct: 265 DEAEYVCIAENKAGEQDASIHLKVFAK 291

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 11/100 (11%)

Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV---- 205
           +     I P    +  VGES    C+       +   I+W   +G  L  N+ +I     
Sbjct: 1   RVLQVDIVPSQG-EISVGESKFFLCQVA--GDAKDKDISWFSPNGEKLSPNQQRISVVWN 57

Query: 206 ---GGNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVV 241
                 +TI      D G Y+CVV+ E  T  +A   + +
Sbjct: 58  DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  160 bits (405), Expect = 1e-42
 Identities = 92/469 (19%), Positives = 152/469 (32%), Gaps = 80/469 (17%)

Query: 13  VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
           V +  GTL+I     +DSG Y+C V+N +G  ++ +  L V  P      P  Q + F  
Sbjct: 301 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGR 359

Query: 73  QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY 132
             V  C    NP    V+W KD + +               L    V +  +G Y C   
Sbjct: 360 PAVFTCQYTGNPIKT-VSWMKDGKAIGH---------SESVLRIESVKKEDKGMYQCFVR 409

Query: 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
           N   +  +S ++++  R  P    +       + G SV + C    A G   P I+W+  
Sbjct: 410 NDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKC---VAGGNPTPEISWELD 466

Query: 193 DGVALPKNRVKI---------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
                  +R ++         V   + I  +   D G Y+C+  ++V     +A+L V G
Sbjct: 467 GKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG 526

Query: 244 -TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP------V 296
                       VA E ++ +      +G P      ++W R+        +P      V
Sbjct: 527 LPYIRQMEKKAIVAGE-TLIVTC--PVAGYPIDS---IVWERDNR-----ALPINRKQKV 575

Query: 297 TPPGSTQIT-INRLTPATTYEFQVVGKNELGDG-MLSNIVVVKTKGPKPGPPRNVSVTEV 354
            P G+  I  + R +   TY    V KN+ G     S  V V                +V
Sbjct: 576 FPNGTLIIENVERNSDQATYT--CVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQV 633

Query: 355 NNGFVISWQ-----PPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGN 409
                +         PL          I +  DG         I  +             
Sbjct: 634 GQYLTLHCSVPGGDLPLN---------IDWTLDGQ-------AISEDLGITTSR------ 671

Query: 410 KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 458
                        + +TI  +  +    F    +N  G    +  + V 
Sbjct: 672 --------VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY 712

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  158 bits (400), Expect = 5e-42
 Identities = 49/253 (19%), Positives = 92/253 (36%), Gaps = 20/253 (7%)

Query: 11  RVVIKKDGTLVINPVG-SDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKV-TFTPTVQYL 68
           +  +  +GTL+I  V  + D   Y C   N  G        + V    ++  F       
Sbjct: 572 KQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPA 631

Query: 69  PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP--YQTKDIVVMQNGSLLFTRVNQNHQGR 126
                  + C +        + WT D + +      T   V  +   L    V  +H G 
Sbjct: 632 QVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGN 691

Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
           +TC   N  G Q  +  + V V  PP + ++P        G    + C+A    G  KP 
Sbjct: 692 FTCHARNLAGHQQFTTPLNVYV--PPRWILEPTDKAFA-QGSDAKVECKAD---GFPKPQ 745

Query: 187 ITWQRRDGVALPKN--------RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238
           +TW ++     P           +++  G + ++ +++ + GYY C   N + + + A  
Sbjct: 746 VTW-KKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVI 804

Query: 239 LVVEGTQPHAPYN 251
           ++      H  ++
Sbjct: 805 MISVQAHHH-HHH 816

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  144 bits (365), Expect = 2e-37
 Identities = 75/371 (20%), Positives = 125/371 (33%), Gaps = 52/371 (14%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
           + +   +  L I  V  +D G+Y C V N     + A A L +       F P V    F
Sbjct: 382 KAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAE-ASAELKLG----GRFDPPVIRQAF 436

Query: 71  RLQGVV-------QCHIKANPTFQYVTWTKDKRLLEP---YQTKDIVVMQ---NGSLLFT 117
           + + +        +C    NPT + ++W  D + +     YQ    V +       L  T
Sbjct: 437 QEETMEPGPSVFLKCVAGGNPTPE-ISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNIT 495

Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVL----VRKPPAFTIKPEAMYQRKVGESVDMH 173
            V+ N  G Y C   +  G    S ++ V     +R+     I          GE++ + 
Sbjct: 496 SVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAI--------VAGETLIVT 547

Query: 174 CEAQEAEGTQKPTITWQRRDGVALPKN-RVKIV-GGNITIEGL-RRVDFGYYECVVSNEV 230
           C      G    +I W  RD  ALP N + K+   G + IE + R  D   Y CV  N+ 
Sbjct: 548 C---PVAGYPIDSIVW-ERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQE 603

Query: 231 ATIVQA-AQLVVEGT---QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ 286
               +   ++ V       P A            +TL       GG       + W  + 
Sbjct: 604 GYSARGSLEVQVMVLPRIIPFAFEEGP-AQVGQYLTLHCSV--PGGD--LPLNIDWTLDG 658

Query: 287 G---NKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
                   +         + +TI  +  +    F    +N  G    +  + V    P+ 
Sbjct: 659 QAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP-PRW 717

Query: 344 -GPPRNVSVTE 353
              P + +  +
Sbjct: 718 ILEPTDKAFAQ 728

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  140 bits (355), Expect = 4e-36
 Identities = 66/369 (17%), Positives = 118/369 (31%), Gaps = 46/369 (12%)

Query: 11  RVVIKKDGTLVINPVG-SDDSGLYMCEVSNGIG--EPQAAQAYLNVEFPAKVTFTPTVQY 67
           + ++   G L I  VG  D    Y C   + +      +A     V      +  P V  
Sbjct: 192 KYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVS 251

Query: 68  LPFRLQGVV--------QCHIKANPTFQYVTWTKDKRLL---EPYQTKDIVVMQNGSLLF 116
           L                 C  +  P      W K        +     D V   +G+L+ 
Sbjct: 252 LAKFDMKTYSGSSTMALLCPAQGYPVPV-FRWYKFIEGTTRKQAVVLNDRVKQVSGTLII 310

Query: 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEA 176
                   G+Y C   N+ G +       + V  P +  I P        G      C  
Sbjct: 311 KDAVVEDSGKYLCVVNNSVGGESVETV--LTVTAPLSAKIDPPTQ-TVDFGRPAVFTC-- 365

Query: 177 QEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA 236
            +  G    T++W  +DG A+  +        + IE +++ D G Y+C V N+  +   +
Sbjct: 366 -QYTGNPIKTVSW-MKDGKAIGHS-----ESVLRIESVKKEDKGMYQCFVRNDRESAEAS 418

Query: 237 AQLVVEGTQP-----HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE-----Q 286
           A+L + G         A    T +    SV L+ +    G P  +   + W  +      
Sbjct: 419 AELKLGGRFDPPVIRQAFQEET-MEPGPSVFLKCVA--GGNPTPE---ISWELDGKKIAN 472

Query: 287 GNKDWLPIPVTPPGSTQIT--INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPG 344
            ++  +   VT  G       I  +       ++ + K+++G    S  + V    P   
Sbjct: 473 NDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGL-PYIR 531

Query: 345 PPRNVSVTE 353
                ++  
Sbjct: 532 QMEKKAIVA 540

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  132 bits (333), Expect = 3e-33
 Identities = 64/383 (16%), Positives = 116/383 (30%), Gaps = 48/383 (12%)

Query: 2   NTKVGSLETRVVIKKDGTLVINPVGSDD------SGLYMCEVSNGIGEPQAAQAYLNVEF 55
            T VG +     I  DG LV  P  ++D      + +Y C   N  G   +   ++    
Sbjct: 78  GTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV 137

Query: 56  PAKVTFTPTVQYLPFRLQGVVQCHIK---ANPTFQYVTWTKDKRLLEPYQTKD---IVVM 109
                     +++      V++C I    A+     V+W  D+        +     +V+
Sbjct: 138 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEV-VSWHTDEEENYFPGAEYDGKYLVL 196

Query: 110 QNGSLLFTRVNQNH-QGRYTCTPYNAHGTQGSSGQMEVLV--------RKPPAFTIKPEA 160
            +G L    V        Y C   +    +      +  +          P   ++    
Sbjct: 197 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFD 256

Query: 161 MYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-------RVKIVGGNITIEG 213
           M       ++ + C AQ   G   P   W  +      +        RVK V G + I+ 
Sbjct: 257 MKTYSGSSTMALLCPAQ---GYPVPVFRW-YKFIEGTTRKQAVVLNDRVKQVSGTLIIKD 312

Query: 214 LRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGP 273
               D G Y CVV+N V        L V      A  +      +F     +   Y+G P
Sbjct: 313 AVVEDSGKYLCVVNNSVGGESVETVLTVT-APLSAKIDPPTQTVDFGRPAVFTCQYTGNP 371

Query: 274 DLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 333
                 V W ++          +    S  + I  +       +Q   +N+      S  
Sbjct: 372 IKT---VSWMKDG-------KAIGHSESV-LRIESVKKEDKGMYQCFVRNDRESAEASAE 420

Query: 334 VVVKTKGPKP---GPPRNVSVTE 353
           + +  +   P      +  ++  
Sbjct: 421 LKLGGRFDPPVIRQAFQEETMEP 443

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  108 bits (271), Expect = 2e-25
 Identities = 47/363 (12%), Positives = 95/363 (26%), Gaps = 35/363 (9%)

Query: 20  LVINPVGSDDSGLYMCEVSNGIGEPQ-AAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV-Q 77
           + +         L+        G    AA      +        PT +       G   +
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 78  CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN------QNHQGRYTCTP 131
           C    NP  +   W +              +  +G L+F          + H   Y C  
Sbjct: 61  CKASGNPMPEI-IWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119

Query: 132 YNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR 191
            N  G+  S   + V       +       +    G S  + C            ++W  
Sbjct: 120 RNQFGSIISR-DVHVRAVVAQYYEADVNKEHVI-RGNSAVIKCLIPSFVADFVEVVSWHT 177

Query: 192 RDGVALPKN-----RVKIV-GGNITIEGLRRVD-FGYYECVVSNEV--ATIVQAAQLVVE 242
            +            +  ++  G + I  +   D +  Y+C   + +   T + A +  + 
Sbjct: 178 DEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLV 237

Query: 243 GTQPHAPYNITGVATEFSVTLEWLPG--------YSGGPDLKQNYVIWYREQG----NKD 290
            T+P +      V+        +             G P        WY+        + 
Sbjct: 238 ITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPV---FRWYKFIEGTTRKQA 294

Query: 291 WLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVS 350
            +        S  + I       + ++  V  N +G   +  ++ V         P   +
Sbjct: 295 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 354

Query: 351 VTE 353
           V  
Sbjct: 355 VDF 357

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 92.3 bits (229), Expect = 5e-20
 Identities = 51/329 (15%), Positives = 95/329 (28%), Gaps = 50/329 (15%)

Query: 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEA 176
                     +      A G+Q  +       +K P F  +P            ++ C  
Sbjct: 4   PNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIEC-- 61

Query: 177 QEAEGTQKPTITWQRRDGVAL---PKNRVKIVGGNITIEGLRRVDF------GYYECVVS 227
            +A G   P I W R DG A+   P  R     G +     R  D+        Y C+  
Sbjct: 62  -KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120

Query: 228 NEVATIVQAAQLVVEGTQPH---APYNITGVATEFSVTLE-WLPGYSGGPDLKQNYVIWY 283
           N+  +I+     V      +          +    S  ++  +P +          V W+
Sbjct: 121 NQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGN-SAVIKCLIPSFVADFVEV---VSWH 176

Query: 284 REQGNKDWLPIP----VTPPGSTQITINRLTPA-TTYEFQVVGKNELGDGMLSNI---VV 335
            ++    +             S ++ I  + P      +Q   K+ L      +     +
Sbjct: 177 TDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRL 236

Query: 336 VKTKGPKPGPPRNVSVTEVNNGFV-------------------ISWQPPLERASLIQYYL 376
           V T+      P+ VS+ + +                         W   +E  +  Q  +
Sbjct: 237 VITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVV 296

Query: 377 IKYRTDGSWKTLNKGQIRPEENSYLGEYR 405
           +  R      TL       E++   G+Y 
Sbjct: 297 LNDRVKQVSGTLIIKDAVVEDS---GKYL 322

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 91.5 bits (227), Expect = 9e-20
 Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 7/153 (4%)

Query: 6   GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTV 65
             + T  V ++   L I  V +  +G + C   N  G  Q     LNV  P +    PT 
Sbjct: 665 LGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQ-FTTPLNVYVPPRWILEPTD 723

Query: 66  QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL----EPYQTKDIVVMQNGSLLFTRVNQ 121
           +         V+C     P  Q VTW K         +  +  D + ++ G+L    + +
Sbjct: 724 KAFAQGSDAKVECKADGFPKPQ-VTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQK 782

Query: 122 NHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAF 154
            ++G Y C   N  G+  S+  M   V+     
Sbjct: 783 TNEGYYLCEAINGIGSGLSAVIMIS-VQAHHHH 814

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  153 bits (388), Expect = 3e-42
 Identities = 54/248 (21%), Positives = 83/248 (33%), Gaps = 27/248 (10%)

Query: 11  RVVIKKDGTLVINPVG-SDDSGLYMCEVSNGIGEP--QAAQAYLNV-------EFPAKVT 60
           RV    +G L  + V   D    Y C           Q     L V       E      
Sbjct: 164 RVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFM 223

Query: 61  FTPTVQYLPFRLQG---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT 117
           +          L+G   +++C     PT   + W K    L   + K      N +L  T
Sbjct: 224 YPQGTASSQMVLRGMDLLLECIASGVPTPD-IAWYKKGGDLPSDKAK--FENFNKALRIT 280

Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ 177
            V++   G Y C   N  G+   +  + V     P +  +P+ +     GE   + C A 
Sbjct: 281 NVSEEDSGEYFCLASNKMGSIRHTISVRVKA--APYWLDEPKNL-ILAPGEDGRLVCRA- 336

Query: 178 EAEGTQKPTITWQRRDGVAL----PKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATI 233
              G  KPT+ W   +G  L    P    ++ G  I     +      Y+C  SNE   +
Sbjct: 337 --NGNPKPTVQW-MVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYL 393

Query: 234 VQAAQLVV 241
           +  A + V
Sbjct: 394 LANAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  125 bits (316), Expect = 3e-32
 Identities = 69/342 (20%), Positives = 110/342 (32%), Gaps = 46/342 (13%)

Query: 13  VIKKDGTLVINPVGS----DDSGLYMCEVSNGIGEPQAAQAYLNVEF-PAKVTFTPTVQY 67
           + ++ GTLVI+        +  G Y C   N  G   + +  L V   P           
Sbjct: 68  MRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVV 127

Query: 68  LPFRLQGVVQCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN-HQG 125
           +       +QC+     P+   + W          Q K +    NG L F+ V     Q 
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPV-IFWMSSSMEPIT-QDKRVSQGHNGDLYFSNVMLQDMQT 185

Query: 126 RYTCTPYNAHG-TQGSSGQMEVLVR-------KPPAFTIKPEAMYQRKV--GESVDMHCE 175
            Y+C        T        + V        + P+F         + V  G  + + C 
Sbjct: 186 DYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECI 245

Query: 176 AQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATI 233
           A    G   P I W  + G  LP ++ K       + I  +   D G Y C+ SN++ +I
Sbjct: 246 A---SGVPTPDIAW-YKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI 301

Query: 234 VQAAQLVVEGTQPH---APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD 290
                + V+   P+    P N+  +A      L      +G P      V W    G   
Sbjct: 302 RHTISVRVK-AAPYWLDEPKNLI-LAPGEDGRLVCRA--NGNPKPT---VQWMVN-GE-- 351

Query: 291 WLPIPVTPPGSTQI------TINRLTPATTYEFQVVGKNELG 326
             P+   PP   +              ++   +Q    NE G
Sbjct: 352 --PLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHG 391

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 94.2 bits (234), Expect = 4e-21
 Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 2/137 (1%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
                 +  L I  V  +DSG Y C  SN +G        + V+        P    L  
Sbjct: 268 AKFENFNKALRITNVSEEDSGEYFCLASNKMGS-IRHTISVRVKAAPYWLDEPKNLILAP 326

Query: 71  RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
              G + C    NP    V W  +   L+         +   +++F     + +  Y C 
Sbjct: 327 GEDGRLVCRANGNPKPT-VQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCN 385

Query: 131 PYNAHGTQGSSGQMEVL 147
             N HG   ++  + VL
Sbjct: 386 TSNEHGYLLANAFVSVL 402

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 92.6 bits (230), Expect = 1e-20
 Identities = 59/334 (17%), Positives = 113/334 (33%), Gaps = 35/334 (10%)

Query: 44  PQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV-QCHIKANPTFQYVTWTKDKRLLEPYQ 102
           P        +  P  +T      ++      ++ +C  K NP   +  WT++ R     +
Sbjct: 4   PMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSF-HWTRNSRFFNIAK 62

Query: 103 TKDI-VVMQNGSLLFTRVNQN----HQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIK 157
              + +  ++G+L+    +      ++G Y C   N  GT   S ++ + V K P +  +
Sbjct: 63  DPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTA-LSNRIRLQVSKSPLWPKE 121

Query: 158 PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIV-GGNITIEGLR 215
                  + G  + + C      G   P I W       + ++ RV     G++    + 
Sbjct: 122 NLDPVVVQEGAPLTLQCNP--PPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVM 179

Query: 216 RVD-FGYYECVVSNEVATIVQA---AQLVVEGTQP---HAPYNITGVATEFSVTLEWLPG 268
             D    Y C         +Q      L V  T+      P  +    T  S  +  L G
Sbjct: 180 LQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMV--LRG 237

Query: 269 --------YSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV 320
                    SG P      + WY++ G+               + I  ++   + E+  +
Sbjct: 238 MDLLLECIASGVPTPD---IAWYKKGGDLPSDKAKFENFNKA-LRITNVSEEDSGEYFCL 293

Query: 321 GKNELGDGMLSNIVVVKTKGPK-PGPPRNVSVTE 353
             N++G    +  V VK   P     P+N+ +  
Sbjct: 294 ASNKMGSIRHTISVRVKAA-PYWLDEPKNLILAP 326

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 7   SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
           +           T++          +Y C  SN  G    A A+++V
Sbjct: 356 APPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLL-ANAFVSV 401

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  149 bits (378), Expect = 6e-42
 Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 16/241 (6%)

Query: 10  TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
              +++   TL +  V   D+G Y C  SN  G+     A L V+ P +         + 
Sbjct: 53  KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDS-CSAQLGVQEPPRFIKKLEPSRIV 111

Query: 70  FRLQGVV-QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRY 127
            + +    +C I  +P  + V W KD+  ++      +  +     L    ++    G Y
Sbjct: 112 KQDEHTRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170

Query: 128 TCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTI 187
           TC  +NA G+  SS  ++V    PP F  KP  +     G  V + CE Q   GT    +
Sbjct: 171 TCEAHNAAGSASSSTSLKVKE--PPVFRKKPHPVE-TLKGADVHLECELQ---GTPPFQV 224

Query: 188 TWQRRDGVALPKN-RVKIVGGN----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           +W  +D   L    + KI+  N    I I  +   D G Y+C  SN+V +      + ++
Sbjct: 225 SW-HKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283

Query: 243 G 243
            
Sbjct: 284 A 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  114 bits (286), Expect = 6e-29
 Identities = 58/277 (20%), Positives = 102/277 (36%), Gaps = 31/277 (11%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYN 133
             +CH+      + +TW KD R + P     + +++   +L   +V +   G+YTC   N
Sbjct: 24  TFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 82

Query: 134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
             G    S Q  + V++PP F  K E     K  E     C   +  G+ +  + W  +D
Sbjct: 83  VAGKDSCSAQ--LGVQEPPRFIKKLEPSRIVKQDEHTRYEC---KIGGSPEIKVLWY-KD 136

Query: 194 GVALPKN---RVKIVGGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH- 247
              + ++   R+  V     + +  L   D G Y C   N   +   +  L V+   P  
Sbjct: 137 ETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP-PVF 195

Query: 248 --APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLP----IPVTPPGS 301
              P+ +  +     V LE      G P  +   V W++   +K  L       +     
Sbjct: 196 RKKPHPVETLKGA-DVHLECEL--QGTPPFQ---VSWHK---DKRELRSGKKYKIMSENF 246

Query: 302 TQI-TINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 337
                I  +  A   E+Q    N++G       + +K
Sbjct: 247 LTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 46/219 (21%), Positives = 75/219 (34%), Gaps = 33/219 (15%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIV---- 205
           PP F +KP ++    +GES    C      GT    ITW  +D   +      K+     
Sbjct: 5   PPFFDLKPVSV-DLALGESGTFKCHV---TGTAPIKITW-AKDNREIRPGGNYKMTLVEN 59

Query: 206 GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH---APYNITGVATEFSVT 262
              +T+  + + D G Y C  SN       +AQL V+   P           V  +    
Sbjct: 60  TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIKKLEPSRIVKQDEHTR 118

Query: 263 LEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP-------PGSTQITINRLTPATTY 315
            E      G P++K   V+WY+++       I  +             + +  L+   + 
Sbjct: 119 YECKI--GGSPEIK---VLWYKDET-----EIQESSKFRMSFVESVAVLEMYNLSVEDSG 168

Query: 316 EFQVVGKNELGDGMLSNIVVVKTKGPK-PGPPRNVSVTE 353
           ++     N  G    S  + VK   P     P  V   +
Sbjct: 169 DYTCEAHNAAGSASSSTSLKVKEP-PVFRKKPHPVETLK 206

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  149 bits (376), Expect = 4e-41
 Identities = 49/262 (18%), Positives = 86/262 (32%), Gaps = 33/262 (12%)

Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA-AQAYLNVEFPAKVTFTPTVQY 67
           E   +  +DG L + P   +DSG Y+C   N     +   +  +     A + F    Q 
Sbjct: 72  EETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQI 131

Query: 68  LPFRLQGVVQCH-----IKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN 122
           L     GV+ C       +     + + W KD  LL+    K + V     LL   V   
Sbjct: 132 LTLSTSGVLVCPDLSEFTRDKTDVK-IQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALE 190

Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVR-------KPPAFTIKPEAMYQRKVGESVDMHCE 175
             G Y C    AH  Q  +    + +R         P      + +    +G  + + C+
Sbjct: 191 DAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTI-SASLGSRLTIPCK 249

Query: 176 AQEAEGTQKPTITWQRRDGVALP-----------------KNRVKIVGGNITIEGLRRVD 218
                GT   T+ W   +   +                  +N    +   +  + + R D
Sbjct: 250 VFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTRED 309

Query: 219 FGY-YECVVSNEVATIVQAAQL 239
               ++CVV N ++       +
Sbjct: 310 LHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 98.2 bits (244), Expect = 6e-23
 Identities = 41/209 (19%), Positives = 70/209 (33%), Gaps = 17/209 (8%)

Query: 69  PFRL---QGVVQCHIKANPTFQYVTWTKD-KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQ 124
           P  L   Q         +P    +TW K+      P + +  +  Q+G+L      Q   
Sbjct: 35  PVALRCPQVPYWLWASVSPRIN-LTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDS 93

Query: 125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQE--AEGT 182
           G Y CT  NA      S ++ V      AF           +  S  + C          
Sbjct: 94  GTYVCTTRNASYCDKMSIELRVFE-NTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDK 152

Query: 183 QKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEV----ATIV 234
               I W  +D + L K+  K +      ++ +  +   D GYY CV++         I 
Sbjct: 153 TDVKIQW-YKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNIT 211

Query: 235 QAAQLVVEGTQPHAPYNITGVATEFSVTL 263
           ++ +L ++  +      I       S +L
Sbjct: 212 RSIELRIKKKKEETIPVIISPLKTISASL 240

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  151 bits (383), Expect = 9e-41
 Identities = 48/268 (17%), Positives = 76/268 (28%), Gaps = 43/268 (16%)

Query: 10  TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
                ++  TL I+    +DSG++MC  +N  G        L V     +   P +    
Sbjct: 265 GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANV-TTTLEVVDKGFINIFPMINTTV 323

Query: 70  FRLQG---VVQCHIKANPTFQYVTWTKDKRLLEPYQTK------DIVVMQNGSLLFTRVN 120
           F   G    +    +A P  ++  W    R              +  +     L  TR+ 
Sbjct: 324 FVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLK 383

Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAE 180
               G YT    N+     ++    V V   P                +  + C A    
Sbjct: 384 GTEGGTYTFLVSNSDVN--AAIAFNVYVNTKPEILTYDR-------LVNGMLQCVA---A 431

Query: 181 GTQKPTITWQRRDGV-------ALPKNRVKIVGGNI---------TIEGLRRVDFGYYEC 224
           G  +PTI W    G         LP +   +              +I+       G  EC
Sbjct: 432 GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVEC 491

Query: 225 VVSNEVATIVQAAQLVVEG-----TQPH 247
              N+V           +G       PH
Sbjct: 492 KAYNDVGKTSAYFNFAFKGNNKEQIHPH 519

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  118 bits (297), Expect = 4e-29
 Identities = 43/259 (16%), Positives = 71/259 (27%), Gaps = 34/259 (13%)

Query: 10  TRVVIKKDGTLVI-NPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
            R +      ++I +   +       C V        + +  L V         P V   
Sbjct: 160 LRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKV--RPAFKAVPVVSVS 217

Query: 69  PF---RLQG---VVQCHIKANPTFQYVTWTKDKRLLEP------YQTKDIVVMQNGSLLF 116
                  +G    V C IK   +  Y TW ++    +       +   D    +  +L  
Sbjct: 218 KASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTI 277

Query: 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE--AMYQRKVGESVDMHC 174
           +    N  G + C   N  G+   +    + V       I P          GE+VD+  
Sbjct: 278 SSARVNDSGVFMCYANNTFGSANVT--TTLEVVDKGFINIFPMINTTVFVNDGENVDLIV 335

Query: 175 EAQEAEGTQKPT-ITWQRRDGVALPKNRVKIV----------GGNITIEGLRRVDFGYYE 223
              E E   KP    W                             + +  L+  + G Y 
Sbjct: 336 ---EYEAFPKPEHQQW-IYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYT 391

Query: 224 CVVSNEVATIVQAAQLVVE 242
            +VSN       A  + V 
Sbjct: 392 FLVSNSDVNAAIAFNVYVN 410

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  108 bits (271), Expect = 1e-25
 Identities = 62/434 (14%), Positives = 122/434 (28%), Gaps = 65/434 (14%)

Query: 16  KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGV 75
           K    +     + ++G Y C   +G+        Y+ V  PAK+       Y       +
Sbjct: 78  KQNEWITEKAEATNTGKYTCTNKHGLS----NSIYVFVRDPAKLFLVDRSLYGKEDNDTL 133

Query: 76  VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN-HQGRYTCTPYNA 134
           V+C +  +P     +    +    P   +  +      ++   V +  H+    C+    
Sbjct: 134 VRCPL-TDPEVTNYSLKGCQGKPLPKDLR-FIPDPKAGIMIKSVKRAYHRLCLHCSVDQE 191

Query: 135 HGTQGSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ 190
             +   S +  + VR      P  ++   + Y  + GE   + C  ++         TW+
Sbjct: 192 GKSV-LSEKFILKVRPAFKAVPVVSVSKAS-YLLREGEEFTVTCTIKDVS--SSVYSTWK 247

Query: 191 RRDGVALPKNRVKIV---------GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
           R +     + +                +TI   R  D G + C  +N   +      L V
Sbjct: 248 RENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEV 307

Query: 242 EG-----TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE-QGNKDWLPIP 295
                    P     +     E +V L     Y   P  +  +  W    +   D     
Sbjct: 308 VDKGFINIFPMINTTVFVNDGE-NVDLI--VEYEAFPKPE--HQQWIYMNRTFTDKWEDY 362

Query: 296 VTPPGSTQI------TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNV 349
                 + I       + RL       +  +  N   +  ++  V V T       P  +
Sbjct: 363 PKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT------KPEIL 416

Query: 350 SVTEVNNGFV-----------ISW-------QPPLERASLIQYYLIKYRTDGSWKTLNKG 391
           +   + NG +           I W       Q        +    +        K + + 
Sbjct: 417 TYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQS 476

Query: 392 QIRPEENSYLGEYR 405
            I      + G   
Sbjct: 477 SIDSSAFKHNGTVE 490

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 85.9 bits (212), Expect = 4e-18
 Identities = 50/354 (14%), Positives = 97/354 (27%), Gaps = 50/354 (14%)

Query: 26  GSDDSGLYMCEV----SNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK 81
           G+  +  ++C +        G             P  +    +   +    +  + C   
Sbjct: 3   GARGAWDFLCVLLLLLRVQTGS-SQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDP 61

Query: 82  ANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141
                  V WT +               +    +  +    + G+YTCT         +S
Sbjct: 62  GF-----VKWTFEILDETNEN-------KQNEWITEKAEATNTGKYTCT---NKHGLSNS 106

Query: 142 GQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR 201
             + V VR P    +   ++Y  K      + C        +    + +   G  LPK+ 
Sbjct: 107 --IYVFVRDPAKLFLVDRSLY-GKEDNDTLVRC---PLTDPEVTNYSLKGCQGKPLPKDL 160

Query: 202 VKIV--GGNITIEGLRRV-DFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATE 258
             I      I I+ ++R        C V  E  +++    ++       A   ++     
Sbjct: 161 RFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKAS 220

Query: 259 FSVTLEWLPG--------YSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ------- 303
           + +      G                  Y  W RE           +             
Sbjct: 221 YLL----REGEEFTVTCTIKDVS--SSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQAT 274

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG 357
           +TI+      +  F     N  G   ++  + V  KG     P   +   VN+G
Sbjct: 275 LTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDG 328

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 82.8 bits (204), Expect = 4e-17
 Identities = 27/171 (15%), Positives = 41/171 (23%), Gaps = 23/171 (13%)

Query: 2   NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF 61
                  E    I+    L +  +   + G Y   VSN           + V    ++  
Sbjct: 359 WEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAA-IAFNVYVNTKPEILT 417

Query: 62  TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK---------RLLEPYQTKDIVVMQNG 112
              +        G++QC     P    + W              L    QT +      G
Sbjct: 418 YDRLV------NGMLQCVAAGFPEPT-IDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFG 470

Query: 113 S----LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
                         H G   C  YN  G   +S       +      I P 
Sbjct: 471 KLVVQSSIDSSAFKHNGTVECKAYNDVGK--TSAYFNFAFKGNNKEQIHPH 519

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  145 bits (368), Expect = 3e-40
 Identities = 60/244 (24%), Positives = 99/244 (40%), Gaps = 20/244 (8%)

Query: 17  DGTLVINPVGS-DDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKV-------TFTPTVQYL 68
              L I P+ +  D  +Y C   N +GE     A L V    ++          P ++ +
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLKVV 120

Query: 69  PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD-IVVMQNGSLLFTRVNQNHQGRY 127
                  + C    NP  + +TW KD   ++P  +   I  +++G+L      +  QG+Y
Sbjct: 121 ERTRTATMLCAASGNPDPE-ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKY 179

Query: 128 TCTPYNAHGTQGSSG-QMEVLVRK-PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP 185
            C   N+ G + SS   + V V+   P F+I P +  +   G +V++ C A    G+  P
Sbjct: 180 ECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSH-EIMPGGNVNITCVA---VGSPMP 235

Query: 186 TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245
            + W  +    L       VG N  +E     D   Y CV  + +  I   AQ+ V+   
Sbjct: 236 YVKW-MQGAEDLTPEDDMPVGRN-VLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSL- 292

Query: 246 PHAP 249
           P A 
Sbjct: 293 PKAG 296

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 92.2 bits (229), Expect = 4e-21
 Identities = 61/315 (19%), Positives = 105/315 (33%), Gaps = 35/315 (11%)

Query: 53  VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP--YQTKDIVVMQ 110
            E P +    P  Q           C    +P  + VTW K  + +    ++T +     
Sbjct: 3   GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPR-VTWNKKGKKVNSQRFETIEFDESA 61

Query: 111 NGSLLFTRVNQ-NHQGRYTCTPYNAHGTQGSSGQMEVLVR-----KPPAFTIKPEAMYQR 164
              L    +     +  Y C   N+ G      ++ VL         P   + P+ +   
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQ-LKVV 120

Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN----RVKIVG-GNITIEGLRRVDF 219
           +   +  M C A    G   P ITW + D + +  +    R+K +  G + IE     D 
Sbjct: 121 ERTRTATMLCAA---SGNPDPEITWFK-DFLPVDPSASNGRIKQLRSGALQIESSEETDQ 176

Query: 220 GYYECVVSNEVATIVQA---AQLVVEGTQPH---APYNITGVATEFSVTLEWLPGYSGGP 273
           G YECV +N       +     + V+   P     P +   +    +V +  +    G P
Sbjct: 177 GKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHE-IMPGGNVNITCVA--VGSP 233

Query: 274 DLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 333
                YV W +  G +D  P    P G   + +  +  +  Y    V  + LG       
Sbjct: 234 MP---YVKWMQ--GAEDLTPEDDMPVGRNVLELTDVKDSANY--TCVAMSSLGVIEAVAQ 286

Query: 334 VVVKTKGPKPGPPRN 348
           + VK+         +
Sbjct: 287 ITVKSLPKAGTKHHH 301

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 87.6 bits (217), Expect = 2e-19
 Identities = 30/163 (18%), Positives = 49/163 (30%), Gaps = 19/163 (11%)

Query: 4   KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
              +   R+   + G L I      D G Y C  +N  G   ++ A L V    +V    
Sbjct: 150 DPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV----RVQNVA 205

Query: 64  TVQYLPFRLQGVV-------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLF 116
               +      ++        C    +P    V W +    L P        M  G  + 
Sbjct: 206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPY-VKWMQGAEDLTPEDD-----MPVGRNVL 259

Query: 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
              +      YTC   ++ G   +  Q  + V+  P    K  
Sbjct: 260 ELTDVKDSANYTCVAMSSLGVIEAVAQ--ITVKSLPKAGTKHH 300

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  146 bits (370), Expect = 1e-38
 Identities = 81/359 (22%), Positives = 131/359 (36%), Gaps = 44/359 (12%)

Query: 18  GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQG 74
            +LVIN V   D G Y C+  N +G   A+ A L ++    P          +       
Sbjct: 61  ASLVINKVDHSDVGEYTCKAENSVGA-VASSAVLVIKERKLPPSFARKLKDVHETLGFPV 119

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYN 133
             +C I  +   Q V+W KD  LL+         +    +L   + +Q+H G+Y C+  N
Sbjct: 120 AFECRINGSEPLQ-VSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178

Query: 134 AHGTQGSSGQMEVLVRK-PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
             GT  SS ++ +   + PP F +KP ++    +GES    C      GT    ITW  +
Sbjct: 179 PLGTASSSAKLTLSEHEVPPFFDLKPVSV-DLALGESGTFKC---HVTGTAPIKITW-AK 233

Query: 193 DGVALPKN-RVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH 247
           D   +      K+        +T+  + + D G Y C  SN       +AQL V+   P 
Sbjct: 234 DNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-PPR 292

Query: 248 ---APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP------ 298
                     V  +     E      G P++K   V+WY++        I  +       
Sbjct: 293 FIKKLEPSRIVKQDEHTRYECK--IGGSPEIK---VLWYKD-ET----EIQESSKFRMSF 342

Query: 299 -PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP---GPPRNVSVTE 353
                 + +  L+   + ++     N  G    S  + VK     P     P  V   +
Sbjct: 343 VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVFRKKPHPVETLK 398

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  145 bits (368), Expect = 2e-38
 Identities = 75/361 (20%), Positives = 124/361 (34%), Gaps = 37/361 (10%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV---EFPAKVTFTPTVQY 67
              I    TL I        G Y C  SN +G    + A L +   E P      P    
Sbjct: 150 TSFIHNVATLQILQTDQSHVGQYNCSASNPLGTAS-SSAKLTLSEHEVPPFFDLKPVSVD 208

Query: 68  LPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGR 126
           L     G  +CH+      + +TW KD R + P     + +++   +L   +V +   G+
Sbjct: 209 LALGESGTFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQ 267

Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
           YTC   N  G    S Q  + V++PP F  K E     K  E     C   +  G+ +  
Sbjct: 268 YTCYASNVAGKDSCSAQ--LGVQEPPRFIKKLEPSRIVKQDEHTRYEC---KIGGSPEIK 322

Query: 187 ITWQRRDGVALPKN---RVKIVGGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
           + W  +D   + ++   R+  V     + +  L   D G Y C   N   +   +  L V
Sbjct: 323 VLW-YKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 381

Query: 242 EG----TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLP---- 293
           +      +   P+ +        V LE      G P  +   V W++   +K  L     
Sbjct: 382 KEPPVFRKK--PHPVE-TLKGADVHLECEL--QGTPPFQ---VSWHK---DKRELRSGKK 430

Query: 294 IPVTPPGSTQI-TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVT 352
             +          I  +  A   E+Q    N++G       + +K          ++S  
Sbjct: 431 YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTV 490

Query: 353 E 353
            
Sbjct: 491 V 491

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  143 bits (361), Expect = 2e-37
 Identities = 56/241 (23%), Positives = 85/241 (35%), Gaps = 20/241 (8%)

Query: 10  TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
               ++    L +  +  +DSG Y CE  N  G    +   L V+ P      P      
Sbjct: 339 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS-SSTSLKVKEPPVFRKKPHPVETL 397

Query: 70  FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGR 126
                 ++C ++  P FQ V+W KDKR L     K   +M      S+    V+    G 
Sbjct: 398 KGADVHLECELQGTPPFQ-VSWHKDKRELRS--GKKYKIMSENFLTSIHILNVDSADIGE 454

Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
           Y C   N  G+    G + +    PP F  K   +    VGE V +       EG +  +
Sbjct: 455 YQCKASNDVGSDTCVGSITLKA--PPRFVKKLSDIST-VVGEEVQLQA---TIEGAEPIS 508

Query: 187 ITWQRRDGVALPKNRVKI------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV 240
           + W  +D   + +    I          +        + G Y C + NE  T    A L 
Sbjct: 509 VAW-FKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLS 567

Query: 241 V 241
           V
Sbjct: 568 V 568

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  140 bits (354), Expect = 2e-36
 Identities = 76/326 (23%), Positives = 130/326 (39%), Gaps = 35/326 (10%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG-- 74
             TL +  V   D+G Y C  SN  G+  +  A L V+ P +         +    Q   
Sbjct: 252 TATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPRFIKKLEPSRI--VKQDEH 308

Query: 75  -VVQCHIKANPTFQYVTWTKDKRLLEP-YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY 132
              +C I  +P  + V W KD+  ++   + +   V     L    ++    G YTC  +
Sbjct: 309 TRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAH 367

Query: 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
           NA G+  SS    + V++PP F  KP  +     G  V + CE Q   GT    ++W  +
Sbjct: 368 NAAGSASSS--TSLKVKEPPVFRKKPHPVET-LKGADVHLECELQ---GTPPFQVSW-HK 420

Query: 193 DGVALPKN-RVKIV--GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG---- 243
           D   L    + KI+      +  I  +   D G Y+C  SN+V +      + ++     
Sbjct: 421 DKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRF 480

Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG--NKDWLPIPVTPPGS 301
            +     +I+ V  E  V L+      G   +    V W++++G   ++   I ++   +
Sbjct: 481 VKK--LSDISTVVGE-EVQLQA--TIEGAEPIS---VAWFKDKGEIVRESDNIWISYSEN 532

Query: 302 TQI-TINRLTPATTYEFQVVGKNELG 326
                 +R  PA   ++    KNE G
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNEAG 558

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  106 bits (266), Expect = 7e-25
 Identities = 57/294 (19%), Positives = 112/294 (38%), Gaps = 31/294 (10%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GSLLFTRVNQNHQGRYTCTPYNAH 135
           QC +   P  +   W K+   L       +    N  SL+  +V+ +  G YTC   N+ 
Sbjct: 26  QCKVDGTPEIRI-AWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSV 84

Query: 136 GTQGSSGQMEVLVRK-PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG 194
           G   SS  + +  RK PP+F  K + +++  +G  V   C      G++   ++W  +DG
Sbjct: 85  GAVASSAVLVIKERKLPPSFARKLKDVHET-LGFPVAFEC---RINGSEPLQVSW-YKDG 139

Query: 195 VALPKN-RVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP--- 246
             L  +  ++         + I    +   G Y C  SN + T   +A+L +   +    
Sbjct: 140 ELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPF 199

Query: 247 --HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG---NKDWLPIPVTPPGS 301
               P ++  +A   S T +     +G   +K   + W ++           + +    +
Sbjct: 200 FDLKPVSVD-LALGESGTFKCH--VTGTAPIK---ITWAKDNREIRPGGNYKMTLVENTA 253

Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK--PGPPRNVSVTE 353
           T +T+ ++T     ++     N  G    S  + V+   P+       +  V +
Sbjct: 254 T-LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP-PRFIKKLEPSRIVKQ 305

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 89.9 bits (223), Expect = 2e-19
 Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 7/142 (4%)

Query: 11  RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
           +  I  +    ++ I  V S D G Y C+ SN +G        + ++ P +     +   
Sbjct: 430 KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS-DTCVGSITLKAPPRFVKKLSDIS 488

Query: 68  LPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ--NGSLLFTRVNQNHQG 125
                +  +Q  I+       V W KDK  +        +       +L F+R    + G
Sbjct: 489 TVVGEEVQLQATIEGAEPIS-VAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAG 547

Query: 126 RYTCTPYNAHGTQGSSGQMEVL 147
           +YTC   N  GTQ     + VL
Sbjct: 548 KYTCQIKNEAGTQECFATLSVL 569

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  142 bits (360), Expect = 2e-38
 Identities = 49/246 (19%), Positives = 86/246 (34%), Gaps = 26/246 (10%)

Query: 9   ETRVVIKKDGTLVINPVG-SDDSGLYMCEVSNGIGEPQAAQAY---LNVEFPAKVTFTPT 64
           + + ++   G L I  VG  D    Y C   + +       A    L +  P   +   T
Sbjct: 155 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRT 214

Query: 65  VQYLPFRLQGVV------QCHIKANPTFQYVTWTKDKRLL---EPYQTKDIVVMQNGSLL 115
              +   L+ +V       C  +  P      W K        +     D V   +G+L+
Sbjct: 215 PALVQKPLELMVAHTISLLCPAQGFPAPS-FRWYKFIEGTTRKQAVVLNDRVKQVSGTLI 273

Query: 116 FTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCE 175
                    G+Y C   N+ G +     + V    P +  I P        G      C 
Sbjct: 274 IKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA--PLSAKIDPPTQT-VDFGRPAVFTC- 329

Query: 176 AQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQ 235
             +  G    T++W  +DG A+  +        + IE +++ D G Y+C V N+  +   
Sbjct: 330 --QYTGNPIKTVSW-MKDGKAIGHS-----ESVLRIESVKKEDKGMYQCFVRNDRESAEA 381

Query: 236 AAQLVV 241
           +A+L +
Sbjct: 382 SAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  121 bits (305), Expect = 8e-31
 Identities = 67/349 (19%), Positives = 109/349 (31%), Gaps = 40/349 (11%)

Query: 3   TKVGSLETRVVIKKDGTLVINPVGSDD------SGLYMCEVSNGIGEPQAAQAYLNVEFP 56
           T VG +     I  DG LV  P  ++D      + +Y C   N  G   +   ++     
Sbjct: 44  TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA 103

Query: 57  AKVTFTPTVQYLPFRLQGVVQCHIKA-NPTFQY-VTWTKDKRLL---EPYQTKDIVVMQN 111
                    +++      V++C I +    F   V+W  D+              +V+ +
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 163

Query: 112 GSLLFTRVNQN-HQGRYTCTPYNAHG-TQGSSGQMEVLVRKPPAFTIKPEAMYQR----- 164
           G L    V        Y C   +        S     LV   P  +  P           
Sbjct: 164 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLE 223

Query: 165 -KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK------NRVKIVGGNITIEGLRRV 217
             V  ++ + C AQ   G   P+  W +       K      +RVK V G + I+     
Sbjct: 224 LMVAHTISLLCPAQ---GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 280

Query: 218 DFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQ 277
           D G Y CVV+N V        L V      A  +      +F     +   Y+G P    
Sbjct: 281 DSGKYLCVVNNSVGGESVETVLTVT-APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT- 338

Query: 278 NYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 326
             V W ++          +    S  + I  +       +Q   +N+  
Sbjct: 339 --VSWMKDG-------KAIGHSESV-LRIESVKKEDKGMYQCFVRNDRE 377

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 82.7 bits (204), Expect = 2e-17
 Identities = 28/191 (14%), Positives = 58/191 (30%), Gaps = 18/191 (9%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN------QNHQGRYT 128
            ++C    NP  +   W +              +  +G L+F          + H   Y 
Sbjct: 23  EIECKASGNPMPEI-IWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYA 81

Query: 129 CTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT 188
           C   N  G+  S   + V       +       +    G S  + C            ++
Sbjct: 82  CLARNQFGSIISR-DVHVRAVVAQYYEADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVS 139

Query: 189 WQRRDG-----VALPKNRVKIV-GGNITIEGLRRVD-FGYYECVVSNEVA--TIVQAAQL 239
           W   +       A    +  ++  G + I  +   D +  Y+C   + +   T + A + 
Sbjct: 140 WHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKG 199

Query: 240 VVEGTQPHAPY 250
            +  T+P +  
Sbjct: 200 RLVITEPISSS 210

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 69.2 bits (169), Expect = 6e-13
 Identities = 32/175 (18%), Positives = 53/175 (30%), Gaps = 26/175 (14%)

Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL---PKNRVKIVG 206
           K P F  +P            ++ C+A    G   P I W R DG A+   P  R     
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKA---SGNPMPEIIWIRSDGTAVGDVPGLRQISSD 58

Query: 207 GNITIEGLRRVDF------GYYECVVSNEVATIVQAAQLVVEGTQPH---APYNITGVAT 257
           G +     R  D+        Y C+  N+  +I+     V      +          +  
Sbjct: 59  GKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRG 118

Query: 258 EFSVTLEW-LPGYSGGPDLKQNYVIWYREQGNKDWLPIP------VTPPGSTQIT 305
             S  ++  +P +          V W+ ++    +          V P G   I 
Sbjct: 119 N-SAVIKCLIPSFVADF---VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIR 169

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  140 bits (353), Expect = 2e-36
 Identities = 54/313 (17%), Positives = 99/313 (31%), Gaps = 46/313 (14%)

Query: 165 KVGESVDMHCEAQE----AEGTQKPTITWQRRDGVALPKNRVKIVG---GNITIEGLRRV 217
           ++  +    C  +E            I W + +   +PK +  I+     ++T   +  +
Sbjct: 16  QLHSNFTAVCVLKEKCMDYFHVNANYIVW-KTNHFTIPKEQYTIINRTASSVTFTDIASL 74

Query: 218 DFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEF-SVTLEWLPGYSGGPDLK 276
           +      +++            ++ G  P  P N++ +  E   +  EW  G     +  
Sbjct: 75  NIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLE-- 132

Query: 277 QNYVIWYREQGNKDWLPIPVTPPGSTQITINR-LTPATTYEFQVVGKNELGDGMLSNIVV 335
            N+ +      +K +          T  T++         E  V  +N LG     +I  
Sbjct: 133 TNFTLKSEWATHK-FADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINF 191

Query: 336 VKTKGPKPGPPRNVSVTEVNNGF---VISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQ 392
                 KP PP N+SV           ++W  P  ++ +I  Y I               
Sbjct: 192 DPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNI--------------- 236

Query: 393 IRPEENSYLGEYREQGNKDW--LPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG- 449
                     +YR +    W  +P   T    +  T+  L P T Y F++    E G G 
Sbjct: 237 ----------QYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGY 286

Query: 450 --MLSNIVVVKTK 460
               S      T 
Sbjct: 287 WSDWSEEASGITY 299

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  105 bits (262), Expect = 2e-24
 Identities = 63/404 (15%), Positives = 115/404 (28%), Gaps = 60/404 (14%)

Query: 78  CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137
           C    +    Y+ W  +   +   Q   I+     S+ FT +  +   + TC        
Sbjct: 31  CMDYFHVNANYIVWKTNHFTIPKEQYT-IINRTASSVTFTDIA-SLNIQLTCNILTFGQL 88

Query: 138 QGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCE-AQEAEGTQKPTITWQRRDGVA 196
           + +   + ++   PP    KP+ +    V E   M CE     E   +   T +      
Sbjct: 89  EQNVYGITIISGLPPE---KPKNL-SCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATH 144

Query: 197 LPKNRVKIVGGN---ITIEGLRRVDFGYYECVVSNEV--ATIVQAAQLVVEGTQPHAPYN 251
              +                              N +   T        V   +P+ P+N
Sbjct: 145 KFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHN 204

Query: 252 ITGVATEF---SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW--LPIPVTPPGSTQITI 306
           ++ + +E     + L W         +   Y I YR +    W  +P   T    +  T+
Sbjct: 205 LSVINSEELSSILKLTWTNPSIKSVII-LKYNIQYRTKDASTWSQIPPEDTASTRSSFTV 263

Query: 307 NRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGPKPGPP------RNVSVTEVNNG 357
             L P T Y F++    E G G     S      T   +P          + S T+    
Sbjct: 264 QDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRT 323

Query: 358 FVISWQ--PPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI 415
             + W+  PP E    I  Y +                             +        
Sbjct: 324 VQLVWKTLPPFEANGKILDYEVTLT--------------------------RWKSHLQNY 357

Query: 416 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
            V    +T++T+        Y   +  +N +G    + + +   
Sbjct: 358 TVN---ATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLTIPAC 396

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 94.3 bits (234), Expect = 8e-21
 Identities = 35/225 (15%), Positives = 59/225 (26%), Gaps = 34/225 (15%)

Query: 240 VVEGTQPHAPYNITGVATEFSVTLEW-LPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP 298
             +    H   ++     +  + +EW  P  S    + +  V+  +     DW     T 
Sbjct: 395 ACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTV 454

Query: 299 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGF 358
                     L  +  Y   V      G G     +    K   P     V   +V    
Sbjct: 455 --HRTYLRGNLAESKCYLITVTPVYADGPGSPE-SIKAYLKQAPPSKGPTVRTKKVGKNE 511

Query: 359 V-ISWQ--PPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI 415
             + W   P   +   I+ Y I YRT                             +   +
Sbjct: 512 AVLEWDQLPVDVQNGFIRNYTIFYRTIIG--------------------------NETAV 545

Query: 416 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
            V     T+ T++ LT  T Y  ++    + G            K
Sbjct: 546 NVDSS-HTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTTPK 589

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 82.0 bits (202), Expect = 8e-17
 Identities = 27/220 (12%), Positives = 56/220 (25%), Gaps = 40/220 (18%)

Query: 242 EGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQN-----YVIWYREQGNKDWLPIPV 296
           +        + +      +V L W       P  + N     Y +              V
Sbjct: 305 KAPSFWYKIDPSHTQGYRTVQLVWKTL----PPFEANGKILDYEVTLTR-WKSHLQNYTV 359

Query: 297 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNN 356
               +T++T+        Y   +  +N +G    + + +         P  ++     +N
Sbjct: 360 N---ATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDN 414

Query: 357 GFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416
              + W  P E    ++ Y++++                         +     DW    
Sbjct: 415 MLWVEWTTPRES---VKKYILEWCVLSD--------------------KAPCITDWQQED 451

Query: 417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
            T           L  +  Y   V      G G   +I  
Sbjct: 452 GTV--HRTYLRGNLAESKCYLITVTPVYADGPGSPESIKA 489

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  132 bits (333), Expect = 8e-36
 Identities = 40/232 (17%), Positives = 72/232 (31%), Gaps = 19/232 (8%)

Query: 16  KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGV 75
              +  I     +DSG Y C+                     +V+     +  P  L+  
Sbjct: 46  STPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALR-- 103

Query: 76  VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135
             CH   +     V + ++ +  + +         N +L   + N +H G Y C+    H
Sbjct: 104 --CHAWKDKLVYNVLYYRNGKAFKFFH-------WNSNLTILKTNISHNGTYHCSGMGKH 154

Query: 136 GTQGSSGQMEVLVR-KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG 194
               +   + V      P       +      G  V + CE +     Q+P +       
Sbjct: 155 RYTSAGISVTVKELFPAPVLNASVTS--PLLEGNLVTLSCETKLL--LQRPGLQLYFSFY 210

Query: 195 VALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA---AQLVVEG 243
           +     R +       I   RR D G Y C  + E   +++     +L V G
Sbjct: 211 MGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 71.9 bits (176), Expect = 2e-14
 Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 21/166 (12%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
            C +   P      W  +    +             S   T  + N  G Y C    +  
Sbjct: 22  HCEVLHLPGSSSTQWFLNGTATQT---------STPSYRITSASVNDSGEYRCQRGLS-- 70

Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
             G S  +++ + +          ++    GE + + C A   +      + +  R+G A
Sbjct: 71  --GRSDPIQLEIHRGWLLLQVSSRVFT--EGEPLALRCHA--WKDKLVYNVLY-YRNGKA 123

Query: 197 LPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
                      N+TI        G Y C    +         + V+
Sbjct: 124 FKFFH---WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 32/210 (15%), Positives = 61/210 (29%), Gaps = 40/210 (19%)

Query: 146 VLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV 205
           V+  +PP  ++           E+V +HCE          +  W   +G A   +     
Sbjct: 3   VITLQPPWVSVF--------QEETVTLHCEV--LHLPGSSSTQW-FLNGTATQTS----- 46

Query: 206 GGNITIEGLRRVDFGYYECVV-----SNEVATIVQAAQLVVEGTQPHAPYNITGVATEFS 260
             +  I      D G Y C       S+ +   +    L+++         +        
Sbjct: 47  TPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQ-----VSSRV--FTEGEP 99

Query: 261 VTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV 320
           + L           +    V++Y     ++          S  +TI +   +    +   
Sbjct: 100 LALRCHA--WKDKLVYN--VLYY-----RNGKAFKFFHWNSN-LTILKTNISHNGTYHCS 149

Query: 321 GKNELGDGMLSNIVVVKTKGPKPGPPRNVS 350
           G  +      S  + V  K   P P  N S
Sbjct: 150 GMGKH--RYTSAGISVTVKELFPAPVLNAS 177

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score =  129 bits (327), Expect = 1e-35
 Identities = 53/219 (24%), Positives = 86/219 (39%), Gaps = 34/219 (15%)

Query: 246 PHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P  P ++     T+ SVTL W P    G    +NY++  RE   K +  +  T    T  
Sbjct: 6   PGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTV-ATNCHKTSW 64

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQ 363
            +++L    +Y F+V+ +NE G G+ +          +P PP  +++ +V  N   +SW+
Sbjct: 65  KVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWE 124

Query: 364 PPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS 422
            P     S I  Y++                         E + +G+  W          
Sbjct: 125 KPEHDGGSRILGYIV-------------------------EMQTKGSDKW--ATCATVKV 157

Query: 423 TQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVVK 458
           T+ TI  L     Y F+V  +NE G      LS  V+ K
Sbjct: 158 TEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 28/120 (23%)

Query: 342 KPGPPRNVSVTEVNNGFV-ISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
            PGPP+++ V EV    V ++W PPL    S I+ Y++                      
Sbjct: 5   TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIV---------------------- 42

Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
              E RE   K +  +  T    T   +++L    +Y F+V+ +NE G G+ +       
Sbjct: 43  ---EKRESTRKAYSTV-ATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVK 98

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score =  129 bits (326), Expect = 2e-35
 Identities = 46/227 (20%), Positives = 78/227 (34%), Gaps = 34/227 (14%)

Query: 237 AQLVVEGTQPHAPYNITGVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIP 295
           A L    T P +P          +  +++  P  +GG  +   Y   +R  G + W    
Sbjct: 1   APLAQADT-PSSPSIDQVEPYSSTAQVQFDEPEATGGVPI-LKYKAEWRAVGEEVWHSKW 58

Query: 296 VT---PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP-GPPRNVSV 351
                      +TI  L P TTY  ++   N  G G +S     KT+  +    P+    
Sbjct: 59  YDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQ 118

Query: 352 TEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNK 410
              +   + ++     +  S I++YL++YR   S                          
Sbjct: 119 MGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSS-------------------------- 152

Query: 411 DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
           +W P    P GS  + +  L     YE  VV +N+ G    ++ V  
Sbjct: 153 EWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFR 199

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 23/123 (18%), Positives = 34/123 (27%), Gaps = 29/123 (23%)

Query: 342 KPGPPRNVSVTEVNNGFVISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
            P  P    V   ++   + +  P       I  Y                         
Sbjct: 8   TPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKA----------------------- 44

Query: 401 LGEYREQGNKDWLPIPVT---PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
             E+R  G + W               +TI  L P TTY  ++   N  G G +S     
Sbjct: 45  --EWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 102

Query: 458 KTK 460
           KT+
Sbjct: 103 KTQ 105

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 64.1 bits (156), Expect = 4e-12
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 4/104 (3%)

Query: 240 VVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPP 299
           V E + P     +       S+ +  +    GG  + ++Y++ YR   + +W P    P 
Sbjct: 107 VREPSAPKLEGQMGEDGN--SIKVNLIKQDDGGSPI-RHYLVRYRALSS-EWKPEIRLPS 162

Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
           GS  + +  L     YE  VV +N+ G    ++ V         
Sbjct: 163 GSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAHHH 206

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  134 bits (337), Expect = 5e-35
 Identities = 35/250 (14%), Positives = 73/250 (29%), Gaps = 23/250 (9%)

Query: 7   SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
             E    + K    V++ +   D     C   N +G          ++       T    
Sbjct: 183 CKEESPAVVKKEEKVLHELFGTD---IRCCARNELGR--ECTRLFTIDLNQTPQTTLPQL 237

Query: 67  YLPFRLQGVVQCH-IKANPTFQYVTWTKDKRLLEPYQTKDI-------VVMQNGSLLFTR 118
           +L       ++C  +  N  F  +TW  + + LE     ++        +++      + 
Sbjct: 238 FLKVGEPLWIRCKAVHVNHGFG-LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSS 296

Query: 119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAM-YQRKVGESVDMHCEAQ 177
           V +N  G YTC+   +      S  + ++            +  Y+    E         
Sbjct: 297 VARNDTGYYTCS---SSKHPSQSALVTIVE--KGFINATNSSEDYEIDQYEEFCFSVRF- 350

Query: 178 EAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237
             +   +   TW         + +    G +I+     +   G Y     N+ A   +  
Sbjct: 351 --KAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMF 408

Query: 238 QLVVEGTQPH 247
            L +     H
Sbjct: 409 TLNIRSGTKH 418

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  122 bits (307), Expect = 6e-31
 Identities = 47/352 (13%), Positives = 99/352 (28%), Gaps = 55/352 (15%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
            +  +   ++VI  +    +G Y+  + +           +++      T          
Sbjct: 96  DLQNRGVVSMVILKMTETQAGEYLLFIQSEATN-YTILFTVSIRNTLLYTLRRPYFRKME 154

Query: 71  RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
             Q  + C  ++ P    V W       E  + +   V++    +   +         C 
Sbjct: 155 N-QDALVCISESVPEPI-VEWVLCDSQGESCKEESPAVVKKEEKVLHEL---FGTDIRCC 209

Query: 131 PYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ 190
             N  G + +       +            ++  KVGE + + C+A          +TW 
Sbjct: 210 ARNELGRECTR---LFTIDLNQTPQTTLPQLF-LKVGEPLWIRCKA--VHVNHGFGLTW- 262

Query: 191 RRDGVALPK-----------NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239
             +  AL +           NR  I      +  + R D GYY C  S   +   Q+A +
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALV 319

Query: 240 VVEG----TQPHAPYNIT---GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWL 292
            +         ++  +          FSV       +   P ++     W   +      
Sbjct: 320 TIVEKGFINATNSSEDYEIDQYEEFCFSVR------FKAYPQIR---CTWTFSRK----- 365

Query: 293 PIPVTP---PGSTQITINRLTP--ATTYEFQVVGKNELGDGMLSNIVVVKTK 339
             P           I+           Y F    +N+         + +++ 
Sbjct: 366 SFPCEQKGLDNGYSISKFCNHKHQPGEYIFHA--ENDDAQFTKMFTLNIRSG 415

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  114 bits (286), Expect = 6e-28
 Identities = 40/343 (11%), Positives = 79/343 (23%), Gaps = 32/343 (9%)

Query: 22  INPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL---PFRLQGVVQC 78
            N      S  Y     +    P+     L  +    V     V+        LQ     
Sbjct: 19  NNDSSVGKSSSYPMVSES----PEDLGCALRPQSSGTVYEAAAVEVDVSASITLQ----V 70

Query: 79  HIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138
            + A        W      L      D+      S++  ++ +   G Y     +     
Sbjct: 71  LVDAPGNIS-CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN- 128

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
             +    V +R    +T++    Y RK+     + C    +E   +P + W   D     
Sbjct: 129 -YTILFTVSIRNTLLYTLRRP--YFRKMENQDALVC---ISESVPEPIVEWVLCDSQGES 182

Query: 199 KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATE 258
                        + L  +      C   NE+         +     P        +   
Sbjct: 183 CKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVG 242

Query: 259 FSVTLEWLPGYSGGPDLKQNYVIWYREQG---NKDWLPIPVTPPGSTQITINRLT-PATT 314
             + +                + W  E       ++  +       T I I      +  
Sbjct: 243 EPLWIR-CKAVHVNHGFG---LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVA 298

Query: 315 YE----FQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTE 353
                 +            L   +V K          +  + +
Sbjct: 299 RNDTGYYTCSSSKHPSQSALVT-IVEKGFINATNSSEDYEIDQ 340

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 79.3 bits (195), Expect = 4e-16
 Identities = 20/151 (13%), Positives = 47/151 (31%), Gaps = 12/151 (7%)

Query: 4   KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
           ++ +  T   + +     ++ V  +D+G Y C  S    +     A + +     +  T 
Sbjct: 276 EMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ----SALVTIVEKGFINATN 331

Query: 64  TVQYLPFRLQGVV--QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQ 121
           + +                KA P  +  TWT  ++       +   +    S+     ++
Sbjct: 332 SSEDYEIDQYEEFCFSVRFKAYPQIR-CTWTFSRKSFPC---EQKGLDNGYSISKFCNHK 387

Query: 122 NHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152
           +  G Y     N       +    + +R   
Sbjct: 388 HQPGEYIFHAENDDAQ--FTKMFTLNIRSGT 416

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score =  127 bits (322), Expect = 8e-35
 Identities = 39/224 (17%), Positives = 68/224 (30%), Gaps = 32/224 (14%)

Query: 240 VVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD-WLPIPVTP 298
           +V+   P+AP             + W         +  +Y I +        W       
Sbjct: 1   IVQDV-PNAPKLTGITCQADKAEIHWEQQGDNRSPI-LHYTIQFNTSFTPASWDAAYEKV 58

Query: 299 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTKGPKP-GPPRNVSVTEVNN 356
           P +    + +++P   Y F+V+  N++G    S       T+   P   P NV       
Sbjct: 59  PNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEP 118

Query: 357 G-FVISWQPPL--ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWL 413
              VISW P    E  +   +Y + ++                        R+     W 
Sbjct: 119 NNLVISWTPMPEIEHNAPNFHYYVSWK------------------------RDIPAAAWE 154

Query: 414 PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
              +       I I        Y  +VV  N+ G+  ++   VV
Sbjct: 155 NNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVV 198

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 7/100 (7%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLP---GYSGGPDLKQNYVIWYREQ-GNKDWLPIPVTPPG 300
              P N+ G      ++ + W P        P+    Y + ++       W    +    
Sbjct: 105 FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFH--YYVSWKRDIPAAAWENNNIFDWR 162

Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG 340
              I I        Y  +VV  N+ G+  ++   VV   G
Sbjct: 163 QNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSG 202

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  133 bits (335), Expect = 4e-34
 Identities = 34/265 (12%), Positives = 75/265 (28%), Gaps = 39/265 (14%)

Query: 2   NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF 61
             ++ +  T   + +     ++ V  +D+G Y C  S    +     A + +     +  
Sbjct: 274 YFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS----ALVTIVEKGFINA 329

Query: 62  TPTVQYLPFRLQGVV--QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV 119
           T + +                KA P  +  TWT  ++     Q     +    S+     
Sbjct: 330 TNSSEDYEIDQYEEFCFSVRFKAYPQIR-CTWTFSRKSFPCEQK---GLDNGYSISKFCN 385

Query: 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEA 179
           +++  G Y     N       +    + +R+ P    +           +    C    +
Sbjct: 386 HKHQPGEYIFHAENDDAQ--FTKMFTLNIRRKPQVLAE---------ASASQASC---FS 431

Query: 180 EGTQKPTITWQRRDG---------------VALPKNRVKIVGGNITIEGLRRVDFGYYEC 224
           +G   P+ TW++                      +        + T+     +     +C
Sbjct: 432 DGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKC 491

Query: 225 VVSNEVATIVQAAQLVVEGTQPHAP 249
              N + T  +   L   G  P   
Sbjct: 492 CAYNSLGTSCETILLNSPGPFPFIQ 516

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  122 bits (306), Expect = 3e-30
 Identities = 48/373 (12%), Positives = 96/373 (25%), Gaps = 58/373 (15%)

Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
           E    + K    V++           C   N +G        +++    + T        
Sbjct: 185 EESPAVVKKEEKVLHE---LFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLF--- 238

Query: 69  PFRLQG---VVQCHIK-ANPTFQYVTWTKDKRLLEP-------YQTKDIVVMQNGSLLFT 117
                G    ++C     N  F  +TW  + + LE          + +  +++      +
Sbjct: 239 --LKVGEPLWIRCKAVHVNHGFG-LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVS 295

Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE-AMYQRKVGESVDMHCEA 176
            V +N  G YTC+               V + +            Y+    E        
Sbjct: 296 SVARNDTGYYTCSSSKHPSQS-----ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRF 350

Query: 177 QEAEGTQKPTITWQRRDGVALPKNRVKIVGGN-ITIEGLRRVDFGYYECVVSNEVATIVQ 235
              +   +   TW      + P  +  +  G  I+     +   G Y     N+ A   +
Sbjct: 351 ---KAYPQIRCTW-TFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTK 406

Query: 236 AAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP 295
              L +   +P        +A   +          G P        W +           
Sbjct: 407 MFTLNIR-RKPQV------LAEASASQASCFS--DGYPLPS---WTWKKCSDKSPNCTEE 454

Query: 296 VTPPGSTQI-------------TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK 342
           +T     +              T+N       +  +    N LG    + ++     GP 
Sbjct: 455 ITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNS--PGPF 512

Query: 343 PGPPRNVSVTEVN 355
           P      +    +
Sbjct: 513 PFIQDGGTKHHHH 525

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  112 bits (280), Expect = 8e-27
 Identities = 48/349 (13%), Positives = 103/349 (29%), Gaps = 49/349 (14%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
            +  +   ++VI  +    +G Y+  + +           +++      T          
Sbjct: 96  DLQNRGVVSMVILKMTETQAGEYLLFIQSEATN-YTILFTVSIRNTLLYTLRRPYFRKME 154

Query: 71  RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
             Q  + C  ++ P    V W       E  + +   V++    +   +++       C 
Sbjct: 155 N-QDALVCISESVPEPI-VEWVLCDSQGESCKEESPAVVKKEEKV---LHELFGTDIRCC 209

Query: 131 PYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ 190
             N  G +  +    + + + P  T+    +   KVGE + + C+A          +TW 
Sbjct: 210 ARNELG-RECTRLFTIDLNQTPQTTLPQLFL---KVGEPLWIRCKA--VHVNHGFGLTW- 262

Query: 191 RRDGVALPK-----------NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL 239
             +  AL +           NR  I      +  + R D GYY C  S   +   Q+A +
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALV 319

Query: 240 VVEG----TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP 295
            +         ++  +      E          +   P ++     W   +        P
Sbjct: 320 TIVEKGFINATNSSEDYEIDQYE-EFCFS--VRFKAYPQIR---CTWTFSRK-----SFP 368

Query: 296 VTP---PGSTQITINRLTP--ATTYEFQVVGKNELGDGMLSNIVVVKTK 339
                      I+           Y F    +N+         + ++ K
Sbjct: 369 CEQKGLDNGYSISKFCNHKHQPGEYIFHA--ENDDAQFTKMFTLNIRRK 415

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  108 bits (271), Expect = 1e-25
 Identities = 40/345 (11%), Positives = 85/345 (24%), Gaps = 31/345 (8%)

Query: 22  INPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK 81
            N      S  Y     +    P+     L  +      +      +       +Q  + 
Sbjct: 19  NNDSSVGKSSSYPMVSES----PEDLGCALRPQSS-GTVYEAAAVEVDVSASITLQVLVD 73

Query: 82  ANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141
           A        W      L      D+      S++  ++ +   G Y     +       +
Sbjct: 74  APGNIS-CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN--YT 130

Query: 142 GQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR 201
               V +R    +T++    Y RK+     + C    +E   +P + W   D        
Sbjct: 131 ILFTVSIRNTLLYTLRRP--YFRKMENQDALVC---ISESVPEPIVEWVLCDSQGESCKE 185

Query: 202 VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSV 261
                     + L  +      C   NE+         +     P        +     +
Sbjct: 186 ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPL 245

Query: 262 TLE-WLPGYSGGPDLKQNYVIWYREQG---NKDWLPIPVTPPGSTQI-----TINRLTPA 312
            +       + G       + W  E       ++  +       T I      ++ +   
Sbjct: 246 WIRCKAVHVNHGFG-----LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300

Query: 313 TTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG 357
            T  +             S +V +  KG       +    E++  
Sbjct: 301 DTGYYTCSSSKHPSQ---SALVTIVEKGFINATNSSEDY-EIDQY 341

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  125 bits (316), Expect = 3e-33
 Identities = 40/247 (16%), Positives = 78/247 (31%), Gaps = 24/247 (9%)

Query: 10  TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
             +V  K    +     +  +G Y C  SNG+     +  Y+ V  PAK+       +  
Sbjct: 49  NEMVENKKNEWIQEKAEATRTGTYTCSNSNGLT----SSIYVFVRDPAKLFLVGLPLFGK 104

Query: 70  FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTC 129
                +V+C +         +  +      P     +   + G  +       H+    C
Sbjct: 105 EDSDALVRCPLTDPQV-SQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRC 163

Query: 130 TPYNAHGTQGSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP 185
                 GT   S +  + VR+     P  ++   + +  K G++  + C  +  + +   
Sbjct: 164 AAQR-DGTWLHSDKFTLKVREAIKAIPVVSVPETS-HLLKKGDTFTVVCTIK--DVSTSV 219

Query: 186 TITWQRRDGVALPKNRVKIVG-----------GNITIEGLRRVDFGYYECVVSNEVATIV 234
              W + +       +VK                +TI   R  D G + C  +N   +  
Sbjct: 220 NSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSAN 279

Query: 235 QAAQLVV 241
               L V
Sbjct: 280 VTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 78.2 bits (192), Expect = 2e-16
 Identities = 29/177 (16%), Positives = 51/177 (28%), Gaps = 18/177 (10%)

Query: 89  VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
           V WT      E  + K          +  +      G YTC+         SS  + V V
Sbjct: 40  VRWTFKTYFNEMVENKK------NEWIQEKAEATRTGTYTCS---NSNGLTSS--IYVFV 88

Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--G 206
           R P    +    ++  K      + C        Q    +    DG +LP +   +    
Sbjct: 89  RDPAKLFLVGLPLF-GKEDSDALVRCPL---TDPQVSQYSLIECDGKSLPTDLTFVPNPK 144

Query: 207 GNITIEGLRRV-DFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVT 262
             ITI+ ++R        C    +   +      +       A   ++   T   + 
Sbjct: 145 AGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLK 201

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 69.0 bits (168), Expect = 3e-13
 Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 12/146 (8%)

Query: 16  KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV----EFPAKVTFTPTVQYLPFR 71
           K G  + N   +       C          + +  L V    +    V+   T   L   
Sbjct: 144 KAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKG 203

Query: 72  LQGVVQCHIKANPTFQYVTWTKD-KRLLEPYQTKDIVVMQ-------NGSLLFTRVNQNH 123
               V C IK   T     W K   +     Q K     +         +L  +    + 
Sbjct: 204 DTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDD 263

Query: 124 QGRYTCTPYNAHGTQGSSGQMEVLVR 149
            G + C   N  G+   +  ++V+ +
Sbjct: 264 SGVFMCYANNTFGSANVTTTLKVVEK 289

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 11/84 (13%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNIT 210
           PP+       +     G+++ + C            + W  +         V+       
Sbjct: 12  PPSIHPAQSELIVE-AGDTLSLTCIDP-------DFVRWTFKTY---FNEMVENKKNEWI 60

Query: 211 IEGLRRVDFGYYECVVSNEVATIV 234
            E       G Y C  SN + + +
Sbjct: 61  QEKAEATRTGTYTCSNSNGLTSSI 84

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  126 bits (317), Expect = 6e-33
 Identities = 40/245 (16%), Positives = 73/245 (29%), Gaps = 20/245 (8%)

Query: 16  KDGTLVINPVG-SDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG 74
           K+G L I     +D    Y+C V+   G+        ++  P              +   
Sbjct: 87  KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGI 146

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
            + C I     +  +TW K+ + L    TK        +L+         GRY C  +  
Sbjct: 147 DLYCGILYAKHYNNITWYKNNQELIIDGTK--YSQSGQNLIIHNPELEDSGRYDCYVHYD 204

Query: 135 HGTQGSSGQM------EVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ-EAEGTQKPTI 187
                +   +       V+  +   F +  +      +GE  ++ C A   +       I
Sbjct: 205 DVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLI 264

Query: 188 TWQRRDGVALP---------KNRVKIVGGNITIEGLRRVDFGY-YECVVSNEVATIVQAA 237
            W+   G  +           +   I    +  E +     G  Y C   N         
Sbjct: 265 DWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTT 324

Query: 238 QLVVE 242
            +V+E
Sbjct: 325 TVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 91.4 bits (226), Expect = 1e-20
 Identities = 50/291 (17%), Positives = 82/291 (28%), Gaps = 29/291 (9%)

Query: 67  YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN-HQG 125
                         + N     V W K  +   P   +    ++NG L       N    
Sbjct: 48  SAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR----VKNGDLWIANYTSNDSHR 103

Query: 126 RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP 185
           RY CT    +G     G +   +RKPP+   +   +        +D++C           
Sbjct: 104 RYLCTVTTKNGDC-VQGIVRSHIRKPPSCIPETYELGTH-DKYGIDLYCGI--LYAKHYN 159

Query: 186 TITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
            ITW  ++   L  +  K    G N+ I      D G Y+C V  +   I     +    
Sbjct: 160 NITW-YKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCK 218

Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYS--------GGPDLKQNYVI-WYREQGNKDWLPI 294
                P             +    G              L  + +I W    G    L  
Sbjct: 219 ILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDF 278

Query: 295 PVTPPGSTQ-------ITINRLTPATT-YEFQVVGKNELGDGMLSNIVVVK 337
            V    ++        +    +T       +   G N   D  L+  VV++
Sbjct: 279 GVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 64.9 bits (157), Expect = 1e-11
 Identities = 22/158 (13%), Positives = 45/158 (28%), Gaps = 18/158 (11%)

Query: 7   SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAA-----QAYLNVEFPAKVTF 61
            ++     +    L+I+    +DSG Y C V       +          L V       F
Sbjct: 171 IIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRF 230

Query: 62  TPTVQYLPFRLQG---VVQCHIKANPTFQY---VTWTKDKRLLEPYQTKDIVV------M 109
              +        G    + C   +         + W      +         +      +
Sbjct: 231 KLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGI 290

Query: 110 QNGSLLFTRVNQNHQGR-YTCTPYNAHGTQGSSGQMEV 146
              +L F  V + + G  YTC  +N +  +  +  + +
Sbjct: 291 TEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 51.8 bits (123), Expect = 2e-07
 Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 16/213 (7%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQE------AEGTQKPTITWQRRDGVALPKNRVKI 204
            P+            +GE     C   E          +   + W++      P NR ++
Sbjct: 28  NPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNR-RV 86

Query: 205 VGGNITIEGLRRVDFG-YYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
             G++ I      D    Y C V+ +    VQ          P        + T     +
Sbjct: 87  KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGI 146

Query: 264 EWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTP--ATTYEFQVVG 321
           +   G         N + WY+            +  G   + I+      +  Y+  V  
Sbjct: 147 DLYCGILYAK--HYNNITWYKNNQELIIDGTKYSQSGQN-LIIHNPELEDSGRYDCYV-- 201

Query: 322 KNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEV 354
             +    + ++IVV + K     P ++     +
Sbjct: 202 HYDDV-RIKNDIVVSRCKILTVIPSQDHRFKLI 233

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  130 bits (328), Expect = 1e-32
 Identities = 75/470 (15%), Positives = 128/470 (27%), Gaps = 60/470 (12%)

Query: 16  KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFT---PTVQYLPFRL 72
               L I+    +   +    +++G     A      +  P   T          +    
Sbjct: 121 NRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQ 180

Query: 73  QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS---LLFTRVNQNHQGRYTC 129
               QC            W +   + +    +  V                +   G+Y C
Sbjct: 181 FATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRC 240

Query: 130 TPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTI-- 187
                 G  G S   E++V++PP     P+          + ++  +   +G   P +  
Sbjct: 241 MIRTEGGV-GISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDG---PIVAR 296

Query: 188 TWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVV-------------SNEVATIV 234
             +         +R  +   +  I  L       YE  V                + T  
Sbjct: 297 EVEYCTASGSWNDRQPVDSTSYKIGHLDP--DTEYEISVLLTRPGEGGTGSPGPALRTRT 354

Query: 235 QAAQLVVEGTQPHAPYNITGVATE-FSVTLEWL-PGYSGGPDLKQNYVIWYREQGN---- 288
           + A           P  +  V  +   +T+ W   GY+       N  + Y  Q      
Sbjct: 355 KCA------DPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQ 408

Query: 289 KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
                   T     Q TI  L+P T    +++  N  G    S  ++V+T    PG    
Sbjct: 409 VREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRK-ESQELIVQTDEDLPGAVPT 467

Query: 349 VSVTEVNNGFVI--SWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYRE 406
            S+        I   W+ P +   +I  Y I Y+   S+        +    S LG    
Sbjct: 468 ESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGN--- 524

Query: 407 QGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
                           T      L P TTY F +      G G  +    
Sbjct: 525 ---------------ETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQF 559

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 93.7 bits (232), Expect = 1e-20
 Identities = 35/245 (14%), Positives = 56/245 (22%), Gaps = 27/245 (11%)

Query: 242 EGTQPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP----- 295
           E      P     G   E  + L+W         +   Y I Y+   + D          
Sbjct: 459 EDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVI-TLYEITYKAVSSFDPEIDLSNQSG 517

Query: 296 --VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTE 353
                   T      L P TTY F +      G G  +             P   +    
Sbjct: 518 RVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYELETPL 577

Query: 354 VNNG--FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKD 411
                   +  +P   R + +  Y I    +   +T    +I       +          
Sbjct: 578 NQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNS 637

Query: 412 WLPI-----PVTPPGSTQITINR-----------LTPATTYEFQVVGKNELGDGMLSNIV 455
                      +   +   TI             L P  +Y       +        + V
Sbjct: 638 QYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCV 697

Query: 456 VVKTK 460
            V TK
Sbjct: 698 QVATK 702

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 88.7 bits (219), Expect = 7e-19
 Identities = 43/307 (14%), Positives = 79/307 (25%), Gaps = 55/307 (17%)

Query: 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVV 226
              ++++ +             W          NR       + I       +     V+
Sbjct: 91  PGLLNVYVKV---NNGPLGNPIWNISGDPTRTWNR-----AELAISTFWPNFYQVIFEVI 142

Query: 227 SNEVATIVQAAQLVVEGTQPHAPYNITG---VATEFSVTLEWLPGYSGGPDLKQNYVIWY 283
           ++     +   ++ V G       +      V         +     G           +
Sbjct: 143 TSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVA---GDRLW 199

Query: 284 REQGNKDWLP-----IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
            +  +    P     +  +        +   T     +++ + + E G G+ SN   +  
Sbjct: 200 LQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI-SNYAELVV 258

Query: 339 KGPKPGPPRNVSVTEVNNGFV-ISWQPPLERA-SLIQYYLIKYRT-DGSWKTLNKGQIRP 395
           K P P P     +  V   ++ I            I    ++Y T  GSW          
Sbjct: 259 KEP-PVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWND-------- 309

Query: 396 EENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN--ELGDGMLSN 453
                                  P  ST   I  L P T YE  V+     E G G    
Sbjct: 310 ---------------------RQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGP 348

Query: 454 IVVVKTK 460
            +  +TK
Sbjct: 349 ALRTRTK 355

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 21/144 (14%), Positives = 33/144 (22%), Gaps = 42/144 (29%)

Query: 245 QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI---------- 294
            P          T+ +VT+   P +S G  +   Y I   E+  +               
Sbjct: 568 MPAYELETPLNQTDNTVTVMLKPAHSRGAPV-SVYQIVVEEERPRRTKKTTEILKCYPVP 626

Query: 295 --------------------PVTPPGSTQITINR-----------LTPATTYEFQVVGKN 323
                                 +   +   TI             L P  +Y       +
Sbjct: 627 IHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAAS 686

Query: 324 ELGDGMLSNIVVVKTKGPKPGPPR 347
                   + V V TKG     P 
Sbjct: 687 RANGETKIDCVQVATKGAATPKPV 710

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score =  125 bits (315), Expect = 1e-32
 Identities = 57/318 (17%), Positives = 102/318 (32%), Gaps = 46/318 (14%)

Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRVKIVG 206
            R+ PA  +    +     G+SV + C   E E     T+ W  R   A    +R   +G
Sbjct: 3   PRRCPAQEVARGVLTSL-PGDSVTLTCPGVEPEDN--ATVHWVLRKPAAGSHPSRWAGMG 59

Query: 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEF--SVTLE 264
             + +  ++  D G Y C  +   A  V    L+V+   P     ++        +V  E
Sbjct: 60  RRLLLRSVQLHDSGNYSCYRAGRPAGTVH---LLVDV--PPEEPQLSCFRKSPLSNVVCE 114

Query: 265 WLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINR------LTPATTYEFQ 318
           W P  +         V+  R+  N            S +              ++ Y   
Sbjct: 115 WGPRSTPSLTT--KAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVS 172

Query: 319 VVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNN---GFVISWQPPLERASLIQYY 375
           +   + +G               +P PP N++VT V        ++WQ P    S   +Y
Sbjct: 173 MCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNS--SFY 230

Query: 376 LIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATT 435
            +++            ++R         YR + +K +    V         I+       
Sbjct: 231 RLRF------------ELR---------YRAERSKTFTTWMVKDL-QHHCVIHDAWSGLR 268

Query: 436 YEFQVVGKNELGDGMLSN 453
           +  Q+  + E G G  S 
Sbjct: 269 HVVQLRAQEEFGQGEWSE 286

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 78.0 bits (191), Expect = 4e-16
 Identities = 47/301 (15%), Positives = 89/301 (29%), Gaps = 35/301 (11%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
            + C          V W   K     + ++   +     LL   V  +  G Y+C     
Sbjct: 25  TLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM--GRRLLLRSVQLHDSGNYSC----- 77

Query: 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT--ITWQRR 192
           +     +G + +LV  PP        +   +     ++ CE          T  +   R+
Sbjct: 78  YRAGRPAGTVHLLVDVPPE----EPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRK 133

Query: 193 DGVALPKNRVKIV------GGNITIEGLRRVDFGYYE--CVVSNEVATIVQAAQLV--VE 242
              +  ++  +                +   D  +Y     V++ V +     Q      
Sbjct: 134 FQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCG 193

Query: 243 GTQPHAPYNITGVATEFS---VTLEWLP---GYSGGPDLKQNYVIWYREQGNKDWLPIPV 296
             QP  P NIT  A   +   +++ W       S    L+  + + YR + +K +    V
Sbjct: 194 ILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLR--FELRYRAERSKTFTTWMV 251

Query: 297 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN---IVVVKTKGPKPGPPRNVSVTE 353
                    I+       +  Q+  + E G G  S      +         PP    V+ 
Sbjct: 252 KDL-QHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVST 310

Query: 354 V 354
            
Sbjct: 311 P 311

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  129 bits (325), Expect = 3e-32
 Identities = 50/257 (19%), Positives = 89/257 (34%), Gaps = 34/257 (13%)

Query: 15  KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG 74
           K      +    ++ S LY CE  N +G  +      +V    ++T  P +Q        
Sbjct: 510 KNKTVSTLVIQAANVSALYKCEAVNKVGRGER-VISFHVTRGPEITLQPDMQPTEQE-SV 567

Query: 75  VVQCHIKANPTFQYVTWTKD----------------KRLLEPYQTKDIVVMQNGS----- 113
            + C    +     +TW K                  + L+     +  +  N +     
Sbjct: 568 SLWCTADRSTFEN-LTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626

Query: 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK--PPAFTIKPEAMYQRKVGESVD 171
           +     +   QG Y C   +    +      ++ V +   P  T   E      +GES++
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTS-IGESIE 685

Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALPKN---RVKIVGGNITIEGLRRVDFGYYECVVSN 228
           + C A    G   P I W  +D   L ++    +K    N+TI  +R+ D G Y C   +
Sbjct: 686 VSCTA---SGNPPPQIMW-FKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACS 741

Query: 229 EVATIVQAAQLVVEGTQ 245
            +      A  ++EG Q
Sbjct: 742 VLGCAKVEAFFIIEGAQ 758

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  125 bits (315), Expect = 5e-31
 Identities = 45/255 (17%), Positives = 87/255 (34%), Gaps = 27/255 (10%)

Query: 10  TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
            R+         I       +G+  CE        Q+   Y+ V    ++     V   P
Sbjct: 175 NRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQS-IMYIVVVVGYRI---YDVVLSP 230

Query: 70  FRLQGV-------VQCHIKANPTFQYVTWTKDKRLLEP-----------YQTKDIVVMQN 111
                +       + C  +       + +  +    +             Q+   +    
Sbjct: 231 SHGIELSVGEKLVLNCTARTELNVG-IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL 289

Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
            +L    V ++ QG YTC   +   T+ +S  + V  +   AF    E++ +  VGE V 
Sbjct: 290 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVR 349

Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA 231
           +     +  G   P I W  ++G+ L  N     G  +TI  +   D G Y  +++N ++
Sbjct: 350 IPA---KYLGYPPPEIKW-YKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPIS 405

Query: 232 TIVQAAQLVVEGTQP 246
              Q+  + +    P
Sbjct: 406 KEKQSHVVSLVVYVP 420

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  124 bits (313), Expect = 1e-30
 Identities = 56/400 (14%), Positives = 106/400 (26%), Gaps = 73/400 (18%)

Query: 18  GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG--- 74
            TL I+ V   D GLY C  S+G+   +    ++ V     V F   ++ L     G   
Sbjct: 290 STLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEKPFVAFGSGMESLVEATVGERV 348

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
            +       P  + + W K+   LE     +  +     L    V++   G YT    N 
Sbjct: 349 RIPAKYLGYPPPE-IKWYKNGIPLES----NHTIKAGHVLTIMEVSERDTGNYTVILTNP 403

Query: 135 HGTQGSSGQMEVLVRKPPAFTIKPEA--MYQRKVGESVDMHCEAQEAEGTQKP-TITWQR 191
              +  S  + ++V  PP    K     +   + G +  + C          P  I W  
Sbjct: 404 ISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTC---TVYAIPPPHHIHWYW 460

Query: 192 RDG---------------------------------VALPKNRVKIVGGN----ITIEGL 214
           +                                   + + KN+  ++ G      T+   
Sbjct: 461 QLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQ 520

Query: 215 RRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLE---------- 264
                  Y+C   N+V    +     V                + SV+L           
Sbjct: 521 AANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFEN 580

Query: 265 ---WLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI----TINRLTPATTYEF 317
              +  G    P           +  +  W         ST       +   +     ++
Sbjct: 581 LTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDY 640

Query: 318 QVVGKNELGDGMLSNIVVVKTKGPKP----GPPRNVSVTE 353
             + ++         +  +           G   N + + 
Sbjct: 641 VCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSI 680

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  122 bits (308), Expect = 4e-30
 Identities = 68/417 (16%), Positives = 119/417 (28%), Gaps = 97/417 (23%)

Query: 8   LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA-AQAYLNVEFPAKVTFTPTVQ 66
           LE+   IK    L I  V   D+G Y   ++N I + +      L V  P ++     + 
Sbjct: 371 LESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLIS 430

Query: 67  YLPFRLQG---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS---------- 113
            +     G    + C + A P   ++ W          +    V + N            
Sbjct: 431 PVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVED 490

Query: 114 ------------------------LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149
                                           N    Y C   N  G       +   V 
Sbjct: 491 FQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR--GERVISFHVT 548

Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG--- 206
           + P  T++P+   Q    ESV + C A   + +    +TW +     LP +  ++     
Sbjct: 549 RGPEITLQPDM--QPTEQESVSLWCTA---DRSTFENLTWYKLGPQPLPIHVGELPTPVC 603

Query: 207 ---------------------GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245
                                  + ++     D G Y C+  +            +   +
Sbjct: 604 KNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLE 663

Query: 246 PHAPY------NIT---GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP- 295
             AP       N T   G + E S T       SG P  +   ++W+     KD   +  
Sbjct: 664 RVAPTITGNLENQTTSIGESIEVSCTA------SGNPPPQ---IMWF-----KDNETLVE 709

Query: 296 ----VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
               V   G+  +TI R+       +     + LG   +    +++    K    R 
Sbjct: 710 DSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERT 766

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  112 bits (282), Expect = 9e-27
 Identities = 70/485 (14%), Positives = 135/485 (27%), Gaps = 66/485 (13%)

Query: 18  GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG--- 74
            TL I  V  +D+G Y C              Y+       +        + +  +    
Sbjct: 86  KTLTIPKVIGNDTGAYKCFYRETDLA-SVIYVYVQDYRSPFIASVSDQHGVVYITENKNK 144

Query: 75  --VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY 132
             V+ C    +     +     ++   P   + I               ++ G   C   
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKRFVPDGNR-ISWDSKKGFTIPSYMISYAGMVFCEAK 203

Query: 133 NAHGTQGSSGQMEVLVR-KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ- 190
               +  S   + V+V  +     + P    +  VGE + ++C    A       I +  
Sbjct: 204 INDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC---TARTELNVGIDFNW 260

Query: 191 -------------RRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA 237
                         RD      + +K     +TI+G+ R D G Y C  S+ + T   + 
Sbjct: 261 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNST 320

Query: 238 QLVVEG----TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLP 293
            + V             ++        V +     Y G P  +   + WY     K+ +P
Sbjct: 321 FVRVHEKPFVAFGSGMESLVEATVGERVRIPAK--YLGYPPPE---IKWY-----KNGIP 370

Query: 294 IP---VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK--PGPPRN 348
           +        G   +TI  ++   T  + V+  N +     S++V +    P         
Sbjct: 371 LESNHTIKAGHV-LTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLI 429

Query: 349 VSVTEVNNG---------------FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQI 393
             V     G                 I W   LE     +       T+       +   
Sbjct: 430 SPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVE 489

Query: 394 RPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
             +  + +   + Q         +     T  T+       +  ++    N++G G    
Sbjct: 490 DFQGGNKIEVNKNQ------FALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVI 543

Query: 454 IVVVK 458
              V 
Sbjct: 544 SFHVT 548

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 96.4 bits (239), Expect = 2e-21
 Identities = 41/355 (11%), Positives = 86/355 (24%), Gaps = 43/355 (12%)

Query: 29  DSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQY 88
              L++C  +            ++++ P     +     L  +    +Q   +       
Sbjct: 8   AVALWLCVETRAASV---GLPSVSLDLP---RLSIQKDILTIKANTTLQITCRGQRD--- 58

Query: 89  VTWTKDKRLLEPYQTKDIVVMQNG----SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM 144
           + W          Q  ++    +G    +L   +V  N  G Y C              +
Sbjct: 59  LDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118

Query: 145 EVLVRKPPAFTIKPEAMYQRKV--GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV 202
           +       A       +        ++V + C       +        R        +  
Sbjct: 119 QDYRSPFIASVSDQHGVVYITENKNKTVVIPC---LGSISNLNVSLCARYPEKRFVPDGN 175

Query: 203 KIV---GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG----- 254
           +I        TI        G   C       +      +VV          ++      
Sbjct: 176 RISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIE 235

Query: 255 ------------VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
                         TE +V +++   Y       +  V    +  +             +
Sbjct: 236 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS-----EMKKFLS 290

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG 357
            +TI+ +T +    +     + L     S  V V  K          S+ E   G
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVG 345

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
            V+   +  L I  V  +D GLY C+  + +G     +A+  +E   + T      + 
Sbjct: 713 IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGC-AKVEAFFIIEGAQEKTNLERTHHH 769

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score =  123 bits (308), Expect = 6e-32
 Identities = 57/316 (18%), Positives = 103/316 (32%), Gaps = 44/316 (13%)

Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQE----AEGTQKPTITWQRRDGVALPKNRVKIVGG 207
           P   I PE+   + +  +    C  +E            I W + +   +PK +  I+  
Sbjct: 5   PCGYISPESPVVQ-LHSNFTAVCVLKEKCMDYFHVNANYIVW-KTNHFTIPKEQYTIINR 62

Query: 208 N---ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEF-SVTL 263
               +T   +  ++      +++            ++ G  P  P N++ +  E   +  
Sbjct: 63  TASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRC 122

Query: 264 EWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINR-LTPATTYEFQVVGK 322
           EW  G     +   N+ +      +K +          T  T++         E  V  +
Sbjct: 123 EWDGGRETHLET--NFTLKSEWATHK-FADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAE 179

Query: 323 NELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGF---VISWQPPLERASLIQYYLIKY 379
           N LG     +I        KP PP N+SV           ++W  P  ++ +I  Y I+Y
Sbjct: 180 NALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQY 239

Query: 380 RTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE 437
           RT  +  W  +                             T    +  T+  L P T Y 
Sbjct: 240 RTKDASTWSQIP-------------------------PEDTASTRSSFTVQDLKPFTEYV 274

Query: 438 FQVVGKNELGDGMLSN 453
           F++    E G G  S+
Sbjct: 275 FRIRCMKEDGKGYWSD 290

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 46.7 bits (110), Expect = 7e-06
 Identities = 23/202 (11%), Positives = 47/202 (23%), Gaps = 33/202 (16%)

Query: 259 FSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATT-YEF 317
           F+              +  NY++W             +    ++ +T   +         
Sbjct: 22  FTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTC 81

Query: 318 QVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYL 376
            ++   +L   +    ++    G  P  P+N+S            W    E   L   + 
Sbjct: 82  NILTFGQLEQNVYGITIIS---GLPPEKPKNLSCIVNEGKKMRCEWDGGRE-THLETNFT 137

Query: 377 IKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINR-LTPATT 435
           +K                                 +          T  T++        
Sbjct: 138 LKSEWATH--------------------------KFADCKAKRDTPTSCTVDYSTVYFVN 171

Query: 436 YEFQVVGKNELGDGMLSNIVVV 457
            E  V  +N LG     +I   
Sbjct: 172 IEVWVEAENALGKVTSDHINFD 193

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score =  119 bits (301), Expect = 1e-31
 Identities = 51/205 (24%), Positives = 74/205 (36%), Gaps = 20/205 (9%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN---RVKIVGG 207
            P     P A+Y    G  V++ CE          TI+W  RDG  LP +    +KI   
Sbjct: 19  APKLQ-GPVAVY-TWEGNQVNITCEVF---AYPSATISW-FRDGQLLPSSNYSNIKIYNT 72

Query: 208 N----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
                + +      DFG Y C   N +        LV   T P +P          +  +
Sbjct: 73  PSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT-PSSPSIDQVEPYSSTAQV 131

Query: 264 EWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP---PGSTQITINRLTPATTYEFQV 319
           ++  P  +GG  +   Y   +R  G + W               +TI  L P TTY  ++
Sbjct: 132 QFDEPEATGGVPI-LKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL 190

Query: 320 VGKNELGDGMLSNIVVVKTKGPKPG 344
              N  G G +S     KT+ P  G
Sbjct: 191 AALNGKGLGEISAASEFKTQ-PVQG 214

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 71.4 bits (175), Expect = 1e-14
 Identities = 42/247 (17%), Positives = 67/247 (27%), Gaps = 43/247 (17%)

Query: 220 GYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNY 279
             Y    S  V          ++G     P  +        V +         P      
Sbjct: 1   ATYAAASSALVPRGSHMYAPKLQG-----PVAVYTWEGN-QVNITCE--VFAYPSAT--- 49

Query: 280 VIWYR-----EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV 334
           + W+R        N   + I  TP  S  + +   +      +     N +G   L  I+
Sbjct: 50  ISWFRDGQLLPSSNYSNIKIYNTPSASY-LEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108

Query: 335 VVKTKGPKPGPPRNVSVTEVNNGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQI 393
           V       P  P    V   ++   + +  P       I  Y  ++R  G          
Sbjct: 109 VQADT---PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE--------- 156

Query: 394 RPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
                       E  +  W            +TI  L P TTY  ++   N  G G +S 
Sbjct: 157 ------------EVWHSKWYDAKEAS-MEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 203

Query: 454 IVVVKTK 460
               KT+
Sbjct: 204 ASEFKTQ 210

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 31  GLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVT 90
             Y    S  +             +  K+   P   Y     Q  + C + A P+   ++
Sbjct: 1   ATYAAASSALVPRGS-------HMYAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSAT-IS 51

Query: 91  WTKDKRLLEPYQTKDIVVMQNGS---LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL 147
           W +D +LL      +I +    S   L  T  ++N  G Y CT  N  G    S +  ++
Sbjct: 52  WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ--ESLEFILV 109

Query: 148 VRKPPA 153
               P+
Sbjct: 110 QADTPS 115

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score =  119 bits (300), Expect = 1e-31
 Identities = 40/235 (17%), Positives = 71/235 (30%), Gaps = 43/235 (18%)

Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI--------- 294
           T P  P N+T + ++ SV L W+   + G  +    V +      K+W            
Sbjct: 2   TYPPTPPNVTRL-SDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60

Query: 295 --PVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGPK--PGPPR 347
                   S   ++  L P  TY F+++      D      S    ++          P 
Sbjct: 61  KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120

Query: 348 NVSVTEVNNGFV-ISWQPPLE-RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYR 405
            + + E +   V + W    +    LI  Y   YR   S                     
Sbjct: 121 LLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSS--------------------- 159

Query: 406 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
                ++    +    +    I  L  AT YEF++   +       S +   +T+
Sbjct: 160 ---AGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQ 211

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 72.5 bits (178), Expect = 6e-15
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 4/100 (4%)

Query: 246 PHAPYNITGVA-TEFSVTLEW-LPGYSGGPDLKQNYVIWYREQG-NKDWLPIPVTPPGST 302
              P  +     +E +V L W L   +    +   Y  +YR      ++    +    + 
Sbjct: 116 MPVPELLEIEEYSETAVVLHWSLASDADEHLI-TGYYAYYRPSSSAGEYFKATIEGAHAR 174

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK 342
              I  L  AT YEF++   +       S +   +T+ PK
Sbjct: 175 SFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score =  119 bits (299), Expect = 2e-31
 Identities = 47/224 (20%), Positives = 76/224 (33%), Gaps = 34/224 (15%)

Query: 246 PHAPYNITGVA-TEFSVTLEW----LPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPG 300
              P  +     +  ++ + W    LP +    D +  Y + ++     +          
Sbjct: 5   MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRY-YTVRWKTNIPANTKYK-NANAT 62

Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPG-PPRNVSVTEVNNG-- 357
           +    +  L P T YEF V+          S      T    P  PP++V+V        
Sbjct: 63  TLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPK 122

Query: 358 -FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416
             +++WQPP E    I  Y+I Y TD + +                        DW+  P
Sbjct: 123 TIIVNWQPPSEANGKITGYIIYYSTDVNAEI----------------------HDWVIEP 160

Query: 417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
           V         I  LT  T Y F++  +N  G G +S  V  +T 
Sbjct: 161 V-VGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTP 203

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  120 bits (303), Expect = 3e-31
 Identities = 39/244 (15%), Positives = 67/244 (27%), Gaps = 19/244 (7%)

Query: 10  TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKV-TFTPTVQYL 68
           T         L  N     ++G Y C           A  +L V+ PA+          +
Sbjct: 43  TLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGS-AAIHLYVKDPARPWNVLAQEVVV 101

Query: 69  PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT 128
                 ++ C +        V+  + +       T              R        Y 
Sbjct: 102 FEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTN-YSFSPWHGFTIHRAKFIQSQDYQ 160

Query: 129 CTPYNAHGTQGSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184
           C+         S   + + V+K    PPA T+ P     R  GE+  + C A        
Sbjct: 161 CSALMGGRKVMSI-SIRLKVQKVIPGPPALTLVPAE-LVRIRGEAAQIVCSAS---SVDV 215

Query: 185 PTITWQRRDGVALPKNRVKIVGGN-------ITIEGLRRVDFGYYECVVSNEVATIVQAA 237
               + + +   L   +      N       + ++ +     G Y CV SN       + 
Sbjct: 216 NFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSM 275

Query: 238 QLVV 241
              V
Sbjct: 276 FFRV 279

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 87.7 bits (217), Expect = 2e-19
 Identities = 27/232 (11%), Positives = 57/232 (24%), Gaps = 25/232 (10%)

Query: 89  VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
           V W           +       +  L        + G Y CT         ++    + V
Sbjct: 32  VEWDGPPSPHWTLYSDG----SSSILSTNNATFQNTGTYRCTEPGDPLGGSAAI--HLYV 85

Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--G 206
           + P                +   + C   +     +  ++  R  G  L ++        
Sbjct: 86  KDPARPWNVLAQEVVVFEDQDALLPCLLTD--PVLEAGVSLVRVRGRPLMRHTNYSFSPW 143

Query: 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWL 266
              TI   + +    Y+C        ++  +  +        P  +T V  E        
Sbjct: 144 HGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIR--- 200

Query: 267 PGY--------SGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLT 310
            G         S       N+ ++ +    K  +P       +    +  L 
Sbjct: 201 -GEAAQIVCSASSVD---VNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLN 248

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 84.6 bits (209), Expect = 2e-18
 Identities = 25/158 (15%), Positives = 42/158 (26%), Gaps = 9/158 (5%)

Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE----FPAKVTFTPT 64
            T           I+      S  Y C    G  +  +    L V+     P  +T  P 
Sbjct: 135 HTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPA 194

Query: 65  VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL---EPYQTKDIVVMQNGSLLFTRVNQ 121
                      + C   +      V    +   L   +     +    +  +L   +V+ 
Sbjct: 195 ELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDF 254

Query: 122 NHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
            H G Y+C   N  G    S  M   V +    +    
Sbjct: 255 QHAGNYSCVASNVQGK--HSTSMFFRVVESAGNSHHHH 290

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score =  124 bits (313), Expect = 4e-31
 Identities = 57/317 (17%), Positives = 88/317 (27%), Gaps = 50/317 (15%)

Query: 165 KVGESVDMHCEAQ----------EAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGL 214
             GE   MHC               +   +      +       K            E  
Sbjct: 243 PGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHT 302

Query: 215 RRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWL-PGYSGGP 273
                G   C          Q    +     P AP+ +T V     V L W  P  SGG 
Sbjct: 303 LPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGR 362

Query: 274 DLKQNYVIWYREQGNKDWLPIP----------VTPPGSTQITINRLTPATTYEFQVVGKN 323
           +    Y +   +   +     P                T +T++ L P   Y F V  +N
Sbjct: 363 ED-IVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARN 421

Query: 324 ELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTD 382
            +   + S      +       P  V +   +   + +SW  P  + S +  Y + YR  
Sbjct: 422 GVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKK 481

Query: 383 GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 442
           G   + N                           V       +T++ L P TTY  QV  
Sbjct: 482 GDSNSYN---------------------------VRRTEGFSVTLDDLAPDTTYLVQVQA 514

Query: 443 KNELGDGMLSNIVVVKT 459
             + G G  S +   +T
Sbjct: 515 LTQEGQGAGSKVHEFQT 531

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 65.6 bits (159), Expect = 1e-11
 Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 12/141 (8%)

Query: 208 NITIEGLRRVDFGYYECVVS--NEVATIVQAAQLVV--EGTQPHAPYNITGVA-TEFSVT 262
           ++T+  L       Y   V   N V+ +V +              P  +     +  S++
Sbjct: 401 SVTVSDLEP--HMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLS 458

Query: 263 LEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 321
           + W  P        K  Y + YR++G+ +   +  T      +T++ L P TTY  QV  
Sbjct: 459 VSWSIPPPQQSRVWK--YEVTYRKKGDSNSYNVRRTE--GFSVTLDDLAPDTTYLVQVQA 514

Query: 322 KNELGDGMLSNIVVVKTKGPK 342
             + G G  S +   +T  P+
Sbjct: 515 LTQEGQGAGSKVHEFQTLSPE 535

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score =  118 bits (297), Expect = 6e-31
 Identities = 43/220 (19%), Positives = 69/220 (31%), Gaps = 27/220 (12%)

Query: 242 EGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPG 300
                 AP N    A     +   WLP  SG P     Y + Y  QG+ +     +    
Sbjct: 2   SHMDLGAPQNPNAKAAGSRKIHFNWLPP-SGKP---MGYRVKYWIQGDSESEAHLLDSK- 56

Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFV 359
              + +  L P   YE +V      G+G  S++V  +T    P  P  ++   V+     
Sbjct: 57  VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQ 116

Query: 360 ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP 419
           +SW  P E    I  Y + Y                           +       + V  
Sbjct: 117 LSWAEPAETNGEITAYEVCYGLVND--------------------DNRPIGPMKKVLVDN 156

Query: 420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
           P +  + I  L  +  Y + V  +N  G G     ++   
Sbjct: 157 PKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLA 196

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 30/119 (25%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
            G P+N +     +  +  +W PP   +     Y +KY   G                  
Sbjct: 6   LGAPQNPNAKAAGSRKIHFNWLPP---SGKPMGYRVKYWIQGD----------------- 45

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
                          +       + +  L P   YE +V      G+G  S++V  +T 
Sbjct: 46  ---------SESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTH 95

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 17/138 (12%)

Query: 246 PHAPYNITGVA-TEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKD-----WLPIPVTP 298
           P  P  +     +     L W  P  + G      Y + Y    + +        + V  
Sbjct: 99  PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITA--YEVCYGLVNDDNRPIGPMKKVLVDN 156

Query: 299 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT--KGPKPGPPRNVSVTEVN- 355
           P +  + I  L  +  Y + V  +N  G G     ++            P    +  V+ 
Sbjct: 157 PKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDA 216

Query: 356 -----NGFVISWQPPLER 368
                    + +   + R
Sbjct: 217 QSGEDYDSFLMYSDDVLR 234

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  119 bits (300), Expect = 1e-30
 Identities = 37/273 (13%), Positives = 85/273 (31%), Gaps = 46/273 (16%)

Query: 7   SLETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTV 65
           S++ +   K    TL+I      D+G+Y   + +  G+   ++  L  E   ++      
Sbjct: 49  SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLVDEAFKELMMEVCK 107

Query: 66  QYLPFRLQGVVQCHIKANPTFQY---------VTWTKDKRLLEPYQTKDIVVMQNG---S 113
           +         +Q   +    + +         V W+ +   +    +  +     G    
Sbjct: 108 KIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY--SDRVKTGVTGEQIW 165

Query: 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV-------------------RKPPAF 154
           L       N +G+Y    ++       +  +                        +    
Sbjct: 166 LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 225

Query: 155 TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIV-----GGN 208
              P+ +   + G+++++ C      G   P ++W  ++  AL   +   +         
Sbjct: 226 GGLPDVV-TIQEGKALNLTC---NVWGDPPPEVSW-LKNEKALASDDHCNLKFEAGRTAY 280

Query: 209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
            TI G+   D G Y  VV N+  +      + V
Sbjct: 281 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 81.5 bits (201), Expect = 3e-17
 Identities = 31/212 (14%), Positives = 62/212 (29%), Gaps = 22/212 (10%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNA 134
           +C +       ++ W KD+R +      +    ++G  +LL T  ++   G Y     + 
Sbjct: 27  KCKVANIKKETHIVWYKDEREISV---DEKHDFKDGICTLLITEFSKKDAGIYEVILKDD 83

Query: 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ-------EAEGTQKPTI 187
            G   S  +  ++        ++            + +   A+            +   +
Sbjct: 84  RGKDKSRLK--LVDEAFKELMMEVCKK-IALSATDLKIQSTAEGIQLYSFVTYYVEDLKV 140

Query: 188 TWQRRDGVAL-PKNRVKIV--GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
            W   +G A+   +RVK    G  I   I      D G Y   + +      +   L  +
Sbjct: 141 NWS-HNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 199

Query: 243 GTQPHAPYNITGVATEFSVTLEWLPGYSGGPD 274
                A      +               G PD
Sbjct: 200 AYDE-AYAEFQRLKQAAIAEKNRARVLGGLPD 230

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 71.5 bits (175), Expect = 6e-14
 Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 28/164 (17%)

Query: 11  RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
           RV     G    L IN    +D G Y+ E+ +G    Q     L+ +   +         
Sbjct: 154 RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT-VDLSGQAYDEAYAEFQRLK 212

Query: 68  LPFRLQGVV---------------------QCHIKANPTFQYVTWTKDKRLLEPYQTKDI 106
                +                         C++  +P  + V+W K+++ L      ++
Sbjct: 213 QAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE-VSWLKNEKALASDDHCNL 271

Query: 107 VV--MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
                +        V+    G+Y     N +G++ S   + V +
Sbjct: 272 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 60.7 bits (147), Expect = 2e-10
 Identities = 27/225 (12%), Positives = 58/225 (25%), Gaps = 30/225 (13%)

Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK-PTITWQRRDGVAL-PKNRVKIV 205
               P F       ++     +V + C+       +K   I W  +D   +    +    
Sbjct: 4   PFTGPHFVEYLS--WEVTGECNVLLKCKV---ANIKKETHIVW-YKDEREISVDEKHDFK 57

Query: 206 GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
            G  T  I    + D G YE ++ ++        +LV E         +       +  L
Sbjct: 58  DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE-AFKELMMEVCKKIALSATDL 116

Query: 264 EWLPGYSGGPDLKQNY-------VIWYREQGNKDWLPIPVTP-------PGSTQITINRL 309
           +      G               V W       +   I  +             + IN  
Sbjct: 117 KIQSTAEGIQLYSFVTYYVEDLKVNWS-----HNGSAIRYSDRVKTGVTGEQIWLQINEP 171

Query: 310 TPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEV 354
           TP    ++ +   +       +  +  +         + +    +
Sbjct: 172 TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAI 216

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 11  RVVIKKD----GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
              +K +        IN V + DSG Y   V N  G  + +   ++V  P
Sbjct: 268 HCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTVSVFIP 316

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  116 bits (293), Expect = 7e-30
 Identities = 41/249 (16%), Positives = 74/249 (29%), Gaps = 21/249 (8%)

Query: 6   GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTV 65
               T        TL        ++G Y C              +L V+ PA   +    
Sbjct: 39  SPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGST-TIHLYVKDPAHS-WNLLA 96

Query: 66  QYLPFRL--QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH 123
           Q +      + V+ C I        V+  ++       +T           +  +     
Sbjct: 97  QEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTV-YFFSPWRGFIIRKAKVLD 155

Query: 124 QGRYTCTPYNAHGTQGSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEA 179
              Y C      G + +S  + + V +    PP   ++P  +  R  GE+  + C A   
Sbjct: 156 SNTYVCKTMVN-GRESTSTGIWLKVNRVHPEPPQIKLEPSKL-VRIRGEAAQIVCSAT-- 211

Query: 180 EGTQKPTITWQRRDGVALP-------KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT 232
              +       +R    L        ++        +++  +   D G Y CV SN+V T
Sbjct: 212 -NAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT 270

Query: 233 IVQAAQLVV 241
                   V
Sbjct: 271 RTATMNFQV 279

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 96.2 bits (239), Expect = 2e-22
 Identities = 22/188 (11%), Positives = 44/188 (23%), Gaps = 15/188 (7%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
           +C    +     V W            +        +L        + G Y CT      
Sbjct: 25  RCVSNGS-----VEWDGPISPYWTLDPES----PGSTLTTRNATFKNTGTYRCTELEDPM 75

Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
              ++    + V+ P               G+   + C     +   K +++  R  G  
Sbjct: 76  AGSTTIH--LYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI--TDPALKDSVSLMREGGRQ 131

Query: 197 LPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG 254
           + +  V          I   + +D   Y C               +        P  I  
Sbjct: 132 VLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKL 191

Query: 255 VATEFSVT 262
             ++    
Sbjct: 192 EPSKLVRI 199

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 85.4 bits (211), Expect = 1e-18
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 11/150 (7%)

Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
           +T          +I      DS  Y+C+      E  +   +L V         P ++  
Sbjct: 135 KTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN--RVHPEPPQIKLE 192

Query: 69  PFRL---QG---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDI---VVMQNGSLLFTRV 119
           P +L   +G    + C          V   +    LE     D       +  +L    V
Sbjct: 193 PSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAV 252

Query: 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149
           +    G Y+C   N  GT+ ++   +V+  
Sbjct: 253 DFQDAGIYSCVASNDVGTRTATMNFQVVES 282

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  114 bits (286), Expect = 8e-30
 Identities = 36/171 (21%), Positives = 71/171 (41%), Gaps = 9/171 (5%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
            V C + ++P    V+W      +         ++ N +L    +N++ +G Y C     
Sbjct: 21  EVVCRVSSSPAPA-VSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVE 79

Query: 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQR-KVGESVDMHCEAQEAEGTQKPTITWQRRD 193
              +     + V+V  PPA ++  ++     + GE +   C    A G+ +P I+W  R+
Sbjct: 80  ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC---RASGSPEPAISW-FRN 135

Query: 194 GVALPKN-RVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
           G  + +N +  +      +T+  +   D G Y C  +N+     + A L V
Sbjct: 136 GKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 89.5 bits (222), Expect = 5e-21
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 5/144 (3%)

Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSN-GIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
           + R  +  +  L I  +   D G+Y CE      GE       + V  P  ++       
Sbjct: 48  DNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFN 107

Query: 68  LPFRLQGVV--QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQG 125
                   +   C    +P    ++W ++ +L+E    K I+   N  L    +  +  G
Sbjct: 108 ATAERGEEMTFSCRASGSPEPA-ISWFRNGKLIEE-NEKYILKGSNTELTVRNIINSDGG 165

Query: 126 RYTCTPYNAHGTQGSSGQMEVLVR 149
            Y C   N  G       ++V V+
Sbjct: 166 PYVCRATNKAGEDEKQAFLQVFVQ 189

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 64.0 bits (156), Expect = 4e-12
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 31/191 (16%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL---PKNRVKIV-G 206
              F        + K GE  ++ C       +  P ++W       +     NR  ++  
Sbjct: 2   MLTFREVVSPQ-EFKQGEDAEVVCRV---SSSPAPAVSWLY-HNEEVTTISDNRFAMLAN 56

Query: 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG------TQPHAPYNITGVATEFS 260
            N+ I  + + D G Y C    E    +    ++V        + P   +N T    E  
Sbjct: 57  NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE-E 115

Query: 261 VTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP-----PGSTQITINRLTPATTY 315
           +T       SG P+     + W+     ++   I           +T++T+  +  +   
Sbjct: 116 MTFSCRA--SGSPEPA---ISWF-----RNGKLIEENEKYILKGSNTELTVRNIINSDGG 165

Query: 316 EFQVVGKNELG 326
            +     N+ G
Sbjct: 166 PYVCRATNKAG 176

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  115 bits (288), Expect = 5e-29
 Identities = 40/271 (14%), Positives = 92/271 (33%), Gaps = 44/271 (16%)

Query: 11  RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLN-VEFPAKVTFTPTVQ 66
           R+ ++  G    +    +G DD G+Y C+V++  G   +       ++    ++      
Sbjct: 48  RLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFP 107

Query: 67  YLPFRLQGVVQCHIKANPTFQY----------VTWTKDKRLLEPYQTKDIVVMQNG---S 113
            +P + +  V+   K    F            V +  +++ +       + + +N     
Sbjct: 108 TVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 167

Query: 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV-----------------RKPPAFTI 156
           +   ++    +G YT    +   T  S+  +   V                 ++ P F  
Sbjct: 168 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 227

Query: 157 KPEAMYQRKVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVALPKN-RVKIVGGN--ITIE 212
                ++     +V + C+       +K T I W + D   +  + +     G   + I 
Sbjct: 228 YLS--WEVTGECNVLLKCKV---ANIKKETHIVWYK-DEREISVDEKHDFKDGICTLLIT 281

Query: 213 GLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
              + D G YE ++ ++        +LV E 
Sbjct: 282 EFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 77.0 bits (189), Expect = 8e-16
 Identities = 50/302 (16%), Positives = 95/302 (31%), Gaps = 55/302 (18%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
           +C     P  +  +W+KD    E   +  + V   G    + F  +  +  G Y+C   +
Sbjct: 24  ECDK-MTPKSE-FSWSKDYVSTED--SPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTD 79

Query: 134 AHGTQGSSGQMEVLVR---------KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184
             G   S    E  ++         K P   +K E   +      V    +A   + +  
Sbjct: 80  TDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA--EKLSGN 137

Query: 185 PTITWQRRDGVAL---PKNRVKIVGGN----ITIEGLRRVDFGYYECVVSNEVATIVQAA 237
             + +   +   +   PK ++ I        + +E L+  D G Y   + +  AT     
Sbjct: 138 AKVNY-IFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTV 196

Query: 238 QLVVE-------GTQPHAPYNITGVATEFSVTLEW--LPGY--------SGGPDLKQNYV 280
            LV +         +      I      F   L W              +     K+ ++
Sbjct: 197 VLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIK--KETHI 254

Query: 281 IWYREQGNKDWLPIPVTP-----PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 335
           +WY     KD   I V        G   + I   +      ++V+ K++ G       +V
Sbjct: 255 VWY-----KDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309

Query: 336 VK 337
            +
Sbjct: 310 DE 311

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 28/217 (12%), Positives = 59/217 (27%), Gaps = 30/217 (13%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN---RVKIVGG 207
            P FT +           S++  C+    + T K   +W  +D V+   +    V+  G 
Sbjct: 3   DP-FTKEVVVNVDDDGVISLNFECD----KMTPKSEFSW-SKDYVSTEDSPRLEVESKGN 56

Query: 208 N--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLE- 264
              +T + L   D G Y C V++             E  +  A  +     T    +   
Sbjct: 57  KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELA 116

Query: 265 -----------WLPGYSGGPDLKQNYVIWYRE----QGNKDWLPIPVTPPGSTQITINRL 309
                      W+       + K   V +            +        G  ++ + +L
Sbjct: 117 VEILEKGQVRFWMQAEKLSGNAK---VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKL 173

Query: 310 TPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
                  +    ++       + ++V           
Sbjct: 174 QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEA 210

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  115 bits (289), Expect = 5e-29
 Identities = 49/275 (17%), Positives = 84/275 (30%), Gaps = 51/275 (18%)

Query: 13  VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK--------VTFTPT 64
           V+     L +     +DSG Y C               +     +            T  
Sbjct: 56  VLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGV 115

Query: 65  VQYLPFRLQGVV----------------QCHIKANPTFQYVTWTKDKRLLEPYQTKDI-- 106
               P+  +                   +C    NPT   ++W K+ R            
Sbjct: 116 DTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPS-ISWLKNGREFRGEHRIGGIK 174

Query: 107 VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR---KPPAFTIKPEAMYQ 163
           +  Q  SL+   V  + +G YTC   N  G+   +  ++VL R   +P      P     
Sbjct: 175 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQ-T 233

Query: 164 RKVGESVDMHCEAQEAEGTQKPTITWQRR---DGVALPKNRVKIV--------------G 206
             +G  V+ HC   +     +P I W +    +G  +  +    V               
Sbjct: 234 AVLGSDVEFHC---KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKEL 290

Query: 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
             +++  +   D G Y C+  N +     +A LVV
Sbjct: 291 EVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 93.9 bits (233), Expect = 2e-21
 Identities = 49/298 (16%), Positives = 82/298 (27%), Gaps = 59/298 (19%)

Query: 77  QCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135
            C      P      W KD   L P    + V++    L     +    G Y+C      
Sbjct: 29  SCPPPGGGPMGP-TVWVKDGTGLVP---SERVLVGPQRLQVLNASHEDSGAYSCRQRLTQ 84

Query: 136 GTQGS-------------------SGQMEVLVRKPPAFTIKPEAMYQR----KVGESVDM 172
                                     +   +    P +T +PE M ++        +V  
Sbjct: 85  RVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWT-RPERMDKKLLAVPAANTVRF 143

Query: 173 HCEAQEAEGTQKPTITWQRRDGVALPKN------RVKIVGGNITIEGLRRVDFGYYECVV 226
            C    A G   P+I+W  ++G            +++    ++ +E +   D G Y CVV
Sbjct: 144 RC---PAAGNPTPSISWL-KNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 199

Query: 227 SNEVATIVQAAQLVVEGTQPHAPYNITG------VATEFSVTLE------------WLPG 268
            N+  +I Q   L V    PH P    G            V               WL  
Sbjct: 200 ENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKH 259

Query: 269 YSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 326
                         Y                    ++++ +T     E+  +  N +G
Sbjct: 260 VEVNGSKVGPDGTPYVTVLKTAGANTTDKELEV--LSLHNVTFEDAGEYTCLAGNSIG 315

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 75.8 bits (186), Expect = 3e-15
 Identities = 31/168 (18%), Positives = 49/168 (29%), Gaps = 27/168 (16%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
             +  +  +LV+  V   D G Y C V N  G  +     L+V    +    P +Q    
Sbjct: 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIR-QTYTLDVL--ERSPHRPILQAGLP 229

Query: 71  RLQGVV-------QCHIKANPTFQYVTWTKDKRLLEPYQTKD--------------IVVM 109
             Q  V        C + ++     + W K   +       D                  
Sbjct: 230 ANQTAVLGSDVEFHCKVYSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDK 288

Query: 110 QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIK 157
           +   L    V     G YTC   N+ G    S  + VL        ++
Sbjct: 289 ELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLP--AEEELVE 334

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 61.9 bits (150), Expect = 9e-11
 Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 4/113 (3%)

Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIVGGN 208
           + P      +       G++V++ C      G       W  +DG  L  + RV +    
Sbjct: 6   EVPGPEPGQQEQLVFGSGDAVELSCPPPG--GGPMGPTVW-VKDGTGLVPSERVLVGPQR 62

Query: 209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSV 261
           + +      D G Y C        +   +  V +        +    A +  V
Sbjct: 63  LQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGV 115

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 10  TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
                K+   L ++ V  +D+G Y C   N IG      A+L V
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSH-HSAWLVV 325

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  114 bits (287), Expect = 5e-29
 Identities = 36/231 (15%), Positives = 66/231 (28%), Gaps = 12/231 (5%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
           + +L +  +  +D G Y C         ++   +L V    + T       L      + 
Sbjct: 78  NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMA 137

Query: 77  QCH-IKANPTFQYVTWTKDKRLLEPYQTKDIV----VMQNGSLLFTRVNQNHQGRYTCTP 131
           +C      P  Q +TW  D   +             V      +    +Q      TC  
Sbjct: 138 RCVSTGGRPPAQ-ITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKV 196

Query: 132 YNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT-ITWQ 190
            +    +     + + V  PP  +I               + C+A+      +PT   W 
Sbjct: 197 EHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR---SNPEPTGYNW- 252

Query: 191 RRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
                 LP       G  + I  + +       C V+N +        + V
Sbjct: 253 STTMGPLP-PFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 69.7 bits (170), Expect = 2e-13
 Identities = 46/295 (15%), Positives = 77/295 (26%), Gaps = 48/295 (16%)

Query: 77  QCHIKANPT----FQYVTWTKD-------------------KRLLEPYQTKDIVVMQNGS 113
            C+++           +TW +                     + LE    +    ++N S
Sbjct: 21  PCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNAS 80

Query: 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMH 173
           L    +    +G YTC  +        S  + + V   P  T + + +            
Sbjct: 81  LRMFGLRVEDEGNYTCL-FVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTG-EPVPMAR 138

Query: 174 CEAQEAEGTQKPTITWQRRDGVALPK--------NRVKIVGGNITIEGLRRVDFGYYECV 225
           C +    G     ITW   D   +P         +    V     +    +VD     C 
Sbjct: 139 CVS--TGGRPPAQITW-HSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCK 195

Query: 226 VSNEV--ATIVQAAQLVVEGTQPHA--PYNITGVATEFSVTLEWLPGYSGGPDLKQNYVI 281
           V +E      +    L V      +   Y+      +   TL         P  +     
Sbjct: 196 VEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLT--CDARSNP--EPTGYN 251

Query: 282 WYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 336
           W    G    LP      G+  + I  +             N LG       V V
Sbjct: 252 WSTTMGP---LPPFAVAQGAQ-LLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 3   TKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
           +          + +   L+I PV    +   +C V+N +G  Q A+  + V
Sbjct: 253 STTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQ-AELTVQV 302

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  110 bits (277), Expect = 1e-28
 Identities = 38/194 (19%), Positives = 68/194 (35%), Gaps = 12/194 (6%)

Query: 56  PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQ---N 111
             +V   P+   +         C +  +   + ++W   +   L P Q +  VV     +
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
            +L     N +  G Y C      GTQ S   + V + +   F   P      K GE   
Sbjct: 62  STLTIYNANIDDAGIYKCVVTAEDGTQ-SEATVNVKIFQKLMFKNAPTPQE-FKEGEDAV 119

Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV---GGNITIEGLRRVDFGYYECVVSN 228
           + C+      +  PTI W+ +    + K  V+ +      + I G+++ D G Y C    
Sbjct: 120 IVCDVV---SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRI 176

Query: 229 EVATIVQAAQLVVE 242
                +    + V 
Sbjct: 177 LARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 93.0 bits (231), Expect = 3e-22
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 1/132 (0%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
             TL I     DD+G+Y C V+   G    A   + +         PT Q        V+
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
            C + ++     + W    R +   +    +V+ N  L    + +  +G Y C       
Sbjct: 121 VCDVVSSLPPT-IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179

Query: 137 TQGSSGQMEVLV 148
            + +   ++V+V
Sbjct: 180 GEINFKDIQVIV 191

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
           R ++  +  L I  +   D G Y CE        +     + V 
Sbjct: 148 RFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG-EINFKDIQVI 190

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  110 bits (278), Expect = 1e-28
 Identities = 43/193 (22%), Positives = 83/193 (43%), Gaps = 10/193 (5%)

Query: 54  EFPAKVTFTPTVQYLPFRLQGVV--QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN 111
           + P     T  ++ +   ++ V    C +++ P  + ++WT++K L++ + T+  +    
Sbjct: 3   KLPKAPVITTPLETVDALVEEVATFMCAVESYPQPE-ISWTRNKILIKLFDTRYSIRENG 61

Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
             L    V  +  G Y CT  N  G    S    + V+  P  T  P  +     G    
Sbjct: 62  QLLTILSVEDSDDGIYCCTANNGVGGAVES-CGALQVKMKPKITRPPINVK-IIEGLKAV 119

Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEV 230
           + C      G  KP+++W + D      +R+ ++  G++ I  +++ D G Y CV  N +
Sbjct: 120 LPC---TTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSL 176

Query: 231 ATIV-QAAQLVVE 242
            T   +  +L VE
Sbjct: 177 GTAYSKLVKLEVE 189

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 88.6 bits (220), Expect = 1e-20
 Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 5/146 (3%)

Query: 5   VGSLETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
           +   +TR  I+++G  L I  V   D G+Y C  +NG+G    +   L V+   K+T  P
Sbjct: 48  IKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPP 107

Query: 64  TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH 123
               +   L+ V+ C    NP    V+W K    L       I V+++GSL    V +  
Sbjct: 108 INVKIIEGLKAVLPCTTMGNPKPS-VSWIKGDSALRE--NSRIAVLESGSLRIHNVQKED 164

Query: 124 QGRYTCTPYNAHGTQGSSG-QMEVLV 148
            G+Y C   N+ GT  S   ++EV V
Sbjct: 165 AGQYRCVAKNSLGTAYSKLVKLEVEV 190

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA 57
           R+ + + G+L I+ V  +D+G Y C   N +G   +    L VE  A
Sbjct: 146 RIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  112 bits (281), Expect = 7e-28
 Identities = 39/278 (14%), Positives = 91/278 (32%), Gaps = 43/278 (15%)

Query: 13  VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
           + K+   L   P   +D+G Y C + N       ++    +E   K +   +   LP   
Sbjct: 74  ISKEKDVLWFRPTLLNDTGNYTCMLRNTTYC---SKVAFPLEVVQKDSCFNSPMKLPVHK 130

Query: 73  QGVVQ-----------CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQ 121
             +              +  ++     +TW      ++     + V+ +  +L F     
Sbjct: 131 LYIEYGIQRITCPNVDGYFPSSVKPT-ITWYMGCYKIQN---FNNVIPEGMNLSFLIALI 186

Query: 122 NHQGRYTCT-PYNAHGTQGS-SGQMEVLVRKPPAFTIKP-------EAMYQRKVGESVDM 172
           ++ G YTC   Y  +G     +  + V V   P   + P         +Y+++ GE + +
Sbjct: 187 SNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLI 246

Query: 173 HCEAQEAEGTQ-KPTITWQR--------------RDGVALPKNRVKIVGGNITIEGLRRV 217
            C    +     +  + W                 + ++  +   +     ++I+ +   
Sbjct: 247 PCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSE 306

Query: 218 DFGY-YECVVSNEVATIVQAAQLVVEGTQPHAPYNITG 254
           D    Y C   +    + +AA++  +   P     +  
Sbjct: 307 DLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYTVELAC 344

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 89.2 bits (220), Expect = 1e-19
 Identities = 55/291 (18%), Positives = 93/291 (31%), Gaps = 40/291 (13%)

Query: 89  VTWTKDKR---LLEPYQTKDI---VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG 142
           + W   ++   L EP   +     +  +   L F     N  G YTC   N       + 
Sbjct: 50  LIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAF 109

Query: 143 QMEVLVRKPPAFTIKPEAMYQRKV--GESVDMHCEAQE--AEGTQKPTITWQRRDGVALP 198
            +EV+ +K   F    +    +         + C   +     + KPTITW         
Sbjct: 110 PLEVV-QKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN 168

Query: 199 KNRVKIVGGNITIEGLRRVDFGYYECVVS----NEVATIVQAAQLVVEGTQPHAPYNITG 254
            N V   G N++       + G Y CVV+         + +   + V G+  +A   +  
Sbjct: 169 FNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIH 228

Query: 255 VATEFSVTLEWLPGYS---------GGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ-- 303
              +  V  E  PG                 +N V W  +    D + I VT   S    
Sbjct: 229 SPND-HVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHS 287

Query: 304 ----------ITINRLTPA-TTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
                     ++I ++T       +    ++    G ++    VK K P P
Sbjct: 288 RTEDETRTQILSIKKVTSEDLKRSYVCHARSAK--GEVAKAAKVKQKVPAP 336

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 62.2 bits (150), Expect = 8e-11
 Identities = 28/176 (15%), Positives = 47/176 (26%), Gaps = 31/176 (17%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVS---NGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
             VI +   L        ++G Y C V+   NG          + V    K    P +  
Sbjct: 170 NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHS 229

Query: 68  ------------LPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV------- 108
                           +   V      +   + V WT D +  +       +        
Sbjct: 230 PNDHVVYEKEPGEELLIPCTVYFSFLMDSRNE-VWWTIDGKKPDDITIDVTINESISHSR 288

Query: 109 ----MQNGSLLFTRVNQNHQGR-YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
                +   L   +V      R Y C   +A G    + +   + +K PA     E
Sbjct: 289 TEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAK---VKQKVPAPRYTVE 341

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score =  114 bits (287), Expect = 7e-28
 Identities = 61/351 (17%), Positives = 100/351 (28%), Gaps = 46/351 (13%)

Query: 122 NHQGRYTCTPYNAHGTQGS-----SGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEA 176
            H     C   N H +        S   ++         + P+      VG  +   C +
Sbjct: 164 IHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVIL-VGSDITFCCVS 222

Query: 177 QEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA 236
           QE        +              + + G N+ I+             V       +  
Sbjct: 223 QE---KVLSALIGHT------NCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFG 273

Query: 237 AQLVVEGTQPHAPYNITGVATEF-SVTLEWLPGYSGGPD--LKQNYVIWYREQGNKDWLP 293
             +      P  P  +     +   +   W PG           +Y +     G    L 
Sbjct: 274 TVIFAG-YPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLK 332

Query: 294 IPVTPPG-STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVT 352
               P   S Q+    L     Y F +   N LG    S I+V  T+   P  P +  V 
Sbjct: 333 RAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQ-STILVNITEKVYPHTPTSFKVK 391

Query: 353 EVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKD 411
           ++N+  V +SW  P   A +     I+ +   S +      I+  ENS            
Sbjct: 392 DINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENS------------ 439

Query: 412 WLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE--LGDGMLSNIVVVKTK 460
                     S  + +++L P T Y F++    E        SN     T 
Sbjct: 440 ----------SYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKKQHLTT 480

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 14/108 (12%), Positives = 26/108 (24%), Gaps = 11/108 (10%)

Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 319
                W      G        I  R +               T I I  L+    YE  +
Sbjct: 11  VWQCSWKAPSGTGRGTDYEVCIEQRSR--------SCYQLEKTSIKIPALSH-GDYEITI 61

Query: 320 VGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN--NGFVISWQPP 365
              ++ G       +  +     P  P  + ++     +   + W   
Sbjct: 62  NSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDR 109

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  107 bits (269), Expect = 2e-27
 Identities = 35/192 (18%), Positives = 63/192 (32%), Gaps = 26/192 (13%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQT---------KDIVVMQNGSLLFTRVNQNHQG 125
            + C      + + V W  D+                 +D V      + F  V +   G
Sbjct: 23  KLSCAYSGFSSPR-VEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTG 81

Query: 126 RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP 185
            YTC      G      +++++V  PP+            +G    + C   E +G+   
Sbjct: 82  TYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT-IGNRAVLTC--SEQDGSPPS 138

Query: 186 TITWQRRDGVALPKNR------------VKIVGGNITIEGLRRVDFGYYECVVSNEVATI 233
             TW  +DG+ +P N             +    G +  + L   D G Y C   N   T 
Sbjct: 139 EYTW-FKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP 197

Query: 234 VQAAQLVVEGTQ 245
           + +  + +E  +
Sbjct: 198 MTSNAVRMEAVE 209

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 83.9 bits (207), Expect = 6e-19
 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 12/158 (7%)

Query: 2   NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA-AQAYLNVEFPAKVT 60
           N    S E RV       +    V  +D+G Y C VS   G      +  L V  P    
Sbjct: 53  NKITASYEDRVTFL-PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKP 111

Query: 61  FTPTVQYLPFRLQGVVQC-HIKANPTFQYVTWTKDKRLLEP--------YQTKDIVVMQN 111
                       + V+ C     +P  +Y TW KD  ++            +  ++    
Sbjct: 112 TVNIPSSATIGNRAVLTCSEQDGSPPSEY-TWFKDGIVMPTNPKSTRAFSNSSYVLNPTT 170

Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149
           G L+F  ++ +  G Y+C   N +GT  +S  + +   
Sbjct: 171 GELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 65.0 bits (158), Expect = 2e-12
 Identities = 38/213 (17%), Positives = 69/213 (32%), Gaps = 34/213 (15%)

Query: 151 PPAFTIK-PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP----------- 198
             + T+   E   +      V + C      G   P + W+   G               
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSC---AYSGFSSPRVEWKFDQGDTTRLVCYNNKITAS 58

Query: 199 -KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA--QLVVEG--TQPHAPYNIT 253
            ++RV  +   IT + + R D G Y C+VS E          +L+V    ++P      +
Sbjct: 59  YEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSS 118

Query: 254 GVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE---------QGNKDWLPIPVTPPGSTQI 304
                    L       G P  +     W+++                   V  P + ++
Sbjct: 119 -ATIGNRAVLTCSE-QDGSPPSE---YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGEL 173

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 337
             + L+ + T E+    +N  G  M SN V ++
Sbjct: 174 VFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  107 bits (268), Expect = 3e-27
 Identities = 38/180 (21%), Positives = 67/180 (37%), Gaps = 16/180 (8%)

Query: 75  VVQCHI-KANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPY 132
           V+ C      P      W  ++  +     K   V Q NG+L    V  + +G Y+C   
Sbjct: 27  VLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVS 86

Query: 133 NAHGTQGSSGQMEVLVRK--------PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK 184
           +   T+    +   L+          P    ++ + +Y   +G++V + C A    G   
Sbjct: 87  SPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY-ALMGQNVTLECFA---LGNPV 142

Query: 185 PTITWQRRDGVALPKN-RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
           P I W R+    +P    +   G  + I  ++  D G YEC   N        A++ V+ 
Sbjct: 143 PDIRW-RKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 76.5 bits (188), Expect = 2e-16
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 13/147 (8%)

Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEP--QAAQAYLNVEFPAKVTFTPTVQ 66
           + R V + +G L I  V + D G Y C VS+        +    L           P   
Sbjct: 57  KRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADI 116

Query: 67  YLPFRLQGVV-------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV 119
            + F+    +       +C    NP    + W K    +        +      L    +
Sbjct: 117 VVQFKDVYALMGQNVTLECFALGNPVPD-IRWRKVLEPMPS---TAEISTSGAVLKIFNI 172

Query: 120 NQNHQGRYTCTPYNAHGTQGSSGQMEV 146
               +G Y C   N  G      ++ V
Sbjct: 173 QLEDEGIYECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 10/105 (9%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPK---NRVKIV- 205
            P    +   + + K G+ + + C+           +  W   +   +      R  +  
Sbjct: 8   DPFPPEERPEV-RVKEGKGMVLLCDP--PYHFPDDLSYRWLL-NEFPVFITMDKRRFVSQ 63

Query: 206 -GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
             GN+ I  +   D G Y C VS+   T    ++ +     P   
Sbjct: 64  TNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERT 108

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  110 bits (275), Expect = 3e-27
 Identities = 39/272 (14%), Positives = 76/272 (27%), Gaps = 43/272 (15%)

Query: 5   VGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV-EFPAKVTFT- 62
           V + +   + +    L   P   +DSG Y C V N     +  +      E    + +  
Sbjct: 49  VSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR-IKISAKFVENEPNLCYNA 107

Query: 63  --PTVQYLPFRLQGVVQCH------IKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSL 114
                Q LP    G + C        + N   + + W KD + L               L
Sbjct: 108 QAIFKQKLPVAGDGGLVCPYMEFFKNENNELPK-LQWYKDCKPLLL--DNIHFSGVKDRL 164

Query: 115 LFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR-------KPPAFTIKPEAMYQRKVG 167
           +   V + H+G YTC     +  +       +            P          +  +G
Sbjct: 165 IVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLG 224

Query: 168 ESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEG-------------- 213
             + + C      G       W + +G  + ++   +     ++E               
Sbjct: 225 SQIQLICNVT---GQLSDIAYW-KWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLN 280

Query: 214 LRRVDF----GYYECVVSNEVATIVQAAQLVV 241
           +  ++       + C   N         QL+ 
Sbjct: 281 ISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  105 bits (262), Expect = 2e-25
 Identities = 33/202 (16%), Positives = 61/202 (30%), Gaps = 15/202 (7%)

Query: 75  VVQCHIKANPTFQYVTWTKD-KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133
           V  C +  N     +TW KD  +     +    +      L F        G Y C   N
Sbjct: 24  VRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRN 83

Query: 134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKV--GESVDMHC---EAQEAEGTQKPTIT 188
           +          +  V   P      +A++++K+       + C   E  + E  + P + 
Sbjct: 84  SSYCLRIKISAKF-VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQ 142

Query: 189 WQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAA-----QLVV 241
           W  +D   L  + +        + +  +     G Y C  S                + +
Sbjct: 143 W-YKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITL 201

Query: 242 EGTQPHAPYNITGVATEFSVTL 263
           E  +P  P  ++       V L
Sbjct: 202 EENKPTRPVIVSPANETMEVDL 223

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 57.0 bits (137), Expect = 3e-09
 Identities = 26/172 (15%), Positives = 48/172 (27%), Gaps = 26/172 (15%)

Query: 1   MNTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQ---AAQAYLNVEFPA 57
            + K   L+          L++  V     G Y C  S      Q               
Sbjct: 145 KDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN 204

Query: 58  KVTFTPTVQYLPFRLQGVV-------QCHIKANPTFQYVTWTKDKRLLE---PYQTKDIV 107
           K T  P +         V         C++    +     W  +  +++   P   +D  
Sbjct: 205 KPTR-PVIVSPANETMEVDLGSQIQLICNVTGQLSDI-AYWKWNGSVIDEDDPVLGEDYY 262

Query: 108 VMQNGS----------LLFTRVNQNH-QGRYTCTPYNAHGTQGSSGQMEVLV 148
            ++N +          L  + +     +  +TC   N HG   +  Q+   V
Sbjct: 263 SVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  106 bits (266), Expect = 6e-27
 Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 15/175 (8%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
           + HI   P  + V+W +D +++       + +  +     L    V + + GRY+    N
Sbjct: 26  EAHISGFPVPE-VSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATN 84

Query: 134 AHGTQGSSGQMEVLVR-KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
             G   S+ ++ V     PP F  + ++M   + G  V +        G   P + +  R
Sbjct: 85  GSGQATSTAELLVKAETAPPNFVQRLQSM-TVRQGSQVRLQV---RVTGIPTPVVKFY-R 139

Query: 193 DGVAL-PKNRVKIV--GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           DG  +      +I   G   +  I      D G Y    +N V      A+L+V+
Sbjct: 140 DGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 81.7 bits (202), Expect = 3e-18
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 10/136 (7%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQ 73
              L I  V   +SG Y  + +NG G+   + A L V+    P           +    Q
Sbjct: 62  RAKLTIPAVTKANSGRYSLKATNGSGQAT-STAELLVKAETAPPNFVQRLQSMTVRQGSQ 120

Query: 74  GVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCT 130
             +Q  +   PT   V + +D   ++   + D  + Q G   SLL         G Y+  
Sbjct: 121 VRLQVRVTGIPTPV-VKFYRDGAEIQS--SLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177

Query: 131 PYNAHGTQGSSGQMEV 146
             N+ G   S+ ++ V
Sbjct: 178 ATNSVGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 18/130 (13%)

Query: 147 LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-----PKNR 201
           +  + P FT   +++     G +           G   P ++W R DG  +     P  +
Sbjct: 1   MTTQAPTFTQPLQSV-VVLEGSTATFEAHI---SGFPVPEVSWFR-DGQVISTSTLPGVQ 55

Query: 202 VKIVGGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP-----HAPYNITG 254
           +    G     I  + + + G Y    +N        A+L+V+             ++T 
Sbjct: 56  ISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMT- 114

Query: 255 VATEFSVTLE 264
           V     V L+
Sbjct: 115 VRQGSQVRLQ 124

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score =  108 bits (271), Expect = 8e-27
 Identities = 52/312 (16%), Positives = 94/312 (30%), Gaps = 51/312 (16%)

Query: 165 KVGESVDMHCEAQEAE--GTQKPTITWQRRDGVALPKNRVKIVGGN-----ITIEGLRRV 217
            +G+ +   C  ++       +P I W R      P  R + +        IT+  L   
Sbjct: 13  HLGDPITASCIIKQNCSHLDPEPQILW-RLGAELQPGGRQQRLSDGTQESIITLPHLNHT 71

Query: 218 DFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVA--TEFSVTLEWLPGYSGGPDL 275
                  +       I+   +L   G  P  P+N++ +   T  S+  +W PG      L
Sbjct: 72  QAFLSCSLNWGNSLQILDQVELRA-GYPPAIPHNLSCLMNLTTSSLICQWEPGPETH--L 128

Query: 276 KQNYVIWYR-------EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 328
             ++ +           QG+     +P        I    L         V  +N LG  
Sbjct: 129 PTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTS 188

Query: 329 MLSNIVVVKTKGPKPGPPRNVSVTEVNNG-------FVISWQPPLERASLIQYYLIKYRT 381
           M   + +      K  PP   ++               +SW+P      + Q   ++++ 
Sbjct: 189 MSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHK- 247

Query: 382 DGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV 441
                                   ++G   W  +   P  + Q  +  L PAT Y  Q+ 
Sbjct: 248 -----------------------PQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIR 284

Query: 442 GKNELGDGMLSN 453
                  G  S+
Sbjct: 285 CIRWPLPGHWSD 296

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 67.3 bits (163), Expect = 1e-12
 Identities = 42/301 (13%), Positives = 89/301 (29%), Gaps = 29/301 (9%)

Query: 69  PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT 128
           P     +++ +         + W     L    + + +      S++      + Q   +
Sbjct: 17  PITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLS 76

Query: 129 CTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT-I 187
           C+  N   +     Q+E+    PPA       +       +  + C+ +    T  PT  
Sbjct: 77  CS-LNWGNSLQILDQVELRAGYPPAIPHNLSCLMN---LTTSSLICQWEPGPETHLPTSF 132

Query: 188 TWQRRDGVALPKNRVKIVGGNITIEGLRRVDF---------GYYECV-VSNEVATIVQAA 237
           T +        + +   +   +  +G                    V   N + T +   
Sbjct: 133 TLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQ 192

Query: 238 QLV--VEGTQPHAPYNITGV-------ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN 288
             +  ++  +   P   T              + L W P   G   + Q   + ++ Q  
Sbjct: 193 LCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLH-INQKCELRHKPQRG 251

Query: 289 K-DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN---IVVVKTKGPKPG 344
           +  W  +   P  + Q  +  L PAT Y  Q+        G  S+    + ++T      
Sbjct: 252 EASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAA 311

Query: 345 P 345
           P
Sbjct: 312 P 312

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score =  112 bits (280), Expect = 1e-26
 Identities = 34/255 (13%), Positives = 70/255 (27%), Gaps = 39/255 (15%)

Query: 220 GYYECVVSNEVATIVQAAQLVVEGTQPHAPYNIT-GVATEFSVTLEWLPGYSGGPDL--- 275
           G  +C  SN      Q  + + +G        +         + ++W   ++   +    
Sbjct: 136 GVKKCC-SNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIY 194

Query: 276 ----KQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS 331
               + NY I   E     W  +  T     ++ +  + P+  Y+F+V   N  G    +
Sbjct: 195 VVQRRWNYGIHPSEDDATHWQTVAQTT--DERVQLTDIRPSRWYQFRVAAVNVHGTRGFT 252

Query: 332 NIVVVKTKGPK---PGPPRNVSVTEVNNGF------VISWQPPLERASLIQYYLIKYRTD 382
                         P  P N+ +              I W  P E    + +Y + +   
Sbjct: 253 APSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWS-- 310

Query: 383 GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 442
                            ++   +            T      + + +L P   Y  ++  
Sbjct: 311 -----------------WMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQA 353

Query: 443 KNELGDGMLSNIVVV 457
               G   L +  V 
Sbjct: 354 ITYWGQTRLKSAKVS 368

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 82.3 bits (202), Expect = 7e-17
 Identities = 28/234 (11%), Positives = 55/234 (23%), Gaps = 22/234 (9%)

Query: 246 PHAPYNIT------GVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKD------WL 292
           P AP N+             +VT+ W  P     P    +Y +++    +          
Sbjct: 267 PPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPV--HHYKVFWSWMVSSKSLVPTKKK 324

Query: 293 PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN---IVVVKTKGPKPGPPRNV 349
               T      + + +L P   Y  ++      G   L +    +   +        + V
Sbjct: 325 RRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLV 384

Query: 350 SVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQG- 408
              +      + +Q       L              K   K    P  N Y   +  +  
Sbjct: 385 KTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEAC 444

Query: 409 ---NKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                              I +  L+ +  Y+  V             +     
Sbjct: 445 AHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTP 498

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 72.3 bits (176), Expect = 1e-13
 Identities = 36/263 (13%), Positives = 69/263 (26%), Gaps = 48/263 (18%)

Query: 225 VVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYR 284
           V + +     Q        T+P           +  V + W    +  P + + +V W+ 
Sbjct: 384 VKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKK--TEDPTVNRYHVRWFP 441

Query: 285 EQGNKDWLPIPVTPPGSTQ---ITINRLTPATTYEFQVVGKNELGDGMLSNIV------- 334
           E    +         G T    I +  L+ +  Y+  V             +        
Sbjct: 442 EACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCS 501

Query: 335 VVKTKGPKPGP---------------PRNVSVTEVNNGF----VISWQPPLERA-SLIQY 374
            +K K  KP                 P N+S + +          SW+         +  
Sbjct: 502 ALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTG 561

Query: 375 YLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPAT 434
           + + +    +    N         S                 + P     +T+  L P+T
Sbjct: 562 FQVTWAEVTTESRQNSLPNSIISQSQ----------------ILPSDHYVLTVPNLRPST 605

Query: 435 TYEFQVVGKNELGDGMLSNIVVV 457
            Y  +V      G+G  +     
Sbjct: 606 LYRLEVQVLTPGGEGPATIKTFR 628

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 61.9 bits (149), Expect = 2e-10
 Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 17/136 (12%)

Query: 246 PHAPYNITGV----ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK---DWLP----- 293
              P N++          +    W    +        + + + E   +   + LP     
Sbjct: 525 LAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIIS 584

Query: 294 -IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVT 352
              + P     +T+  L P+T Y  +V      G+G  + I   +T    P       + 
Sbjct: 585 QSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPAT-IKTFRTPELPPSSAHRSHLK 643

Query: 353 EVNNGFVISWQPPLER 368
             +      ++P  ER
Sbjct: 644 HRH---PHHYKPSPER 656

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  106 bits (265), Expect = 6e-26
 Identities = 36/226 (15%), Positives = 68/226 (30%), Gaps = 37/226 (16%)

Query: 226 VSNEVATIVQAAQLVVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYR 284
           +++         +++ +G    AP ++     T  S++ +W P       L   Y +   
Sbjct: 1   MAHHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP---NVQL-TGYRVRVT 56

Query: 285 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPG 344
            +     +      P S+ + ++ L  AT YE  V    +      +  VV         
Sbjct: 57  PKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTL--ENVS 114

Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
           PPR   VT+       ISW+        I  + +                         +
Sbjct: 115 PPRRARVTDATETTITISWRTK---TETITGFQV-------------------------D 146

Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
                 +  +   +  P     TI  L P T Y+  +   N+    
Sbjct: 147 AVPANGQTPIQRTI-KPDVRSYTITGLQPGTDYKIYLYTLNDNARS 191

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  101 bits (253), Expect = 2e-24
 Identities = 42/213 (19%), Positives = 67/213 (31%), Gaps = 39/213 (18%)

Query: 239 LVVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT 297
           +V        P        TE ++T+ W        +    + +       +  +   + 
Sbjct: 106 VVTTLENVSPPRRARVTDATETTITISWRTK----TETITGFQVDAVPANGQTPIQRTI- 160

Query: 298 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEV-NN 356
            P     TI  L P T Y+  +   N   D   S+ VV+         P N+       N
Sbjct: 161 KPDVRSYTITGLQPGTDYKIYLYTLN---DNARSSPVVIDASTA-IDAPSNLRFLATTPN 216

Query: 357 GFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416
             ++SWQPP    + I  Y+I                         +Y + G+     +P
Sbjct: 217 SLLVSWQPP---RARITGYII-------------------------KYEKPGSPPREVVP 248

Query: 417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
              PG T+ TI  L P T Y   V+        
Sbjct: 249 RPRPGVTEATITGLEPGTEYTIYVIALKNNQKS 281

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 67.1 bits (164), Expect = 1e-12
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 29/130 (22%)

Query: 331 SNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLN 389
           S+ + V  +GP    P ++  T+V        W PP      +  Y +            
Sbjct: 9   SSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP---NVQLTGYRV------------ 53

Query: 390 KGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
                            +     +      P S+ + ++ L  AT YE  V    +    
Sbjct: 54  -------------RVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTS 100

Query: 450 MLSNIVVVKT 459
             +  VV   
Sbjct: 101 RPAQGVVTTL 110

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 62.1 bits (151), Expect = 6e-11
 Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 7/143 (4%)

Query: 187 ITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
           +     +G    +  +K    + TI GL+      Y+  +         +  ++   T  
Sbjct: 145 VDAVPANGQTPIQRTIKPDVRSYTITGLQP--GTDYKIYLYTLNDNARSSPVVIDASTAI 202

Query: 247 HAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQIT 305
            AP N+  +A T  S+ + W P           Y+I Y + G+     +P   PG T+ T
Sbjct: 203 DAPSNLRFLATTPNSLLVSWQP--PRAR--ITGYIIKYEKPGSPPREVVPRPRPGVTEAT 258

Query: 306 INRLTPATTYEFQVVGKNELGDG 328
           I  L P T Y   V+        
Sbjct: 259 ITGLEPGTEYTIYVIALKNNQKS 281

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  103 bits (258), Expect = 9e-26
 Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 31/202 (15%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPY---------QTKDIVVMQNGSLLFTRVNQNHQG 125
            + C      + + V W   +                  D V   +  + F+ V +   G
Sbjct: 20  KLTCTYSGFSSPR-VEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNG 78

Query: 126 RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP 185
            YTC      G       + + V  PP+            +G    + C   E +G+   
Sbjct: 79  EYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV-PSSVTIGNRAVLTC--SEHDGSPPS 135

Query: 186 TITWQRRDGVALP-------------KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT 232
             +W  +DG+++                 +    G++  + +   D G Y C   N   T
Sbjct: 136 EYSW-FKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT 194

Query: 233 IVQAAQLVVEGTQPHAPYNITG 254
            +++    ++  +     N+ G
Sbjct: 195 AMRSEAAHMDAVEL----NVGG 212

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 93.5 bits (232), Expect = 3e-22
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 12/162 (7%)

Query: 2   NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA-AQAYLNVEFPAKVT 60
           N+++ +     V      +  + V   D+G Y C VS   G+       +L V  P    
Sbjct: 49  NSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKP 108

Query: 61  FTPTVQYLPFRLQGVVQCH-IKANPTFQYVTWTKDKRLLEPYQTKDI---------VVMQ 110
                  +    + V+ C     +P  +Y +W KD   +     K           +  +
Sbjct: 109 TISVPSSVTIGNRAVLTCSEHDGSPPSEY-SWFKDGISMLTADAKKTRAFMNSSFTIDPK 167

Query: 111 NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152
           +G L+F  V     G Y C   N +GT   S    +   +  
Sbjct: 168 SGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELN 209

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 63.8 bits (155), Expect = 7e-12
 Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 16/103 (15%)

Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP------------K 199
            +       + Q    ES+ + C      G   P + W+   G                 
Sbjct: 2   GSVYTAQSDV-QVPENESIKLTC---TYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYA 57

Query: 200 NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           +RV      IT   + R D G Y C+VS E         + + 
Sbjct: 58  DRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score =  101 bits (254), Expect = 4e-25
 Identities = 44/215 (20%), Positives = 71/215 (33%), Gaps = 35/215 (16%)

Query: 246 PHAPYNITGVATEF-SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P  P N++ +  E   +  EW  G     +   N+ +      +K +          T  
Sbjct: 8   PEKPKNLSCIVNEGKKMRCEWDGGRETHLE--TNFTLKSEWATHK-FADCKAKRDTPTSC 64

Query: 305 TINR-LTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG---FVI 360
           T++         E  V  +N LG     +I        KP PP N+SV           +
Sbjct: 65  TVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKL 124

Query: 361 SWQPPLERASLIQYYLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT 418
           +W  P  ++ +I  Y I+YRT  +  W  +                             T
Sbjct: 125 TWTNPSIKSVIILKYNIQYRTKDASTWSQIP-------------------------PEDT 159

Query: 419 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
               +  T+  L P T Y F++    E G G  S+
Sbjct: 160 ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 194

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 57.7 bits (139), Expect = 8e-10
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 9/118 (7%)

Query: 240 VVEGTQPHAPYNITGV---ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW--LPI 294
            V   +P+ P+N++ +        + L W         +   Y I YR +    W  +P 
Sbjct: 98  PVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPP 156

Query: 295 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN---IVVVKTKGPKPGPPRNV 349
             T    +  T+  L P T Y F++    E G G  S+        T   +P    + 
Sbjct: 157 EDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPSF 214

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  103 bits (257), Expect = 1e-24
 Identities = 39/237 (16%), Positives = 66/237 (27%), Gaps = 15/237 (6%)

Query: 15  KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP-----TVQYLP 69
             DGT+ ++ +  +D G+Y+CE +      + +Q  L V                 +   
Sbjct: 89  FTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQ 148

Query: 70  FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQT---KDIVVMQNGSLLFTRVNQNHQGR 126
                V  C          V+W    +    YQ     +  V            + HQ  
Sbjct: 149 DDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQS 208

Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
             C           S  + V     P  TI+            V + C   +A+     T
Sbjct: 209 LACIVNYHMDRFKESLTLNVQY--EPEVTIEGFDGNWYLQRMDVKLTC---KADANPPAT 263

Query: 187 -ITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
              W      +LPK              +     G Y C  +N + T     ++ + 
Sbjct: 264 EYHW-TTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 89.8 bits (222), Expect = 5e-20
 Identities = 34/144 (23%), Positives = 49/144 (34%), Gaps = 10/144 (6%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
                + P          C V+  +   +     LNV++  +VT          +   V 
Sbjct: 193 ISRYRLVPSREAHQQSLACIVNYHMDRFKE-SLTLNVQYEPEVTIEGFDGNWYLQRMDVK 251

Query: 77  -QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR-VNQNHQGRYTCTPYNA 134
             C   ANP      WT     L        V  QN +L F   +N +  G Y C   N 
Sbjct: 252 LTCKADANPPATEYHWTTLNGSLPK-----GVEAQNRTLFFKGPINYSLAGTYICEATNP 306

Query: 135 HGTQGSSGQMEVLVRKPPAFTIKP 158
            GT+  SGQ+EV + +  A     
Sbjct: 307 IGTR--SGQVEVNITEAAALEHHH 328

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 53.2 bits (127), Expect = 6e-08
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 6   GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTV 65
           GSL   V  +        P+    +G Y+CE +N IG     Q  +N+   A +      
Sbjct: 272 GSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRS-GQVEVNITEAAALEHHHHH 330

Query: 66  Q 66
            
Sbjct: 331 H 331

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 96.3 bits (240), Expect = 3e-24
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 242 EGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPG 300
            G  P AP ++     +   + L W    S        Y ++Y ++G         + PG
Sbjct: 14  TGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPG 73

Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
             Q+TI  L PAT Y F+V+ +N+ G G  S  + V+T+       
Sbjct: 74  EMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGPSS 119

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 93.2 bits (232), Expect = 3e-23
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 27/137 (19%)

Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERA-SLIQYYLIKYRTDG 383
           G    S      T GP P  PR+V  + V+  F+ ++W+ P          Y +      
Sbjct: 1   GSSGSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSV------ 54

Query: 384 SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK 443
                               Y ++G         + PG  Q+TI  L PAT Y F+V+ +
Sbjct: 55  -------------------FYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQ 95

Query: 444 NELGDGMLSNIVVVKTK 460
           N+ G G  S  + V+T+
Sbjct: 96  NKHGSGESSAPLRVETQ 112

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 98.6 bits (245), Expect = 4e-24
 Identities = 37/220 (16%), Positives = 62/220 (28%), Gaps = 47/220 (21%)

Query: 256 ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTY 315
           +   S  ++W             Y++ +R + +         P      TI  L P   Y
Sbjct: 13  SQPNSHPIQWNAPQPSHIS---KYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVY 69

Query: 316 EFQVVGKNELGDGMLSNIVVVKTKG---------------PKPGPPRNVSVTEVN-NGFV 359
           E Q++   + G   ++      T                   P    + SVTE+  + FV
Sbjct: 70  EGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFV 129

Query: 360 ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP 419
           +SW      +  +  + +                         EY      D       P
Sbjct: 130 VSWVSA---SDTVSGFRV-------------------------EYELSEEGDEPQYLDLP 161

Query: 420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
             +T + I  L P   Y   V   +E G+  L       T
Sbjct: 162 STATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 51.6 bits (123), Expect = 9e-08
 Identities = 23/119 (19%), Positives = 35/119 (29%), Gaps = 30/119 (25%)

Query: 345 PPRNVSVTEVN---NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
            P  V +TE     N   I W  P  + S I  Y++++R                     
Sbjct: 2   GPVEVFITETPSQPNSHPIQWNAP--QPSHISKYILRWRPKN------------------ 41

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
                     W    + P      TI  L P   YE Q++   + G   ++      T 
Sbjct: 42  ------SVGRWKEATI-PGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTS 93

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  102 bits (255), Expect = 4e-24
 Identities = 49/274 (17%), Positives = 75/274 (27%), Gaps = 41/274 (14%)

Query: 186 TITWQRRDGVALPKNRVKIVGGN-ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244
            + +                  N + +  L       Y   VS+             + T
Sbjct: 127 LVRYSPVKNEEDVAELSISPSDNAVVLTNLLP--GTEYVVSVSSVYEQHESTPLRGRQKT 184

Query: 245 QPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
              +P  I     T  S T+ W+            Y I +  +           P     
Sbjct: 185 GLDSPTGIDFSDITANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVPHSRNS 240

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISW 362
           IT+  LTP T Y   +V  N   +  L     +  +      PR++ V        +ISW
Sbjct: 241 ITLTNLTPGTEYVVSIVALNGREESPLL----IGQQSTVSDVPRDLEVVAATPTSLLISW 296

Query: 363 QPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS 422
             P   A  ++YY I                          Y E G    +     P   
Sbjct: 297 DAP---AVTVRYYRI-------------------------TYGETGGNSPVQEFTVPGSK 328

Query: 423 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
           +  TI+ L P   Y   V      GD   S+  +
Sbjct: 329 STATISGLKPGVDYTITVYAVTGRGDSPASSKPI 362

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 98.8 bits (246), Expect = 6e-23
 Identities = 42/273 (15%), Positives = 73/273 (26%), Gaps = 41/273 (15%)

Query: 186 TITWQRRDGVALPKNRVKIVGG--NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
            IT    +G         +     + T + L       Y   V                 
Sbjct: 35  RITTTPTNGQQGNSLEEVVHADQSSCTFDNLSP--GLEYNVSVYTVKDDKESVPISDTII 92

Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
                P ++        ++ + W P  S       N+++ Y    N++ +      P   
Sbjct: 93  PAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLT---NFLVRYSPVKNEEDVAELSISPSDN 149

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVIS 361
            + +  L P T Y   V    E  +   S  +  + K      P  +  +++  N F + 
Sbjct: 150 AVVLTNLLPGTEYVVSVSSVYEQHE---STPLRGRQKTG-LDSPTGIDFSDITANSFTVH 205

Query: 362 WQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG 421
           W  P    + I  Y I                          +  +           P  
Sbjct: 206 WIAP---RATITGYRI-------------------------RHHPEHFSGRPREDRVPHS 237

Query: 422 STQITINRLTPATTYEFQVVGKNELGDGMLSNI 454
              IT+  LTP T Y   +V  N   +  L   
Sbjct: 238 RNSITLTNLTPGTEYVVSIVALNGREESPLLIG 270

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 97.2 bits (242), Expect = 2e-22
 Identities = 28/208 (13%), Positives = 59/208 (28%), Gaps = 38/208 (18%)

Query: 246 PHAPYN--ITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS-T 302
              P N  +        +T+ W    +        Y I       +    +        +
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERSTTPDIT---GYRITTTPTNGQQGNSLEEVVHADQS 58

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVIS 361
             T + L+P   Y   V    +  + +  +  ++    P   PP ++  T +  +   ++
Sbjct: 59  SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTII----PAVPPPTDLRFTNIGPDTMRVT 114

Query: 362 WQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG 421
           W PP   +  +  +L+                          Y    N++ +      P 
Sbjct: 115 WAPP--PSIDLTNFLV-------------------------RYSPVKNEEDVAELSISPS 147

Query: 422 STQITINRLTPATTYEFQVVGKNELGDG 449
              + +  L P T Y   V    E  + 
Sbjct: 148 DNAVVLTNLLPGTEYVVSVSSVYEQHES 175

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 14/119 (11%), Positives = 30/119 (25%), Gaps = 28/119 (23%)

Query: 343 PGPPRNVSVTEV--NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
             PP N+ +          +SW+        I  Y I        +  +  +        
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERSTT--PDITGYRITTTPTNGQQGNSLEE-------- 51

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                           V     +  T + L+P   Y   V    +  + +  +  ++  
Sbjct: 52  ----------------VVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPA 94

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 98.0 bits (244), Expect = 6e-24
 Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 36/204 (17%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
            P +++ V  T+ S+ L W P  S        Y I     G    +            T+
Sbjct: 25  QPTDLSFVDITDSSIGLRWTPLNSSTII---GYRITVVAAGEGIPIFEDFVDSSVGYYTV 81

Query: 307 NRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPP 365
             L P   Y+  V      G+   + +           PP ++  T +  +   ++W PP
Sbjct: 82  TGLEPGIDYDISVYTVKNGGESTPTTLTQQTA----VPPPTDLRFTNIGPDTMRVTWAPP 137

Query: 366 LERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQI 425
              +  +  +L+                          Y    N++ +      P    +
Sbjct: 138 --PSIDLTNFLV-------------------------RYSPVKNEEDVAELSISPSDNAV 170

Query: 426 TINRLTPATTYEFQVVGKNELGDG 449
            +  L P T Y   V    E  + 
Sbjct: 171 VLTNLLPGTEYVVSVSSVYEQHES 194

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 19/138 (13%), Positives = 36/138 (26%), Gaps = 29/138 (21%)

Query: 320 VGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIK 378
           +G +       S +V   +    P  P ++S  ++  +   + W P    +S I  Y I 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMEVP-QPTDLSFVDITDSSIGLRWTPL--NSSTIIGYRI- 56

Query: 379 YRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEF 438
                                        G    +            T+  L P   Y+ 
Sbjct: 57  ------------------------TVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDI 92

Query: 439 QVVGKNELGDGMLSNIVV 456
            V      G+   + +  
Sbjct: 93  SVYTVKNGGESTPTTLTQ 110

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 98.0 bits (244), Expect = 7e-24
 Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 16/200 (8%)

Query: 53  VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL---EPYQTKDIVVM 109
            +FP ++   P+   +       + C  +  PT   + W K    +   +       +++
Sbjct: 6   EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT-IEWYKGGERVETDKDDPRSHRMLL 64

Query: 110 QNGSLLFTRV-----NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQR 164
            +GSL F R+     ++  +G Y C   N  G   S      +      F   P  +   
Sbjct: 65  PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVA 124

Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN--RVKIVGGNITIEGLRRVDFGYY 222
            VGE   M C+     G  +PTI+W ++DG  L     R+ I GG + I   R+ D G Y
Sbjct: 125 -VGEPAVMECQP--PRGHPEPTISW-KKDGSPLDDKDERITIRGGKLMITYTRKSDAGKY 180

Query: 223 ECVVSNEVATIV-QAAQLVV 241
            CV +N V     + A+L V
Sbjct: 181 VCVGTNMVGERESEVAELTV 200

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 85.6 bits (212), Expect = 2e-19
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 11/165 (6%)

Query: 2   NTKVGSLETRVVIKKDGTLVI-----NPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
            T      +  ++   G+L             D G+Y+C   N +GE  +  A L V   
Sbjct: 51  ETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL 110

Query: 57  AKV-TFTPTVQYLPFRLQGVVQCH-IKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSL 114
                  P+   +      V++C   + +P    ++W KD   L+     + + ++ G L
Sbjct: 111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPT-ISWKKDGSPLDD--KDERITIRGGKL 167

Query: 115 LFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
           + T   ++  G+Y C   N  G + S    E+ V + P+F     
Sbjct: 168 MITYTRKSDAGKYVCVGTNMVGERESEV-AELTVLERPSFVKAAA 211

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 61.0 bits (148), Expect = 5e-11
 Identities = 48/198 (24%), Positives = 68/198 (34%), Gaps = 39/198 (19%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL------PKNRVKI 204
           PP     P  +   K GE   ++C+A   EG   PTI W +  G  +      P++   +
Sbjct: 9   PPRIVEHPSDLIVSK-GEPATLNCKA---EGRPTPTIEWYK-GGERVETDKDDPRSHRML 63

Query: 205 VGG------NITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVVEGTQPH---APYNITG 254
           +         I      R D G Y CV  N +   V   A L V   +      P ++  
Sbjct: 64  LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMV 123

Query: 255 VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPP------GSTQITINR 308
              E    +E  P   G P+     + W      KD  P+           G   IT  R
Sbjct: 124 AVGE-PAVMECQP-PRGHPEPT---ISWK-----KDGSPLDDKDERITIRGGKLMITYTR 173

Query: 309 LTPATTYEFQVVGKNELG 326
            + A  Y    VG N +G
Sbjct: 174 KSDAGKY--VCVGTNMVG 189

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 96.7 bits (241), Expect = 1e-23
 Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 18/178 (10%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
            C +  +P    V W +  + +     K  +    G    L+   V  +    Y     N
Sbjct: 25  VCKVTGHPKPI-VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 83

Query: 134 AHGTQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ 190
             G+   +  +EV V      P       A++    GE V +        G   P ITWQ
Sbjct: 84  QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHA-LRGEVVSIKIPF---SGKPDPVITWQ 139

Query: 191 RRDGVALPKN-RVKIVGGN-----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           +     +  N   +++        +   G+ R D G+Y     N      +  +L V 
Sbjct: 140 K-GQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 78.2 bits (193), Expect = 6e-17
 Identities = 34/151 (22%), Positives = 55/151 (36%), Gaps = 15/151 (9%)

Query: 7   SLETRVVIKKDG--TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT---F 61
            L+ R+   K G   L+I  V  DD+ +Y    +N  G      A L VE PAK+     
Sbjct: 49  GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVS-GTASLEVEVPAKIHLPKT 107

Query: 62  TPTVQYLPFRLQGVV--QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS----LL 115
              +  +      VV  +      P    +TW K + L++        V+   S    + 
Sbjct: 108 LEGMGAVHALRGEVVSIKIPFSGKPDPV-ITWQKGQDLIDN--NGHYQVIVTRSFTSLVF 164

Query: 116 FTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146
              V +   G Y     N  G    + +++V
Sbjct: 165 PNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 12/106 (11%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL----PKNRVKIVG 206
            P F  +   +   +   +  + C+     G  KP + W R  G  +     K R++   
Sbjct: 4   APHFKEELRNL-NVRYQSNATLVCKV---TGHPKPIVKWYR-QGKEIIADGLKYRIQEFK 58

Query: 207 GNI---TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
           G      I  +   D   Y+   +N+  ++   A L VE       
Sbjct: 59  GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL 104

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 96.7 bits (241), Expect = 1e-23
 Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 20/177 (11%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
            C I   P    + W +  + L    ++   +  +G   +L      Q  +G YTC   N
Sbjct: 28  SCQIVGRPLPD-IKWYRFGKELIQ--SRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN 84

Query: 134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKV--GESVDMHCEAQEAEGTQKPTITWQR 191
             G   +S ++ +     P F        +     G ++ +H       G   P +TW  
Sbjct: 85  EVGEVETSSKLLLQA--TPQFHPGYPLKEKYYGAVGSTLRLHVMY---IGRPVPAMTWFH 139

Query: 192 RDGVALPKN-RVKIV--GGNIT---IEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
                L  +  + I               R+   G Y+  +SN   T+     + ++
Sbjct: 140 -GQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 79.4 bits (196), Expect = 2e-17
 Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 14/149 (9%)

Query: 11  RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
           +  +  DG   TL +     +D G+Y C  +N +GE +   + L ++   +      ++ 
Sbjct: 53  KYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVE-TSSKLLLQATPQFHPGYPLKE 111

Query: 68  LPFRLQG---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVN- 120
             +   G    +       P    +TW   ++LL+   +++I +        L+   V  
Sbjct: 112 KYYGAVGSTLRLHVMYIGRPVPA-MTWFHGQKLLQN--SENITIENTEHYTHLVMKNVQR 168

Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLVR 149
           + H G+Y     N  GT  +   +E+  +
Sbjct: 169 KTHAGKYKVQLSNVFGTVDAILDVEIQDK 197

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 96.4 bits (240), Expect = 2e-23
 Identities = 46/192 (23%), Positives = 73/192 (38%), Gaps = 23/192 (11%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVN----QNHQGRYTCTPY 132
            C  + +P    + W K+ + +   Q++  V+ Q G +   R+           Y C   
Sbjct: 27  YCAARGDPPPS-IVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAE 85

Query: 133 NAHGTQGS-SGQMEVLV-----RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
           N  G   S    + +          P  T  P       VG +V M C+A    G   P 
Sbjct: 86  NGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE-VGHTVLMTCKAI---GNPTPN 141

Query: 187 ITWQRRDGVALPKN--RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVVE- 242
           I W + +   +  +  R  +  G + IE  R  D G YECV  N + T   +A  L V+ 
Sbjct: 142 IYWIK-NQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200

Query: 243 ---GTQPHAPYN 251
              GT+ H  ++
Sbjct: 201 RRVGTKHHHHHH 212

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 93.7 bits (233), Expect = 2e-22
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 15/162 (9%)

Query: 9   ETRVVIKKDGTLVI----NPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPT 64
               V+++ G + I          D   Y C   NG+G+  +A A L +    K      
Sbjct: 52  SRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFP 111

Query: 65  VQYLPFRLQGVV-------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT 117
           V       + +         C    NPT   + W K++  ++   +     +++G L   
Sbjct: 112 VITQGPGTRVIEVGHTVLMTCKAIGNPTPN-IYWIKNQTKVDM--SNPRYSLKDGFLQIE 168

Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
              +  QG+Y C   N+ GT+ S     + V+     T    
Sbjct: 169 NSREEDQGKYECVAENSMGTEHSKA-TNLYVKVRRVGTKHHH 209

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 99.9 bits (249), Expect = 3e-23
 Identities = 45/274 (16%), Positives = 79/274 (28%), Gaps = 40/274 (14%)

Query: 186 TITWQRRD-GVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244
            IT      G+ + ++ V    G  T+ GL       Y+  V   +     A   + + T
Sbjct: 128 RITVVAAGEGIPIFEDFVDSSVGYYTVTGLEP--GIDYDISVITLINGGESAPTTLTQQT 185

Query: 245 QPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
               P ++        ++ + W P  S       N+++ Y    N++ +      P    
Sbjct: 186 AVPPPTDLRFTNIGPDTMRVTWAPPPSIDLT---NFLVRYSPVKNEEDVAELSISPSDNA 242

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISW 362
           + +  L P T Y   V    E  +                  P  +  +++  N F + W
Sbjct: 243 VVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQK----TGLDSPTGIDFSDITANSFTVHW 298

Query: 363 QPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS 422
             P    + I  Y I                          +  +           P   
Sbjct: 299 IAP---RATITGYRI-------------------------RHHPEHFSGRPREDRVPHSR 330

Query: 423 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
             IT+  LTP T Y   +V  N   +  L     
Sbjct: 331 NSITLTNLTPGTEYVVSIVALNGREESPLLIGQQ 364

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 96.0 bits (239), Expect = 5e-22
 Identities = 39/268 (14%), Positives = 71/268 (26%), Gaps = 40/268 (14%)

Query: 186 TITWQRRDGVALPKNRVKIVGGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
            IT    +G         +       T + L       Y   V                 
Sbjct: 36  RITTTPTNGQQGNSLEEVVHADQSSCTFDNLSP--GLEYNVSVYTVKDDKESVPISDTII 93

Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
            +     +++ V  T+ S+ L W P  S        Y I     G    +          
Sbjct: 94  PEVPQLTDLSFVDITDSSIGLRWTPLNSSTII---GYRITVVAAGEGIPIFEDFVDSSVG 150

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVIS 361
             T+  L P   Y+  V+     G+   + +           PP ++  T +  +   ++
Sbjct: 151 YYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTA----VPPPTDLRFTNIGPDTMRVT 206

Query: 362 WQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG 421
           W PP   +  +  +L+                          Y    N++ +      P 
Sbjct: 207 WAPP--PSIDLTNFLV-------------------------RYSPVKNEEDVAELSISPS 239

Query: 422 STQITINRLTPATTYEFQVVGKNELGDG 449
              + +  L P T Y   V    E  + 
Sbjct: 240 DNAVVLTNLLPGTEYVVSVSSVYEQHES 267

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 94.1 bits (234), Expect = 3e-21
 Identities = 28/215 (13%), Positives = 53/215 (24%), Gaps = 38/215 (17%)

Query: 246 PHAPYN--ITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT-PPGST 302
              P N  +        +T+ W    +        Y I       +    +        +
Sbjct: 3   LSPPTNLHLEANPDTGVLTVSWERSTTPDIT---GYRITTTPTNGQQGNSLEEVVHADQS 59

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVIS 361
             T + L+P   Y   V       D   S  +      P+     ++S  ++  +   + 
Sbjct: 60  SCTFDNLSPGLEYNVSVYTVK---DDKESVPISDTII-PEVPQLTDLSFVDITDSSIGLR 115

Query: 362 WQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG 421
           W P    +S I  Y I                              G    +        
Sbjct: 116 WTPL--NSSTIIGYRI-------------------------TVVAAGEGIPIFEDFVDSS 148

Query: 422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
               T+  L P   Y+  V+     G+   + +  
Sbjct: 149 VGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQ 183

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 22/110 (20%), Positives = 32/110 (29%), Gaps = 8/110 (7%)

Query: 240 VVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP 298
             + T   +P  I     T  S T+ W+            Y I +  +           P
Sbjct: 272 GRQKTGLDSPTGIDFSDITANSFTVHWIAP-RATIT---GYRIRHHPEHFSGRPREDRVP 327

Query: 299 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
                IT+  LTP T Y   +V  N   +  L  I    T         +
Sbjct: 328 HSRNSITLTNLTPGTEYVVSIVALNGREESPLL-IGQQST--VSAHHHHH 374

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 17/120 (14%), Positives = 26/120 (21%), Gaps = 31/120 (25%)

Query: 343 PGPPRNVSVTEV--NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
             PP N+ +          +SW+        I  Y I                       
Sbjct: 3   LSPPTNLHLEANPDTGVLTVSWERS--TTPDITGYRITTTPTN----------------- 43

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
                  G +      V     +  T + L+P   Y   V       D   S  +     
Sbjct: 44  -------GQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVK---DDKESVPISDTII 93

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 95.7 bits (238), Expect = 5e-23
 Identities = 47/193 (24%), Positives = 73/193 (37%), Gaps = 26/193 (13%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQ----NHQGRYTCTPY 132
            C    +P  + + W K  + +   Q  +++   +GS    R+        +  Y C   
Sbjct: 27  ICQATGDPRPK-IVWNKKGKKVSN-QRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVAS 84

Query: 133 NAHGTQGSSGQMEVLV-----RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTI 187
           N  G    S ++ VL      R  P   + P+     +   +  M C A    G   P I
Sbjct: 85  NNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKV-VERTRTATMLCAAS---GNPDPEI 140

Query: 188 TWQRRDGVALP----KNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQA-AQ 238
           TW + D + +       R+K +     G + IE     D G YECV +N   T   A A 
Sbjct: 141 TWFK-DFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPAN 199

Query: 239 LVVEGTQPHAPYN 251
           L V GT  H  ++
Sbjct: 200 LYVRGT-KHHHHH 211

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 81.8 bits (202), Expect = 4e-18
 Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 18/167 (10%)

Query: 4   KVGSLETRVVIKKDGT---LVINPVGS-DDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKV 59
           KV +    V+   DG+   L I P+ +  D  +Y C  SN +GE       L V    ++
Sbjct: 46  KVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISV-STRLTVLREDQI 104

Query: 60  TFTPTVQYLPFRLQGVV-------QCHIKANPTFQYVTWTKDKRLLEP----YQTKDIVV 108
                   +  +L+ V         C    NP  + +TW KD   ++      + K +  
Sbjct: 105 PRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPE-ITWFKDFLPVDTSNNNGRIKQLRS 163

Query: 109 MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFT 155
              G+L   +  ++ QG+Y C   N+ GT+ S+    + VR      
Sbjct: 164 ESIGALQIEQSEESDQGKYECVATNSAGTRYSA-PANLYVRGTKHHH 209

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 64.1 bits (156), Expect = 5e-12
 Identities = 29/109 (26%), Positives = 40/109 (36%), Gaps = 12/109 (11%)

Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-- 205
              PP FT  P        G      C   +A G  +P I W  + G  +   R +++  
Sbjct: 3   GETPPRFTRTPVDQ-TGVSGGVASFIC---QATGDPRPKIVW-NKKGKKVSNQRFEVIEF 57

Query: 206 ----GGNITIEGLRRV-DFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
               G  + I+ LR   D   YECV SN V  I  + +L V        
Sbjct: 58  DDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPR 106

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 96.4 bits (240), Expect = 1e-22
 Identities = 29/215 (13%), Positives = 56/215 (26%), Gaps = 36/215 (16%)

Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
                P  I     ++    +EW P            ++ Y   G +         P  +
Sbjct: 13  PVIDGPTQILVRDVSDTVAFVEWTPP----RAKVDFILLKYGLVGGEGGKTTFRLQPPLS 68

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVIS 361
           Q ++  L P + YE  +       +   S+             P+N+ V         + 
Sbjct: 69  QYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTE----IDAPKNLRVGSRTATSLDLE 124

Query: 362 WQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG 421
           W       +  Q Y + Y T                               + +P     
Sbjct: 125 WDNS---EAEAQEYKVVYSTLAG-----------------------EQYHEVLVPKGIGP 158

Query: 422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
           +T+ T+  L P T Y   +         + + +  
Sbjct: 159 TTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNA 193

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 91.8 bits (228), Expect = 5e-21
 Identities = 43/277 (15%), Positives = 81/277 (29%), Gaps = 45/277 (16%)

Query: 186 TITWQRRDGVALPKNRVKIVGGN-ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244
            + +    G             +  +++ LR      YE  +S    T    A      T
Sbjct: 46  LLKYGLVGGEGGKTTFRLQPPLSQYSVQALRP--GSRYEVSISAVRGTNESDASSTQFTT 103

Query: 245 QPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW--LPIPVTPPGS 301
           +  AP N+   + T  S+ LEW    +      Q Y + Y     + +  + +P     +
Sbjct: 104 EIDAPKNLRVGSRTATSLDLEWDNSEAEA----QEYKVVYSTLAGEQYHEVLVPKGIGPT 159

Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVI 360
           T+ T+  L P T Y   +          +   +  +T+      PR++ VT  +     +
Sbjct: 160 TKTTLTDLVPGTEYGVGISAVMNSKQS-IPATMNARTE---LDSPRDLMVTASSETSISL 215

Query: 361 SWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP 420
            W      +  I +Y I +       +                               P 
Sbjct: 216 IWTKA---SGPIDHYRITFTPSSGISS---------------------------EVTVPR 245

Query: 421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
             T  T+  L P   Y   +  +      + S +   
Sbjct: 246 DRTSYTLTDLEPGAEYIISITAERGRQQSLESTVDAF 282

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 29/118 (24%)

Query: 341 PKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
           P    P  + V +V++    + W PP  +   + + L+                      
Sbjct: 13  PVIDGPTQILVRDVSDTVAFVEWTPPRAK---VDFILL---------------------- 47

Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
              +Y   G +         P  +Q ++  L P + YE  +       +   S+    
Sbjct: 48  ---KYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFT 102

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 94.2 bits (234), Expect = 2e-22
 Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 22/190 (11%)

Query: 78  CHIKANPTFQYVTWTKDKRLLEPYQTKDI-VVMQNGSLLFTRVNQN----HQGRYTCTPY 132
           C ++  P    + W KD   +   + K   V  ++G+L F R  Q       G Y C   
Sbjct: 31  CKVEGKPEPT-IEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAK 89

Query: 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
           N  G   S      +      F ++P+       GE+  + C     +G  +PT+ W + 
Sbjct: 90  NRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA-KGETALLECG--PPKGIPEPTLIWIK- 145

Query: 193 DGVALPK---------NRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVV 241
           DGV L           +RV+IV GGN+ I  +  +D G Y+C+  N V T     A+L+V
Sbjct: 146 DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV 205

Query: 242 EGTQPHAPYN 251
           +  +  A ++
Sbjct: 206 Q-VKAAAHHH 214

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 77.6 bits (191), Expect = 1e-16
 Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 14/165 (8%)

Query: 6   GSLETRVVIKKDGTL----VINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV-EFPAKVT 60
              ++  V  KDG L     +      D G Y C   N +G+  +  A L +        
Sbjct: 53  NEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFR 112

Query: 61  FTPTVQYLPFRLQGVVQCH-IKANPTFQYVTWTKDKRLLEPYQTKD------IVVMQNGS 113
             P    +      +++C   K  P    + W KD   L+  +         + ++  G+
Sbjct: 113 VEPKDTRVAKGETALLECGPPKGIPEPT-LIWIKDGVPLDDLKAMSFGASSRVRIVDGGN 171

Query: 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKP 158
           LL + V    +G Y C   N  GT+ SS   +++V+   A     
Sbjct: 172 LLISNVEPIDEGNYKCIAQNLVGTRESSY-AKLIVQVKAAAHHHH 215

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 94.2 bits (234), Expect = 2e-22
 Identities = 41/193 (21%), Positives = 69/193 (35%), Gaps = 26/193 (13%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDI--VVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
           +C    NP    + W K+ +  +         V  Q+ SL+   V  + +G YTC   N 
Sbjct: 40  RCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 98

Query: 135 HGTQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR 191
           +G+   +  ++V+ R   +P      P       VG  V+  C+        +P I W +
Sbjct: 99  YGSINHTYHLDVVERSRHRPILQAGLPANAS-TVVGGDVEFVCKVY---SDAQPHIQWIK 154

Query: 192 RDGVA--------------LPKNRVKIVG-GNITIEGLRRVDFGYYECVVSNEVATIVQA 236
                              L  + +       + +  +   D G Y C VSN +    Q+
Sbjct: 155 HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQS 214

Query: 237 AQLVVEGTQPHAP 249
           A L V   +  AP
Sbjct: 215 AWLTVLP-KQQAP 226

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 82.3 bits (203), Expect = 4e-18
 Identities = 31/169 (18%), Positives = 48/169 (28%), Gaps = 24/169 (14%)

Query: 6   GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTV 65
             +    V  +  +L++  V   D G Y C V N  G       +L+V    +    P +
Sbjct: 64  HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN-HTYHLDVV--ERSRHRPIL 120

Query: 66  QYLPFRLQGVV-------QCHIKANPTFQYVTWTKDKRLLEPYQTKD------------I 106
           Q         V        C + ++     + W K           D            I
Sbjct: 121 QAGLPANASTVVGGDVEFVCKVYSDAQPH-IQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179

Query: 107 VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR-KPPAF 154
                  L    V +   G Y C   N  G    S  + VL + + P  
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGR 228

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 70.7 bits (173), Expect = 3e-14
 Identities = 42/228 (18%), Positives = 72/228 (31%), Gaps = 37/228 (16%)

Query: 148 VRKPPAFTIKPE---AMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN---- 200
            ++ P +T   +    ++      +V   C A    G   PT+ W + +G    +     
Sbjct: 12  NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPA---GGNPMPTMRWLK-NGKEFKQEHRIG 67

Query: 201 --RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG---- 254
             +V+    ++ +E +   D G Y CVV NE  +I     L V     H P    G    
Sbjct: 68  GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPAN 127

Query: 255 --VATEFSVTLEWLPGYSGGPDLKQNYVIWYRE------QGNKDWLPIPVTPP------- 299
                   V               Q ++ W +       +   D LP             
Sbjct: 128 ASTVVGGDVEFVCKV--YSDA---QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSS 182

Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPR 347
            +  + +  +T A   E+     N +G    S  + V  K   PG  +
Sbjct: 183 NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 98.9 bits (245), Expect = 2e-22
 Identities = 40/287 (13%), Positives = 86/287 (29%), Gaps = 44/287 (15%)

Query: 7   SLETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF 61
           + E R+++         ++VI  +  +D+G Y+C   +     + +       F  + + 
Sbjct: 274 AFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEEST 333

Query: 62  TPTVQYLPFRLQG---VVQCHIKANPTFQYVTWTK---------------DKRLLEPYQT 103
            P    +   + G    V C      +     W                 +  +   Y+ 
Sbjct: 334 IPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEG 393

Query: 104 KDIVVMQNGSLLFT----RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
           +  ++ + G+  FT    ++     G Y C                 +        +K  
Sbjct: 394 RLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTL----WRTTVEIKIIEGEPNLKVP 449

Query: 160 AMYQRKVGESVDMHCE-AQEAEGTQKPTITWQRRDGVALPKNRVKIVG-----------G 207
                 +GE++ + C    +    +K    W      ALP                    
Sbjct: 450 GNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLV 509

Query: 208 NITIEGLRRVDFGYYECVVSNEVATIVQ-AAQLVVEGTQPHAPYNIT 253
           ++T+  + R D G+Y C V          A  + VE  +     +++
Sbjct: 510 SLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVS 556

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 86.6 bits (213), Expect = 3e-18
 Identities = 59/403 (14%), Positives = 112/403 (27%), Gaps = 71/403 (17%)

Query: 11  RVVIKKDG------TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPT 64
           R+ +   G      ++VIN +   D+G Y+C+  +     +   A L V  P        
Sbjct: 172 RIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNK-KNADLQVLKPEPELVYED 230

Query: 65  V--------QYLP-FRLQGVVQCHIKANPTFQYVTWTKDKRLLEP---YQTKDIVVMQNG 112
           +           P         C   +      V  T  KR                 + 
Sbjct: 231 LRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSF 290

Query: 113 SLLFTRVNQNHQGRYTCTPYNAHG-TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
           S++ T + +   GRY C  ++     +GS  Q   L     +   +   + +   G SV 
Sbjct: 291 SVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVA 350

Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN----------------------- 208
           + C        +  +I +      A       +V                          
Sbjct: 351 VLC---PYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFT 407

Query: 209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL--EWL 266
           + +  L   D G+Y C+ + +          ++EG                ++ +   + 
Sbjct: 408 VILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFP 467

Query: 267 PGYSGGPDLKQNYVIWYREQGN-KDWLPIPVTPPGSTQI-----------TINRLTP--A 312
             +S           W +        LP     P    +           T+N +T    
Sbjct: 468 CKFSSYE------KYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADE 521

Query: 313 TTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN 355
             Y    V +        +  V V  +  K    R+VS+ + +
Sbjct: 522 GWYWC-GVKQGHFYGETAAVYVAV--EERKAAGSRDVSLAKAD 561

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 84.3 bits (207), Expect = 1e-17
 Identities = 51/326 (15%), Positives = 96/326 (29%), Gaps = 46/326 (14%)

Query: 19  TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQC 78
            + I  +  DDSG Y C +             L V     +     V  +       + C
Sbjct: 76  VVNIAQLSQDDSGRYKCGLGINSRGLS-FDVSLEVSQGPGLLNDTKVYTVDLGRTVTINC 134

Query: 79  HIKANPTFQYVTWTKDKRLLEPYQTKD-------------IVVMQNGSLLFT----RVNQ 121
             K     +  +  K   L                     + +   G LLF+    ++  
Sbjct: 135 PFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRL 194

Query: 122 NHQGRYTCTPYNAHGTQGSSGQMEVL------VRKPPAFTIKPEAMYQRKVGESVDMHCE 175
           +  G+Y C   +   +   +  ++VL      V +    ++        +V       C 
Sbjct: 195 SDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLC- 253

Query: 176 AQEAEGTQKPTITWQRRDGVALPKN-RVKIVGGN------ITIEGLRRVDFGYYECVVSN 228
                  +   +        A     R+ +   +      + I GLR+ D G Y C   +
Sbjct: 254 --RQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHS 311

Query: 229 EVATIVQAAQLV------VEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIW 282
           +      +           E T P +P  + GVA   SV +     Y+      ++   W
Sbjct: 312 DGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGS-SVAVLCP--YNRKE--SKSIKYW 366

Query: 283 YREQGNKDWL-PIPVTPPGSTQITIN 307
              +G ++   P+ V   G  +    
Sbjct: 367 CLWEGAQNGRCPLLVDSEGWVKAQYE 392

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 54.2 bits (129), Expect = 6e-08
 Identities = 43/303 (14%), Positives = 87/303 (28%), Gaps = 43/303 (14%)

Query: 89  VTWTKDKRLLEPYQTKDIVVMQNGSLLFT----RVNQNHQGRYTCTPYNAHGTQGSSGQM 144
              + +  +   Y  +  +     +  F     +++Q+  GRY C         G S  +
Sbjct: 48  TLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSR--GLSFDV 105

Query: 145 EVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP------ 198
            + V + P      + +Y   +G +V ++C   + E  QK      ++ G+         
Sbjct: 106 SLEVSQGPGLLNDTK-VYTVDLGRTVTINCPF-KTENAQKRKS-LYKQIGLYPVLVIDSS 162

Query: 199 -------KNRVKIV-------GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244
                    R+++          ++ I  LR  D G Y C   ++  +  + A L V   
Sbjct: 163 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP 222

Query: 245 QPHAPYNITGVATEFSVTLEWLPGYSG-----GPDLKQNYVIWYREQGNKDWLPIPVT-- 297
           +P   Y     +  F   L                 +   V+              +   
Sbjct: 223 EPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLN 282

Query: 298 ---PPGSTQITINRLTPATTYEFQVVGKNELGDGM----LSNIVVVKTKGPKPGPPRNVS 350
                GS  + I  L       +     ++          +  + V  +   P  P  V 
Sbjct: 283 PQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVK 342

Query: 351 VTE 353
              
Sbjct: 343 GVA 345

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 45.0 bits (105), Expect = 4e-05
 Identities = 22/149 (14%), Positives = 37/149 (24%), Gaps = 23/149 (15%)

Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--------------KNRVKIVGG---- 207
            G SV + C        +     W R+                      R  +       
Sbjct: 14  EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73

Query: 208 --NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEW 265
              + I  L + D G Y+C +      +     L V    P    +      +   T+  
Sbjct: 74  TFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVS-QGPGLLNDTKVYTVDLGRTVTI 132

Query: 266 LPGYSGGPDLKQNYVIWYREQGNKDWLPI 294
              +       Q     Y++ G    L I
Sbjct: 133 NCPFKTEN--AQKRKSLYKQIGLYPVLVI 159

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 93.0 bits (231), Expect = 3e-22
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 24/177 (13%)

Query: 77  QCHIKANPT-FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135
           QC++ ++     Y  WTK+   L            N      +      G Y C     H
Sbjct: 24  QCNLTSSSHTLMYSYWTKNGVELTA----TRKNASNMEYRINKPRAEDSGEYHCV---YH 76

Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
                     + V+  P  T    +  +   G+   M+C++    G   P   W++    
Sbjct: 77  FVSAPKANATIEVKAAPDITGHKRSENKN-EGQDAMMYCKS---VGYPHPEWMWRK-KEN 131

Query: 196 ALPKN------RVKIV----GGNITIEGLR-RVDFGYYECVVSNEVATIVQAAQLVV 241
            + +       R  I+       + I  L+   D G YEC  +N + +   +  L V
Sbjct: 132 GVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 74.9 bits (184), Expect = 6e-16
 Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 10/148 (6%)

Query: 8   LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
           L        +    IN   ++DSG Y C V + +  P+ A A + V+    +T     + 
Sbjct: 46  LTATRKNASNMEYRINKPRAEDSGEYHC-VYHFVSAPK-ANATIEVKAAPDITGHKRSEN 103

Query: 68  LPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP---YQTKDIVVMQNG---SLLFTRVN- 120
                  ++ C     P  +   W K +  +       +    ++       L    +  
Sbjct: 104 KNEGQDAMMYCKSVGYPHPE-WMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQI 162

Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
               G Y C   N+ G+   S  + V V
Sbjct: 163 TEDPGEYECNATNSIGSASVSTVLRVRV 190

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 11/118 (9%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ-RRDGVALPKNRVKIVGGNI 209
            P      E +  R     V + C       +    +     ++GV L   R        
Sbjct: 3   EPRIVTSEEVI-IRDSLLPVTLQCNL---TSSSHTLMYSYWTKNGVELTATRKNASNMEY 58

Query: 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH---APYNITGVATEFSVTLE 264
            I   R  D G Y CV  + V+     A + V+   P       +           + 
Sbjct: 59  RINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA-APDITGHKRSEN-KNEGQDAMMY 113

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 92.3 bits (229), Expect = 6e-22
 Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 19/164 (11%)

Query: 89  VTWTKDKRLLEPYQTKDI----------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138
           V W +D ++LE   +               +    L  T +  +  G+Y C  +  H T 
Sbjct: 35  VHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTF 94

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVAL 197
            S     V +   P F  +PE           ++ C+AQ   G  +P  + W  +D V L
Sbjct: 95  VSQ-PGYVGLEGLPYFLEEPEDR-TVAANTPFNLSCQAQ---GPPEPVDLLW-LQDAVPL 148

Query: 198 PKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
                     ++ + GL       + C   N           + 
Sbjct: 149 ATAPGHGPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATIT 190

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 82.3 bits (203), Expect = 2e-18
 Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 8/144 (5%)

Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL 68
           + +        L I  +   D+G Y C V  G     +   Y+ +E        P  + +
Sbjct: 59  DEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTV 118

Query: 69  PFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT 128
                  + C  +  P    + W +D   L              SL    +N+     ++
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGP----QRSLHVPGLNK--TSSFS 172

Query: 129 CTPYNAHGTQGSSGQMEVLVRKPP 152
           C  +NA G   S      +   P 
Sbjct: 173 CEAHNAKGVTTSRTA--TITVLPQ 194

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 59.9 bits (145), Expect = 9e-11
 Identities = 41/207 (19%), Positives = 68/207 (32%), Gaps = 37/207 (17%)

Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN--------- 200
           +   F   P  +     G +  + C+ Q  +G   P + W  RDG  L            
Sbjct: 1   EESPFVGNPGNI-TGARGLTGTLRCQLQ-VQGE-PPEVHW-LRDGQILELADSTQTQVPL 56

Query: 201 -----RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVVEGTQPH---APYN 251
                   IV   + I  L+  D G Y+C+V     T V Q   + +EG  P+    P +
Sbjct: 57  GEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG-LPYFLEEPED 115

Query: 252 ITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ--ITINRL 309
            T  A      L       G P+     ++W      +D +P+   P    Q  + +  L
Sbjct: 116 RTVAANT-PFNLSCQA--QGPPEPVD--LLWL-----QDAVPLATAPGHGPQRSLHVPGL 165

Query: 310 TPATTYEFQVVGKNELGDGMLSNIVVV 336
              +++       N  G        + 
Sbjct: 166 NKTSSF--SCEAHNAKGVTTSRTATIT 190

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 96.6 bits (239), Expect = 1e-21
 Identities = 46/281 (16%), Positives = 84/281 (29%), Gaps = 38/281 (13%)

Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYEC 224
             G ++ + C +          I    R  + L    V I   NI +             
Sbjct: 216 LAGSNMTICCMSPT--KVLSGQIGNTLRPLIHLYGQTVAIHILNIPVS---ENSGTNIIF 270

Query: 225 VVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEF-SVTLEWLPGYSGGP--DLKQNYVI 281
           +  ++V   V  A        P  P  ++    +   +   W PG   G        Y +
Sbjct: 271 ITDDDVYGTVVFAGYP-----PDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTL 325

Query: 282 WYREQGNKDWLPIPVTPP-GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG 340
           +    G              + ++ +        + F + G+N LG    S +V+  T+ 
Sbjct: 326 FESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ-SAVVINVTER 384

Query: 341 PKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
             P  P ++ V ++N+  V  SW  P     +     I+     S K             
Sbjct: 385 VAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKK------------- 431

Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
                          I      +  + +++L P T Y F+V
Sbjct: 432 ---------EVRNATIRGAEDSTYHVAVDKLNPYTAYTFRV 463

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 41.5 bits (96), Expect = 5e-04
 Identities = 21/165 (12%), Positives = 41/165 (24%), Gaps = 34/165 (20%)

Query: 287 GNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
           GN     I +    +  I I  +  +      ++   +           V   G  P  P
Sbjct: 237 GNTLRPLIHLYGQ-TVAIHILNIPVSENSGTNIIFITDDDVYG-----TVVFAGYPPDVP 290

Query: 347 RNVSVTEVNNG-FVISWQPPLE---RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402
           + +S    +    + SW P             Y +     G                   
Sbjct: 291 QKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAV--------------- 335

Query: 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 447
                    +  I      + ++ +        + F + G+N LG
Sbjct: 336 ---------FHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLG 371

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 91.0 bits (226), Expect = 1e-21
 Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 16/173 (9%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTP 131
            + C ++       + W KD  +++      I V +    G L    V ++  GRY C  
Sbjct: 21  KLNCSVEGMEEPD-IQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQV 79

Query: 132 YNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQ 190
            +   T+ S   + + V   P FT++P+ +          + CEA    G  +P TI W 
Sbjct: 80  EDGGETEISQ-PVWLTVEGVPFFTVEPKDLAVP-PNAPFQLSCEAV---GPPEPVTIVW- 133

Query: 191 RRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVVE 242
            R    +             +          + C   N       + A + ++
Sbjct: 134 WRGTTKIGGP----APSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 82.9 bits (205), Expect = 8e-19
 Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 8/121 (6%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
            G L +  V   D+G Y C+V +G     +   +L VE     T  P    +P      +
Sbjct: 59  IGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQL 118

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
            C     P    + W +    +                +           ++C  +N  G
Sbjct: 119 SCEAVGPPEPVTIVWWRGTTKIGG--------PAPSPSVLNVTGVTQSTMFSCEAHNLKG 170

Query: 137 T 137
            
Sbjct: 171 L 171

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 10  TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
           T++        V+N  G   S ++ CE  N  G   +  A ++++
Sbjct: 138 TKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 91.9 bits (228), Expect = 1e-21
 Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 25/161 (15%)

Query: 10  TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV---------------E 54
             +       L+ N V   D+G Y+C V+N      +  + L+V               E
Sbjct: 57  KEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSE 116

Query: 55  FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSL 114
              ++   PT Q L      V+QC    +P   Y  W K++  L                
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHY-QWFKNELPLTHE--------TKKLY 167

Query: 115 LFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFT 155
           +   V+  HQG Y C  YN   +Q S   +E+++ +     
Sbjct: 168 MVPYVDLEHQGTYWCHVYNDRDSQDSKK-VEIIIDELNNLG 207

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 87.6 bits (217), Expect = 4e-20
 Identities = 35/240 (14%), Positives = 72/240 (30%), Gaps = 44/240 (18%)

Query: 41  IGEPQAAQAYLNVEFPAKVTFT--PTVQYL----PFRLQGVVQCHIKANPTFQYVTWTKD 94
           +G       + +   P     T  P  + +      +L     C    +P  QY  W K 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLC----CRATGHPFVQY-QWFKM 55

Query: 95  KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS------------- 141
            + +    T          L+F  V+    G Y C   N    + S              
Sbjct: 56  NKEIPNGNT--------SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESF 107

Query: 142 -GQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN 200
              ++ +        ++P +  +   G ++ + C A    G+  P   W  ++ + L   
Sbjct: 108 QRSVDGVSESKLQICVEPTSQ-KLMPGSTLVLQCVAV---GSPIPHYQW-FKNELPLTHE 162

Query: 201 RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVVEGTQ-PHAPYNITGVATE 258
                     +  +     G Y C V N+  +   +  +++++       P N      +
Sbjct: 163 T----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTTDQ 218

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 75.7 bits (186), Expect = 6e-16
 Identities = 37/236 (15%), Positives = 69/236 (29%), Gaps = 42/236 (17%)

Query: 139 GSSGQME----VLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG 194
           GSS         LV +    T+ PE+      G+ V + C A    G       W  +  
Sbjct: 2   GSSHHHHHHSSGLVPRGSKITVNPESK-AVLAGQFVKLCCRA---TGHPFVQYQW-FKMN 56

Query: 195 VALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVVEGTQPHAPYNIT 253
             +P          +    +   D G+Y C V+N         +QL V         ++ 
Sbjct: 57  KEIPNGN----TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVD 112

Query: 254 GVATEF----------------SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT 297
           GV+                   ++ L+ +    G P        W++ +       +P+T
Sbjct: 113 GVSESKLQICVEPTSQKLMPGSTLVLQCVA--VGSPIPH---YQWFKNE-------LPLT 160

Query: 298 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTE 353
                   +  +       +     N+        + ++  +    G P N   T 
Sbjct: 161 HETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTT 216

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 89.0 bits (221), Expect = 1e-21
 Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 26/136 (19%)

Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGS 384
           G    S    + +    P  PR+V    V++ FV +SW+PP E    IQ + +       
Sbjct: 1   GSSGSSGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTV------- 53

Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 444
                              +  +G+     +  T PGS Q+T+  L P   Y F+VV  N
Sbjct: 54  ------------------FFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYN 95

Query: 445 ELGDGMLSNIVVVKTK 460
           E G G  S  + V T+
Sbjct: 96  EWGPGESSQPIKVATQ 111

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 80.9 bits (200), Expect = 8e-19
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P AP ++  V  +   V L W P      ++ Q + +++  +G+     +  T PGS Q+
Sbjct: 18  PSAPRDVVPVLVSSRFVRLSWRPPAEAKGNI-QTFTVFFSREGDNRERALNTTQPGSLQL 76

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
           T+  L P   Y F+VV  NE G G  S  + V T+       
Sbjct: 77  TVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESGPSS 118

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 93.2 bits (231), Expect = 2e-21
 Identities = 36/240 (15%), Positives = 67/240 (27%), Gaps = 28/240 (11%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP-AKVTFTPTVQYLPF--RLQ 73
              L +  +   D+G Y C  ++  G     +  L +  P   V F P      F    +
Sbjct: 50  SSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTE 109

Query: 74  G---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
                + C +  +P    VT  + K          + V  +    F+ +       Y C 
Sbjct: 110 ITEITIPCRV-TDPQLV-VTLHEKKG------DVALPVPYDHQRGFSGIF--EDRSYICK 159

Query: 131 PYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ 190
                    S       ++               + GE++ + C      G +     W 
Sbjct: 160 TTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMC---IVIGNEVVNFEWT 216

Query: 191 --RRDGVALPKNRVKIVGGN-------ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
             R++   L +     +          + I      D G Y C V+  V        + +
Sbjct: 217 YPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 70.5 bits (172), Expect = 1e-13
 Identities = 23/178 (12%), Positives = 49/178 (27%), Gaps = 15/178 (8%)

Query: 89  VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
           V W +  +       K      +  L  T +     G Y CT  ++ G +    +   + 
Sbjct: 28  VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIF 87

Query: 149 RKPPAFTIKPEAMYQRKV----GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI 204
              P     P    +  +       + + C   + +      +T   + G     +    
Sbjct: 88  VPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQ----LVVTLHEKKG-----DVALP 138

Query: 205 VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVT 262
           V  +         +   Y C  +     +   A  V       +  N++  A +  V 
Sbjct: 139 VPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVY--RLQVSSINVSVNAVQTVVR 194

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 65.9 bits (160), Expect = 3e-12
 Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 11/137 (8%)

Query: 25  VGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG---VVQCHIK 81
            G  +   Y+C+ + G  E  +   Y+     + +  +        R QG    + C + 
Sbjct: 148 SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVR-QGENITLMCIVI 206

Query: 82  ANPTFQYVTWTKD----KRLLEPYQ--TKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135
            N       WT       RL+EP      D+       L          G YTC    + 
Sbjct: 207 GNEVVN-FEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESV 265

Query: 136 GTQGSSGQMEVLVRKPP 152
                   + + V +  
Sbjct: 266 NDHQDEKAINITVVESG 282

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 10  TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
             +       L I     +DSG Y C V+  + + Q  +  +N+
Sbjct: 234 LDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQ-DEKAINI 276

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 90.5 bits (224), Expect = 4e-21
 Identities = 38/200 (19%), Positives = 63/200 (31%), Gaps = 16/200 (8%)

Query: 52  NVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQ--------T 103
               P K T +P     P  ++ ++            + ++ DK     Y         T
Sbjct: 17  TAYLPCKFTLSPE-DQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFT 75

Query: 104 KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQ 163
            + V   + S+  T +  +  G Y C    A G       + VLV   P+ T       +
Sbjct: 76  SNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV--KPSGTRCFVDGSE 133

Query: 164 RKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGY 221
             +G    + CE    EG+      WQ+                   I+++       G 
Sbjct: 134 E-IGNDFKLKCEP--KEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGT 190

Query: 222 YECVVSNEVATIVQAAQLVV 241
           Y C V N V +     +L V
Sbjct: 191 YSCTVQNRVGSDQCMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 77.0 bits (189), Expect = 2e-16
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 7/148 (4%)

Query: 7   SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
              +  V   D ++ +  +   D G Y C+V    G     +  L V      T      
Sbjct: 73  HFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANK-KFLLTVLVKPSGTRCFVDG 131

Query: 67  YLPFRLQGVVQCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQG 125
                    ++C  K  +   Q+  W K         T  +  M +  +     +  + G
Sbjct: 132 SEEIGNDFKLKCEPKEGSLPLQF-EWQKLSDSQTM-PTPWLAEMTSPVISVKNASSEYSG 189

Query: 126 RYTCTPYNAHGTQGSSGQMEVLVRKPPA 153
            Y+CT  N  G+     +++V+   PP+
Sbjct: 190 TYSCTVQNRVGSDQCMLRLDVV---PPS 214

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 49.3 bits (117), Expect = 5e-07
 Identities = 32/204 (15%), Positives = 57/204 (27%), Gaps = 35/204 (17%)

Query: 154 FTIK-PEAMYQRKVGESVDMHCEAQ-EAEGTQKPTITWQRRDG----------------- 194
            +I  PE   ++  GE+  + C+     E      I W                      
Sbjct: 1   LSITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKI 60

Query: 195 -----------VALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
                      V    N VK    +I +  L+  D G Y+C V        +   L V  
Sbjct: 61  YDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV 120

Query: 244 TQPHAPYNITGVATE-FSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
                   + G         L+  P   G   L+     W +   ++      +    S 
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEP-KEGSLPLQ---FEWQKLSDSQTMPTPWLAEMTSP 176

Query: 303 QITINRLTPATTYEFQVVGKNELG 326
            I++   +   +  +    +N +G
Sbjct: 177 VISVKNASSEYSGTYSCTVQNRVG 200

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 89.0 bits (221), Expect = 6e-21
 Identities = 34/216 (15%), Positives = 62/216 (28%), Gaps = 41/216 (18%)

Query: 243 GTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
           GT    P ++     TE +++L W             Y + Y     K        P  S
Sbjct: 4   GTDLDNPKDLEVSDPTETTLSLRWRRP----VAKFDRYRLTYVSPSGKKN--EMEIPVDS 57

Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVI 360
           T   +  L   T Y   +V +        S    +K      G P+ +S +++  N   +
Sbjct: 58  TSFILRGLDAGTEYTISLVAEKGRHK---SKPTTIKGSTV-VGSPKGISFSDITENSATV 113

Query: 361 SWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP 420
           SW PP    S +  Y + Y                                   +     
Sbjct: 114 SWTPP---RSRVDSYRVSYVPITG--------------------------GTPNVVTVDG 144

Query: 421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
             T+  + +L P   Y   ++      +    + ++
Sbjct: 145 SKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGIL 180

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 31/113 (27%)

Query: 338 TKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPE 396
             G     P+++ V++       + W+ P    +    Y + Y +    K   +      
Sbjct: 2   NAGTDLDNPKDLEVSDPTETTLSLRWRRP---VAKFDRYRLTYVSPSGKKNEME------ 52

Query: 397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
                                 P  ST   +  L   T Y   +V +      
Sbjct: 53  ---------------------IPVDSTSFILRGLDAGTEYTISLVAEKGRHKS 84

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 90.8 bits (225), Expect = 6e-21
 Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 26/188 (13%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--QNGSLLFTRVNQNHQGRYTCTPYNA 134
           +C    NPT   ++W K+ R          + +  Q  SL+   V  + +G YTC   N 
Sbjct: 36  RCPAAGNPTPS-ISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENK 94

Query: 135 HGTQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR 191
            G+   +  ++VL R   +P      P       +G  V+ HC+        +P I W +
Sbjct: 95  FGSIRQTYTLDVLERSPHRPILQAGLPANQ-TAVLGSDVEFHCKVY---SDAQPHIQWLK 150

Query: 192 R---DGVALPKNRVKIV-------------GGNITIEGLRRVDFGYYECVVSNEVATIVQ 235
               +G  +  +    V                + +  +   D G Y C  +N +    +
Sbjct: 151 HVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEK 210

Query: 236 AAQLVVEG 243
           A  L V G
Sbjct: 211 AFWLSVHG 218

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 83.8 bits (207), Expect = 2e-18
 Identities = 33/190 (17%), Positives = 56/190 (29%), Gaps = 31/190 (16%)

Query: 8   LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
           +    +  +  +LV+  V   D G Y C V N  G  +     L+V    +    P +Q 
Sbjct: 62  IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIR-QTYTLDVL--ERSPHRPILQA 118

Query: 68  LPFRLQGVV-------QCHIKANPTFQYVTWTKDKRLLEPYQTKD-------------IV 107
                Q  V        C + ++     + W K   +       D               
Sbjct: 119 GLPANQTAVLGSDVEFHCKVYSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKSWISES 177

Query: 108 VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVG 167
           V  +  L    V++   G Y C   N  G    +  + V    P A   +       +  
Sbjct: 178 VEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG--PRAAEEELV-----EAD 230

Query: 168 ESVDMHCEAQ 177
           E+  +H    
Sbjct: 231 EAGSVHHHHH 240

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 69.2 bits (169), Expect = 1e-13
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 15/123 (12%)

Query: 151 PPAFTIKPEAMYQR----KVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIV 205
            P +T +PE M ++        +V   C A    G   P+I+W + +G     ++R+  +
Sbjct: 11  APYWT-RPERMDKKLLAVPAANTVRFRCPA---AGNPTPSISWLK-NGREFRGEHRIGGI 65

Query: 206 -----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFS 260
                  ++ +E +   D G Y CVV N+  +I Q   L V    PH P    G+    +
Sbjct: 66  KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQT 125

Query: 261 VTL 263
             L
Sbjct: 126 AVL 128

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 4   KVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
            V        ++ D  L +  V   D G Y+C  +N IG  + A  +L+V  P       
Sbjct: 168 TVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKA-FWLSVHGPR----AA 222

Query: 64  TVQYLPFRLQGVVQCH 79
             + +     G V  H
Sbjct: 223 EEELVEADEAGSVHHH 238

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 85.1 bits (211), Expect = 4e-20
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 26/139 (18%)

Query: 323 NELGDGMLSN-IVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYR 380
             +GDG  S+  ++ +T    PGPP  +   EV    V + WQPP     +I  Y I +R
Sbjct: 7   GRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHR 66

Query: 381 TDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
            + +                          +   + V  P + Q T   L P + Y F++
Sbjct: 67  LNTT------------------------TANTATVEVLAPSARQYTATGLKPESVYLFRI 102

Query: 441 VGKNELGDGMLSNIVVVKT 459
             +   G G  +  +VV T
Sbjct: 103 TAQTRKGWGEAAEALVVTT 121

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 64.7 bits (158), Expect = 5e-13
 Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 6/104 (5%)

Query: 246 PHAPYNITGVA-TEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKD-WLPIPVTPPGST 302
           P  P  I        SV L W  P    G      Y I +R          + V  P + 
Sbjct: 28  PGPPMGILFPEVRTTSVRLIWQPPAAPNGI--ILAYQITHRLNTTTANTATVEVLAPSAR 85

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
           Q T   L P + Y F++  +   G G  +  +VV T+    GP 
Sbjct: 86  QYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKR-SGPS 128

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 83.7 bits (207), Expect = 6e-20
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN 208
            KP   T++ +     + G  V   C A+    +   T+ W R     LP +R     G 
Sbjct: 7   SKPIMVTVEEQRSQSVRPGADVTFICTAKS--KSPAYTLVWTRLHNGKLP-SRAMDFNGI 63

Query: 209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           +TI  ++  D G Y C  SN  A     A L V+
Sbjct: 64  LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 6  GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
          G L +R +   +G L I  V   D+G Y+C  SN     Q   A L+V+
Sbjct: 51 GKLPSRAMDF-NGILTIRNVQPSDAGTYVCTGSNMFAMDQ-GTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 40.6 bits (95), Expect = 8e-05
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 89  VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
           + WT+      P +     +  NG L    V  +  G Y CT  N       +  + V V
Sbjct: 43  LVWTRLHNGKLPSRA----MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 88.7 bits (220), Expect = 7e-20
 Identities = 33/221 (14%), Positives = 57/221 (25%), Gaps = 38/221 (17%)

Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI---PVTPPGST 302
            H   ++     +  + +EW        +  + Y++ +    +K                
Sbjct: 102 THPVMDLKAFPKDNMLWVEWTTP----RESVKKYILEWCVLSDKAPCITDWQQEDGTVHR 157

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVIS 361
                 L  +  Y   V      G G   +I     K   P     V   +V  N  V+ 
Sbjct: 158 TYLRGNLAESKCYLITVTPVYADGPGSPESI-KAYLKQAPPSKGPTVRTKKVGKNEAVLE 216

Query: 362 WQPP--LERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP 419
           W       +   I+ Y I YRT                                 + V  
Sbjct: 217 WDQLPVDVQNGFIRNYTIFYRTIIGN--------------------------ETAVNVDS 250

Query: 420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
              T+ T++ LT  T Y  ++    + G            K
Sbjct: 251 S-HTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTTPK 290

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 88.3 bits (219), Expect = 8e-20
 Identities = 27/200 (13%), Positives = 55/200 (27%), Gaps = 36/200 (18%)

Query: 260 SVTLEWLPG---YSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE 316
           +V L W       + G  L  +Y +      +       V    +T++T+N       Y 
Sbjct: 24  TVQLVWKTLPPFEANGKIL--DYEVTLTRWKS-HLQNYTVN---ATKLTVN--LTNDRYL 75

Query: 317 FQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYL 376
             +  +N +G    + + +         P  ++     +N   + W  P      ++ Y+
Sbjct: 76  ATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTP---RESVKKYI 132

Query: 377 IKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTY 436
           +++                         +     DW     T           L  +  Y
Sbjct: 133 LEWCVLSD--------------------KAPCITDWQQEDGT--VHRTYLRGNLAESKCY 170

Query: 437 EFQVVGKNELGDGMLSNIVV 456
              V      G G   +I  
Sbjct: 171 LITVTPVYADGPGSPESIKA 190

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 83.9 bits (208), Expect = 7e-20
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 29/136 (21%)

Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGS 384
           G    S  V  + +   PGP  N+     +   + ++W+ P+     IQ Y +       
Sbjct: 1   GSSGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKL------- 53

Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 444
                              Y E+G      + V+   S   TIN L   T Y F+VV  N
Sbjct: 54  ------------------YYMEKGTDKEQDVDVS---SHSYTINGLKKYTEYSFRVVAYN 92

Query: 445 ELGDGMLSNIVVVKTK 460
           + G G+ +  V V+T 
Sbjct: 93  KHGPGVSTPDVAVRTL 108

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P    N+   A +  S+T+ W    SG  ++ QNY ++Y E+G      + V+   S   
Sbjct: 18  PGPAPNLRAYAASPTSITVTWETPVSGNGEI-QNYKLYYMEKGTDKEQDVDVS---SHSY 73

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
           TIN L   T Y F+VV  N+ G G+ +  V V+T     GP 
Sbjct: 74  TINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSD-SGPS 114

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 87.3 bits (215), Expect = 3e-19
 Identities = 32/215 (14%), Positives = 71/215 (33%), Gaps = 22/215 (10%)

Query: 233 IVQAAQLVVEGTQPHAPYNITGVATEF-SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW 291
           +V+      EG    A   +  +      +   WLPG +  PD   NY ++Y  +  +  
Sbjct: 85  LVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNTSPDT--NYTLYYWHRSLEKI 142

Query: 292 LPIPVTPPGST------QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGP 345
                             +T  + +    +  Q++ K+  G    S  +V  T   KP P
Sbjct: 143 HQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDP 202

Query: 346 PRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYR 405
           P   +++  N+   + W+ P    S   +Y ++     +              ++   Y 
Sbjct: 203 PHIKNLSFHNDDLYVQWENPQNFISRCLFYEVEVNNSQT-------------ETHNVFYV 249

Query: 406 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
           ++   +          ++   +  + P T    ++
Sbjct: 250 QEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRI 284

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 30/220 (13%), Positives = 52/220 (23%), Gaps = 31/220 (14%)

Query: 244 TQPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           TQP    N++  V    +V   W P          N  +WY                  +
Sbjct: 3   TQPP-VTNLSVSVENLCTVIWTWNPP----EGASSNCSLWYFSHFGDKQDKKIAPETRRS 57

Query: 303 QITINRLTPATTYEFQVVGKNELGD--GMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFV 359
                 L      +          +   +L    +   +G        +     N +   
Sbjct: 58  IEVP--LNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMK 115

Query: 360 ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP 419
            SW P     S    Y + Y                E+         +G        +T 
Sbjct: 116 CSWLPG-RNTSPDTNYTLYYWHRSL-----------EKIHQCENIFREGQYFGCSFDLTK 163

Query: 420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
              +            +  Q++ K+  G    S  +V  T
Sbjct: 164 VKDSSF--------EQHSVQIMVKDNAGKIKPSFNIVPLT 195

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 87.5 bits (216), Expect = 4e-19
 Identities = 42/307 (13%), Positives = 82/307 (26%), Gaps = 51/307 (16%)

Query: 7   SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
                +  + +  L+I  +  +DS  Y+CEV +   E Q     L       +       
Sbjct: 56  DSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL------- 108

Query: 67  YLPFRLQG---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH 123
                LQG    +        +   V     +            +    +L  +++    
Sbjct: 109 -----LQGQSLTLTLESPPGSSPS-VQCRSPRGK---------NIQGGKTLSVSQLELQD 153

Query: 124 QGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIK-----------PEAMYQRKVGESVDM 172
            G +TCT             + VL  +  +  +            P A    K+  S ++
Sbjct: 154 SGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGEL 213

Query: 173 HCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG----------GNITIEGLRRVDFGYY 222
             +A E   + K  IT+  ++     K   +               +     +    G  
Sbjct: 214 WWQA-ERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNL 272

Query: 223 ECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEF---SVTLEWLPGYSGGPDLKQNY 279
              +  +   + Q   LVV         N+T          + L            K+  
Sbjct: 273 TLALEAKTGKLHQEVNLVVM-RATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK 331

Query: 280 VIWYREQ 286
            +W    
Sbjct: 332 AVWVLNP 338

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 77.9 bits (191), Expect = 7e-16
 Identities = 26/239 (10%), Positives = 60/239 (25%), Gaps = 49/239 (20%)

Query: 13  VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF--------------PAK 58
            I+   TL ++ +   DSG + C V     + +  +  + V                  +
Sbjct: 137 NIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVE-FKIDIVVLAFQKASSIVYKKEGEQVE 195

Query: 59  VTFTPTVQYLPFRLQGVVQCHIKANPTFQYV---TWTKDKRLLEPYQTKDIVVMQNG--- 112
            +F            G +    +   + +          +  ++       + M      
Sbjct: 196 FSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPL 255

Query: 113 --SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESV 170
             +L          G  T       G       + V+                R      
Sbjct: 256 HLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM----------------RATQLQK 299

Query: 171 DMHCEAQEAEGTQKPTITWQ-RRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSN 228
           ++ CE     G   P +    + +           V        +   + G ++C++S+
Sbjct: 300 NLTCEVW---GPTSPKLMLSLKLENKEAK------VSKREKAVWVLNPEAGMWQCLLSD 349

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 39/316 (12%), Positives = 85/316 (26%), Gaps = 50/316 (15%)

Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV------------------- 205
           K G++V++ C    A   +     W+  + + +  N+   +                   
Sbjct: 7   KKGDTVELTC---TASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 206 --GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTL 263
                + I+ L+  D   Y C V ++   +     LV   T     + + G     S+TL
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQKEEV---QLLVFGLTANSDTHLLQGQ----SLTL 116

Query: 264 EWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 323
                   G       V     +G            G   +++++L    +  +      
Sbjct: 117 TLE--SPPGSSPS---VQCRSPRGKN--------IQGGKTLSVSQLELQDSGTWTCTVLQ 163

Query: 324 ELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDG 383
                     +VV            V   E       S+        L     + ++ + 
Sbjct: 164 NQKKVEFKIDIVVLAFQK---ASSIVYKKE-GEQVEFSFPLAFTVEKLTGSGELWWQAER 219

Query: 384 SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK 443
           +  + +      +      +   Q  K  L +    P    +       A +    +  +
Sbjct: 220 ASSSKSWITFDLKNKEVSVKRVTQDPK--LQMGKKLPLHLTLPQALPQYAGSGNLTLALE 277

Query: 444 NELGDGMLSNIVVVKT 459
            + G       +VV  
Sbjct: 278 AKTGKLHQEVNLVVMR 293

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 14/123 (11%), Positives = 25/123 (20%), Gaps = 23/123 (18%)

Query: 19  TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQC 78
           TL         SG     +    G+    +  L V              L   L   V  
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGKLHQ-EVNLVV---------MRATQLQKNLTCEVWG 307

Query: 79  HIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ 138
                      +   + +  +           +       V     G + C   ++    
Sbjct: 308 PTSPKLML---SLKLENKEAK----------VSKREKAVWVLNPEAGMWQCLLSDSGQVL 354

Query: 139 GSS 141
             S
Sbjct: 355 LES 357

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 84.5 bits (208), Expect = 5e-19
 Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 42/224 (18%)

Query: 246 PHAPYNITGVA--TEFSVTLEWLPGYSGGPDLKQNYVIWY---REQGNKDWLPIPVTPPG 300
           P +P N++ +   T  S+  +W PG         ++++     R         IP     
Sbjct: 5   PASPSNLSCLMHLTTNSLVCQWEPGPETHLP--TSFILKSFRSRADCQYQGDTIPDCVAK 62

Query: 301 ----STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNN 356
               +  I    L         V  +N LG      + +      K  PP   ++    +
Sbjct: 63  KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPD 122

Query: 357 G-------FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGN 409
                     +SW+P      + Q   ++Y+                         +   
Sbjct: 123 VVSHQPGCLWLSWKPWKPSEYMEQECELRYQP------------------------QLKG 158

Query: 410 KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
            +W  +   P    Q  +  L  A  Y  Q+        G  S 
Sbjct: 159 ANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSP 202

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 46.7 bits (110), Expect = 4e-06
 Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 7/100 (7%)

Query: 240 VVEGTQPHAPYNITGVATE-------FSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWL 292
            ++  +   P                  + L W P        ++  + +  +    +W 
Sbjct: 103 PMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWT 162

Query: 293 PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 332
            +   P    Q  +  L  A  Y  Q+        G  S 
Sbjct: 163 LVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSP 202

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 89.2 bits (220), Expect = 6e-19
 Identities = 30/222 (13%), Positives = 54/222 (24%), Gaps = 31/222 (13%)

Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
           +Q       +     F   L  +         +++         N++  P          
Sbjct: 690 SQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVN-KES 748

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLS---NIVVVKTK--GPKPGPPRNVSVTEVNNGF 358
           + I+ L   T Y  ++   N+            V  +T            V+     N  
Sbjct: 749 LVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNV 808

Query: 359 V-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV 417
           V + WQ P E   LI  Y + YR  G                                  
Sbjct: 809 VHLMWQEPKEPNGLIVLYEVSYRRYG-----------------------DEELHLCDTRK 845

Query: 418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                    +  L+P   Y  ++   +  G+G  +       
Sbjct: 846 HFALERGCRLRGLSP-GNYSVRIRATSLAGNGSWTEPTYFYV 886

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 78.4 bits (192), Expect = 2e-15
 Identities = 33/284 (11%), Positives = 78/284 (27%), Gaps = 41/284 (14%)

Query: 198 PKNRVKIVGGNITIEGLRRVDFGYYECVV-------SNEVATIVQAAQLVVEGTQPHAPY 250
            K+ + I  G +      ++       +          E   I           +     
Sbjct: 415 SKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLK 474

Query: 251 NITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ--------------GNKDWLPIPV 296
                 +   + L W P +         ++++Y+E               G+  W  + +
Sbjct: 475 FSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDI 534

Query: 297 TPPG---------STQITINRLTPATTYEFQV-----VGKNELGDGMLSNIVVVKTKGPK 342
            PP               +  L P T Y   V             G  S+I+ V+T    
Sbjct: 535 DPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATN 594

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYR-----TDGSWKTLNKGQIRPE 396
           P  P +      + +  ++ W+PP +    I +YL+ +      ++          ++  
Sbjct: 595 PSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLP 654

Query: 397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
             ++   +  + ++               +  +       E + 
Sbjct: 655 SRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEE 698

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 53.8 bits (128), Expect = 9e-08
 Identities = 32/179 (17%), Positives = 54/179 (30%), Gaps = 21/179 (11%)

Query: 186 TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVS--NEVATIVQ--AAQLVV 241
                  +          +   ++ I GLR   F  Y   +   N+     +   A  V 
Sbjct: 726 GDVGNAGNNEEHRPFEKVVNKESLVISGLRH--FTGYRIELQACNQDTPEERCSVAAYVS 783

Query: 242 EGTQPHA-----PYNITGVATEF-SVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPI 294
             T P A        +T    E   V L W  P    G  +   Y + YR  G+ + L +
Sbjct: 784 ARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIV--LYEVSYRRYGD-EELHL 840

Query: 295 PVT---PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVS 350
             T           +  L+P   Y  ++   +  G+G  +              P N++
Sbjct: 841 CDTRKHFALERGCRLRGLSP-GNYSVRIRATSLAGNGSWTEPTYFYV-TDYLDVPSNIA 897

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 29/213 (13%), Positives = 54/213 (25%), Gaps = 18/213 (8%)

Query: 263 LEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT-----PPGSTQITINRLTPATTYEF 317
              L    G      NY  +  +  N   L            G      N     +    
Sbjct: 382 FRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHK 441

Query: 318 QVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN---NGFVISWQPPLE-RASLIQ 373
                   G    ++I +             +  + +    +  ++ W+P        + 
Sbjct: 442 MEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLL 501

Query: 374 YYLIKYRTDGSW-KTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTP 432
            +++ Y+       T   GQ     NS+     +   +   P            +  L P
Sbjct: 502 GFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQN---HPGWLMRGLKP 558

Query: 433 ATTYEFQV-----VGKNELGDGMLSNIVVVKTK 460
            T Y   V             G  S+I+ V+T 
Sbjct: 559 WTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD 591

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 83.9 bits (207), Expect = 6e-19
 Identities = 22/128 (17%), Positives = 34/128 (26%), Gaps = 14/128 (10%)

Query: 111 NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESV 170
              L+ T  N +H G Y C           + Q  + V KP   ++  E          +
Sbjct: 66  TFFLVVTAANISHDGNYLCRMKLGETE--VTKQEHLSVVKPLTLSVHSERSQ-FPDFSVL 122

Query: 171 DMHCEAQEAEGTQKPTITWQRRDGV----ALPKNRVKIVGGN----ITIEGLRRVDFGYY 222
            + C          P + W   +GV          V               L +      
Sbjct: 123 TVTC---TVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPV 179

Query: 223 ECVVSNEV 230
            CV  N+ 
Sbjct: 180 TCVGKNDK 187

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 74.7 bits (183), Expect = 9e-16
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 7/125 (5%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
              LV+        G Y+C +  G  E    Q +L+V  P  ++        P      V
Sbjct: 66  TFFLVVTAANISHDGNYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTV 124

Query: 77  QCHIKANPTFQYVTWTKDKRLL--EPYQTKDIVVMQNGSL---LFTRVNQNHQGRYTCTP 131
            C + A P    V W   + +          ++  ++GSL   +   + +      TC  
Sbjct: 125 TCTVNAFPHPH-VQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVG 183

Query: 132 YNAHG 136
            N   
Sbjct: 184 KNDKE 188

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 46.6 bits (110), Expect = 4e-06
 Identities = 26/197 (13%), Positives = 47/197 (23%), Gaps = 49/197 (24%)

Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG------------------- 206
           +GE V +    +      +  ++W +      P     ++G                   
Sbjct: 5   LGERVTLTSYWRRVSLGPEIEVSWFKLG----PGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 207 ------GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG--TQPHAPYNITGVATE 258
                   + +        G Y C +      + +   L V    T              
Sbjct: 61  HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFS 120

Query: 259 FSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP--------VTPPGSTQI-TINRL 309
             +T+      +  P     +V W   +G     P P            GS  +     L
Sbjct: 121 -VLTVTCT--VNAFP---HPHVQWLMPEGV---EPAPTAANGGVMKEKDGSLSVAVDLSL 171

Query: 310 TPATTYEFQVVGKNELG 326
                     VGKN+  
Sbjct: 172 PKPWHLPVTCVGKNDKE 188

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 80.5 bits (199), Expect = 1e-18
 Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 27/135 (20%)

Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGS 384
           G    S     +     P  P  +  + +    + +SWQ P      +Q Y +       
Sbjct: 1   GSSGSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEP-RCERPLQGYSV------- 52

Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 444
                             EY+     +   + +  P  T + +  L P  +Y F+V  ++
Sbjct: 53  ------------------EYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQS 94

Query: 445 ELGDGMLSNIVVVKT 459
           + G G     V+   
Sbjct: 95  QEGWGREREGVITIE 109

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 69.7 bits (171), Expect = 7e-15
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P  P  +   A    S+ + W       P   Q Y + Y+     +   + +  P  T +
Sbjct: 18  PDTPTRLVFSALGPTSLRVSWQEPRCERPL--QGYSVEYQLLNGGELHRLNIPNPAQTSV 75

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
            +  L P  +Y F+V  +++ G G     V+   +    GP 
Sbjct: 76  VVEDLLPNHSYVFRVRAQSQEGWGREREGVIT-IESQVSGPS 116

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 83.0 bits (205), Expect = 1e-18
 Identities = 26/207 (12%), Positives = 60/207 (28%), Gaps = 40/207 (19%)

Query: 69  PFRLQGVVQ-----CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVN 120
             ++Q   +       +        V W+ +   +    +  +     G    L      
Sbjct: 10  DLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY--SDRVKTGVTGEQIWLQINEPT 67

Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLV-------------------RKPPAFTIKPEAM 161
            N +G+Y    ++       +  +                        +       P+ +
Sbjct: 68  PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV 127

Query: 162 YQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIV-----GGNITIEGLR 215
              + G+++++ C      G   P ++W + +  AL   +   +          TI G+ 
Sbjct: 128 T-IQEGKALNLTCNVW---GDPPPEVSWLK-NEKALAQTDHCNLKFEAGRTAYFTINGVS 182

Query: 216 RVDFGYYECVVSNEVATIVQAAQLVVE 242
             D G Y  VV N+  +      + V 
Sbjct: 183 TADSGKYGLVVKNKYGSETSDFTVSVF 209

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 74.1 bits (182), Expect = 2e-15
 Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 28/164 (17%)

Query: 11  RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQY 67
           RV     G    L IN    +D G Y+ E+ +G    Q     L+ +   +         
Sbjct: 49  RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT-VDLSGQAYDEAYAEFQRLK 107

Query: 68  LPFRLQGVV---------------------QCHIKANPTFQYVTWTKDKRLLEPYQTKDI 106
                +                         C++  +P  + V+W K+++ L      ++
Sbjct: 108 QAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE-VSWLKNEKALAQTDHCNL 166

Query: 107 VVMQNG--SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
                         V+    G+Y     N +G++ S   + V +
Sbjct: 167 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 8/86 (9%)

Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIVGGN----ITIEGLRRVDFG 220
             E + ++         +   + W   +G A+   +RVK         + I      D G
Sbjct: 16  TAEGIQLYSFV--TYYVEDLKVNWSH-NGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKG 72

Query: 221 YYECVVSNEVATIVQAAQLVVEGTQP 246
            Y   + +      +   L  +    
Sbjct: 73  KYVMELFDGKTGHQKTVDLSGQAYDE 98

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
           +    +     IN V + DSG Y   V N  G  + +   ++V  P
Sbjct: 167 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTVSVFIP 211

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 80.0 bits (197), Expect = 1e-18
 Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 27/122 (22%)

Query: 340 GPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTD-GSWKTLNKGQIRPEEN 398
                PPR +       G ++ W PP      +  Y+++ R     W+ L+         
Sbjct: 5   SSGLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPA------- 57

Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 458
                                   T++ +  L     YEF++V          SN   V 
Sbjct: 58  -------------------VAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVS 98

Query: 459 TK 460
           T 
Sbjct: 99  TS 100

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 71.5 bits (175), Expect = 2e-15
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI-PVTPPGSTQI 304
              P  +  V T   V L W P       L   YV+  R+ G++ W  + P      T++
Sbjct: 8   LSPPRGLVAVRTPRGVLLHWDPPELVPKRL-DGYVLEGRQ-GSQGWEVLDPAVAGTETEL 65

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
            +  L     YEF++V          SN   V T G   
Sbjct: 66  LVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 82.7 bits (204), Expect = 2e-18
 Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 31/193 (16%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTP 131
                 K +   + V +  +++ +       + + +N     +   ++    +G YT   
Sbjct: 22  FWMQAEKLSGNAK-VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL 80

Query: 132 YNAHGTQGSSGQM-----------------EVLVRKPPAFTIKPEAMYQRKVGESVDMHC 174
            +   T  S+  +                 E + ++ P F              +V + C
Sbjct: 81  QDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV--TGECNVLLKC 138

Query: 175 EAQEAEGTQKPT-ITWQRRDGVAL-PKNRVKIVGGNIT--IEGLRRVDFGYYECVVSNEV 230
           +       +K T I W  +D   +    +     G  T  I    + D G YE ++ ++ 
Sbjct: 139 KV---ANIKKETHIVW-YKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR 194

Query: 231 ATIVQAAQLVVEG 243
                  +LV E 
Sbjct: 195 GKDKSRLKLVDEA 207

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 65.3 bits (159), Expect = 2e-12
 Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 18/142 (12%)

Query: 19  TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG---- 74
            + +  +  +D G Y  ++ +G     +    +   F          +    R QG    
Sbjct: 62  EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 121

Query: 75  -------------VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQ 121
                        +++C +       ++ W KD+R +     K        +LL T  ++
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV-DEKHDFKDGICTLLITEFSK 180

Query: 122 NHQGRYTCTPYNAHGTQGSSGQ 143
              G Y     +  G   S  +
Sbjct: 181 KDAGIYEVILKDDRGKDKSRLK 202

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 49.2 bits (117), Expect = 6e-07
 Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 40/204 (19%)

Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL---PKNRVKIVGGN 208
             FT    A+   +    V    +A   + +    + +   +   +   PK ++ I    
Sbjct: 3   DPFTKSELAVEILE-KGQVRFWMQA--EKLSGNAKVNYI-FNEKEIFEGPKYKMHIDRNT 58

Query: 209 ----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG-------TQPHAPYNITGVAT 257
               + +E L+  D G Y   + +  AT      LV +         +      I     
Sbjct: 59  GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP 118

Query: 258 EFSVTLEW--LPGYS--------GGPDLKQNYVIWYREQGNKDWLPIPVTPP-----GST 302
            F   L W      +             K+ +++WY     KD   I V        G  
Sbjct: 119 HFVEYLSWEVTGECNVLLKCKVANIK--KETHIVWY-----KDEREISVDEKHDFKDGIC 171

Query: 303 QITINRLTPATTYEFQVVGKNELG 326
            + I   +      ++V+ K++ G
Sbjct: 172 TLLITEFSKKDAGIYEVILKDDRG 195

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 84.4 bits (207), Expect = 3e-18
 Identities = 47/333 (14%), Positives = 89/333 (26%), Gaps = 67/333 (20%)

Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNI 209
           K   + ++ +  Y    GE V + C+  E        ITW   D      + V   G  +
Sbjct: 5   KKDVYVVELD-WYPDAPGEMVVLTCDTPEE-----DGITW-TLDQ----SSEVLGSGKTL 53

Query: 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE-----------GTQPHAPYNITGVATE 258
           TI+     D G Y C    EV +         E             +P     +   A  
Sbjct: 54  TIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKN 113

Query: 259 FSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQ 318
           +S         +   DL  +          +       T     ++  +      + E Q
Sbjct: 114 YSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAE-RVRGDNKEYEYSVECQ 172

Query: 319 VVGKNELGDGMLSNIVVVKTKGP----------------KPGPPRNVSVTEVNNGF--VI 360
                   +  L   V+V                     KP PP+N+ +  + N     +
Sbjct: 173 EDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEV 232

Query: 361 SWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP 420
           SW+ P   ++   Y+ + +             ++          + +  ++         
Sbjct: 233 SWEYPDTWSTPHSYFSLTF------------CVQ---------VQGKSKREK-----KDR 266

Query: 421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
             T  T   +         V  ++       S 
Sbjct: 267 VFTDKTSATVICRKNASISVRAQDRYYSSSWSE 299

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 46.6 bits (109), Expect = 9e-06
 Identities = 40/297 (13%), Positives = 76/297 (25%), Gaps = 61/297 (20%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
           V+ C          +TWT D+           V+    +L          G+YTC     
Sbjct: 25  VLTCDTPEEDG---ITWTLDQS--------SEVLGSGKTLTIQVKEFGDAGQYTCH---- 69

Query: 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG 194
            G +  S  + +L +K            Q++      + CEA+   G    T  W     
Sbjct: 70  KGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRF--TCWWLTTIS 127

Query: 195 VALPKNRVKIVG--------------GNITIEGLRRVDFGYYECVVSNE---------VA 231
             L  +     G                  + G  +      EC   +          + 
Sbjct: 128 TDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIE 187

Query: 232 TIVQAAQL-----------VVEGTQPHAPYNITGVATEFS--VTLEWLPGYSGGPD---L 275
            +V A              + +  +P  P N+     + S  V + W    +        
Sbjct: 188 VMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYF 247

Query: 276 KQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 332
              + +  + +  ++           T  T   +         V  ++       S 
Sbjct: 248 SLTFCVQVQGKSKREK-----KDRVFTDKTSATVICRKNASISVRAQDRYYSSSWSE 299

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 81.7 bits (201), Expect = 4e-18
 Identities = 33/206 (16%), Positives = 55/206 (26%), Gaps = 37/206 (17%)

Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYRE----------QGNKDWLPIPVTPPGSTQITINRL 309
            +T  W              + ++R               +     +   G  +     +
Sbjct: 17  KMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPI 76

Query: 310 TPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG--FVISWQPPLE 367
              + Y   +   + LG        V+     KP PP +V      N     ISW+ P+ 
Sbjct: 77  FLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVF 136

Query: 368 RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITI 427
             + +Q+  I+Y   G                            W    V    S  +++
Sbjct: 137 PENNLQFQ-IRYGLSGK------------------------EVQWKMYEVYDAKSKSVSL 171

Query: 428 NRLTPATTYEFQVVGKNELGDGMLSN 453
                   Y  QV  K   G G  SN
Sbjct: 172 PVPDLCAVYAVQVRCKRLDGLGYWSN 197

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 80.6 bits (199), Expect = 5e-18
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 18/135 (13%)

Query: 18  GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL---PFRLQG 74
                    ++DSG Y C+             +L V F   V  TP +++       L+ 
Sbjct: 51  QPSYRFKANNNDSGEYTCQTGQTSLS---DPVHLTVLFEWLVLQTPHLEFQEGETIMLR- 106

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
              CH   +     VT+ ++ +  +           + +    + N +H G Y CT    
Sbjct: 107 ---CHSWKDKPLVKVTFFQNGKSQKFSHL-------DPTFSIPQANHSHSGDYHCTGNIG 156

Query: 135 HGTQGSSGQMEVLVR 149
           +    SS  + + V+
Sbjct: 157 YTLF-SSKPVTITVQ 170

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 23/152 (15%), Positives = 45/152 (29%), Gaps = 21/152 (13%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
            C    +P    + W  +  L+                   + N N  G YTC       
Sbjct: 25  TCQGARSPESDSIQWFHNGNLIPT---------HTQPSYRFKANNNDSGEYTCQTGQTSL 75

Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
               S  + + V         P   +Q   GE++ + C +   +      +T+  ++G +
Sbjct: 76  ----SDPVHLTVLFEWLVLQTPHLEFQ--EGETIMLRCHSW--KDKPLVKVTF-FQNGKS 126

Query: 197 LPKNRVKIVGGNITIEGLRRVDFGYYECVVSN 228
              +    +    +I        G Y C  + 
Sbjct: 127 QKFSH---LDPTFSIPQANHSHSGDYHCTGNI 155

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 9/38 (23%), Positives = 12/38 (31%)

Query: 16  KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
            D T  I       SG Y C  + G     +    + V
Sbjct: 132 LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 81.3 bits (200), Expect = 6e-18
 Identities = 44/211 (20%), Positives = 64/211 (30%), Gaps = 34/211 (16%)

Query: 246 PHAPYNITGVATEF-SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP---VTPPGS 301
           P  P      +    + T  W PG  GG  L  NY + Y  +G       P      P S
Sbjct: 4   PGKPEIFKCRSPNKETFTCWWRPGTDGG--LPTNYSLTYHREGETLMHECPDYITGGPNS 61

Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG---- 357
                   +   TY   V   N++G      + V  T   +P PP  ++V          
Sbjct: 62  CHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKP 121

Query: 358 -FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP 416
              I W PP        ++ + Y            +IR          + +   +W    
Sbjct: 122 YLWIKWSPPTLIDLKTGWFTLLY------------EIR---------LKPEKAAEW--EI 158

Query: 417 VTPPGSTQITINRLTPATTYEFQVVGKNELG 447
                 T+  I  L P   Y  QV  K + G
Sbjct: 159 HFAGQQTEFKILSLHPGQKYLVQVRCKPDHG 189

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 80.7 bits (199), Expect = 8e-18
 Identities = 21/141 (14%), Positives = 42/141 (29%), Gaps = 18/141 (12%)

Query: 16  KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG- 74
           +  +  I+    DDSG Y C+         +    L V     +   P   +        
Sbjct: 52  QASSYFIDAATVDDSGEYRCQTQLS---TLSDPVQLEVHIGWLLLQAPRWVFKE----ED 104

Query: 75  --VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY 132
              ++CH   N     VT+ ++ +  + +         N      +      G Y C   
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKGRKYFH-------HNSDFYIPKATLKDSGSYFCRGL 157

Query: 133 NAHGTQGSSGQMEVLVRKPPA 153
                  S   +++ + +  A
Sbjct: 158 VGSKNVSSE-TVQITITQGLA 177

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 64.1 bits (156), Expect = 4e-12
 Identities = 22/153 (14%), Positives = 45/153 (29%), Gaps = 21/153 (13%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
           +C    +P  Q   W  ++ L+           Q  S        +  G Y C       
Sbjct: 28  KCQGAYSPEDQSTQWFHNESLISS---------QASSYFIDAATVDDSGEYRC---QTQL 75

Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
           +  S   +++ V         P  +++    + + + C +   + T    +T+  ++G  
Sbjct: 76  STLSD-PVQLEVHIGWLLLQAPRWVFK--EEDPIHLRCHSW--KNTALHKVTY-LQNGKG 129

Query: 197 LPKNRVKIVGGNITIEGLRRVDFGYYECVVSNE 229
                      +  I      D G Y C     
Sbjct: 130 RKYFH---HNSDFYIPKATLKDSGSYFCRGLVG 159

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 80.9 bits (199), Expect = 2e-17
 Identities = 29/219 (13%), Positives = 56/219 (25%), Gaps = 28/219 (12%)

Query: 28  DDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQ 87
           + +    C V  G  + Q     + +          T   +    +  V+C  +A+P   
Sbjct: 71  EGTQRLTCAVILG-NQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKC--EAHPR-- 125

Query: 88  YVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL 147
               T +    +P       +     LL     +++   ++C+       Q         
Sbjct: 126 -AKVTLNGVPAQP-------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 177

Query: 148 --VRKPPAFTIKPEAMYQR-KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI 204
             V   P    +                 C+A    G   P +   +     LP      
Sbjct: 178 LRVLYGPRLDERDCPGNWTWPENSQQTPMCQA---WGNPLPELKCLKDGTFPLPIGESVT 234

Query: 205 VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
           V          R   G Y C   +    + +   + V  
Sbjct: 235 V---------TRDLEGTYLCRARSTQGEVTREVTVNVLS 264

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 63.2 bits (153), Expect = 2e-11
 Identities = 19/138 (13%), Positives = 35/138 (25%), Gaps = 18/138 (13%)

Query: 16  KDGTLVINPVGSDDSGLYMCEVSN---GIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
               L++     D+   + C  +    G    +     L V +  ++          +  
Sbjct: 140 PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPE 199

Query: 73  QGVV--QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
                  C    NP  +     KD     P                  V ++ +G Y C 
Sbjct: 200 NSQQTPMCQAWGNPLPEL-KCLKDGTFPLP------------IGESVTVTRDLEGTYLCR 246

Query: 131 PYNAHGTQGSSGQMEVLV 148
             +  G       + VL 
Sbjct: 247 ARSTQGEVTREVTVNVLS 264

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 58.5 bits (141), Expect = 8e-10
 Identities = 23/176 (13%), Positives = 44/176 (25%), Gaps = 14/176 (7%)

Query: 89  VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
           V      + L P  T         + +          R TC     + +Q +   + +  
Sbjct: 38  VHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 97

Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN 208
              P   +    +     G  V + CEA       +  +T        L           
Sbjct: 98  FPAPNVILTKPEV---SEGTEVTVKCEAHP-----RAKVTLNGVPAQPLGPR------AQ 143

Query: 209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLE 264
           + ++     +   + C  + EVA  +       E    + P              E
Sbjct: 144 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPE 199

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 78.0 bits (192), Expect = 4e-17
 Identities = 28/139 (20%), Positives = 45/139 (32%), Gaps = 18/139 (12%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG-- 74
           + +L I     +DSG Y C+             YL V     +        +    +G  
Sbjct: 50  NSSLNIVNAKFEDSGEYKCQHQQVNES---EPVYLEVFSDWLLLQASAEVVM----EGQP 102

Query: 75  -VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133
             ++CH   N     V + KD   L+ +        +N ++  T       G Y CT   
Sbjct: 103 LFLRCHGWRNWDVYKVIYYKDGEALKYWY-------ENHNISITNATVEDSGTYYCTGKV 155

Query: 134 AHGTQGSSGQMEVLVRKPP 152
                  S  + + V K P
Sbjct: 156 WQLDY-ESEPLNITVIKAP 173

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 68.8 bits (168), Expect = 6e-14
 Identities = 25/154 (16%), Positives = 40/154 (25%), Gaps = 21/154 (13%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
            C+           W  +  L E           N SL          G Y C       
Sbjct: 25  TCNGNNFFEVSSTKWFHNGSLSE---------ETNSSLNIVNAKFEDSGEYKCQ------ 69

Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
            Q  +    V +     + +   +      G+ + + C            + +  +DG A
Sbjct: 70  HQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGW--RNWDVYKVIY-YKDGEA 126

Query: 197 LPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEV 230
           L   +      NI+I      D G Y C      
Sbjct: 127 L---KYWYENHNISITNATVEDSGTYYCTGKVWQ 157

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 7/43 (16%), Positives = 16/43 (37%)

Query: 16  KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK 58
           ++  + I     +DSG Y C       + ++    + V    +
Sbjct: 132 ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 78.6 bits (193), Expect = 5e-17
 Identities = 32/185 (17%), Positives = 63/185 (34%), Gaps = 13/185 (7%)

Query: 64  TVQYLPFRLQGV----VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV 119
            V  LP  L                  ++V  +      + Y  ++I+   NGSLLF  +
Sbjct: 20  LVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII-YSNGSLLFQMI 78

Query: 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEA 179
                G YT    + +  +  +     + +      ++      +   +SV + C +   
Sbjct: 79  TMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVK-ELDSVTLTCLS--- 134

Query: 180 EGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEV-ATIVQA 236
                  I W           R+ +      + I+ ++R D G Y+C +SN V      +
Sbjct: 135 -NDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNS 193

Query: 237 AQLVV 241
            +L +
Sbjct: 194 IKLDI 198

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 70.5 bits (172), Expect = 3e-14
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 3/145 (2%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
           R +I  +G+L+   +   D G+Y  ++++       A    +V  P        V     
Sbjct: 64  REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQ-PFLQVTNTTV 122

Query: 71  RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
           +    V     +N     + W  + + L     +  +   N  L    + +   G Y C 
Sbjct: 123 KELDSVTLTCLSNDIGANIQWLFNSQSL-QLTERMTLSQNNSILRIDPIKREDAGEYQCE 181

Query: 131 PYNAHGTQGSSGQMEVLVRKPPAFT 155
             N    +  S  +++ +   P   
Sbjct: 182 ISNPVSVR-RSNSIKLDIIFDPHHH 205

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 52.0 bits (124), Expect = 7e-08
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 2   NTKVGSLETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
           N++   L  R+ + ++   L I+P+  +D+G Y CE+SN +   ++    L++ F 
Sbjct: 146 NSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFD 201

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 75.9 bits (187), Expect = 5e-17
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 26/135 (19%)

Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGS 384
           G    S   +V+T    PGP  ++S +E+ +  + +SWQ P E+  ++  Y I +     
Sbjct: 1   GSSGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWE---- 56

Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 444
                                E    +       P  + +  +  LT  TTY  +V    
Sbjct: 57  ---------------------EYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMT 95

Query: 445 ELGDGMLSNIVVVKT 459
             G G +S   +   
Sbjct: 96  SKGQGQVSASTISSG 110

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 12/108 (11%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLK----QNYVIWYREQGNKDWLPIPVTPPG 300
           P    +++     + S+ + W       P  K      Y I + E    +       P  
Sbjct: 18  PGPVGHLSFSEILDTSLKVSWQE-----PGEKNGILTGYRISWEEYNRTNTRVTHYLPNV 72

Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
           + +  +  LT  TTY  +V      G G +S   +  + G  P  P +
Sbjct: 73  TLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI--SSGVPPSGPSS 118

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 81.5 bits (200), Expect = 7e-17
 Identities = 31/230 (13%), Positives = 55/230 (23%), Gaps = 30/230 (13%)

Query: 19  TLVINPVGSDDSGLYM--CEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
                 V ++D G     C V  G    Q     + +          T   +    +  V
Sbjct: 245 AKASVSVTAEDEGTQRLTCAVILGNQS-QETLQTVTIYSFPAPNVILTKPEVSEGTEVTV 303

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
           +C          VT                 +     LL     +++   ++C+      
Sbjct: 304 KCEAHPRAK---VTLNG---------VPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVA 351

Query: 137 TQG--SSGQMEVLVRKPPAFTIKPEAMYQR-KVGESVDMHCEAQEAEGTQKPTITWQRRD 193
            Q    +   E+ V   P    +                 C+A    G   P +   +  
Sbjct: 352 GQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW---GNPLPELKCLKDG 408

Query: 194 GVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
              LP      V          R   G Y C   +    + +   + V  
Sbjct: 409 TFPLPIGESVTV---------TRDLEGTYLCRARSTQGEVTREVTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 78.0 bits (191), Expect = 1e-15
 Identities = 35/289 (12%), Positives = 72/289 (24%), Gaps = 28/289 (9%)

Query: 10  TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
             +++  +   V       +    MC  +   G+  A         P +V   P   + P
Sbjct: 40  KELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQP 99

Query: 70  FRLQGVVQCHIKANPTFQY--VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRY 127
                 ++C ++         V   + ++ L+             +        +H   +
Sbjct: 100 VGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPA--EVTTTVLVRRDHHGANF 157

Query: 128 TCTPYNAHGTQG------SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG 181
           +C        QG      +S   ++     PA   +  +    +V     + C       
Sbjct: 158 SCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFP 217

Query: 182 TQKPTITWQRRDGVALP--KNRVKIVGGNITIEGLRRVDFGYYE--CVVSNEVATIVQAA 237
             +  +     D    P             ++  +   D G     C V     +     
Sbjct: 218 VSEAQVHLALGDQRLNPTVTYGNDSFSAKASVS-VTAEDEGTQRLTCAVILGNQSQETLQ 276

Query: 238 QLVVEG-----TQPHAPYNITGVATEFS--------VTLEWLPGYSGGP 273
            + +            P    G              VTL  +P    GP
Sbjct: 277 TVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGP 325

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 73.4 bits (179), Expect = 4e-14
 Identities = 35/251 (13%), Positives = 63/251 (25%), Gaps = 24/251 (9%)

Query: 2   NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEP--------QAAQAYLNV 53
             K    E  V    + T  +          + C     +            A       
Sbjct: 126 GEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTF 185

Query: 54  EFPAKVTFTPTVQYLPFRLQGVVQCHIK-ANPTFQY-VTWTKDKRLLEPYQTKDIVVMQN 111
             PA      + + L    QG V C +    P  +  V      + L P  T        
Sbjct: 186 VLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA 245

Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
            + +          R TC     + +Q +   + +     P   +    +     G  V 
Sbjct: 246 KASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV---SEGTEVT 302

Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA 231
           + CEA       +  +T        L           + ++     +   + C  + EVA
Sbjct: 303 VKCEA-----HPRAKVTLNGVPAQPLGPR------AQLLLKATPEDNGRSFSCSATLEVA 351

Query: 232 TIVQAAQLVVE 242
             +       E
Sbjct: 352 GQLIHKNQTRE 362

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 68.4 bits (166), Expect = 1e-12
 Identities = 18/138 (13%), Positives = 35/138 (25%), Gaps = 18/138 (13%)

Query: 16  KDGTLVINPVGSDDSGLYMCEVSNGIG---EPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
               L++     D+   + C  +  +      +     L V +  ++          +  
Sbjct: 325 PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPE 384

Query: 73  QGVV--QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
                  C    NP  +     KD     P                  V ++ +G Y C 
Sbjct: 385 NSQQTPMCQAWGNPLPEL-KCLKDGTFPLPIGES------------VTVTRDLEGTYLCR 431

Query: 131 PYNAHGTQGSSGQMEVLV 148
             +  G       + VL 
Sbjct: 432 ARSTQGEVTREVTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 65.7 bits (159), Expect = 9e-12
 Identities = 41/313 (13%), Positives = 89/313 (28%), Gaps = 28/313 (8%)

Query: 58  KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT 117
           + + +P+   LP     +V C    +     +          P   K++++  N   ++ 
Sbjct: 1   QTSVSPSKVILPRGGSVLVTCSTSCDQP-MLLGIET------PLPKKELLLPGNNRKVYE 53

Query: 118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ 177
             N     +  C      G   S+ +  + V   P           + VG+++ + C+ +
Sbjct: 54  LSNVQEDSQPMCYSNCPDGQ--STAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVE 111

Query: 178 EAEGTQKPTITWQRRDGVALPKNRVKIVGGNIT--IEGLRRVDFGYYECVVSNEV----- 230
                   T+    R    L +         +T  +   R      + C    ++     
Sbjct: 112 GGAPRANLTVVL-LRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGL 170

Query: 231 -----ATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE 285
                 +     Q  V    P    +   +  +   T+       G   + +  V     
Sbjct: 171 ELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVC--SLDGLFPVSEAQVHLAL- 227

Query: 286 QGNKDWLPIPVTPPGSTQITINRLTPAT-TYEFQVVGKNELGDGMLSNIVVVKTKGPKPG 344
            G++   P       S     +    A      ++     LG+     +  V      P 
Sbjct: 228 -GDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF-PA 285

Query: 345 PPRNVSVTEVNNG 357
           P   ++  EV+ G
Sbjct: 286 PNVILTKPEVSEG 298

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 78.0 bits (191), Expect = 1e-16
 Identities = 31/217 (14%), Positives = 51/217 (23%), Gaps = 21/217 (9%)

Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV---TPPGSTQI 304
            P NIT ++      L+W P        K  Y + Y   G K WL              +
Sbjct: 11  KPANITFLSINMKNVLQWTPPEGLQGV-KVTYTVQYFIYGQKKWLNKSECRNINRTYCDL 69

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQP 364
           +         Y  +V           +              P  V++T       +    
Sbjct: 70  SAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTA 129

Query: 365 PLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQ 424
           P +     +   +  +   S               Y        +       VT   +  
Sbjct: 130 PEKWKRNPEDLPVSMQQIYSNLK------------YNVSVLNTKSNRTWSQCVT---NHT 174

Query: 425 ITINRLTPATTYEFQVVGKNELGD--GMLSNIVVVKT 459
           + +  L P T Y   V             S     +T
Sbjct: 175 LVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCART 211

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 75.1 bits (185), Expect = 1e-16
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 237 AQLVVEGTQPHAPYNITGV---ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLP 293
           A L V    PHAP +           ++ L W   + G   L   Y++   E      + 
Sbjct: 10  AHLRVRQL-PHAPEHPVATLSTVERRAINLTWTKPFDGNSPL-IRYILEMSENNAPWTVL 67

Query: 294 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTKGPKP 343
           +    P +T +T+  L PA +Y+F++   N++G G  S     V      P
Sbjct: 68  LASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESGP 118

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 64.7 bits (158), Expect = 4e-13
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 29/123 (23%)

Query: 342 KPGPPRNVSVT--EVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN 398
            P  P +   T   V    + ++W  P +  S +  Y++                     
Sbjct: 17  LPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYIL--------------------- 55

Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VV 457
               E  E      + +    P +T +T+  L PA +Y+F++   N++G G  S     V
Sbjct: 56  ----EMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERV 111

Query: 458 KTK 460
              
Sbjct: 112 SLP 114

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 76.4 bits (188), Expect = 1e-16
 Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 19/130 (14%)

Query: 16  KDGTLVINPVGSDDSGLYMCEVSNGIG-EPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQG 74
           +  +  I+    +DSG Y C+ +     +P      L V     +   P   +     + 
Sbjct: 52  QASSYFIDAATVNDSGEYRCQTNLSTLSDP----VQLEVHIGWLLLQAPRWVFK----EE 103

Query: 75  ---VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTP 131
               ++CH   N     VT+ ++ +  + +         N      +      G Y C  
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNGKDRKYFH-------HNSDFHIPKATLKDSGSYFCRG 156

Query: 132 YNAHGTQGSS 141
                   S 
Sbjct: 157 LVGSKNVSSE 166

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 66.4 bits (162), Expect = 4e-13
 Identities = 22/153 (14%), Positives = 45/153 (29%), Gaps = 21/153 (13%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
           +C    +P      W  ++ L+           Q  S        N  G Y C     + 
Sbjct: 28  KCQGAYSPEDNSTQWFHNESLISS---------QASSYFIDAATVNDSGEYRC---QTNL 75

Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
           +  S   +++ V         P  +++    + + + C +   + T    +T+  ++G  
Sbjct: 76  STLSD-PVQLEVHIGWLLLQAPRWVFK--EEDPIHLRCHSW--KNTALHKVTY-LQNGKD 129

Query: 197 LPKNRVKIVGGNITIEGLRRVDFGYYECVVSNE 229
                      +  I      D G Y C     
Sbjct: 130 RKYFH---HNSDFHIPKATLKDSGSYFCRGLVG 159

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 74.4 bits (183), Expect = 2e-16
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 6/114 (5%)

Query: 244 TQPHAPYNITGVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDW--LPIPVTPPG 300
           + P +P          +  +++  P  +GG  +   Y   +R  G + W           
Sbjct: 6   SGPSSPSIDQVEPYSSTAQVQFDEPEATGGVPI-LKYKAEWRAVGEEVWHSKWYDAKEAS 64

Query: 301 -STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK-PGPPRNVSVT 352
               +TI  L P TTY  ++   N  G G +S     KT+  + P  P+     
Sbjct: 65  MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGSG 118

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 29/121 (23%)

Query: 343 PGPPRNVSVTEVNNGFVISWQPPLE-RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           P  P    V   ++   + +  P       I  Y                          
Sbjct: 8   PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKA------------------------ 43

Query: 402 GEYREQGNKDW--LPIPVTPPG-STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 458
            E+R  G + W               +TI  L P TTY  ++   N  G G +S     K
Sbjct: 44  -EWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 102

Query: 459 T 459
           T
Sbjct: 103 T 103

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 32/147 (21%), Positives = 47/147 (31%), Gaps = 31/147 (21%)

Query: 318 QVVGKNELGDGMLSNIVVVKTKGPKP-GPPRNVSVTEVNNGFV-ISWQPPLERAS--LIQ 373
                N  G G+ ++ + V T    P  PP+NVS+  VN+  + +SW PP        I 
Sbjct: 3   SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFIT 62

Query: 374 YYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPA 433
            Y I++R       +                               P +       L   
Sbjct: 63  GYKIRHRKTTRRGEME---------------------------TLEPNNLWYLFTGLEKG 95

Query: 434 TTYEFQVVGKNELGDGMLSNIVVVKTK 460
           + Y FQV      G G  SN    +T 
Sbjct: 96  SQYSFQVSAMTVNGTGPPSNWYTAETP 122

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 14/99 (14%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLK------QNYVIWYREQGNKDWLPIPVTPPG 300
            P N++       S+ + WLP     P           Y I +R+   +    +    P 
Sbjct: 31  PPQNVSLEVVNSRSIKVSWLP-----PPSGTQNGFITGYKIRHRKTTRRG--EMETLEPN 83

Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339
           +       L   + Y FQV      G G  SN    +T 
Sbjct: 84  NLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETP 122

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 26/137 (18%)

Query: 326 GDGMLSNIVVVKTKGPKPG-PPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDG 383
           G    S  V+ +T    P   PR+V    +++  + + W+ P E    IQ Y + Y  D 
Sbjct: 1   GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDP 60

Query: 384 SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK 443
           +    N                         +      S   TI  L P  TY  +V+  
Sbjct: 61  TQHVNNW------------------------MKHNVADSQITTIGNLVPQKTYSVKVLAF 96

Query: 444 NELGDGMLSNIVVVKTK 460
             +GDG LS+ + V T+
Sbjct: 97  TSIGDGPLSSDIQVITQ 113

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 12/105 (11%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLK----QNYVIWYREQGNKDWLPIPVTPPGS- 301
           AP ++     +  ++ ++W       P+      Q Y ++Y     +             
Sbjct: 21  APRDVQARMLSSTTILVQWKE-----PEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADS 75

Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
              TI  L P  TY  +V+    +GDG LS+ + V T+    GP 
Sbjct: 76  QITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQ-TGSGPS 119

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 73.5 bits (181), Expect = 4e-16
 Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 30/136 (22%)

Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS 384
           G    S  + V T+   PG P N      +    ++SW PP  R+  I  Y +       
Sbjct: 1   GSSGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPP--RSDTIANYEL------- 51

Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 444
                              Y++  + +   I + P   T   +  L P + Y F++  ++
Sbjct: 52  ------------------VYKDGEHGEEQRITIEP--GTSYRLQGLKPNSLYYFRLAARS 91

Query: 445 ELGDGMLSNIVVVKTK 460
             G G  +  +  +T 
Sbjct: 92  PQGLGASTAEISARTM 107

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P  P N      +E S+ L W P  S       NY + Y++  + +   I + P   T  
Sbjct: 18  PGQPLNFKAEPESETSILLSWTPPRSDTI---ANYELVYKDGEHGEEQRITIEP--GTSY 72

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
            +  L P + Y F++  ++  G G  +  +  +T   +   P
Sbjct: 73  RLQGLKPNSLYYFRLAARSPQGLGASTAEISART--MQSSGP 112

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 73.2 bits (180), Expect = 5e-16
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 246 PHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP-PGSTQ 303
           P+ P+++      + SV L W PG      +   ++I Y +  +K  L    T   G+  
Sbjct: 17  PNPPFDLELTDQLDKSVQLSWTPGDDNNSPI-TKFIIEYEDAMHKPGLWHHQTEVSGTQT 75

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTKGPKP-GPPRNVSVT 352
                L+P   Y F+V+  N +G  + S       TK  +P   P +   +
Sbjct: 76  TAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGPSS 126

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 28/126 (22%)

Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGS 384
           G    S           P PP ++ +T+  +  V +SW P  +  S I  ++I       
Sbjct: 1   GSSGSSGPTPAPVYDV-PNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFII------- 52

Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP-PGSTQITINRLTPATTYEFQVVGK 443
                             EY +  +K  L    T   G+       L+P   Y F+V+  
Sbjct: 53  ------------------EYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAV 94

Query: 444 NELGDG 449
           N +G  
Sbjct: 95  NSIGKS 100

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 74.5 bits (183), Expect = 6e-16
 Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 27/165 (16%)

Query: 76  VQCHIKANPTFQYVTWTKDKRLLEPYQTKD----------IVVMQNGSLLFTRVNQNHQG 125
           +     ++     + W K     +  Q +             + +NG+L    +  + Q 
Sbjct: 21  IPSFQMSDDIDD-IKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQD 79

Query: 126 RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP 185
            Y  + Y+  G        ++ +++  +   KP+  +      +  + C   E      P
Sbjct: 80  IYKVSIYDTKGKNVLEKIFDLKIQERVS---KPKISWT---CINTTLTC---EVMNGTDP 130

Query: 186 TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEV 230
            +    +DG  L  ++       +            ++C   N+V
Sbjct: 131 ELNL-YQDGKHLKLSQ------RVITHKWTTSLSAKFKCTAGNKV 168

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 18/145 (12%), Positives = 51/145 (35%), Gaps = 15/145 (10%)

Query: 2   NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF 61
             +    +    + K+GTL I  + +DD  +Y   + +  G+    +   +++   +V+ 
Sbjct: 50  EKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGK-NVLEKIFDLKIQERVS- 107

Query: 62  TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQ 121
            P + +        + C +      +     +D + L+           +  ++  +   
Sbjct: 108 KPKISWTCINT--TLTCEVMNGTDPEL-NLYQDGKHLKL----------SQRVITHKWTT 154

Query: 122 NHQGRYTCTPYNAHGTQGSSGQMEV 146
           +   ++ CT  N    + S   +  
Sbjct: 155 SLSAKFKCTAGNKVSKESSVEPVSC 179

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 22/174 (12%), Positives = 60/174 (34%), Gaps = 30/174 (17%)

Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDG------------VALPKNRVKIVG-GNITIE 212
           +G+ +++   +          I W++                   K+  K+   G + I+
Sbjct: 13  LGQDINLDIPS-FQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIK 71

Query: 213 GLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGG 272
            L+  D   Y+  + +     V      ++  +  +   I+      ++T E       G
Sbjct: 72  HLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEV----MNG 127

Query: 273 PDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 326
            D +   +  Y+   +   L +      S ++  ++ T + + +F+    N++ 
Sbjct: 128 TDPE---LNLYQ---DGKHLKL------SQRVITHKWTTSLSAKFKCTAGNKVS 169

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 72.3 bits (178), Expect = 7e-16
 Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 29/119 (24%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           PGP  N+     +   + I+W+PP      +Q Y +                        
Sbjct: 8   PGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRL------------------------ 43

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
               E        I V         +  L   T Y  + +  N  G G+ ++ + V T 
Sbjct: 44  -FCTEVSTGKEQNIEVD---GLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTL 98

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 71.9 bits (177), Expect = 1e-15
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 246 PHAPYNITGVA-TEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
           P    N+  V+ +  S+ + W  P Y+ GP   Q Y ++  E        I V       
Sbjct: 8   PGPVENLQAVSTSPTSILITWEPPAYANGP--VQGYRLFCTEVSTGKEQNIEVD---GLS 62

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
             +  L   T Y  + +  N  G G+ ++ + V T     GP 
Sbjct: 63  YKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTL-SDSGPS 104

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 27/135 (20%)

Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEV-NNGFVISWQPPLERASLIQYYLIKYRTDGS 384
           G    S   +  T   +P  P    +     N   + W+ P +  S IQ +++       
Sbjct: 1   GSSGSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVL------- 53

Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 444
                             E+ E G  +            Q  I +L+PA   +F++  +N
Sbjct: 54  ------------------EWDE-GKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARN 94

Query: 445 ELGDGMLSNIVVVKT 459
           + G    S  V+  T
Sbjct: 95  DYGTSGFSEEVLYYT 109

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 68.2 bits (167), Expect = 3e-14
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 3/110 (2%)

Query: 235 QAAQLVVEGTQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLP 293
            A        +P  P        T+ S+TL+W      G  + QN+V+ + E G  +   
Sbjct: 7   GAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKI-QNFVLEWDE-GKGNGEF 64

Query: 294 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
                    Q  I +L+PA   +F++  +N+ G    S  V+  T G   
Sbjct: 65  CQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSG 114

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 72.2 bits (177), Expect = 1e-15
 Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 1/101 (0%)

Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQIT 305
           P  P      ++  S  L       GG  +   Y++ YR +  +D             I 
Sbjct: 9   PSPPSIHGQPSSGKSFKLSITKQDDGGAPI-LEYIVKYRSKDKEDQWLEKKVQGNKDHII 67

Query: 306 INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
           +  L     YE Q+   N LG    +         P     
Sbjct: 68  LEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKD 108

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 27/120 (22%)

Query: 337 KTKGP--KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIR 394
           + +    +P PP           F +S     +  + I  Y++                 
Sbjct: 1   EAEASMREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIV----------------- 43

Query: 395 PEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 454
                   +YR +  +D             I +  L     YE Q+   N LG    +  
Sbjct: 44  --------KYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVY 95

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 73.9 bits (181), Expect = 1e-15
 Identities = 27/180 (15%), Positives = 50/180 (27%), Gaps = 28/180 (15%)

Query: 75  VVQCHIKANPT-FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133
           ++ C +  + T      W K   +L+                F   + +  G Y+C    
Sbjct: 17  LLTCSLNDSATEVTGHRWLKGGVVLKEDAL------PGQKTEFKVDSDDQWGEYSCVFLP 70

Query: 134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKPTITWQRR 192
                   G   + +  PP       + +    GE+  + C++   E         W + 
Sbjct: 71  EPM-----GTANIQLHGPPRVKAVKSSEHIN-EGETAMLVCKS---ESVPPVTDWAWYKI 121

Query: 193 DGVALPKN------RVKIVG----GNITIEGLRR-VDFGYYECVVSNEVATIVQAAQLVV 241
                         R  +        + IE L    D G Y C  ++   +      L V
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 72.0 bits (176), Expect = 5e-15
 Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 12/138 (8%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
                      D  G Y C             A + +  P +V    + +++      ++
Sbjct: 48  GQKTEFKVDSDDQWGEYSCVFLP----EPMGTANIQLHGPPRVKAVKSSEHINEGETAML 103

Query: 77  QCHIKANPTFQYVTWTKDK----RLLEPYQTKDIVVMQNG---SLLFTRVN-QNHQGRYT 128
            C  ++ P      W K      + L         V  +     L    +N +   G+Y 
Sbjct: 104 VCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYR 163

Query: 129 CTPYNAHGTQGSSGQMEV 146
           C   ++ G+  +   + V
Sbjct: 164 CNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 5/51 (9%)

Query: 7   SLETRVVIKKDG---TLVINPVG-SDDSGLYMCEVSNGIGEPQAAQAYLNV 53
             E+R  +        L I  +    D G Y C  ++  G  Q A   L V
Sbjct: 132 GSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQ-AIITLRV 181

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 143 QMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-R 201
           Q+ VL R  P  T   E      +GES+++ C A    G   P I W + D   L ++  
Sbjct: 2   QLTVLERVAPTITGNLENQT-TSIGESIEVSCTA---SGNPPPQIMWFK-DNETLVEDSG 56

Query: 202 VKIVGGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245
           + +  GN    I  +R+ D G Y C   + +      A  ++EG Q
Sbjct: 57  IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYNAH 135
            C    NP  Q + W KD   L       IV+   N +L   RV +  +G YTC   +  
Sbjct: 31  SCTASGNPPPQ-IMWFKDNETLVE--DSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVL 87

Query: 136 GTQGSSGQMEVLVRKPPAFT 155
           G   +  +   ++      T
Sbjct: 88  GC--AKVEAFFIIEGAQEKT 105

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 11  RVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT 60
            +V+K     L I  V  +D GLY C+  + +G  +  +A+  +E   + T
Sbjct: 56  GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAK-VEAFFIIEGAQEKT 105

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 243 GTQ---PHAPYNITGVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPV-- 296
           G+    P +P          +  +++  P  +GG  +   Y   +R  G + W       
Sbjct: 1   GSHMDTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPI-LKYKAEWRAVGEEVWHSKWYDA 59

Query: 297 -TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339
                   +TI  L P TTY  ++   N  G G +S     KT+
Sbjct: 60  KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 23/119 (19%), Positives = 35/119 (29%), Gaps = 23/119 (19%)

Query: 343 PGPPRNVSVTEVNNGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           P  P    V   ++   + +  P       I  Y  ++R  G                  
Sbjct: 7   PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE----------------- 49

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
               E  +  W            +TI  L P TTY  ++   N  G G +S     KT+
Sbjct: 50  ----EVWHSKWYDAKEASM-EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 76.8 bits (188), Expect = 2e-15
 Identities = 32/206 (15%), Positives = 53/206 (25%), Gaps = 37/206 (17%)

Query: 242 EGTQPHAPYNITGVATEF-SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP--VTP 298
           +G       ++  V   +  +   W PG     D   NY ++Y  +G    L     +  
Sbjct: 133 QGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLLD--TNYNLFYWYEGLDHALQCVDYIKA 190

Query: 299 PGST---QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN 355
            G     +      +    +   V G +E      S          KP PP  ++ T  +
Sbjct: 191 DGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVYLTFTRES 250

Query: 356 NG-FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP 414
           +    + W  PL     I      Y            +I           RE        
Sbjct: 251 SCEIKLKWSIPL---GPIPARCFDY------------EIE---------IREDDTTLV-- 284

Query: 415 IPVTPPGSTQITINRLTPATTYEFQV 440
                  +   T+          F V
Sbjct: 285 --TATVENETYTLKTTNETRQLCFVV 308

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 61.0 bits (147), Expect = 3e-10
 Identities = 31/248 (12%), Positives = 64/248 (25%), Gaps = 34/248 (13%)

Query: 224 CVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEF--SVTLEWLP--GYSGGPDLKQNY 279
           C+ +  ++T            + + P +   V   +   + L+W P        +    Y
Sbjct: 10  CLYTFLISTTFGCTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEY 69

Query: 280 VIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM------LSNI 333
            + YR  G++ W    +            L          +   +  +G           
Sbjct: 70  ELKYRNIGSETW--KTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETT 127

Query: 334 VVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQ 392
             +  +G      +++     N    + SW+P +       Y L  Y  +G    L    
Sbjct: 128 YWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLLDTNYNL-FYWYEGLDHAL---- 182

Query: 393 IRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS 452
              +   Y+   +  G       P              +    +   V G +E      S
Sbjct: 183 ---QCVDYI---KADGQNIGCRFPYLE----------ASDYKDFYICVNGSSENKPIRSS 226

Query: 453 NIVVVKTK 460
                   
Sbjct: 227 YFTFQLQN 234

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 75.9 bits (186), Expect = 3e-15
 Identities = 23/176 (13%), Positives = 46/176 (26%), Gaps = 22/176 (12%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
           +C ++     Q   W   +        K   +   G  L    +  ++   TC   N  G
Sbjct: 179 RCQVEGRGLEQ-AGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG 237

Query: 137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
               S  ++V V  P +  +               +        G   P++ W     V 
Sbjct: 238 RAEVS--VQVNVSFPASVQLHTAVEM-----HHWCIPFSVD---GQPAPSLRWLFNGSVL 287

Query: 197 LPKNRVKI-----------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
              + +               G + +     V+ G Y  + +N       +     
Sbjct: 288 NETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 74.0 bits (181), Expect = 1e-14
 Identities = 22/159 (13%), Positives = 46/159 (28%), Gaps = 16/159 (10%)

Query: 2   NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF 61
             +  ++     +   G  + N     +     C   N +G  +     +NV FP     
Sbjct: 197 LEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAE-VSVQVNVSFP----A 251

Query: 62  TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL--------EPYQTKDIVVMQNGS 113
           +  +          +   +   P    + W  +  +L        E  +      +++G 
Sbjct: 252 SVQLHTAVEMHHWCIPFSVDGQPAPS-LRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 310

Query: 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152
           L   +    + G YT    N  G   +S  +       P
Sbjct: 311 LRLNQPTHVNNGNYTLLAANPFGQ--ASASIMAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 20/149 (13%), Positives = 39/149 (26%), Gaps = 9/149 (6%)

Query: 113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDM 172
           +L + +  +                QG    M       P   ++        VG+ V +
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNA-SVDVGDDVLL 178

Query: 173 HCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNIT---IEGLRRVDFGYYECVVSNE 229
            C+    EG       W   +              ++          ++     C   N+
Sbjct: 179 RCQV---EGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEND 235

Query: 230 VATIVQAAQLVVEGTQPHAPYNITGVATE 258
           V     + Q+ V  + P +    T V   
Sbjct: 236 VGRAEVSVQVNV--SFPASVQLHTAVEMH 262

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 73.7 bits (180), Expect = 3e-15
 Identities = 30/182 (16%), Positives = 52/182 (28%), Gaps = 15/182 (8%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
           V+ C   +          +            I               ++ G   C     
Sbjct: 28  VIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIN 86

Query: 135 HGTQGSSGQMEVLVRKPPA-FTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITW---- 189
             +  S   + V+V        + P    +  VGE + ++C A   E        W    
Sbjct: 87  DESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTA-RTELNVGIDFNWEYPS 145

Query: 190 --------QRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
                     RD      + +K     +TI+G+ R D G Y C  S+ + T   +  + V
Sbjct: 146 SKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205

Query: 242 EG 243
             
Sbjct: 206 HE 207

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 64.4 bits (156), Expect = 4e-12
 Identities = 23/156 (14%), Positives = 41/156 (26%), Gaps = 15/156 (9%)

Query: 10  TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
            R+         I       +G+  CE        Q+    + V          +  +  
Sbjct: 56  NRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGI 115

Query: 70  FRLQG---VVQCHIKANPTFQY-VTWTKDKRLLE---------PYQTKDIVVMQNGSLLF 116
               G   V+ C  +          W       +           Q+   +     +L  
Sbjct: 116 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 175

Query: 117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152
             V ++ QG YTC   +   T+       V V + P
Sbjct: 176 DGVTRSDQGLYTCAASSGLMTK--KNSTFVRVHEDP 209

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 70.5 bits (173), Expect = 4e-15
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 4/103 (3%)

Query: 246 PHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
             AP ++T    T+ + TL+W P    G      Y++ Y  +G+++W+P    P      
Sbjct: 9   TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 68

Query: 305 TINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGPKPG 344
           T+  L       F+VVG N  G      L   V ++  GP  G
Sbjct: 69  TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSSG 111

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 69.3 bits (170), Expect = 9e-15
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 31/128 (24%)

Query: 336 VKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQI 393
             + GP    P++++V +V +    + W+PP    A  I  YL+                
Sbjct: 3   SGSSGP-TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLV---------------- 45

Query: 394 RPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---M 450
                    EY  +G+++W+P    P      T+  L       F+VVG N  G      
Sbjct: 46  ---------EYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPAT 96

Query: 451 LSNIVVVK 458
           L   V ++
Sbjct: 97  LLQPVTIR 104

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 70.5 bits (173), Expect = 4e-15
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 26/121 (21%)

Query: 343 PGPPRNVSVTEVNNG---FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
              P++++V          ++SWQPPLE    I  Y++ Y  D +               
Sbjct: 9   TSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKN--------------- 53

Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                      DW+   +         I  L   T Y F++  +N  G G LS+ ++ +T
Sbjct: 54  -------IPIDDWIMETI-SGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRT 105

Query: 460 K 460
            
Sbjct: 106 L 106

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 9/107 (8%)

Query: 246 PHAPYNITGVATEF---SVTLEWLPGYSGGPDLKQNYVIWYREQGNK---DWLPIPVTPP 299
             AP ++T +  E    +V + W P       +   Y+++Y    N    DW+   +   
Sbjct: 9   TSAPKDLTVITREGKPRAVIVSWQPPLEANGKI-TAYILFYTLDKNIPIDDWIMETI-SG 66

Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
                 I  L   T Y F++  +N  G G LS+ ++ +T     GP 
Sbjct: 67  DRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTL-KVSGPS 112

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 72.9 bits (178), Expect = 5e-15
 Identities = 36/223 (16%), Positives = 61/223 (27%), Gaps = 25/223 (11%)

Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV---TPPG 300
            +   P  +   +  F   L+W PG +   +    Y + Y+  G + W        T   
Sbjct: 6   HESLKPQRVQFQSRNFHNILQWQPGRALTGNS-SVYFVQYKIYGQRQWKNKEDCWGTQEL 64

Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVI 360
           S  +T         Y  +V   +       S              P  +++T+VN   ++
Sbjct: 65  SCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLV 124

Query: 361 SWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQ--GNKDWLPIPVT 418
               P                        K +    E+ Y   YR     N       V 
Sbjct: 125 ILHAPN-----------------LPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVY 167

Query: 419 PPGSTQITINRLTPATTYEFQVVGKNELGD--GMLSNIVVVKT 459
                 + I  LTP ++Y         + D     S    V+ 
Sbjct: 168 EGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEERCVEI 210

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 42.8 bits (100), Expect = 8e-05
 Identities = 9/47 (19%), Positives = 16/47 (34%)

Query: 338 TKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGS 384
               +   P+ V     N   ++ WQP          Y ++Y+  G 
Sbjct: 3   QSTHESLKPQRVQFQSRNFHNILQWQPGRALTGNSSVYFVQYKIYGQ 49

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 69.7 bits (171), Expect = 5e-15
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIVGGNI 209
             +  ++ E  +    G+ + + C  ++       +I W  RDGV L   NR +I G  +
Sbjct: 3   SGSSGVEVE-SFLVHPGDLLQLRCRLRD----DVQSINW-LRDGVQLAESNRTRITGEEV 56

Query: 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYN 251
            ++     D G Y CV S+   +      + V    P  P +
Sbjct: 57  EVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPSS 98

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 5/77 (6%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
           +C ++ +   Q + W +D   L      +   +    +          G Y C   +  G
Sbjct: 24  RCRLRDDV--QSINWLRDGVQLAE---SNRTRITGEEVEVQDSVPADSGLYACVTSSPSG 78

Query: 137 TQGSSGQMEVLVRKPPA 153
           +  +   + V    P  
Sbjct: 79  SDTTYFSVNVSDALPSG 95

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 2/44 (4%)

Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
          R  I     + +      DSGLY C  S+  G        +NV 
Sbjct: 48 RTRIT-GEEVEVQDSVPADSGLYACVTSSPSGSDTTY-FSVNVS 89

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 70.1 bits (172), Expect = 6e-15
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 8/113 (7%)

Query: 236 AAQLVVEGTQPHAPYNITGV-ATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLP 293
           +  + +    P  P  +        +V L W  P   G   +   Y I   ++ + +W  
Sbjct: 9   SIDIQIIDR-PGPPQIVKIEDVWGENVALTWTPPKDDGNAAI-TGYTIQKADKKSMEWFT 66

Query: 294 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGPKP 343
           + +     T  TI  L     Y F+V  +N  G      ++    V  +  K 
Sbjct: 67  V-IEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKI 118

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 63.9 bits (156), Expect = 8e-13
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 31/124 (25%)

Query: 342 KPGPPRNVSVTEVNNGFV-ISWQPPLE-RASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
           +PGPP+ V + +V    V ++W PP +   + I  Y I                      
Sbjct: 17  RPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTI---------------------- 54

Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVV 456
              +  ++ + +W  + +     T  TI  L     Y F+V  +N  G      ++    
Sbjct: 55  ---QKADKKSMEWFTV-IEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESA 110

Query: 457 VKTK 460
           V  +
Sbjct: 111 VIAR 114

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 69.8 bits (171), Expect = 7e-15
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 17/120 (14%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
           GSSG        PP     P       V  +  + C A    G+  PTI W++ DGV + 
Sbjct: 1   GSSGSSG-----PPVIRQGPVNQ-TVAVDGTFVLSCVA---TGSPVPTILWRK-DGVLVS 50

Query: 199 KN--RVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG----TQPHAPYN 251
               R+K +  G + I   +  D G Y C+ S        +A + V+      QP  P +
Sbjct: 51  TQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTD 110

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 4/83 (4%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
            C    +P    + W KD  L+   Q   I  ++NG L          GRYTC      G
Sbjct: 29  SCVATGSPVPT-ILWRKDGVLVST-QDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSG 86

Query: 137 TQGSSGQMEVLVRKPPAFTIKPE 159
              ++    + V++       P 
Sbjct: 87  E--ATWSAYIEVQEFGVPVQPPR 107

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 5   VGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
           V + ++R+   ++G L I      D+G Y C  S   GE     AY+ V+        P
Sbjct: 49  VSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEAT-WSAYIEVQEFGVPVQPP 106

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 71.9 bits (176), Expect = 7e-15
 Identities = 20/188 (10%), Positives = 44/188 (23%), Gaps = 39/188 (20%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ------------------NGSLLFTR 118
            C      + Q   W    ++         +                     N  L+   
Sbjct: 16  TCTASQKKSIQ-FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKN 74

Query: 119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQE 178
           +       Y C        +     +   +       +          G+S+ +  E+  
Sbjct: 75  LKIEDSDTYIC---EVEDQKEEVQLLVFGLTANSDTHLLQ--------GQSLTLTLES-- 121

Query: 179 AEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238
                 P++  +   G  +           +++  L   D G + C V      +     
Sbjct: 122 -PPGSSPSVQCRSPRGKNIQGG------KTLSVSQLELQDSGTWTCTVLQNQKKVEFKID 174

Query: 239 LVVEGTQP 246
           +VV   Q 
Sbjct: 175 IVVLAFQK 182

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 64.6 bits (157), Expect = 2e-12
 Identities = 19/131 (14%), Positives = 38/131 (29%), Gaps = 19/131 (14%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
           +  L+I  +  +DS  Y+CEV +   E Q     L       +    ++          +
Sbjct: 67  NFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSL---------TL 117

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
                   +   V     +            +    +L  +++     G +TCT      
Sbjct: 118 TLESPPGSSPS-VQCRSPRG---------KNIQGGKTLSVSQLELQDSGTWTCTVLQNQK 167

Query: 137 TQGSSGQMEVL 147
                  + VL
Sbjct: 168 KVEFKIDIVVL 178

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 24/90 (26%)

Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV------------------- 205
           K G++V++ C    A   +     W+  + + +  N+   +                   
Sbjct: 8   KKGDTVELTC---TASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64

Query: 206 --GGNITIEGLRRVDFGYYECVVSNEVATI 233
                + I+ L+  D   Y C V ++   +
Sbjct: 65  QGNFPLIIKNLKIEDSDTYICEVEDQKEEV 94

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT 60
                I+   TL ++ +   DSG + C V     + +  +  + V    K +
Sbjct: 134 PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVE-FKIDIVVLAFQKAS 184

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 69.7 bits (171), Expect = 7e-15
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 244 TQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           +    P  +T    T+ +VT+ W P    G      YV+ Y  +G +DW+         T
Sbjct: 6   SGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKT 65

Query: 303 QITINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGPKPG 344
           + TI  L        +V   N  G       S  ++VK  GP  G
Sbjct: 66  KFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSSG 110

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 30/121 (24%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
             PP  ++V  V +  V + W+PP    A+ +  Y++                       
Sbjct: 8   TSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVL----------------------- 44

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVV 457
             EY  +G +DW+         T+ TI  L        +V   N  G       S  ++V
Sbjct: 45  --EYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILV 102

Query: 458 K 458
           K
Sbjct: 103 K 103

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 70.0 bits (171), Expect = 7e-15
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 240 VVEGTQPHAPYNITGVATEFSVTLEWLP----GYSGGPDLKQNYVIWYREQGNKDWLPIP 295
           VV  ++PH P  + G  T  S+ L W         G  +    + I   +     +    
Sbjct: 13  VVPLSKPHPP--VVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSY--GV 68

Query: 296 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
           +    +T+  +  L P T Y+F++   +  G+   S +V V T     
Sbjct: 69  IYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESG 116

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 61.5 bits (149), Expect = 6e-12
 Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 27/137 (19%)

Query: 326 GDGMLSNIVVVKTKGP-KPGPPRNVSVTEVNNGFVISWQPPLER-ASLIQYYLIKYRTDG 383
           G    S +   K     KP PP    VT  ++   + W    +      Q   +++    
Sbjct: 1   GSSGSSGMEPHKVVPLSKPHPPVVGKVT--HHSIELYWDLEQKEKRQGPQEQWLRFSI-- 56

Query: 384 SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK 443
                              E  +     +    +    +T+  +  L P T Y+F++   
Sbjct: 57  -------------------EEEDPKMHSY--GVIYTGYATRHVVEGLEPRTLYKFRLKVT 95

Query: 444 NELGDGMLSNIVVVKTK 460
           +  G+   S +V V T 
Sbjct: 96  SPSGEYEYSPVVSVATT 112

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 69.7 bits (171), Expect = 7e-15
 Identities = 24/118 (20%), Positives = 36/118 (30%), Gaps = 27/118 (22%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           P     +         V + WQ P +   +I  Y IKY                      
Sbjct: 11  PSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDK----------------- 53

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                    +          +T+ T++ L P T Y FQV  +   G G  S  + V+T
Sbjct: 54  ---------EMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVET 102

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 246 PHAPYNITGVA-TEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
           P     I      + SV+L W  P    G      Y I Y E+  +           +T+
Sbjct: 11  PSQVVVIRQERAGQTSVSLLWQEPEQPNGI--ILEYEIKYYEKDKEMQS-YSTLKAVTTR 67

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
            T++ L P T Y FQV  +   G G  S  + V+T  P  GP 
Sbjct: 68  ATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKP-SGPS 109

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 69.3 bits (170), Expect = 7e-15
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 2/105 (1%)

Query: 243 GTQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
            + P  P +     A    ++L+W        D   +Y++   E+ +      P      
Sbjct: 5   SSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFK-PKYDGED 63

Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
              T+  L  +T Y+F+V+  N  G    S +V   T        
Sbjct: 64  LAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 61.6 bits (150), Expect = 4e-12
 Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 28/124 (22%)

Query: 338 TKGPKPGPPRNVSVTEVNNGFV-ISWQPPLE-RASLIQYYLIKYRTDGSWKTLNKGQIRP 395
           +    P  P +  +T+    ++ + W  P    +     Y++                  
Sbjct: 3   SGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYIL------------------ 44

Query: 396 EENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV 455
                  E  E+ +      P         T+  L  +T Y+F+V+  N  G    S +V
Sbjct: 45  -------EMEEETSGYGFK-PKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVV 96

Query: 456 VVKT 459
              T
Sbjct: 97  EFTT 100

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 69.4 bits (170), Expect = 8e-15
 Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 7/103 (6%)

Query: 246 PHAPYNITGV---ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           P AP N+        E  +   W P       + + Y++ Y   G+K W         S 
Sbjct: 8   PDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLI-REYIVEYSRSGSKMWASQRAA---SN 63

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGP 345
              I  L   T Y  +V      G G  S+   + T       
Sbjct: 64  FTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSGPS 106

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 67.1 bits (164), Expect = 5e-14
 Identities = 26/121 (21%), Positives = 37/121 (30%), Gaps = 31/121 (25%)

Query: 343 PGPPRNVSVTEVNNG---FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
           P  PRN+ ++         V  W PP+    LI+ Y++                      
Sbjct: 8   PDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIV---------------------- 45

Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
              EY   G+K W         S    I  L   T Y  +V      G G  S+   + T
Sbjct: 46  ---EYSRSGSKMWASQRAA---SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITT 99

Query: 460 K 460
            
Sbjct: 100 I 100

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 30/131 (22%)

Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTD-- 382
           G    S       +   P  P   +++  +   V ++W P       IQ + ++Y+    
Sbjct: 1   GSSGSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKK 60

Query: 383 -GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV 441
            G W                                 PP    + I  L    +Y+F+V 
Sbjct: 61  VGDWILATS--------------------------AIPPSRLSVEITGLEKGISYKFRVR 94

Query: 442 GKNELGDGMLS 452
             N LG+   S
Sbjct: 95  ALNMLGESEPS 105

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 67.0 bits (164), Expect = 8e-14
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 246 PHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ-GNKDWLPIP-VTPPGST 302
           P AP   T   A+E SV + W+P  +GG  + Q++ + Y++     DW+      PP   
Sbjct: 18  PEAPDRPTISTASETSVYVTWIPRGNGGFPI-QSFRVEYKKLKKVGDWILATSAIPPSRL 76

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTKGPKPGP 345
            + I  L    +Y+F+V   N LG+   S         G  P  
Sbjct: 77  SVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGPSS 120

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 73.3 bits (179), Expect = 1e-14
 Identities = 33/252 (13%), Positives = 70/252 (27%), Gaps = 43/252 (17%)

Query: 18  GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFT--PTVQYLPFRLQGV 75
            TL +    S+++G Y   V +             +E    +     P   Y+  +    
Sbjct: 52  ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111

Query: 76  VQCHIKA--------NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRY 127
           +   +K         N    Y +W+K           + V+     +       +  G Y
Sbjct: 112 LHATVKFSGGKTPADNYELHY-SWSKG----------EDVIDTTQDITIQEFTADKNGVY 160

Query: 128 TCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQR-KVGESVDMHCEA-----QEAEG 181
           T   +       +S      +        +     +   +G  + ++         ++ G
Sbjct: 161 TVKVWGESEDSAASAS--TKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSG 218

Query: 182 TQKPTITWQ---RRDGVALPKNRVKIVG-----------GNITIEGLRRVDFGYYECVVS 227
               TI +    +R+G   P      VG           G++  E     D   + CV  
Sbjct: 219 MPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAK 278

Query: 228 NEVATIVQAAQL 239
                  +  ++
Sbjct: 279 LYQQIEDETVEV 290

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 68.7 bits (167), Expect = 5e-13
 Identities = 36/254 (14%), Positives = 66/254 (25%), Gaps = 33/254 (12%)

Query: 84  PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ 143
           P+    TWTKD +  E             +L        + G Y  T  +         +
Sbjct: 33  PSNLTYTWTKDDQPHEN---------NTATLTVADATSENAGSYKVTVQDTDTMTSVESE 83

Query: 144 MEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVK 203
           + ++        I     +       V++H   + + G              +  K    
Sbjct: 84  VFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELH---YSWSKGEDV 140

Query: 204 IVG-GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG--TQPHAPYNITGVATEF- 259
           I    +ITI+       G Y   V  E      +A   +             +       
Sbjct: 141 IDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGN 200

Query: 260 SVTLEWLPGY------SGGPDLKQNYVIWYREQGNKDWLPIP-----------VTPPGST 302
            ++L ++         SG P+L   Y  + + +G      I            +TP G  
Sbjct: 201 EISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHL 260

Query: 303 QITINRLTPATTYE 316
                       + 
Sbjct: 261 FKESATYDDTAKFW 274

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 64.1 bits (155), Expect = 2e-11
 Identities = 40/254 (15%), Positives = 73/254 (28%), Gaps = 26/254 (10%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQ-EAEGTQKPTITWQRRDGVALPKNRVKIVGGNI 209
               +I+         G+   +      +       T TW + D      N        +
Sbjct: 2   AFTVSIQSNKR-CFLAGDGFTLTATVAGDEPLPSNLTYTWTK-DDQPHENN-----TATL 54

Query: 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNI----TGVATEFSVTLEW 265
           T+      + G Y+  V +        +++ +                 V+++  V L  
Sbjct: 55  TVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114

Query: 266 LPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL 325
              +SGG     NY + Y       W         +  ITI   T      + V    E 
Sbjct: 115 TVKFSGGKTPADNYELHYS------WSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGES 168

Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVT-EVNNGFVISWQPPLE---RASLIQYYLIKYRT 381
            D   S    +             S T  + N   +++    +    +S +    IKY  
Sbjct: 169 EDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKY-- 226

Query: 382 DGSWKTLNKGQIRP 395
             +W    +GQ+ P
Sbjct: 227 --NWYLQREGQLSP 238

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 50.2 bits (119), Expect = 5e-07
 Identities = 22/150 (14%), Positives = 43/150 (28%), Gaps = 21/150 (14%)

Query: 12  VVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL--- 68
            VI     + I    +D +G+Y  +V     +  A+ A   +           V+     
Sbjct: 139 DVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAAS-ASTKIMLATMNVDQDVVESKTVA 197

Query: 69  ---PFRLQGVVQCHIKA------NPTFQYVTWTKDKRLLEP--------YQTKDIVVMQN 111
                 L  VV   I        N T +Y  + + +  L P           +   +  +
Sbjct: 198 LGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPD 257

Query: 112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141
           G L       +   ++ C        +  +
Sbjct: 258 GHLFKESATYDDTAKFWCVAKLYQQIEDET 287

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 28/136 (20%)

Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSW 385
           G    S       +   P  P ++ V    N  ++SW PPL    +++ Y+I Y      
Sbjct: 1   GSSGSSGPENDLDESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNIVVRGYIIGYGV---- 56

Query: 386 KTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE 445
                                 G+     + V        +I RL  ++ Y   +   N 
Sbjct: 57  ----------------------GSPYAETVRVDSK-QRYYSIERLESSSHYVISLKAFNN 93

Query: 446 LGDGM-LSNIVVVKTK 460
            G+G+ L      ++ 
Sbjct: 94  AGEGVPLYESATTRSI 109

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 4/100 (4%)

Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQIT 305
           P  P ++        + + W P  +    + + Y+I Y   G+     + V        +
Sbjct: 18  PDQPSSLHVRPQTNCIIMSWTPPLNPNIVV-RGYIIGYGV-GSPYAETVRVDSK-QRYYS 74

Query: 306 INRLTPATTYEFQVVGKNELGDGM-LSNIVVVKTKGPKPG 344
           I RL  ++ Y   +   N  G+G+ L      ++    P 
Sbjct: 75  IERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSGPS 114

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 25/127 (19%)

Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGS 384
           G    S  +        PGPP N+ ++ +    V + ++P  +  + I  +L++ +    
Sbjct: 1   GSSGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVV 60

Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIP--VTPPGSTQITINRLTPATTYEFQVVG 442
            +                       ++WL I      P +  + +  L P T Y F++  
Sbjct: 61  GE----------------------GEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQ 98

Query: 443 KNELGDG 449
            N +G  
Sbjct: 99  VNIVGTS 105

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 12/125 (9%)

Query: 227 SNEVATIVQAAQLVVEGTQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYRE 285
           S    TI       +    P  P N+        SVTL++ PGY G   +   +++  + 
Sbjct: 3   SGSSGTISSGVPPEL----PGPPTNLGISNIGPRSVTLQFRPGYDGKTSI-SRWLVEAQV 57

Query: 286 Q---GNKDWLPIP--VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTK 339
                 ++WL I      P +  + +  L P T Y F++   N +G    S     ++T 
Sbjct: 58  GVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTL 117

Query: 340 GPKPG 344
              P 
Sbjct: 118 QSGPS 122

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 13/109 (11%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
           GSSG        PP     P       V  +  + C+A    G   P I+W + +G   P
Sbjct: 1   GSSGSSG-----PPIILQGPANQ-TLAVDGTALLKCKA---TGDPLPVISWLK-EGFTFP 50

Query: 199 KN--RVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244
               R  I   G + I+ LR  D G Y CV ++       +A L V  +
Sbjct: 51  GRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 52.4 bits (126), Expect = 5e-09
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
           +C    +P    ++W K+     P +     + + G+L    +  +  G YTC   ++ G
Sbjct: 29  KCKATGDPLPV-ISWLKEGFTF-PGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSG 86

Query: 137 TQGSSGQMEVL 147
               S  ++V 
Sbjct: 87  ETSWSAVLDVT 97

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 2  NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
                 + R  I++ GTL I  +   D+G Y C  ++  GE     A L+V 
Sbjct: 46 GFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETS-WSAVLDVT 97

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 34/145 (23%)

Query: 323 NELGDGMLSNIVVVKT------KGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYL 376
           +    G  ++ +  +T      +   P  P ++ V  +    V+SW PP  +  +++ Y 
Sbjct: 2   SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYA 61

Query: 377 IKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTY 436
           I Y                                              TI  L P++ Y
Sbjct: 62  IGYGIGSPHAQ---------------------------TIKVDYKQRYYTIENLDPSSHY 94

Query: 437 EFQVVGKNELGDGM-LSNIVVVKTK 460
              +   N +G+G+ L    V +  
Sbjct: 95  VITLKAFNNVGEGIPLYESAVTRPH 119

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 4/117 (3%)

Query: 229 EVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN 288
           +  +       + E   P  P ++       S+ + W P  +    + + Y I Y   G+
Sbjct: 11  DWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNIVV-RGYAIGYGI-GS 68

Query: 289 KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM-LSNIVVVKTKGPKPG 344
                I V        TI  L P++ Y   +   N +G+G+ L    V +     P 
Sbjct: 69  PHAQTIKV-DYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSGPS 124

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 15/117 (12%)

Query: 136 GTQGSSGQMEVLV-----RKPPAFTI--KPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT 188
           G+ GSSG +   V      +PP   +       Y RKVGE +++    Q   G  +P + 
Sbjct: 1   GSSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ---GKPRPQVV 57

Query: 189 WQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
           W +  G  L  +RV +          +    R D G YE  V  E        ++ V
Sbjct: 58  WTK-GGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 1/74 (1%)

Query: 76  VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH 135
           +    +  P  Q V WTK    L+  +        +      +  ++  G Y  +    +
Sbjct: 44  LVVPFQGKPRPQ-VVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIEN 102

Query: 136 GTQGSSGQMEVLVR 149
               ++ ++ V+ +
Sbjct: 103 MKDTATIRIRVVEK 116

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 71.3 bits (174), Expect = 2e-14
 Identities = 19/185 (10%), Positives = 49/185 (26%), Gaps = 34/185 (18%)

Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP---VTPPGSTQITINRLTPATTYE 316
            +   W       P        WY+   N           +   ++   + +        
Sbjct: 14  YMNCTWQSSSEPQPT-NLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQT 72

Query: 317 FQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYY 375
           F V  ++       +  ++       P  P N+++ +++   + ++W        L    
Sbjct: 73  FVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHCLE--- 129

Query: 376 LIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATT 435
                                   +L +YR   +  W     +     + ++  +     
Sbjct: 130 ------------------------HLVQYRTDWDHSW--TEQSVDYRHKFSLPSVDGQKR 163

Query: 436 YEFQV 440
           Y F+V
Sbjct: 164 YTFRV 168

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 46.3 bits (109), Expect = 5e-06
 Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 8/113 (7%)

Query: 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVV--EGTQPHAPYNIT-GVATEFSVTLEWL 266
            ++      +  +   + +      QA Q++       P AP N+T    +E  + L W 
Sbjct: 61  QLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWN 120

Query: 267 PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 319
             +    +    +++ YR   +  W     +     + ++  +     Y F+V
Sbjct: 121 NRF---LNHCLEHLVQYRTDWDHSW--TEQSVDYRHKFSLPSVDGQKRYTFRV 168

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 70.8 bits (173), Expect = 2e-14
 Identities = 22/170 (12%), Positives = 49/170 (28%), Gaps = 25/170 (14%)

Query: 77  QCHIKANPTFQYVTWTKDKRLL----------------EPYQTKDIVVMQNGSLLFTRVN 120
                A     ++TW  ++  L                 P Q K +   Q+ SL  + + 
Sbjct: 19  PLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLK 78

Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAE 180
               G Y          + SS  + + +R+     +   +   + +   + + C  +  +
Sbjct: 79  MEDTGSYRAQISTKTSAKLSSYTLRI-LRQLRNIQVTNHSQLFQNMTCELHLTCSVE--D 135

Query: 181 GTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEV 230
                +  W+        +  + +          R      Y C+  N V
Sbjct: 136 ADDNVSFRWEALGNTLSSQPNLTV------SWDPRISSEQDYTCIAENAV 179

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 17/126 (13%), Positives = 40/126 (31%), Gaps = 14/126 (11%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYL-P 69
           R+   +  +L ++ +  +D+G Y  ++S       ++     +     +  T   Q    
Sbjct: 63  RLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQN 122

Query: 70  FRLQGVVQCHIK-ANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQ-GRY 127
              +  + C ++ A+    +  W      L              +L  +   +      Y
Sbjct: 123 MTCELHLTCSVEDADDNVSF-RWEALGNTLSS----------QPNLTVSWDPRISSEQDY 171

Query: 128 TCTPYN 133
           TC   N
Sbjct: 172 TCIAEN 177

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 71.8 bits (175), Expect = 2e-14
 Identities = 19/185 (10%), Positives = 49/185 (26%), Gaps = 34/185 (18%)

Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV---TPPGSTQITINRLTPATTYE 316
            +   W       P        WY+   N           +   ++   + +        
Sbjct: 52  YMNCTWQSSSEPQPT-NLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQT 110

Query: 317 FQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYY 375
           F V  ++       +  ++       P  P N+++ +++   + ++W        L    
Sbjct: 111 FVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHCLE--- 167

Query: 376 LIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATT 435
                                   +L +YR   +  W     +     + ++  +     
Sbjct: 168 ------------------------HLVQYRTDWDHSW--TEQSVDYRHKFSLPSVDGQKR 201

Query: 436 YEFQV 440
           Y F+V
Sbjct: 202 YTFRV 206

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 50.6 bits (120), Expect = 3e-07
 Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 14/147 (9%)

Query: 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVV--EGTQPHAPYNITGV-ATEFSVTLEWL 266
            ++      +  +   + +      QA Q++       P AP N+T    +E  + L W 
Sbjct: 99  QLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWN 158

Query: 267 PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 326
             +    +    +++ YR   +  W     +     + ++  +     Y F+V  +    
Sbjct: 159 NRF---LNHCLEHLVQYRTDWDHSW--TEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPL 213

Query: 327 DGML------SNIVVVKTKGPKPGPPR 347
            G        S+ +   +   K  P  
Sbjct: 214 CGSAQHWSEWSHPIHWGSNTSKENPRT 240

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 72.2 bits (176), Expect = 2e-14
 Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 34/168 (20%)

Query: 107 VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKV 166
               +GSLL   V +  +G YTC     + +      +E+ V       ++        V
Sbjct: 79  TFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVR------V 132

Query: 167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALP----------------------KNRVKI 204
           G++  M C  Q  E  +   + W    G                          +NRV +
Sbjct: 133 GDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDL 192

Query: 205 VG------GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
            G      G+I ++ ++  D G Y C +        +   L V   + 
Sbjct: 193 TGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEF 240

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 65.7 bits (159), Expect = 3e-12
 Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 29/205 (14%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP------------ 198
            P  T+    + +  VGESV M C  Q  E      + W                     
Sbjct: 5   LPGLTVSSPQL-RVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63

Query: 199 ------KNRVKIVG------GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
                 +NR  +VG      G++ ++ +++ D G Y C +  +  ++V    + +    P
Sbjct: 64  VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW-VLP 122

Query: 247 HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
             P ++  V    +  +          + +   V W    G+       ++   + +   
Sbjct: 123 EEPRDLR-VRVGDTTQMR--CSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179

Query: 307 NRLTPATTYEFQVVGKNELGDGMLS 331
            +          + G     DG + 
Sbjct: 180 FQSLGRFRNRVDLTGDISRNDGSIK 204

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 64.9 bits (157), Expect = 6e-12
 Identities = 28/175 (16%), Positives = 55/175 (31%), Gaps = 32/175 (18%)

Query: 13  VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
               DG+L++  V   D G+Y CE+          +  + +     +   P    +    
Sbjct: 79  TFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVM-KKPVEL---WVLPEEPRDLRVRVGD 134

Query: 73  QGVVQCHIKANPTFQ--YVTWTKDKRLLEP-------------------YQTKDIVVMQ- 110
              ++C I++    +   V W                             + ++ V +  
Sbjct: 135 TTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTG 194

Query: 111 -----NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA 160
                +GS+    V ++ QG YTC+ Y        +  + V+       TI P  
Sbjct: 195 DISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ-DEFQRTISPTP 248

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 10  TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV-EFPAKVTFTPTVQ 66
           T  + + DG++ +  V   D G+Y C +  G  E +     L+V +   + T +PT  
Sbjct: 193 TGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESR-KTIVLHVVQDEFQRTISPTPP 249

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 67.6 bits (165), Expect = 4e-14
 Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 20/115 (17%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGS---WKTLNKGQIRPEEN 398
             PP   +VT +++  V + W  P      I  + ++YR  G    W+T N         
Sbjct: 3   TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTN--------- 53

Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
                  +               S   ++  L P  TY F+++      D   SN
Sbjct: 54  -------DNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESN 101

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 53.4 bits (128), Expect = 4e-09
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 14/100 (14%)

Query: 246 PHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG-NKDWLPI--------- 294
            + P        ++ SV L W+   + G  +   + + YR  G  K+W            
Sbjct: 3   TYPPTPPNVTRLSDESVMLRWMVPRNDGLPI-VIFKVQYRMVGKRKNWQTTNDNIPYGKP 61

Query: 295 --PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 332
                   S   ++  L P  TY F+++      D   SN
Sbjct: 62  KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESN 101

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 67.3 bits (165), Expect = 4e-14
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 246 PHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P  P ++     T  SVTL W  G     +    Y I YR  G +      V    +T+ 
Sbjct: 8   PKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQE-VDGVATTRY 63

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
           +I  L+P + Y F+V+  N +G G  S  V  +T G + GP 
Sbjct: 64  SIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRART-GEQSGPS 104

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 29/118 (24%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           P PP ++ VTE     V ++W      +  + YY I                        
Sbjct: 8   PKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGI------------------------ 41

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
            +YR  G +      V    +T+ +I  L+P + Y F+V+  N +G G  S  V  +T
Sbjct: 42  -QYRAAGTEGPFQE-VDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRART 97

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236

 Score = 70.6 bits (172), Expect = 4e-14
 Identities = 29/228 (12%), Positives = 66/228 (28%), Gaps = 34/228 (14%)

Query: 224 CVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFS-VTLEWLPGYSGGPD----LKQN 278
             + +     +Q+    ++      P      + E    +  W      G      ++  
Sbjct: 8   AAILSRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLF 67

Query: 279 YVIWYREQGNKDWLPIPVTP---PGSTQITINRLTPATTYEFQVVGKNELGDGM---LSN 332
           Y     ++  ++W   P        S     +  + A  Y  ++       D     +  
Sbjct: 68  YTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDE 127

Query: 333 IVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQ 392
           IV             NVS+T ++    + W+ P        + +++Y            +
Sbjct: 128 IVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEY------------E 175

Query: 393 IRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
           ++         Y+E     W  +      +T + +  L     YE +V
Sbjct: 176 LQ---------YKEVNETKWKMMDPIL--TTSVPVYSLKVDKEYEVRV 212

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236

 Score = 43.3 bits (101), Expect = 6e-05
 Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 12/111 (10%)

Query: 219 FGYYECVVSNEVATIVQAAQLVVEGTQPHAPY-------NITGVATEFSVTLEWLPGYS- 270
              Y   +++   T+ +    V E  QP  P        N++       + + W    + 
Sbjct: 104 AIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNA 163

Query: 271 --GGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 319
                 +   Y + Y+E     W  +      +T + +  L     YE +V
Sbjct: 164 DIQKGWMVLEYELQYKEVNETKWKMMDPIL--TTSVPVYSLKVDKEYEVRV 212

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 67.4 bits (165), Expect = 4e-14
 Identities = 29/113 (25%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 236 AAQLVVEGTQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI 294
                +    P  P        T+ SVTL W PG  G       Y+I    Q   +    
Sbjct: 7   GKNYDLSDL-PGPPSKPQVTDVTKNSVTLSWQPGTPGTLPA-SAYIIEAFSQSVSNSWQT 64

Query: 295 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGPKPG 344
                 +T  T+  L P T Y F V   N  G      +S+ V  +  GP  G
Sbjct: 65  VANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSSG 117

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 26/109 (23%), Positives = 32/109 (29%), Gaps = 26/109 (23%)

Query: 342 KPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
            PGPP    VT+V    V +SWQP          Y+I                       
Sbjct: 15  LPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYII----------------------- 51

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
             E   Q   +          +T  T+  L P T Y F V   N  G  
Sbjct: 52  --EAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLS 98

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 70.7 bits (172), Expect = 5e-14
 Identities = 24/162 (14%), Positives = 39/162 (24%), Gaps = 34/162 (20%)

Query: 111 NGSLLFTRVNQNHQGRYTCTPYN-----AHGTQGSSGQMEVLVRKPPA-FTIKPEAMYQR 164
             +L  T V+    GRY C           G    S  ++V    P     +    + Q 
Sbjct: 89  APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQV 148

Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDG------------------------VALPKN 200
             G  + M C            +TW                              +    
Sbjct: 149 DEGNDITMTCPC---TDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAG 205

Query: 201 RVKIVG-GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
           R    G  N+ I   +  D G   C ++     +       +
Sbjct: 206 RASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 64.5 bits (156), Expect = 7e-12
 Identities = 26/168 (15%), Positives = 39/168 (23%), Gaps = 31/168 (18%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP-AKVTFTPTVQYLP 69
            V      TL +  V   D G Y C+V+      +      +V       T +  V    
Sbjct: 83  SVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVST 142

Query: 70  FRLQGVVQ-------CHIKANPTFQYVTWTKDKRLLEPYQTKD----------------- 105
             +  V +       C          VTW       E Y+T                   
Sbjct: 143 AEVVQVDEGNDITMTCPCTDCANAN-VTWYTGPTFFENYETGTYQPLANKNQFGITWFSS 201

Query: 106 -----IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
                       +L+         GR  C      G   +     +L 
Sbjct: 202 EIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 49.5 bits (117), Expect = 6e-07
 Identities = 29/213 (13%), Positives = 52/213 (24%), Gaps = 50/213 (23%)

Query: 158 PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP------------------- 198
                +   G +V++ C  Q A  TQ P I+W +                          
Sbjct: 8   THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 67

Query: 199 -----------KNRVKIV---GGNITIEGLRRVDFGYYECVVSN-----EVATIVQAAQL 239
                        R  +       + +  +   D G Y C V+      E     ++  L
Sbjct: 68  SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVL 127

Query: 240 VVEGTQPHAPYNITG-----VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI 294
            V G  P    +++      V     +T+      +         V WY      +    
Sbjct: 128 KVTGHTPSNNVHVSTAEVVQVDEGNDITMTC--PCTDCA---NANVTWYTGPTFFENYET 182

Query: 295 PVTPPGSTQITINR--LTPATTYEFQVVGKNEL 325
               P + +        +          G   L
Sbjct: 183 GTYQPLANKNQFGITWFSSEIAGRASFSGARNL 215

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 5   VGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
              +  R        LVI      D+G   CE++ G GE  A      +
Sbjct: 200 SSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDAD-RSSTI 247

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 69.4 bits (169), Expect = 6e-14
 Identities = 34/214 (15%), Positives = 59/214 (27%), Gaps = 26/214 (12%)

Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITIN 307
            P N+   +  F   L+W         L   +   Y          +  T    T+   +
Sbjct: 4   PPENVRMNSVNFKNILQWESPAFAKGQL--TFTAQYLSYRIFQDKCMQTT---LTECDFS 58

Query: 308 RLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLE 367
            L+    +  +V  +          I          GPP  + V  + +   + +  P  
Sbjct: 59  SLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPP-GMQVEVLADCLHMRFLAPKI 117

Query: 368 RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITI 427
                 + +                      +Y  +Y +QG  +   I           +
Sbjct: 118 ENEYETWTMKNVYNS---------------WTYNVQYWKQGTDEKFQITPQ---YDFEVL 159

Query: 428 NRLTPATTYEFQVVGKNELGD--GMLSNIVVVKT 459
             L P TTY  QV G     +  G  S  V  +T
Sbjct: 160 RNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQT 193

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 66.2 bits (162), Expect = 8e-14
 Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 26/121 (21%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPL--ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
              P       V+    ++ W         + IQ + I YR   S               
Sbjct: 5   ITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDN------------- 51

Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                    + D+    V         I  L P T+Y+ ++   NE G+   SN+++ +T
Sbjct: 52  ---------DSDYKRDVVEGS-KQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101

Query: 460 K 460
           K
Sbjct: 102 K 102

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 14/101 (13%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQN-----YVIWYREQG---NKDWLPIPVTP 298
            P+     A ++  + L+W       P    N     + I+YR      + D+    V  
Sbjct: 7   GPHIAYTEAVSDTQIMLKWTYI----PSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG 62

Query: 299 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339
                  I  L P T+Y+ ++   NE G+   SN+++ +TK
Sbjct: 63  S-KQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICETK 102

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 67.0 bits (163), Expect = 1e-13
 Identities = 31/137 (22%), Positives = 44/137 (32%), Gaps = 21/137 (15%)

Query: 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
           ++H     S  +         F   P +  QR VG SV++HCEA    G+  P I W   
Sbjct: 3   SSHHHHHHSSGLVPRGSHMAGFVQAPLSQ-QRWVGGSVELHCEAV---GSPVPEIQWWFE 58

Query: 193 DGVALPKNRVKIVG-----------------GNITIEGLRRVDFGYYECVVSNEVATIVQ 235
                        G                   I+I+ L   D G YEC  SN+      
Sbjct: 59  GQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHL 118

Query: 236 AAQLVVEGTQPHAPYNI 252
                V+  +  A   +
Sbjct: 119 TRAPRVKWVRAQAVVLV 135

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 2/60 (3%)

Query: 7   SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
            +          T+ I+ +  +D+G Y C  SN             V++  +      V 
Sbjct: 79  HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNH-LTRAPRVKW-VRAQAVVLVL 136

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 9/91 (9%), Positives = 22/91 (24%), Gaps = 15/91 (16%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTK--------------DIVVMQNGSLLFTRVNQN 122
            C    +P  + + W  + +      ++                      ++    + + 
Sbjct: 42  HCEAVGSPVPE-IQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEE 100

Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA 153
             G Y C   N       +    V   +  A
Sbjct: 101 DTGTYECRASNDPDRNHLTRAPRVKWVRAQA 131

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 28/137 (20%)

Query: 326 GDGMLSNIVVVKTKGPKP-GPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDG 383
           G    S + V+ +    P   P  V V  +++  + + W+  LE   +++ Y I+Y    
Sbjct: 1   GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLE--KIVESYQIRYWAAH 58

Query: 384 SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK 443
                     + E  + +                         +  L P T Y  +V   
Sbjct: 59  D---------KEEAANRV---------------QVTSQEYSARLENLLPDTQYFIEVGAC 94

Query: 444 NELGDGMLSNIVVVKTK 460
           N  G G  S+++   TK
Sbjct: 95  NSAGCGPPSDMIEAFTK 111

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 6/101 (5%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS-TQIT 305
           AP  +     +   +++ W           ++Y I Y    +K+     V          
Sbjct: 21  APTEVGVKVLSSSEISVHWEHVLEKIV---ESYQIRYWAAHDKEEAANRVQVTSQEYSAR 77

Query: 306 INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
           +  L P T Y  +V   N  G G  S+++   TK    GP 
Sbjct: 78  LENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTK-KASGPS 117

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 66.0 bits (161), Expect = 1e-13
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 26/121 (21%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQ--PPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
              P       VN    ++ W   P     + I  + I YR   S               
Sbjct: 9   VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDN------------- 55

Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                    + D+    V        +I+ L P T+Y+ ++   NE G+   SN+++ +T
Sbjct: 56  ---------DSDYKKDMVEGD-RYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICET 105

Query: 460 K 460
           K
Sbjct: 106 K 106

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 58.7 bits (142), Expect = 5e-11
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 10/106 (9%)

Query: 248 APYNITGVA-TEFSVTLEW---LPGYSGGPDLKQNYVIWYREQG---NKDWLPIPVTPPG 300
            PY     A  E ++ L+W       +  P     + I+YR      + D+    V    
Sbjct: 11  GPYITFTDAVNETTIMLKWMYIPASNNNTPIHG--FYIYYRPTDSDNDSDYKKDMVEGD- 67

Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
               +I+ L P T+Y+ ++   NE G+   SN+++ +TK       
Sbjct: 68  RYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPSS 113

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 67.2 bits (164), Expect = 1e-13
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 15/149 (10%)

Query: 120 NQNHQGRYTCTPYNAHGTQGSSGQMEVL----VRKPPAFTIKPEAMYQRKVGESVDMHCE 175
            +   G    +P NA+  +     +E +        P FT     M     G +    C+
Sbjct: 6   GRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVV-EGSAARFDCK 64

Query: 176 AQEAEGTQKPTITWQRRDGVALPKN-RVKIV---GGNIT--IEGLRRVDFGYYECVVSNE 229
            +   G   P + W  +D   + ++   +I     GN +  I  +   D   Y C   N 
Sbjct: 65  VE---GYPDPEVMW-FKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS 120

Query: 230 VATIVQAAQLVVEGTQPHAPYNITGVATE 258
           +      A+L+VE           G   E
Sbjct: 121 LGEATCTAELLVETMGKEGEGEGEGEEDE 149

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 7/144 (4%)

Query: 22  INPVGSDDSGLYMCEVSNGIGEPQA---AQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQC 78
           ++   +  S       +N +    A     A          T T     +         C
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63

Query: 79  HIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNAHG 136
            ++  P  + V W KD   ++  +   I   + G  SL  + V  +   +YTC   N+ G
Sbjct: 64  KVEGYPDPE-VMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122

Query: 137 TQGSSGQMEVLVR-KPPAFTIKPE 159
               + ++ V    K      + E
Sbjct: 123 EATCTAELLVETMGKEGEGEGEGE 146

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 11  RVVIKKDG--TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK 58
           ++   ++G  +L I+ V  DD   Y C+  N +GE     A L VE   K
Sbjct: 89  QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEAT-CTAELLVETMGK 137

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 26/119 (21%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           P    ++ VT  +   + ++W  P   +  +  Y +KY   G+    +   ++  EN   
Sbjct: 8   PPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRA- 66

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
                                    +  L    +Y  QV  ++E G G        +T+
Sbjct: 67  ------------------------ELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQ 101

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 246 PHAPYNITGVA-TEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
           P A  +I     +  S++L W  P    G  L   Y + Y E+G +    +        +
Sbjct: 8   PPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLD--YEVKYHEKGAEGPSSVRFLKTSENR 65

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
             +  L    +Y  QV  ++E G G        +T+    GP 
Sbjct: 66  AELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQ-LDSGPS 107

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 66.9 bits (163), Expect = 3e-13
 Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 24/150 (16%)

Query: 89  VTWTKDKRLLEPYQTKDIV--------VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS 140
           V W +   L+  ++ K           ++ NG L    + ++  G Y  T Y+ +GT+  
Sbjct: 30  VRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL 89

Query: 141 SGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN 200
           +  +++ + +  +   KP   ++     +  + C   E        +    +    L   
Sbjct: 90  NKALDLRILEMVS---KPMIYWE---CSNATLTC---EVLEGTDVELKL-YQGKEHLRSL 139

Query: 201 RVKIVGGNITIEGLRRVDFGYYECVVSNEV 230
           R K      T+          ++C   N V
Sbjct: 140 RQK------TMSYQWTNLRAPFKCKAVNRV 163

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 15/131 (11%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPF 70
              I  +G L I  +  DDSG Y   V +  G  +     L++     V+  P + +   
Sbjct: 54  AFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT-RILNKALDLRILEMVS-KPMIYWEC- 110

Query: 71  RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
                + C +      +     + K  L   + K +          +    N +  + C 
Sbjct: 111 -SNATLTCEVLEGTDVEL-KLYQGKEHLRSLRQKTM----------SYQWTNLRAPFKCK 158

Query: 131 PYNAHGTQGSS 141
             N    +   
Sbjct: 159 AVNRVSQESEM 169

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 21/162 (12%), Positives = 52/162 (32%), Gaps = 26/162 (16%)

Query: 166 VGESVDMHCEAQEAEGTQKPTITW----------QRRDGVALPKNRVKIVG-GNITIEGL 214
           +G  ++++             + W          +R+    L     +I+  G++ I+ L
Sbjct: 10  LGHGINLNIPNF-QMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNL 68

Query: 215 RRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPD 274
            R D G Y   V +   T +    L +   +  +   I    +  ++T E       G D
Sbjct: 69  TRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCE----VLEGTD 124

Query: 275 LKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE 316
           ++   +  Y+ +         +       ++         ++
Sbjct: 125 VE---LKLYQGK-------EHLRSLRQKTMSYQWTNLRAPFK 156

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 5/99 (5%)

Query: 246 PHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P           +     + W    S G D+   Y + +        +            
Sbjct: 8   PDQCKPPQVTCRSATCAQVNWEVPLSNGTDV-TEYRLEWGGVEGSMQICYCGP---GLSY 63

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
            I  L+PATTY  +V   + +G G  S +V   T     
Sbjct: 64  EIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSSG 102

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 64.2 bits (157), Expect = 4e-13
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 29/119 (24%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           P   +   VT  +     ++W+ PL   + +  Y +++        +             
Sbjct: 8   PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQI------------- 54

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
                                    I  L+PATTY  +V   + +G G  S +V   T 
Sbjct: 55  ---------------CYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTP 98

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 27/135 (20%)

Query: 331 SNIVVVKTKGPKP-GPPRNVSVTEVNNGFV-ISWQPPLERAS--LIQYYLIKYRTDGSWK 386
           S    + T+   P GPP +V++  V +  + ++W+ P +     +I+ Y I YR +    
Sbjct: 3   SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSP-- 60

Query: 387 TLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS-TQITINRLTPATTYEFQVVGKNE 445
                                 N  +  + +   G     T++ L     Y   V   N 
Sbjct: 61  --------------------GSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNR 100

Query: 446 LGDGMLSNIVVVKTK 460
            G G  S+ +   T 
Sbjct: 101 AGTGPSSSEINATTL 115

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 16/108 (14%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLK------QNYVIWYRE---QGNKDWLPIPVT 297
            P ++T    T  S+ + W       P  +      + Y I YRE     N  +  + + 
Sbjct: 18  PPMDVTLQPVTSQSIQVTWKA-----PKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMK 72

Query: 298 PPGS-TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPG 344
             G     T++ L     Y   V   N  G G  S+ +   T    P 
Sbjct: 73  ATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 64.7 bits (158), Expect = 3e-13
 Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 8/99 (8%)

Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-- 205
                    KP +M     GES    C+     G   PT+TW R+  V     R ++   
Sbjct: 11  TTLAARILTKPRSMT-VYEGESARFSCDTD---GEPVPTVTWLRKGQVLSTSARHQVTTT 66

Query: 206 --GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
                  I  ++  D G Y  VV N          L ++
Sbjct: 67  KYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 15  KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
           K   T  I+ V + D G Y   V N  G+ +A    L ++
Sbjct: 67  KYKSTFEISSVQASDEGNYSVVVENSEGKQEAE-FTLTIQ 105

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYNAH 135
            C     P    VTW +  ++L       +   +   +   + V  + +G Y+    N+ 
Sbjct: 35  SCDTDGEPVPT-VTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE 93

Query: 136 GTQGSSGQMEV 146
           G Q +   + +
Sbjct: 94  GKQEAEFTLTI 104

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 64.3 bits (157), Expect = 4e-13
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
           GSSG   + V   P+F+   +       G+   + C  +   GT  P ITW   +G  + 
Sbjct: 1   GSSGSSGMEV--APSFSSVLKDCA-VIEGQDFVLQCSVR---GTPVPRITW-LLNGQPIQ 53

Query: 199 KNRVKIVGGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
             R     G     I+     D G Y C+  N +  +  +A + V
Sbjct: 54  YARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
           QC ++  P  + +TW  + + ++    +         L          G YTC   NA G
Sbjct: 32  QCSVRGTPVPR-ITWLLNGQPIQY--ARSTCEAGVAELHIQDALPEDHGTYTCLAENALG 88

Query: 137 TQGSSGQMEV 146
               S  + V
Sbjct: 89  QVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
             L I     +D G Y C   N +G+     A++ V
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVS-CSAWVTV 98

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 68.8 bits (167), Expect = 4e-13
 Identities = 35/224 (15%), Positives = 65/224 (29%), Gaps = 34/224 (15%)

Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQN-----YVIWYREQGNKDWLPIPVTPPG 300
              P  +   A + ++ +   PG         +     Y +   +  +     I      
Sbjct: 101 QIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENI--- 157

Query: 301 STQITINRLTPATTYEFQVVGKNELGD--GMLSNIVVVKT-KGPKPGPPRNVSVTEVNNG 357
            ++  I +L+P TTY  +V          G+ S +  +KT    +  PP N+ V+  N  
Sbjct: 158 YSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQN 217

Query: 358 FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV 417
           +V+ W       +    +L  +        L K                     W  IP 
Sbjct: 218 YVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYK---------------------WKQIPD 256

Query: 418 TPPGSTQ--ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                T   +    +     Y  +V   +       S  +   T
Sbjct: 257 CENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDT 300

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 64.6 bits (156), Expect = 1e-11
 Identities = 22/206 (10%), Positives = 57/206 (27%), Gaps = 28/206 (13%)

Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV---TPPGSTQI 304
           +P  +     + +  L W        ++   +   Y++ G  +W+ +             
Sbjct: 6   SPQKVEVDIIDDNFILRWNRSDESVGNV--TFSFDYQKTGMDNWIKLSGCQNITSTKCNF 63

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQP 364
           +  +L      + ++  + E        +            P  V +   +   VI   P
Sbjct: 64  SSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISP 122

Query: 365 PLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQ 424
             + + +     + +                   +Y     +  +     I       ++
Sbjct: 123 GTKDSVMWALDGLSF-------------------TYSLVIWKNSSGVEERIENI---YSR 160

Query: 425 ITINRLTPATTYEFQVVGKNELGDGM 450
             I +L+P TTY  +V         +
Sbjct: 161 HKIYKLSPETTYCLKVKAALLTSWKI 186

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIVG 206
             +P    ++ E+      G+ + + C  ++       +I W  RDGV L   NR +I G
Sbjct: 6   QAQPWGVPVEVES-LLVHPGDLLQLRCRLRDD----VQSINW-LRDGVQLVESNRTRITG 59

Query: 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
             + +      D G Y CV S+   +      + V
Sbjct: 60  EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 5/70 (7%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
           +C ++ +   Q + W +D   L          +    +          G Y C   +  G
Sbjct: 30  RCRLRDDV--QSINWLRDGVQLVESNR---TRITGEEVEVRDSIPADSGLYACVTSSPSG 84

Query: 137 TQGSSGQMEV 146
           +  +   + V
Sbjct: 85  SDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
          R  I     + +      DSGLY C  S+  G        +NV
Sbjct: 54 RTRIT-GEEVEVRDSIPADSGLYACVTSSPSGSDTTY-FSVNV 94

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 65.1 bits (159), Expect = 5e-13
 Identities = 29/139 (20%), Positives = 44/139 (31%), Gaps = 29/139 (20%)

Query: 326 GDGMLSNIVVVKTKGPKP-GPPRNVSVTEVNNGFV-ISWQPPLERAS--LIQYYLIKYRT 381
           G    S  V V+T    P   P+N+S+   N+  + I WQPP        I  Y I+YR 
Sbjct: 1   GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60

Query: 382 DGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV 441
                 + +                          +         I  L   T Y F+V 
Sbjct: 61  ASRKSDVTE-------------------------TLVSGTQLSQLIEGLDRGTEYNFRVA 95

Query: 442 GKNELGDGMLSNIVVVKTK 460
                G G  ++ +  +T 
Sbjct: 96  ALTINGTGPATDWLSAETF 114

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 64.3 bits (157), Expect = 8e-13
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 12/117 (10%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLK------QNYVIWYREQGNKDWLPIPVTPPG 300
           AP N++       S+ + W P     P           Y I YR+   K  +   +    
Sbjct: 21  APQNLSLEVRNSKSIMIHWQP-----PAPATQNGQITGYKIRYRKASRKSDVTETLVSGT 75

Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG 357
                I  L   T Y F+V      G G  ++ +  +T        R   V+  ++G
Sbjct: 76  QLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETRVPEVSGPSSG 132

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 64.3 bits (157), Expect = 5e-13
 Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 5/102 (4%)

Query: 246 PHAPYNITGVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P  P  +       +  L+W  P    G  L   Y + Y          I          
Sbjct: 8   PGRPTMMISTTAMNTALLQWHPPKELPGELL--GYRLQYCRADEARPNTIDFGKD-DQHF 64

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
           T+  L   TTY F++  KN  G G      +   +    GP 
Sbjct: 65  TVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDL-SGPS 105

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 60.9 bits (148), Expect = 9e-12
 Identities = 22/122 (18%), Positives = 33/122 (27%), Gaps = 26/122 (21%)

Query: 338 TKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEE 397
           +    PG P  +  T   N  ++ W PP E    +  Y +                    
Sbjct: 3   SGSSGPGRPTMMISTTAMNTALLQWHPPKELPGELLGYRL-------------------- 42

Query: 398 NSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
                +Y          I          T+  L   TTY F++  KN  G G      + 
Sbjct: 43  -----QYCRADEARPNTIDFGKD-DQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIR 96

Query: 458 KT 459
             
Sbjct: 97  TP 98

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 67.0 bits (163), Expect = 5e-13
 Identities = 23/197 (11%), Positives = 54/197 (27%), Gaps = 34/197 (17%)

Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST---QITINRLTPATTYE 316
             T EW          +   +       ++    IP    G+     + ++ +  A  Y 
Sbjct: 16  ISTCEWKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYT 75

Query: 317 FQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG-FVISWQPPLERASLIQY- 374
             +    +L            ++  KP  P N++V    +   +++W  P    + +   
Sbjct: 76  LDLWAGQQLL----WKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNH 131

Query: 375 --YLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTP 432
             Y +   ++          +   E S                        +I  + L  
Sbjct: 132 LTYAVNIWSENDPADFRIYNVTYLEPSL-----------------------RIAASTLKS 168

Query: 433 ATTYEFQVVGKNELGDG 449
             +Y  +V    +  + 
Sbjct: 169 GISYRARVRAWAQAYNT 185

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 245 QPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQN--YVIWYREQGNKDWLPIP--VTPP 299
           +P AP N+T       ++ L W   Y     L  +  Y +    + +     I       
Sbjct: 97  KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLE 156

Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDG 328
            S +I  + L    +Y  +V    +  + 
Sbjct: 157 PSLRIAASTLKSGISYRARVRAWAQAYNT 185

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 64.3 bits (157), Expect = 5e-13
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 246 PHAPYNITGV-ATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
              P     +  T  +VTL+W  P Y+GG  +  +Y++  R+  N  WL    +     +
Sbjct: 11  IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKI-TSYIVEKRDLPNGRWLKANFSNILENE 69

Query: 304 ITINRLTPATTYEFQVVGKNELGDG----MLSNIVVVK 337
            T++ LT    YEF+V+ KN  G        S+ +  +
Sbjct: 70  FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 107

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 31/122 (25%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
             PP       +    V + W  P       I  Y++                       
Sbjct: 11  IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIV----------------------- 47

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG----MLSNIVV 456
             E R+  N  WL    +     + T++ LT    YEF+V+ KN  G        S+ + 
Sbjct: 48  --EKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAIT 105

Query: 457 VK 458
            +
Sbjct: 106 CR 107

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 64.3 bits (157), Expect = 5e-13
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----G 206
            P     PE   + + GESV++  +     GTQ  T TW +          +K+     G
Sbjct: 7   GPQIIQFPEDQ-KVRAGESVELFGKVT---GTQPITCTWMKFRKQIQESEHMKVENSENG 62

Query: 207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
             +TI   R+   G Y  +V N++ +      L V    P  P
Sbjct: 63  SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK-PDPP 104

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLF-TRVNQNHQGRYTCTPYN 133
            +   +         TW K ++ ++  +   +   +NGS L      Q H G YT    N
Sbjct: 26  ELFGKVTGTQPIT-CTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN 84

Query: 134 AHGTQGSSGQMEVLVR-KPPAFTIKPEA 160
             G++ +   + V+ +  PPA T  P  
Sbjct: 85  KLGSRQAQVNLTVVDKPDPPAGT--PSG 110

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 11  RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV-EFPAKVTFTPT 64
            + ++       L I     +  G Y   V N +G  QA    L V + P     TP+
Sbjct: 53  HMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQ-VNLTVVDKPDPPAGTPS 109

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 64.4 bits (157), Expect = 6e-13
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 246 PHAPYN--ITGVATEFSVTLEW-LPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           P  P    + G     S  + W  P  +GG  +   YV+   E  N +     +    + 
Sbjct: 18  PGIPVKPSVKGKIHSHSFKITWDPPKDNGGATI-NKYVVEMAEGSNGNKW-EMIYSGATR 75

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
           +   +RL P   Y  +V   ++ G   +S  ++V+T     GP 
Sbjct: 76  EHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTP-AVSGPS 118

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 29/137 (21%)

Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTE--VNNGFVISWQPPLE-RASLIQYYLIKYRTD 382
           G    S +V   T   KPG P   SV     ++ F I+W PP +   + I  Y+++    
Sbjct: 1   GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEG 60

Query: 383 GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 442
            +                           W  I      + +   +RL P   Y  +V  
Sbjct: 61  SNGNK------------------------WEMIYSGA--TREHLCDRLNPGCFYRLRVYC 94

Query: 443 KNELGDGMLSNIVVVKT 459
            ++ G   +S  ++V+T
Sbjct: 95  ISDGGQSAVSESLLVQT 111

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 69.3 bits (168), Expect = 6e-13
 Identities = 34/225 (15%), Positives = 63/225 (28%), Gaps = 37/225 (16%)

Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQIT-- 305
            P NI       +  L+W   Y+      Q ++  + ++   + L      P    +   
Sbjct: 209 PPENIEVSVQNQNYVLKWDYTYANMTFQVQ-WLHAFLKRNPGNHLYKWKQIPDCENVKTT 267

Query: 306 ----INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVIS 361
                  +     Y  +V   +       S  +   T+      P   ++  +++ F I 
Sbjct: 268 QCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIY 327

Query: 362 WQPPL--ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP 419
              P       +IQ Y + Y                        + E  +     I    
Sbjct: 328 IGAPKQSGNTPVIQDYPLIYEI---------------------IFWENTSNAERKIIEK- 365

Query: 420 PGSTQITINRLTPATTYEFQVVGKNELGD----GMLSNIVVVKTK 460
              T +T+  L P T Y  +              + S+ V  KTK
Sbjct: 366 --KTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTK 408

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 61.2 bits (147), Expect = 3e-10
 Identities = 24/204 (11%), Positives = 58/204 (28%), Gaps = 28/204 (13%)

Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV---TPPGSTQI 304
           +P  +     + +  L W        ++   +   Y++ G  +W+ +             
Sbjct: 10  SPQKVEVDIIDDNFILRWNRSDESVGNV--TFSFDYQKTGMDNWIKLSGCQNITSTKCNF 67

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQP 364
           +  +L      + ++  + E              +  + GPP  V +   +   VI   P
Sbjct: 68  SSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPE-VHLEAEDKAIVIHISP 126

Query: 365 PLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQ 424
             + + +     + +                    Y     +  +     I       ++
Sbjct: 127 GTKDSVMWALDGLSFT-------------------YSLVIWKNSSGVEERIENI---YSR 164

Query: 425 ITINRLTPATTYEFQVVGKNELGD 448
             I +L+P TTY  +V        
Sbjct: 165 HKIYKLSPETTYCLKVKAALLTSW 188

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 34/226 (15%), Positives = 61/226 (26%), Gaps = 35/226 (15%)

Query: 244 TQPHAPYNITGVATEFSVTLEWLPGYSGG-----PDLKQNYVIWYREQGNKDWLPIPVTP 298
            Q   P  +   A + ++ +   PG           L   Y +   +  +     I    
Sbjct: 104 AQIGPP-EVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENI- 161

Query: 299 PGSTQITINRLTPATTYEFQVVGKNELGD---GMLSNIVVVKTKGPKPGPPRNVSVTEVN 355
              ++  I +L+P TTY  +V                  +  T   +  PP N+ V+  N
Sbjct: 162 --YSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQN 219

Query: 356 NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI 415
             +V+ W       +    +L  +        L K                     W  I
Sbjct: 220 QNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYK---------------------WKQI 258

Query: 416 PVTPPGSTQ--ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
           P      T   +    +     Y  +V   +       S  +   T
Sbjct: 259 PDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDT 304

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 63.1 bits (154), Expect = 8e-13
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN-- 208
            P        + + K G + ++  +     G   PT TW   D  A     + +   +  
Sbjct: 2   KPKILTASRKI-KIKAGFTHNLEVDFI---GAPDPTATWTVGDSGAALAPELLVDAKSST 57

Query: 209 --ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
             I     +R D G Y+  V NE+       +++V+
Sbjct: 58  TSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 4/76 (5%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLF-TRVNQNHQGRYTCTPYN 133
            ++      P     TWT             +    + + +F     +   G Y     N
Sbjct: 21  NLEVDFIGAPDPT-ATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN 79

Query: 134 AHGTQGSSGQMEVLVR 149
             G        EV+V+
Sbjct: 80  ELGE--DEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 7  SLETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
          +L   +++       ++        DSG Y  +V N +GE   A   + V+
Sbjct: 44 ALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGE-DEAIFEVIVQ 93

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 64.3 bits (157), Expect = 8e-13
 Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 27/139 (19%)

Query: 326 GDGMLSNIVVVKTKGPKP-GPPRNVSVTEVNNGFV-ISWQPPLERAS--LIQYYLIKYRT 381
           G    S  +  +T    P  PP+ V    + +  V +SW PP   +   +I  Y + Y  
Sbjct: 1   GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60

Query: 382 DGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV 441
                                      ++    +       +   +  L   T Y   V 
Sbjct: 61  VDG-----------------------EDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVR 97

Query: 442 GKNELGDGMLSNIVVVKTK 460
              ++G G  S+ V+V+T 
Sbjct: 98  AHTDVGPGPESSPVLVRTD 116

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQN-----YVIWYREQGNKDWLPIPV--TPP 299
            P  +  V+    +V + W+P     P   +N     Y + Y     +D     V     
Sbjct: 21  PPQKVMCVSMGSTTVRVSWVPP----PADSRNGVITQYSVAYEAVDGEDRGRHVVDGISR 76

Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPG-PPRNVSVT 352
             +   +  L   T Y   V    ++G G  S+ V+V+T    P  PPR V   
Sbjct: 77  EHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESG 130

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 63.2 bits (154), Expect = 1e-12
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 17/119 (14%)

Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
           G+ GSSG         P F   P  +   + G+   M C+     G   P ++WQ     
Sbjct: 1   GSSGSSGF-------RPHFLQAPGDL-TVQEGKLCRMDCKV---SGLPTPDLSWQLDGKP 49

Query: 196 ALPKNRVKIV---GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
             P +  K++    G  +  IE +   D G Y C+ +N       + +LVV   +   P
Sbjct: 50  VRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA-KESGP 107

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNA 134
            C +   PT   ++W  D + + P     ++V +NG  SL+   V     G YTC   N 
Sbjct: 30  DCKVSGLPTPD-LSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNR 88

Query: 135 HGTQGSSGQMEVLVRKPP 152
            G    S ++ V  ++  
Sbjct: 89  AGQNSFSLELVVAAKESG 106

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 11  RVVIKKDG--TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
           +++++++G  +L+I PV S D+G+Y C  +N  G+       L V 
Sbjct: 57  KMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNS-FSLELVVA 101

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 246 PHAPYNITGVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P  P  + G      + L W  P   GG  +   Y +        +     V      + 
Sbjct: 11  PCLPPRLQGRPKAKEIQLRWGPPLVDGGSPI-SCYSVEMSPIEKDEP--REVYQGSEVEC 67

Query: 305 TINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGPKPG 344
           T++ L P  TY F++   N++G G      +I      GP  G
Sbjct: 68  TVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSGPSSG 110

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 30/120 (25%)

Query: 343 PGPPRNVSVTEV--NNGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
           PGP     +          + W PPL +  S I  Y +                      
Sbjct: 9   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSV---------------------- 46

Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
              E       +     V      + T++ L P  TY F++   N++G G  S    + T
Sbjct: 47  ---EMSPIEKDEP--REVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITT 101

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 5/102 (4%)

Query: 244 TQPHAPYNITGV--ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
             P  P            S TL W             Y++   +     +  + V     
Sbjct: 8   PVPATPILQLEECCTHNNSATLSWKQPPLSTVPA-DGYILELDDGNGGQFREVYVGK--E 64

Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
           T  T++ L   +TY  +V   N+ G    S  +V++T     
Sbjct: 65  TMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 61.7 bits (150), Expect = 4e-12
 Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 29/127 (22%)

Query: 336 VKTKGPKPGPPR-NVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQI 393
             + GP P  P   +     +N    +SW+ P         Y++                
Sbjct: 3   SGSSGPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYIL---------------- 46

Query: 394 RPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
                    E  +     +  + V     T  T++ L   +TY  +V   N+ G    S 
Sbjct: 47  ---------ELDDGNGGQFREVYVGK--ETMCTVDGLHFNSTYNARVKAFNKTGVSPYSK 95

Query: 454 IVVVKTK 460
            +V++T 
Sbjct: 96  TLVLQTS 102

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNIT 210
                ++P +      G ++ + C A    G+  P   W  ++ + L             
Sbjct: 3   KLQICVEPTSQK-LMPGSTLVLQCVA---VGSPIPHYQW-FKNELPLTHET----KKLYM 53

Query: 211 IEGLRRVDFGYYECVVSNEVATIV-QAAQLVVE 242
           +  +     G Y C V N+  +   +  +++++
Sbjct: 54  VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 10/99 (10%)

Query: 56  PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL 115
             ++   PT Q L      V+QC    +P   Y  W K++  L  ++T           +
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHY-QWFKNELPL-THET-------KKLYM 53

Query: 116 FTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAF 154
              V+  HQG Y C  YN   +Q S   +E+++ +    
Sbjct: 54  VPYVDLEHQGTYWCHVYNDRDSQDSKK-VEIIIDELNNL 91

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 6/40 (15%), Positives = 14/40 (35%)

Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
              ++  V  +  G Y C V N      + +  + ++  
Sbjct: 49 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 88

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 64.3 bits (156), Expect = 4e-12
 Identities = 25/232 (10%), Positives = 59/232 (25%), Gaps = 48/232 (20%)

Query: 242 EGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYR-----EQGNKDWLPIPV 296
           E     AP  ++ ++T     L W P  + G  +   Y + Y+        +  W+P   
Sbjct: 3   EVAILPAPQQLSVLSTNMKHLLMWSPVIAPGETV--YYSVEYQGEYESLYTSHIWIPSS- 59

Query: 297 TPPGSTQITI------NRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVS 350
                +          + +T    Y  +V           S +     +         + 
Sbjct: 60  ---WCSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGME 116

Query: 351 VTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNK 410
           +T+     VI  +    +    ++ +                           Y  +   
Sbjct: 117 ITKDGFHLVIELEDLGPQ---FEFLVA--------------------------YWRREPG 147

Query: 411 DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD--GMLSNIVVVKTK 460
               + +   G   + +  + P   Y  +     +        S    V+ +
Sbjct: 148 AEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQ 199

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 9/92 (9%)

Query: 251 NITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLT 310
            IT       + LE L     GP  +     W RE G ++   + +   G   + +  + 
Sbjct: 116 EITKDGFHLVIELEDL-----GPQFEFLVAYWRREPGAEEH--VKMVRSGGIPVHLETME 168

Query: 311 PATTYEFQVVGKNELGD--GMLSNIVVVKTKG 340
           P   Y  +     +        S    V+ +G
Sbjct: 169 PGAAYCVKAQTFVKAIGRYSAFSQTECVEVQG 200

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 61.7 bits (150), Expect = 4e-12
 Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 27/118 (22%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           P     +         + +SW  P +   +I  Y I+Y                      
Sbjct: 8   PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEH----------------- 50

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                    +     +    +    I+ L P   Y  QV  +   G G  S  +  +T
Sbjct: 51  ---------NEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT 99

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 57.8 bits (140), Expect = 9e-11
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 246 PHAPYNITGVA-TEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
           P     +  V+ T  S+TL W  P    G     +Y I Y E+ + ++    +    +  
Sbjct: 8   PSTVPIMHQVSATMRSITLSWPQPEQPNGI--ILDYEIRYYEKEHNEFNSS-MARSQTNT 64

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
             I+ L P   Y  QV  +   G G  S  +  +T       P +
Sbjct: 65  ARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT--LTDSGPSS 107

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 61.3 bits (149), Expect = 5e-12
 Identities = 19/118 (16%), Positives = 30/118 (25%), Gaps = 26/118 (22%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
              P  + V +       ISW         ++YY I Y   G    + +  +        
Sbjct: 8   SSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTV-------- 59

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                            P   +  TI+ L P   Y   V   +    G   N  +   
Sbjct: 60  -----------------PGYYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPISIN 100

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 2/98 (2%)

Query: 242 EGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPG 300
             +    P  +  V  T  S+ + W   YS   ++ + Y I Y E G    +     P  
Sbjct: 4   GSSVSSVPTKLEVVDATPTSLKISWDAYYSSWQNV-KYYRITYGETGGDSPVQEFTVPGY 62

Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
            +  TI+ L P   Y   V   +    G   N  +   
Sbjct: 63  YSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPISIN 100

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 61.8 bits (150), Expect = 6e-12
 Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 7/91 (7%)

Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKD----WLPIPVTPPGSTQITINRLTPATTY 315
           +V + W       P   Q Y + YR+         W  +    P      +  L    TY
Sbjct: 31  TVQVTWTV--DRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTY 88

Query: 316 EFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
           E +V        GM S    V+T   + GP 
Sbjct: 89  EIKVRPYFNEFQGMDSESKTVRTT-EESGPS 118

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 56.4 bits (136), Expect = 4e-10
 Identities = 25/126 (19%), Positives = 34/126 (26%), Gaps = 31/126 (24%)

Query: 334 VVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQI 393
           V+V+   P    P  V V         +W     +   IQ Y + YR             
Sbjct: 17  VLVRLHNPVVLTPTTVQV---------TWTVD-RQPQFIQGYRVMYRQTSGL-------- 58

Query: 394 RPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
                        Q    W  +    P      +  L    TYE +V        GM S 
Sbjct: 59  -------------QATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSE 105

Query: 454 IVVVKT 459
              V+T
Sbjct: 106 SKTVRT 111

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 60.5 bits (147), Expect = 9e-12
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 29/106 (27%)

Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
           PP N+ VT +     V++WQPP+     I+  L+                          
Sbjct: 4   PPFNIKVTNITLTTAVVTWQPPILP---IEGILV-------------------------T 35

Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
           +  + +             T +T+  L P TTYE ++V +N     
Sbjct: 36  FGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIVARNGQQYS 81

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLK-QNYVIWYREQGNKDWLPIPVTPPGSTQIT 305
            P+NI     T  +  + W P     P L  +  ++ +  + +             T +T
Sbjct: 4   PPFNIKVTNITLTTAVVTWQP-----PILPIEGILVTFGRKNDPSDETTVDLTSSITSLT 58

Query: 306 INRLTPATTYEFQVVGKNELGDG 328
           +  L P TTYE ++V +N     
Sbjct: 59  LTNLEPNTTYEIRIVARNGQQYS 81

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 60.4 bits (147), Expect = 9e-12
 Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 8/100 (8%)

Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-- 205
           +   P      +               +A    G  +PT  W +         + K+   
Sbjct: 3   ISSKPVIVTGLQDT-TVSSDSVAKFAVKA---TGEPRPTAIWTKDGKAITQGGKYKLSED 58

Query: 206 GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
            G     I      D G Y C V N   ++  + +L ++ 
Sbjct: 59  KGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
                  P      WTKD + +         + ++     L   + + +  G YTCT  N
Sbjct: 27  AVKATGEPRPT-AIWTKDGKAITQ--GGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKN 83

Query: 134 AHGTQGSSGQMEV 146
           + G+  SS ++ +
Sbjct: 84  SAGSVSSSCKLTI 96

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
          +  + +D     L I+   + DSGLY C V N  G    +   L ++
Sbjct: 52 KYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVS-SSCKLTIK 97

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 62.9 bits (152), Expect = 1e-11
 Identities = 16/166 (9%), Positives = 40/166 (24%), Gaps = 16/166 (9%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
            + C      +    +W        P   K        +L    V+  ++  Y CT    
Sbjct: 20  SLTCSTTGCESPF-FSWRTQIDS--PLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCE 76

Query: 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG 194
                    ++V +   P       +      G+ + + C   +     +  I    +  
Sbjct: 77  SRK--LEKGIQVEIYSFPKDPEIHLSGPLE-AGKPITVKCSVADVYPFDRLEIDL-LKGD 132

Query: 195 VALP---------KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA 231
             +          +  ++     +T   +         C     + 
Sbjct: 133 HLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHID 178

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 59.4 bits (143), Expect = 2e-10
 Identities = 25/151 (16%), Positives = 44/151 (29%), Gaps = 13/151 (8%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
             TL +NPV   +   Y+C  +    + +     + +    K         L       V
Sbjct: 53  TSTLTMNPVSFGNEHSYLCTATCESRKLEKG-IQVEIYSFPKDPEIHLSGPLEAGKPITV 111

Query: 77  QCHIKANP--TFQYVTWTKDKRLL---EPYQTKDIVVMQNGS--LLFTRVNQNHQGRYTC 129
           +C +          +   K   L+   E  +  D   ++  S  + FT V ++      C
Sbjct: 112 KCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVC 171

Query: 130 TPYNAHGTQGSSGQ-----MEVLVRKPPAFT 155
                     S         E+ V   P  T
Sbjct: 172 RAKLHIDEMDSVPTVRQAVKELQVYISPKNT 202

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 51.3 bits (122), Expect = 1e-07
 Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 4/94 (4%)

Query: 154 FTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIVGGNITIE 212
               PE+ Y  ++G+SV + C      G + P  +W+ +    L      +     +T+ 
Sbjct: 3   IETTPESRYLAQIGDSVSLTCST---TGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMN 59

Query: 213 GLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
            +   +   Y C  + E   + +  Q+ +     
Sbjct: 60  PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPK 93

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 60.7 bits (147), Expect = 1e-11
 Identities = 21/110 (19%), Positives = 32/110 (29%), Gaps = 7/110 (6%)

Query: 242 EGTQPHAPYNITGVA-TEFSVTLEW----LPGYSGGPDLKQNYVIWYREQGNKDWLPIPV 296
             T    P  +  VA T  +V + W    +P      +++  Y + +R   +        
Sbjct: 15  LSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRL-YTVRWRTSFSASA-KYKS 72

Query: 297 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
               S   T   L P T YEF V+          S      T        
Sbjct: 73  EDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPSS 122

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 59.1 bits (143), Expect = 4e-11
 Identities = 23/135 (17%), Positives = 34/135 (25%), Gaps = 31/135 (22%)

Query: 331 SNIVVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPL----ERASLIQYYLIKYRTDGSW 385
                V        PP  V    + +  V +SW        ++ S ++ Y +++RT  S 
Sbjct: 7   GFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFS- 65

Query: 386 KTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE 445
                                               S   T   L P T YEF V+    
Sbjct: 66  -------------------------ASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKN 100

Query: 446 LGDGMLSNIVVVKTK 460
                 S      T 
Sbjct: 101 RRSSTWSMTAHATTY 115

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 63.1 bits (153), Expect = 1e-11
 Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 11/158 (6%)

Query: 7   SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
            L    +   +  L I  V   D+G+Y C +S   G     +  + V  P        + 
Sbjct: 69  RLLKDQLSLGNAALQITDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQRILV 126

Query: 67  YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT-----RVNQ 121
             P   +  + C  +  P  + V WT     +   +T      +    LF      R+N 
Sbjct: 127 VDPVTSEHELTCQAEGYPKAE-VIWTSSDHQVLSGKTTTTNS-KREEKLFNVTSTLRINT 184

Query: 122 NHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
                + CT       +  +   E+++ + P      E
Sbjct: 185 TTNEIFYCTFRRLDPEE--NHTAELVIPELPLAHPPNE 220

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 60.4 bits (146), Expect = 1e-10
 Identities = 30/158 (18%), Positives = 46/158 (29%), Gaps = 15/158 (9%)

Query: 104 KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQ 163
           KD + + N +L  T V     G Y C   +  G       ++V     P   I    +  
Sbjct: 72  KDQLSLGNAALQITDVKLQDAGVYRCM-ISYGGADYKRITVKV---NAPYNKINQRILVV 127

Query: 164 RKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP----KNRVKIVGGNITIEG---LRR 216
             V    ++ C+A   EG  K  + W   D   L         K       +     +  
Sbjct: 128 DPVTSEHELTCQA---EGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT 184

Query: 217 VDFGYYECVVSNEVATIVQAAQLVVEGT-QPHAPYNIT 253
                + C            A+LV+      H P   T
Sbjct: 185 TTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNERT 222

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 40/166 (24%)

Query: 154 FTIK-PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR----------RDGVALP---- 198
           FT+  P+ +Y  + G ++ + C+    +      +                G        
Sbjct: 2   FTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQH 61

Query: 199 ---KNRVKIVGGNIT-------IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHA 248
              + R +++   ++       I  ++  D G Y C++S       +   + V       
Sbjct: 62  SSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKI 120

Query: 249 PYNITGVATEFS-VTL----EWLPGYSGGPDLKQNYVIWYREQGNK 289
              I  V    S   L    E  P         +  VIW       
Sbjct: 121 NQRILVVDPVTSEHELTCQAEGYP---------KAEVIWTSSDHQV 157

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 29/134 (21%), Positives = 41/134 (30%), Gaps = 22/134 (16%)

Query: 331 SNIVVVKTKGPKP-GPPRNVSVTEVNNGFV-ISWQPPLERAS--LIQYYLIKYRTDGSWK 386
           S+     +    P   P NV V  VN+    + W P   ++    +Q Y I Y    S  
Sbjct: 2   SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61

Query: 387 TLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL 446
             N+  I  +                  I       T   +  L P + Y   V   N  
Sbjct: 62  KRNRRHIEKK------------------ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGK 103

Query: 447 GDGMLSNIVVVKTK 460
           G+G  S   V  T 
Sbjct: 104 GEGPASPDRVFNTP 117

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 22/113 (19%), Positives = 30/113 (26%), Gaps = 19/113 (16%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLK------QNYVIWYREQGNKDWLPIP----- 295
           AP N+           + W P       LK      Q Y I+Y +  +            
Sbjct: 17  APGNVRVNVVNSTLAEVHWDP-----VPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKK 71

Query: 296 --VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
                   T   +  L P + Y   V   N  G+G  S   V  T        
Sbjct: 72  ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGPSS 124

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           +    P  +  VA T  S+ + W    S        Y I Y E G    +     P  S+
Sbjct: 3   SVSSVPTKLEVVAATPTSLLISWDAPMSSSSV--YYYRITYGETGGNSPVQEFTVPYSSS 60

Query: 303 QITINRLTPATTYEFQVVGKNELGDG 328
             TI+ L+P   Y   V    E   G
Sbjct: 61  TATISGLSPGVDYTITVYAWGEDSAG 86

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 58.2 bits (141), Expect = 6e-11
 Identities = 23/108 (21%), Positives = 31/108 (28%), Gaps = 27/108 (25%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
              P  + V        +ISW  P   +S + YY I                        
Sbjct: 5   SSVPTKLEVVAATPTSLLISWDAP-MSSSSVYYYRI------------------------ 39

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
             Y E G    +     P  S+  TI+ L+P   Y   V    E   G
Sbjct: 40  -TYGETGGNSPVQEFTVPYSSSTATISGLSPGVDYTITVYAWGEDSAG 86

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 13/102 (12%)

Query: 149 RKPPAFTIKPE---AMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN----- 200
           ++ P +T   +    ++      +V   C A    G   PT+ W + +G    +      
Sbjct: 2   KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG---GNPMPTMRWLK-NGKEFKQEHRIGG 57

Query: 201 -RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
            +V+    ++ +E +   D G Y CVV NE  +I     L V
Sbjct: 58  YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDI--VVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
           +C    NP    + W K+ +  +         V  Q+ SL+   V  + +G YTC   N 
Sbjct: 29  RCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 87

Query: 135 HGTQGSSGQMEVL 147
           +G+   +  ++V+
Sbjct: 88  YGSINHTYHLDVV 100

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 13 VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
          V  +  +L++  V   D G Y C V N  G       +L+V
Sbjct: 60 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT-YHLDV 99

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 64.6 bits (156), Expect = 2e-11
 Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 39/191 (20%)

Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 319
            ++  W            ++ ++Y+   +     +      S  +     +  T +  Q+
Sbjct: 233 VLSCSWEVRKEVASS--VSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQI 290

Query: 320 VGKNELGDGMLSNIVVVKTKGP--------KPGPPRNVSVTEVNNGFVISWQPPLERASL 371
              +    G     V  +            +  PP ++ VT+  + + + W+    R   
Sbjct: 291 PVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPP-SLQVTKDGDSYSLRWETMKMRYEH 349

Query: 372 IQY-YLIKYRTDG-SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINR 429
           I + + I+YR D  +WK                               T   +  + +  
Sbjct: 350 IDHTFEIQYRKDTATWKDSK--------------------------TETLQNAHSMALPA 383

Query: 430 LTPATTYEFQV 440
           L P+T Y  +V
Sbjct: 384 LEPSTRYWARV 394

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 60.0 bits (144), Expect = 6e-10
 Identities = 29/209 (13%), Positives = 61/209 (29%), Gaps = 46/209 (22%)

Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKD--------------WLPIPVTPPGSTQIT 305
            +T  W         +  N  +  R   +                  P P   P    I 
Sbjct: 18  HITCRWADTQDAQRLV--NVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIP 75

Query: 306 INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPP 365
                      F       LG      + V  T+  +P  PR++ ++   + F+++W   
Sbjct: 76  CQSFVVTDVDYFSFQPDRPLGT----RLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVA 131

Query: 366 LE--RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGST 423
           L   ++  +    +++                        Y+   +  W    +    ++
Sbjct: 132 LGSPQSHWLSPGDLEFEV---------------------VYKRLQD-SWEDAAILLSNTS 169

Query: 424 QITIN--RLTPATTYEFQVVGKNELGDGM 450
           Q T+    L P++TY  +V  +   G  +
Sbjct: 170 QATLGPEHLMPSSTYVARVRTRLAPGSRL 198

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 59.2 bits (142), Expect = 9e-10
 Identities = 39/315 (12%), Positives = 86/315 (27%), Gaps = 57/315 (18%)

Query: 171 DMHCEAQEAEGTQKPT-ITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNE 229
            + C   + +  Q+   +T  RR    L +     +  ++              CV+  +
Sbjct: 18  HITCRWADTQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQ 77

Query: 230 VATI---------------VQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPD 274
              +                +    + +  QP  P ++     +    L W         
Sbjct: 78  SFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQS 137

Query: 275 LKQN-----YVIWYREQGNKDWLPIPVTPPGSTQITIN--RLTPATTYEFQVVGKNELGD 327
              +     + + Y+   +  W    +    ++Q T+    L P++TY  +V  +   G 
Sbjct: 138 HWLSPGDLEFEVVYKRLQD-SWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGS 196

Query: 328 GML------SNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYR 380
            +       S  V   ++      P+N+            SW+   E AS + + L    
Sbjct: 197 RLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGL---- 252

Query: 381 TDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
                                  Y+   +     +      S  +     +  T +  Q+
Sbjct: 253 ----------------------FYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQI 290

Query: 441 VGKNELGDGMLSNIV 455
              +    G     V
Sbjct: 291 PVPDPATHGQYIVSV 305

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 50.0 bits (118), Expect = 1e-06
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 1/78 (1%)

Query: 242 EGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
              Q   P ++       S +L W         +   + I YR+           T   +
Sbjct: 318 VNIQMAPP-SLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNA 376

Query: 302 TQITINRLTPATTYEFQV 319
             + +  L P+T Y  +V
Sbjct: 377 HSMALPALEPSTRYWARV 394

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 11/99 (11%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIV---G 206
           PP F   PE M     G    M  +     G   P ++W   +G  +   +  K++    
Sbjct: 5   PPRFIQVPENM-SIDEGRFCRMDFKV---SGLPAPDVSWYL-NGRTVQSDDLHKMIVSEK 59

Query: 207 GNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
           G  +   E +R  D G Y CV  N         QL V  
Sbjct: 60  GLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNA 134
              +   P    V+W  + R ++      ++V + G  SL+F  V  +  G Y C   N 
Sbjct: 26  DFKVSGLPAPD-VSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNR 84

Query: 135 HGTQGSSGQMEVLVRK 150
            G    + Q++VL ++
Sbjct: 85  AGEATFTVQLDVLAKE 100

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 11 RVVIKKDG--TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
          ++++ + G  +L+   V + D+G Y C   N  GE       L+V 
Sbjct: 53 KMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEAT-FTVQLDVL 97

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 7/110 (6%)

Query: 242 EGTQPHAPYNIT-GVATEFSVTLEW----LPGYSGGPDLKQNYVIWYREQGNKDWLPIPV 296
                  P  +   + +  ++ + W    LP +    D +  Y + ++     +      
Sbjct: 5   SSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRY-YTVRWKTNIPANTKYK-N 62

Query: 297 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
               +    +  L P T YEF V+          S      T        
Sbjct: 63  ANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPSS 112

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 56.4 bits (136), Expect = 3e-10
 Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 31/122 (25%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPL----ERASLIQYYLIKYRTDGSWKTLNKGQIRPEE 397
             PP  V  + +++  + I+W        ++ +  +YY ++++T+               
Sbjct: 9   MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIP------------- 55

Query: 398 NSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
                      N  +     T   +    +  L P T YEF V+          S     
Sbjct: 56  ----------ANTKYKNANAT---TLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHG 102

Query: 458 KT 459
            T
Sbjct: 103 TT 104

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 12/108 (11%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
           GSSG       +     ++PE       G +V + CE         P I W + DGV LP
Sbjct: 1   GSSG---SSGLEEVQLVVEPEGG-AVAPGGTVTLTCEV---PAQPSPQIHWMK-DGVPLP 52

Query: 199 KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
                     + +  +   D G Y CV ++      ++  + +   +P
Sbjct: 53  LPP----SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 9/75 (12%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
            C + A P+ Q + W KD           + +  +  L+   +    QG Y+C   ++  
Sbjct: 31  TCEVPAQPSPQ-IHWMKDG--------VPLPLPPSPVLILPEIGPQDQGTYSCVATHSSH 81

Query: 137 TQGSSGQMEVLVRKP 151
               S  + + + +P
Sbjct: 82  GPQESRAVSISIIEP 96

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA-AQAYLNVEFP 56
            + +     L++  +G  D G Y C  ++    PQ      +++  P
Sbjct: 49 VPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317

 Score = 63.4 bits (153), Expect = 3e-11
 Identities = 28/230 (12%), Positives = 58/230 (25%), Gaps = 44/230 (19%)

Query: 227 SNEVATIVQAAQLVVEGTQPHAPYNIT------------GVATEFSVTLEWLPGYSGGPD 274
           S   ++   A      G+   +  N+T              + + S+   W+ G     D
Sbjct: 89  SLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRLRSYQVSLHCTWMVGTDAPED 148

Query: 275 LKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATT----YEFQVVGKNELGDGML 330
            +      Y     +       T   +      R    +         V G ++      
Sbjct: 149 TQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFILSKGRDWLAVLVNGSSKHSAIRP 208

Query: 331 SNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNK 390
            + +       +  PP NV+         I W+ P+    +   +   Y           
Sbjct: 209 FDQLFALHAIDQINPPLNVTAEIEGTRMSIQWEKPVSAFPI---HCFDY----------- 254

Query: 391 GQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
            +++              N             T   I+ +   + Y+ QV
Sbjct: 255 -EVK---------IHNTRNGYL----QIEKLMTNAFISIIDDLSKYDVQV 290

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 11/101 (10%)

Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--- 205
           + PP F +       R  G+ V M    Q   G  KP ++W R +   +  ++ +     
Sbjct: 3   KAPPTFKVSLMDQSVR-EGQDVIMSIRVQ---GEPKPVVSWLR-NRQPVRPDQRRFAEEA 57

Query: 206 -GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
            GG     I    R D G+Y C   NE       A+L V G
Sbjct: 58  EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNA 134
              ++  P    V+W ++++ + P Q +     + G   L      +   G YTC   N 
Sbjct: 26  SIRVQGEPKPV-VSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNE 84

Query: 135 HGTQGSSGQMEV 146
           +G +    ++EV
Sbjct: 85  YGARQCEARLEV 96

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 40.3 bits (95), Expect = 9e-05
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 9  ETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
          + R   + +G    L I      D+G Y C+  N  G  Q  +A L V 
Sbjct: 50 QRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQ-CEARLEVR 97

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238

 Score = 62.3 bits (150), Expect = 3e-11
 Identities = 37/260 (14%), Positives = 77/260 (29%), Gaps = 38/260 (14%)

Query: 205 VGGNITIEGLRRVDFGYYECV---VSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSV 261
           V G++++E L  V  G    V   +   V     A    +   +    +      ++  V
Sbjct: 12  VTGSVSLEALEEVQVGENIEVGVGIDELVNAEAFAYDFTLNYDEN--AFEYVEAISDDGV 69

Query: 262 TLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 321
            +       G   +  + +        +    + +     T+ +   +T ++  + + + 
Sbjct: 70  FVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLV 129

Query: 322 KNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYR 380
               G     NI+   +      P R+   +E+N     ++W  P     L  Y L K  
Sbjct: 130 HEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEGLEGYILYK-- 187

Query: 381 TDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
            DG                               +       T  T  +L   T Y F++
Sbjct: 188 -DGKK-----------------------------VAEIGKDETSYTFKKLNRHTIYNFKI 217

Query: 441 VGKNELGDGMLSNIVVVKTK 460
             K   G+      + ++T 
Sbjct: 218 AAKYSNGEVSSKESLTLRTA 237

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 63.0 bits (152), Expect = 3e-11
 Identities = 27/234 (11%), Positives = 58/234 (24%), Gaps = 11/234 (4%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV 76
           +   V       +    MC  +   G+  A         P +V   P   + P      +
Sbjct: 47  NNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTL 106

Query: 77  QCHIKANPTFQY--VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
           +C ++         V   + ++ L+             +        +H   ++C     
Sbjct: 107 RCQVEGGAPRANLTVVLLRGEKELKREPAVGEPA--EVTTTVLVRRDHHGANFSCRTELD 164

Query: 135 HGTQG------SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT 188
              QG      +S   ++     PA   +  +    +V     + C         +  + 
Sbjct: 165 LRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVH 224

Query: 189 WQRRDGVALPKNRVKIVGGNITIEG-LRRVDFGYYECVVSNEVATIVQAAQLVV 241
               D    P         +      +   D G      +  +    Q     V
Sbjct: 225 LALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV 278

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 49.5 bits (117), Expect = 8e-07
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 5/136 (3%)

Query: 97  LLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTI 156
           +  P   K++++  N   ++   N     +  C      G   +   + V    P    +
Sbjct: 33  IETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWT-PERVEL 91

Query: 157 KPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGL-R 215
            P   +Q  VG+++ + C+ +        T+    R    L +         +T   L R
Sbjct: 92  APLPSWQP-VGKNLTLRCQVEGGAPRANLTVVL-LRGEKELKREPAVGEPAEVTTTVLVR 149

Query: 216 RVDFG-YYECVVSNEV 230
           R   G  + C    ++
Sbjct: 150 RDHHGANFSCRTELDL 165

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 21/150 (14%), Positives = 39/150 (26%), Gaps = 10/150 (6%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIG-------EPQAAQAYLNV-EFPAKVTFTPTVQYL 68
           + T  +          + C     +        E  +A   L     PA      + + L
Sbjct: 141 EVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVL 200

Query: 69  PFRLQGVVQCHIKANP--TFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGR 126
               QG V C +      +   V      + L P  T         + +          R
Sbjct: 201 EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQR 260

Query: 127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTI 156
            TC     + +Q +   + +     P   +
Sbjct: 261 LTCAVILGNQSQETLQTVTIYSFPAPNVIL 290

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 59.1 bits (143), Expect = 4e-11
 Identities = 27/137 (19%), Positives = 41/137 (29%), Gaps = 32/137 (23%)

Query: 326 GDGMLSNIVVVKTKGPKP-GPPRNVSVTEVNNGFVISWQPP--LERASLIQYYLIKYRTD 382
           G    S  V V TK   P  PP NV     +   +++W+    +E  S +  Y + YRT 
Sbjct: 1   GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTS 60

Query: 383 GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 442
                                           + V     T   +  L     Y  +V  
Sbjct: 61  SQNN----------------------------VQVLNTNKTSAELV-LPIKEDYIIEVKA 91

Query: 443 KNELGDGMLSNIVVVKT 459
             + GDG  S  + +  
Sbjct: 92  TTDGGDGTSSEQIRIPR 108

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 47.1 bits (112), Expect = 6e-07
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 14/103 (13%)

Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQN-----YVIWYREQGNKDWLPIPVTPPGST 302
            P N+   AT+  V L W         ++       Y ++YR     +     V     T
Sbjct: 21  PPGNVVWNATDTKVLLNWEQV----KAMENESEVTGYKVFYRTSSQNNV---QVLNTNKT 73

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSN-IVVVKTKGPKPG 344
              +  L     Y  +V    + GDG  S  I + +     P 
Sbjct: 74  SAELV-LPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGPS 115

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 61.4 bits (149), Expect = 5e-11
 Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 15/186 (8%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
           QC          +   K+    E  +        +   +   ++ N  GRY C     H 
Sbjct: 29  QCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHY 88

Query: 137 TQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
               S  +E++V      P  +     +     GE++ + C +           +  +  
Sbjct: 89  RFRYSDTLELVVTGLYGKPFLSADRGLVLM--PGENISLTCSSAHIPF---DRFSLAKEG 143

Query: 194 GVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA-----QLVVEGT--QP 246
            ++LP+++      N ++  +     G Y C      +  + +      +LVV  +  Q 
Sbjct: 144 ELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQD 203

Query: 247 HAPYNI 252
           +   N+
Sbjct: 204 YTTQNL 209

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 21/137 (15%)

Query: 15  KKDGTLVINPVGSDDSGLYMCEVSNGIG--EPQAAQAYLNVEFPAKVTFTPTVQYLPFRL 72
           + D   VI+ + ++ +G Y C+   G            L V     +   P +       
Sbjct: 61  ETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDT-LELVVT---GLYGKPFLSADR--- 113

Query: 73  QGVV--------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQ 124
             V+         C     P  ++    K+   L   Q +        +     V+ N  
Sbjct: 114 GLVLMPGENISLTCSSAHIPFDRFS-LAKEGE-LSLPQHQS--GEHPANFSLGPVDLNVS 169

Query: 125 GRYTCTPYNAHGTQGSS 141
           G Y C  +        S
Sbjct: 170 GIYRCYGWYNRSPYLWS 186

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 58.2 bits (141), Expect = 7e-11
 Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 11/112 (9%)

Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           + P  P  +  +  TE    L W P      +    Y I     G         TP  + 
Sbjct: 6   SGPDGPTQLRALNLTEGFAVLHWKPP----QNPVDTYDIQVTAPGAPPL--QAETPGSAV 59

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEV 354
              ++ L   T Y   V G         ++I    T       PR++   EV
Sbjct: 60  DYPLHDLVLHTNYTATVRGLRGPNLTSPASITFT-TGLE---APRDLEAKEV 107

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 16/109 (14%), Positives = 27/109 (24%), Gaps = 31/109 (28%)

Query: 342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
            P  P  +    +     V+ W+PP    + +  Y I+    G+                
Sbjct: 7   GPDGPTQLRALNLTEGFAVLHWKPPQ---NPVDTYDIQVTAPGAPPLQA----------- 52

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
                            TP  +    ++ L   T Y   V G       
Sbjct: 53  ----------------ETPGSAVDYPLHDLVLHTNYTATVRGLRGPNLT 85

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 58.3 bits (141), Expect = 9e-11
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 9/115 (7%)

Query: 51  LNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP-----YQTKD 105
           L V +P +V      +    RL+  ++  ++ NP    + W  + + L        +   
Sbjct: 3   LTVYYPPRVVSLEEPEL---RLEHCIEFVVRGNPPPT-LHWLHNGQPLRESKIIHVEYYQ 58

Query: 106 IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA 160
              +  G LLF +    + G YT    N  GT   +     L    P   + P  
Sbjct: 59  EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTP 113

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 26/127 (20%)

Query: 143 QMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-R 201
            + V    PP      E      +     +    +   G   PT+ W   +G  L ++  
Sbjct: 2   ALTVYY--PPRVVSLEEPE----LRLEHCIEFVVR---GNPPPTLHW-LHNGQPLRESKI 51

Query: 202 VKIVG--------GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV-------EGTQP 246
           + +          G +        + G Y  +  N + T  Q             +   P
Sbjct: 52  IHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSP 111

Query: 247 HAPYNIT 253
             P  +T
Sbjct: 112 TPPITVT 118

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 57.7 bits (140), Expect = 9e-11
 Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 31/120 (25%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERAS--LIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
            G P+N+ VT +      ++W PP+       I  Y + +R   S + L           
Sbjct: 9   SGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQ---------- 58

Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                                  T+ T+  L P TTY+ +V      G G LS  +  +T
Sbjct: 59  ------------------NITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 15/98 (15%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLK------QNYVIWYREQGNKDWLPIPVTPPG 300
            P N+     T  +  L W P     P L        +Y + +R+  ++  L    T   
Sbjct: 11  FPQNLHVTGLTTSTTELAWDP-----PVLAERNGRIISYTVVFRDINSQQELQNITT--- 62

Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
            T+ T+  L P TTY+ +V      G G LS  +  +T
Sbjct: 63  DTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 12/111 (10%)

Query: 140 SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-- 197
                    ++ P F  KP++  +   G+SV + C+         P + W+R +   +  
Sbjct: 4   HHHHHSHEHKRAPMFIYKPQSK-KVLEGDSVKLECQIS---AIPPPKLFWKR-NNEMVQF 58

Query: 198 PKNRVKIV---GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
             +R+ +     G +T  I+ + + D G+Y     NE        +L V  
Sbjct: 59  NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG----SLLFTRVNQNHQGRYTCTPY 132
           +C I A P  + + W ++  +++   T  I + Q+     +LL   VN+   G YT +  
Sbjct: 36  ECQISAIPPPK-LFWKRNNEMVQF-NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAV 93

Query: 133 NAHGTQGSSGQMEVLVRKPPAFTI 156
           N  G    + +++V     P  T+
Sbjct: 94  NEAGVTTCNTRLDVTA--RPNQTL 115

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 11  RVVIKKDG----TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT 60
           R+ + +D     TL+I  V   D+G Y     N  G        L+V      T
Sbjct: 62  RISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGV-TTCNTRLDVTARPNQT 114

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 19/115 (16%)

Query: 142 GQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN- 200
           G +      PP     P  +   K GE   ++C+A   EG   PTI W  + G  +  + 
Sbjct: 1   GSLRQ-EDFPPRIVEHPSDLIVSK-GEPATLNCKA---EGRPTPTIEW-YKGGERVETDK 54

Query: 201 ------RVKIVGG-----NITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVVEG 243
                 R+ +  G      I      R D G Y CV  N +   V   A L V  
Sbjct: 55  DDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 47.5 bits (113), Expect = 5e-07
 Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 10/113 (8%)

Query: 53  VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD---IVVM 109
            +FP ++   P+   +       + C  +  PT   + W K    +E  +       +++
Sbjct: 6   EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT-IEWYKGGERVETDKDDPRSHRMLL 64

Query: 110 QNGSLLFTRV-----NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIK 157
            +GSL F R+     ++  +G Y C   N  G    S    + V         
Sbjct: 65  PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGE-AVSHDASLEVAAAAHHHHH 116

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 2   NTKVGSLETRVVIKKDGTLVI-----NPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
            T      +  ++   G+L             D G+Y+C   N +GE  +  A L V   
Sbjct: 51  ETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA 110

Query: 57  AKVT 60
           A   
Sbjct: 111 AHHH 114

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 60.1 bits (145), Expect = 1e-10
 Identities = 26/205 (12%), Positives = 47/205 (22%), Gaps = 38/205 (18%)

Query: 246 PHAPYNITGVATEFS-VTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST-- 302
              P  +         +   W    S G      Y   Y+ +     L      P +   
Sbjct: 21  ARGPEELLCFTERLEDLVCFWEEAASAGV-GPGQYSFSYQLEDEPWKLCRLHQAPTARGA 79

Query: 303 -----QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG 357
                 +     +     E +V   +        + V+   +      P  +     +  
Sbjct: 80  VRFWCSLPTADTSSFVPLELRVTAASGAP---RYHRVIHINEVVLLDAPVGLVARLADES 136

Query: 358 --FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI 415
              V+ W PP E         I+Y                       +         +  
Sbjct: 137 GHVVLRWLPPPETPM---TSHIRYEV---------------------DVSAGQGAGSVQR 172

Query: 416 PVTPPGSTQITINRLTPATTYEFQV 440
                G T+  ++ L   T Y F V
Sbjct: 173 VEILEGRTECVLSNLRGRTRYTFAV 197

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 2/101 (1%)

Query: 221 YYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFS--VTLEWLPGYSGGPDLKQN 278
               V +   A        + E     AP  +     + S  V L WLP           
Sbjct: 97  LELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIR 156

Query: 279 YVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 319
           Y +          +       G T+  ++ L   T Y F V
Sbjct: 157 YEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAV 197

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 7/107 (6%)

Query: 241 VEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPP 299
             G +  +  ++  V      + L W       P    +Y +    Q  +    +     
Sbjct: 5   SSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVL---- 60

Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
              ++ + +L P TTY  +V     LG G  S     +T  P  GP 
Sbjct: 61  -EPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT-SPPSGPS 105

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 34/125 (27%)

Query: 338 TKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERAS--LIQYYLIKYRTDGSWKTLNKGQIR 394
           + G +     ++ + +     + ++W     R     + Y L                  
Sbjct: 5   SSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYEL------------------ 46

Query: 395 PEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 454
                       Q  +    +        ++ + +L P TTY  +V     LG G  S  
Sbjct: 47  --------HVLNQDEEWHQMVL-----EPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPD 93

Query: 455 VVVKT 459
              +T
Sbjct: 94  HEFRT 98

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 57.3 bits (138), Expect = 2e-10
 Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 9/106 (8%)

Query: 260 SVTLEWLP--------GYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTP 311
           +V L W P                   Y +     G KD     V     T IT+N L P
Sbjct: 33  TVVLTWSPPSSLINGETDESSVPELYGYEVLISSTG-KDGKYKSVYVGEETNITLNDLKP 91

Query: 312 ATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG 357
           A  Y  +V  +     G  S   +  T   +P  P    ++  ++G
Sbjct: 92  AMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPRISGPSSG 137

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 53.1 bits (127), Expect = 7e-09
 Identities = 26/136 (19%), Positives = 36/136 (26%), Gaps = 18/136 (13%)

Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS 384
           G    S     K              +++     V++W PP    +              
Sbjct: 1   GSSGSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETD---------- 50

Query: 385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN 444
                     PE   Y       G KD     V     T IT+N L PA  Y  +V  + 
Sbjct: 51  ------ESSVPELYGYEVLISSTG-KDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEY 103

Query: 445 ELGDGMLSNIVVVKTK 460
               G  S   +  T 
Sbjct: 104 NSIKGTPSEAEIFTTL 119

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 21/139 (15%), Positives = 36/139 (25%), Gaps = 29/139 (20%)

Query: 326 GDGMLSNIVVVKTKGPKP-GPPRNVSVTEVNN--GFVISWQPPLERAS--LIQYYLIKYR 380
           G    S  ++  T    P   P NV+V    +     I W  P  +     +  Y I + 
Sbjct: 1   GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60

Query: 381 TDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 440
              +                L E                   ++  I+      T   ++
Sbjct: 61  WQSA----------GISKELLEE--------------VGQNGSRARISVQVHNATCTVRI 96

Query: 441 VGKNELGDGMLSNIVVVKT 459
                 G G  S+ V +  
Sbjct: 97  AAVTRGGVGPFSDPVKIFI 115

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 16/110 (14%)

Query: 248 APYNITGVA--TEFSVTLEWLPGYSGGPDLK------QNYVIWYREQGNKDWLPIPVTPP 299
           AP N+T     +  +V + W+      P  K        Y I +  Q       +     
Sbjct: 21  APLNVTVFLNESSDNVDIRWMK-----PPTKQQDGELVGYRISHVWQSAGISKELLEEVG 75

Query: 300 GS-TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
            + ++  I+      T   ++      G G  S+ V +    P    P +
Sbjct: 76  QNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFI--PAHSGPSS 123

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 56.4 bits (136), Expect = 4e-10
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 239 LVVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT 297
           L  +G+    P  +  VA T  S+ + W           + Y I Y E G    +     
Sbjct: 22  LYFQGSVSDVPTKLEVVAATPTSLLISWDAPAVTV----RYYRITYGETGGNSPVQEFTV 77

Query: 298 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 335
           P   +  TI+ L P   Y   V     L   +  +  +
Sbjct: 78  PGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPI 115

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 52.6 bits (126), Expect = 8e-09
 Identities = 21/115 (18%), Positives = 31/115 (26%), Gaps = 29/115 (25%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
              P  + V        +ISW  P   A  ++YY I                        
Sbjct: 29  SDVPTKLEVVAATPTSLLISWDAP---AVTVRYYRI------------------------ 61

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
             Y E G    +     P   +  TI+ L P   Y   V     L   +  +  +
Sbjct: 62  -TYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPI 115

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 55.9 bits (135), Expect = 5e-10
 Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 8/106 (7%)

Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           +    P N+   + T  S+ + W P          +Y + Y              P   +
Sbjct: 6   SGRSPPSNLALASETPDSLQVSWTPP----LGRVLHYWLTYAPASGLGPEKSVSVPGARS 61

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
            +T+  L  AT Y   V      G     +          P  P +
Sbjct: 62  HVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTA---CPSGPSS 104

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 55.1 bits (133), Expect = 7e-10
 Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 31/117 (26%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
             PP N+++     +   +SW PP      + +Y + Y                      
Sbjct: 8   RSPPSNLALASETPDSLQVSWTPP---LGRVLHYWLTYAPASG----------------- 47

Query: 402 GEYREQGNKDWLPIPVTPPGS-TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
                          V+ PG+ + +T+  L  AT Y   V      G     +    
Sbjct: 48  ---------LGPEKSVSVPGARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQ 95

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 55.1 bits (133), Expect = 8e-10
 Identities = 15/109 (13%), Positives = 28/109 (25%), Gaps = 29/109 (26%)

Query: 342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
           +   P  + V +V     +I+W PP      +  + +                       
Sbjct: 2   RLDAPSQIEVKDVTDTTALITWMPPS---QPVDGFEL----------------------- 35

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
              Y  +                Q +I  L P T YE  ++ +      
Sbjct: 36  --TYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSS 82

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 6/101 (5%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
           AP  I     T+ +  + W+P  S   D    + + Y  +                Q +I
Sbjct: 5   APSQIEVKDVTDTTALITWMPP-SQPVD---GFELTYGIKDVPGDRTTIDLTEDENQYSI 60

Query: 307 NRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPR 347
             L P T YE  ++ +        +      T         
Sbjct: 61  GNLKPDTEYEVSLISRRGDMSSNPAKETFT-TGLAAALEHH 100

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 55.4 bits (133), Expect = 9e-10
 Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 20/124 (16%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR---RDGV 195
           GSSG           F  KP+     KVGE +    + +  +  +KPTI W +    D  
Sbjct: 1   GSSGSS------GILFIEKPQGG-TVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLA 53

Query: 196 ALPKNRVKIVG----------GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245
           +     +++              + I   +    G Y C V+ +      +  L V  + 
Sbjct: 54  SKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113

Query: 246 PHAP 249
              P
Sbjct: 114 GTTP 117

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 17  DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLP 69
              + I     + +G Y CEV+       +    L V        TP +   P
Sbjct: 74  TFEMQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVH--ESTGTTPNIDSGP 123

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 54.6 bits (132), Expect = 9e-10
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 10/101 (9%)

Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIV- 205
           +   P  T++  +  +   G++       Q         + W   +GV L ++ ++    
Sbjct: 5   LDHAPRITLRMRSH-RVPCGQNTRFILNVQ---SKPTAEVKWYH-NGVELQESSKIHYTN 59

Query: 206 -GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
             G +T  I      D G Y  V +N        A L V G
Sbjct: 60  TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
             ++++ PT + V W  +   L+   +  I         +L     + +  G Y     N
Sbjct: 29  ILNVQSKPTAE-VKWYHNGVELQE--SSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTN 85

Query: 134 AHGTQGSSGQMEV 146
             G       ++V
Sbjct: 86  YKGEASDYATLDV 98

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
          ++         TL I    +DDSG Y    +N  GE     A L+V 
Sbjct: 54 KIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEAS-DYATLDVT 99

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 22/93 (23%), Positives = 30/93 (32%), Gaps = 5/93 (5%)

Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           +    P  +  VA T  S+ + W    S        Y I Y E G    +     P  S+
Sbjct: 3   SVSSVPTKLEVVAATPTSLLISWDASSSSV----SYYRITYGETGGNSPVQEFTVPGSSS 58

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVV 335
             TI+ L+P   Y   V       D   S    
Sbjct: 59  TATISGLSPGVDYTITVYAYYSYYDLYYSYSPS 91

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 24/115 (20%), Positives = 31/115 (26%), Gaps = 29/115 (25%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
              P  + V        +ISW      +S + YY I Y   G                  
Sbjct: 5   SSVPTKLEVVAATPTSLLISWDAS---SSSVSYYRITYGETG------------------ 43

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
                 GN       V P  S+  TI+ L+P   Y   V       D   S    
Sbjct: 44  ------GNSPVQEFTV-PGSSSTATISGLSPGVDYTITVYAYYSYYDLYYSYSPS 91

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 18/122 (14%)

Query: 133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
           ++  +  +S  + V    P  FT       +   G +  + CE      ++   + W  +
Sbjct: 2   SSGSSGRTSAMLTVRAL-PIKFTEGLRNE-EATEGATAVLRCEL-----SKMAPVEW-WK 53

Query: 193 DGVALPKN-RVKIV--GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH 247
               L    R  +   G      I GL   D G Y C+   E  +    A L V    P 
Sbjct: 54  GHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTS----AMLTVRA-MPS 108

Query: 248 AP 249
            P
Sbjct: 109 GP 110

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 24/122 (19%), Positives = 35/122 (28%), Gaps = 17/122 (13%)

Query: 38  SNGIGEPQAAQAYLNV-EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR 96
           S   G      A L V   P K T     +        V++C +        V W K   
Sbjct: 3   SGSSGR---TSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAP---VEWWKGHE 56

Query: 97  LLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA 153
            L         + Q+G    L    +     G Y C      G + +S  + V    P  
Sbjct: 57  TLRD--GDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRA-MPSG 109

Query: 154 FT 155
            +
Sbjct: 110 PS 111

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 20/109 (18%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL- 197
           GSSG          AF    +  YQ   G  V    E        K  + W  ++G  + 
Sbjct: 1   GSSGS------SGAAFAKILDPAYQVDKGGRVRFVVEL----ADPKLEVKW-YKNGQEIR 49

Query: 198 PKNRVKIVG-GNI---TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           P  +      G      I   +  D   Y     +E  +     +L V 
Sbjct: 50  PSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCS----TELFVR 94

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 8/49 (16%)

Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
          + + +  G    L IN     D   Y     +     +     L V   
Sbjct: 53 KYIFEHKGCQRILFINNCQMTDDSEYYVTAGD-----EKCSTELFVRSG 96

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 13/80 (16%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
              + A+P  + V W K+ + + P  +   +    G    L            Y  T   
Sbjct: 29  VVEL-ADPKLE-VKWYKNGQEIRP--STKYIFEHKGCQRILFINNCQMTDDSEYYVT--- 81

Query: 134 AHGTQGSSGQMEVLVRKPPA 153
           A   + S+   E+ VR  P+
Sbjct: 82  AGDEKCST---ELFVRSGPS 98

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 14/104 (13%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP------------ 198
              F ++P+      VG S+        A   + P + W +   V L             
Sbjct: 4   IGLFVMRPQDGEV-TVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62

Query: 199 -KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
                K+    + I   +    G Y C VS +         L V
Sbjct: 63  YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 1/43 (2%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
           R        L I       +G Y CEVS        +   L V
Sbjct: 65  RASKVYLFELHITDAQPAFTGSYRCEVSTKDKF-DCSNFNLTV 106

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 11/114 (9%)

Query: 47  AQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDI 106
           +   L V  P  ++ T T Q+     +G ++C I++ P    + W+  + +LE   +   
Sbjct: 5   SSGTLTVNGPPIISSTQT-QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRY 63

Query: 107 VVMQN-------GSLLFTRVNQNHQGR-YTCTPYNAHGTQGSSGQMEVLVRKPP 152
            V           +L  + + +      Y CT +N+ G+   +  + +  +   
Sbjct: 64  TVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS--DTEIIRLKEQGSE 115

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 17/122 (13%)

Query: 140 SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALP 198
           S     + V  PP  +   +  +    GE   + C       T  P  I W  ++ V   
Sbjct: 3   SGSSGTLTVNGPPIIS-STQTQHALH-GEKGQIKCFI---RSTPPPDRIAWSWKENVLES 57

Query: 199 KNRVKI----------VGGNITIEGLRRVDFG-YYECVVSNEVATIVQAAQLVVEGTQPH 247
               +           V   +TI  + R DF   Y C   N   +  +  +L  +G++  
Sbjct: 58  GTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 117

Query: 248 AP 249
            P
Sbjct: 118 GP 119

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
           AP ++     T+ S+T+ W P  +        Y I Y              PP ST +TI
Sbjct: 4   APTDLQVTNVTDTSITVSWTPPSATI----TGYRITYTPSNGPGEPKELTVPPSSTSVTI 59

Query: 307 NRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP 343
             LTP   Y   V    +  +          T G   
Sbjct: 60  TGLTPGVEYVVSVYALKDNQESPPLV-GTQTTGGHHH 95

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 52.4 bits (126), Expect = 5e-09
 Identities = 23/107 (21%), Positives = 31/107 (28%), Gaps = 29/107 (27%)

Query: 344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402
             P ++ VT V      +SW PP   ++ I  Y I                         
Sbjct: 3   DAPTDLQVTNVTDTSITVSWTPP---SATITGYRI------------------------- 34

Query: 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
            Y              PP ST +TI  LTP   Y   V    +  + 
Sbjct: 35  TYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVSVYALKDNQES 81

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 26/118 (22%), Positives = 36/118 (30%), Gaps = 18/118 (15%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
           GSSG         P F +K +       G  V   C      G  KP I W  +DG  + 
Sbjct: 1   GSSGSSG-----APFFEMKLKHYKIF-EGMPVTFTCRVA---GNPKPKIYW-FKDGKQIS 50

Query: 199 KNRVKIV-----GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
                        G  +         D G Y  + +N    I    +L+V+      P
Sbjct: 51  PKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAV-NSGP 107

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
            C +  NP  + + W KD + + P      +        SL  T    +  G YT    N
Sbjct: 29  TCRVAGNPKPK-IYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAAN 87

Query: 134 AHGTQGSSGQMEVLVRKPP 152
             G    +G++ V      
Sbjct: 88  PQGRISCTGRLMVQAVNSG 106

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 5/48 (10%)

Query: 11  RVVIKKDG----TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
              I++D     +L       DD G Y    +N  G        L V+
Sbjct: 55  HYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRIS-CTGRLMVQ 101

>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex, fibronectin-III, cytokine, glycoprotein, polymorphism, secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R* Length = 211

 Score = 55.9 bits (134), Expect = 3e-09
 Identities = 30/202 (14%), Positives = 53/202 (26%), Gaps = 29/202 (14%)

Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV---TPPGST 302
                ++   ++ F   L W  G  G PD    Y I Y+  G +DW+           S 
Sbjct: 5   SDLLQHVKFQSSNFENILTWDSGPEGTPDT--VYSIEYKTYGERDWVAKKGCQRITRKSC 62

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGP----KPGPPRNVSVTEVNNGF 358
            +T+        Y  +V   +    G  S   +             PP  V+        
Sbjct: 63  NLTVETGNLTELYYARVTAVSA---GGRSATKMTDRFSSLQHTTLKPPD-VTCISKVRSI 118

Query: 359 VISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT 418
            +   P          + +                   +  Y  E +   N+ +      
Sbjct: 119 QMIVHPTPTPIRAGDGHRLTLEDIFH------------DLFYHLELQV--NRTYQMHLGG 164

Query: 419 PPGSTQITINRLTPATTYEFQV 440
                +     LTP T +   +
Sbjct: 165 K--QREYEFFGLTPDTEFLGTI 184

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B* Length = 214

 Score = 56.0 bits (134), Expect = 3e-09
 Identities = 28/201 (13%), Positives = 58/201 (28%), Gaps = 37/201 (18%)

Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINR-------LTPA 312
            ++  W    +      Q +  W   +  +    +      S    +         LT  
Sbjct: 17  QISCVWSQDGALQDTSCQVHA-WPDRRRWQQTCELLPVSQASWACNLILGAPDSQKLTTV 75

Query: 313 TTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG-FVISWQPPLERASL 371
                +V+ +  +   +++       +  +   P ++ V  V      ISW+        
Sbjct: 76  DIVTLRVLCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYF 135

Query: 372 IQY--YLIKYRTDG-SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITIN 428
            ++  +  +  + G +W+                           P+         I + 
Sbjct: 136 ERHLEFEARTLSPGHTWEEA-------------------------PLLTLKQKQEWICLE 170

Query: 429 RLTPATTYEFQVVGKNELGDG 449
            LTP T YEFQV  K   G+ 
Sbjct: 171 TLTPDTQYEFQVRVKPLQGEF 191

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B* Length = 214

 Score = 49.0 bits (116), Expect = 7e-07
 Identities = 25/135 (18%), Positives = 41/135 (30%), Gaps = 10/135 (7%)

Query: 223 ECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATE-FSVTLEWLPGYSGGPDLKQ-NYV 280
            C        +        E  +  AP ++  V  E     + W    +     +   + 
Sbjct: 83  LCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFE 142

Query: 281 IWYREQGNK-DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGML----SNIVV 335
                 G+  +  P+         I +  LTP T YEFQV  K   G+       S  + 
Sbjct: 143 ARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLA 202

Query: 336 VKTKGPKPGPPRNVS 350
            +T   KP      +
Sbjct: 203 FRT---KPAALGKDT 214

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 52.8 bits (127), Expect = 4e-09
 Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 31/116 (26%)

Query: 342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
               PR++   EV     +++W  P         YL+ + T G                 
Sbjct: 7   GLEAPRDLEAKEVTPRTALLTWTEP---PVRPAGYLLSFHTPG----------------- 46

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
            G+ +E          + P G T   +  L P+T+Y  ++            +   
Sbjct: 47  -GQTQEI---------LLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSF 92

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 7/104 (6%)

Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           +   AP ++     T  +  L W       P     Y++ +   G +      + P G T
Sbjct: 6   SGLEAPRDLEAKEVTPRTALLTWTEP-PVRPA---GYLLSFHTPGGQTQ--EILLPGGIT 59

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
              +  L P+T+Y  ++            +           GP 
Sbjct: 60  SHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLRISGPS 103

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 52.4 bits (126), Expect = 5e-09
 Identities = 14/106 (13%), Positives = 30/106 (28%), Gaps = 29/106 (27%)

Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
            P+ ++ T+V+ +   I+W+ P      +  Y +                          
Sbjct: 4   RPKGLAFTDVDVDSIKIAWESP---QGQVSRYRV-------------------------T 35

Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
           Y    +      P          +  L P + Y   VV  ++  + 
Sbjct: 36  YSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMES 81

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 11/82 (13%), Positives = 21/82 (25%), Gaps = 5/82 (6%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
            P  +        S+ + W             Y + Y    +      P          +
Sbjct: 4   RPKGLAFTDVDVDSIKIAWESP----QGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAEL 59

Query: 307 NRLTPATTYEFQVVGKNELGDG 328
             L P + Y   VV  ++  + 
Sbjct: 60  QGLRPGSEYTVSVVALHDDMES 81

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 52.4 bits (126), Expect = 6e-09
 Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 12/106 (11%)

Query: 53  VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP------YQTKDI 106
           V F   +TF  +           +   +K NP    + W  +  +L              
Sbjct: 1   VHFAPTITFLESP---TSDHHWCIPFTVKGNPKPA-LQWFYNGAILNESKYICTKIHVTN 56

Query: 107 VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP 152
               +G L        + G YT    N +G      Q+       P
Sbjct: 57  HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK--DEKQISAHFMGWP 100

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 18/106 (16%)

Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR------ 201
           V   P  T                +       +G  KP + W   +G  L +++      
Sbjct: 1   VHFAPTITFLESP----TSDHHWCIPFTV---KGNPKPALQWFY-NGAILNESKYICTKI 52

Query: 202 ----VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
                    G + ++    ++ G Y  +  NE     +       G
Sbjct: 53  HVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
          G L ++     ++G Y     N  G+ +  Q   +  
Sbjct: 62 GCLQLDNPTHMNNGDYTLIAKNEYGKDE-KQISAHFM 97

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 54.2 bits (130), Expect = 6e-09
 Identities = 24/170 (14%), Positives = 43/170 (25%), Gaps = 31/170 (18%)

Query: 72  LQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM-----------QNGSLLFTRVN 120
           + G V  H+ +N   + V W K K  +   +  +                +GSL    + 
Sbjct: 9   VYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68

Query: 121 QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAE 180
            + +  Y     N   T      + VL        I  E         +  + C   E  
Sbjct: 69  SSDEDEYEMESPNITDTM--KFFLYVLEM-VSKPMIYWE-------CSNATLTC---EVL 115

Query: 181 GTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEV 230
                 +   +                  T+          ++C   N V
Sbjct: 116 EGTDVELKLYQG-------KEHLRSLRQKTMSYQWTNLRAPFKCKAVNRV 158

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 19/130 (14%), Positives = 35/130 (26%), Gaps = 21/130 (16%)

Query: 13  VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV-EFPAKVTFTPTVQYLPFR 71
           +    G+L I  + S D   Y  E  N        + +L V E  +K             
Sbjct: 55  LDTVSGSLTIYNLTSSDEDEYEMESPNITDT---MKFFLYVLEMVSKPMIYWECSNA--- 108

Query: 72  LQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTP 131
               + C +      +     + K  L   + K +          +    N +  + C  
Sbjct: 109 ---TLTCEVLEGTDVEL-KLYQGKEHLRSLRQKTM----------SYQWTNLRAPFKCKA 154

Query: 132 YNAHGTQGSS 141
            N    +   
Sbjct: 155 VNRVSQESEM 164

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.1 bits (138), Expect = 6e-09
 Identities = 24/145 (16%), Positives = 42/145 (28%), Gaps = 12/145 (8%)

Query: 113 SLLFTRVNQNHQGRYTC-TPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
             L   +  N      C  P +  G               P     P  +     G   +
Sbjct: 313 WWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDL-NISEGRMAE 371

Query: 172 MHCEAQEAEGTQKPTITWQRRDGVAL----PKNRVKIVG-GNITIEGLRRVDFGYYECVV 226
           + C           ++ W   +G  L       R+ ++  G +    +   D G Y C+V
Sbjct: 372 LKCRT-----PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMV 426

Query: 227 SNEVATIVQAAQLVVEGTQPHAPYN 251
           +N       +A L V     H  ++
Sbjct: 427 TNVAGNSNASAYLNVSTAGTHHHHH 451

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 5   VGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
             S   R+ +  DGTL  + V   D+G+Y C V+N  G    A AYLNV
Sbjct: 394 HASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGN-SNASAYLNV 441

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 63  PTVQYLPFRLQGV----VQCHIKANPTFQYVTWTKDKRLLEPYQTKD--IVVMQNGSLLF 116
           P +   P  L        +   +  P    V W      +  + ++   I V+ +G+L F
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRTPPMSS-VKWLLPNGTVLSHASRHPRISVLNDGTLNF 411

Query: 117 TRVNQNHQGRYTCTPYNAHGT 137
           + V  +  G YTC   N  G 
Sbjct: 412 SHVLLSDTGVYTCMVTNVAGN 432

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--KNRVKIV 205
            +K  AF  K E  YQ   G  + +  E           + W  ++G  +    ++    
Sbjct: 12  EKKSTAFQKKLEPAYQVSKGHKIRLTVEL----ADHDAEVKW-LKNGQEIQMSGSKYIFE 66

Query: 206 G-GNI---TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
             G     TI      D   Y+CVV  E  +     +L V+
Sbjct: 67  SIGAKRTLTISQCSLADDAAYQCVVGGEKCS----TELFVK 103

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 8/47 (17%)

Query: 11  RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
           + + +  G   TL I+     D   Y C V       +     L V+
Sbjct: 62  KYIFESIGAKRTLTISQCSLADDAAYQCVVGG-----EKCSTELFVK 103

>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor complex, immune system; 2.52A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R Length = 214

 Score = 54.7 bits (131), Expect = 8e-09
 Identities = 35/210 (16%), Positives = 54/210 (25%), Gaps = 39/210 (18%)

Query: 243 GTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           GT+  +P ++   A  F   L W P           Y +     G + W  I       +
Sbjct: 2   GTELPSPPSVWFEAEFFHHILHWTPIPQQSEST--CYEVALLRYGIESWNSI----SQCS 55

Query: 303 QITINRLTPAT-------TYEFQVVGKNELGDGMLSNIVVVKTKGP----KPGPPRNVSV 351
           Q     LT  T        Y  +V  +   G    S   V  T+             V++
Sbjct: 56  QTLSYDLTAVTLDLYHSNGYRARV--RAVDGSRH-SQWTVTNTRFSVDEVTLTVGS-VNL 111

Query: 352 TEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYR-EQGNK 410
              N   +   Q P  + +  Q                   I      Y    R   G  
Sbjct: 112 EIHNGFILGKIQLPRPKMAPAQDTY--------------ESIFSHFREYEIAIRKVPGQF 157

Query: 411 DWLPIPVTPPGSTQITINRLTPATTYEFQV 440
            +    V      Q ++        +  QV
Sbjct: 158 TFTHKKVK---HEQFSLLTSGEVGEFCVQV 184

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.3 bits (136), Expect = 8e-09
 Identities = 31/144 (21%), Positives = 49/144 (34%), Gaps = 11/144 (7%)

Query: 113 SLLFTRVNQNHQGRYTC-TPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD 171
             +      N      C TP N  G               P     P  +     G + +
Sbjct: 302 WWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADL-NVTEGMAAE 360

Query: 172 MHCEAQEAEGTQKPTITWQRRDGVALP----KNRVKIVG-GNITIEGLRRVDFGYYECVV 226
           + C A     T   +++W   +G  +     K R+ ++  G +    +   D G Y C+V
Sbjct: 361 LKCRA----STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMV 416

Query: 227 SNEVATIVQAAQLVVEGTQPHAPY 250
           SN V     +A L V GT  H  +
Sbjct: 417 SNSVGNTTASATLNVTGTHHHHHH 440

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 5   VGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
            G+ + R+ +  DGTL    V   D+G+Y C VSN +G    A A LNV
Sbjct: 384 HGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTT-ASATLNV 431

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 89  VTWTKDKRLLEPYQTKD--IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV 146
           V+W      +  +      I V+ +G+L FT V     G YTC   N+ G   ++    +
Sbjct: 372 VSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGN--TTASATL 429

Query: 147 LVRKPP 152
            V    
Sbjct: 430 NVTGTH 435

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 54.5 bits (130), Expect = 8e-09
 Identities = 19/185 (10%), Positives = 42/185 (22%), Gaps = 45/185 (24%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
           ++ C  +A      +TW KD +++                      ++ +G Y C     
Sbjct: 22  LLTCDAEAKN----ITWFKDGKMIGFLTE------DKKKWNLGSNAKDPRGMYQCKGSQN 71

Query: 135 HGTQGSSGQM----------EVLVRKPPAFT--------------IKPEAMYQRKVGESV 170
                                                        I          G +V
Sbjct: 72  KSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTV 131

Query: 171 DMHCEAQEAEGTQKPTITWQRRDGVALPKNR----VKIVGGNITIEGLRRV-DFGYYECV 225
            + C            I W + +   +  +     +     +++++    +   GYY C 
Sbjct: 132 ILTCPQ-----YPGSEILW-QHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 185

Query: 226 VSNEV 230
                
Sbjct: 186 PRGSK 190

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 52.6 bits (125), Expect = 3e-08
 Identities = 17/148 (11%), Positives = 36/148 (24%), Gaps = 26/148 (17%)

Query: 19  TLVINPVGSDDSGLYMCEVSNGIGEP-----------QAAQAYLNVEFPAKVTFTPTVQY 67
              +     D  G+Y C+ S    +P            A +     +   K         
Sbjct: 50  KWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSD 109

Query: 68  LPFRLQGV-------------VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSL 114
               + G+             V       P  + + W  + + +   +    +      L
Sbjct: 110 GNEEMGGITQTPYKVSISGTTVILTCPQYPGSE-ILWQHNDKNIGGDEDDKNIGSDEDHL 168

Query: 115 LFTRVNQ-NHQGRYTCTPYNAHGTQGSS 141
                ++    G Y C P  +     + 
Sbjct: 169 SLKEFSELEQSGYYVCYPRGSKPEDANF 196

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 39.9 bits (92), Expect = 7e-04
 Identities = 20/138 (14%), Positives = 34/138 (24%), Gaps = 10/138 (7%)

Query: 164 RKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYE 223
            +   SV + C        +   ITW + DG  +             +    +   G Y+
Sbjct: 15  YQEDGSVLLTC------DAEAKNITWFK-DGKMIGFL--TEDKKKWNLGSNAKDPRGMYQ 65

Query: 224 CVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWY 283
           C  S   +  +Q    +               A +     +   G      + Q      
Sbjct: 66  CKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQT-PYKV 124

Query: 284 REQGNKDWLPIPVTPPGS 301
              G    L  P  P   
Sbjct: 125 SISGTTVILTCPQYPGSE 142

>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine receptor, sugarbridge, fibronectine domain, signaling, cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC; 2.80A {Homo sapiens} Length = 219

 Score = 54.8 bits (131), Expect = 9e-09
 Identities = 30/202 (14%), Positives = 58/202 (28%), Gaps = 34/202 (16%)

Query: 260 SVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-LPIPVTPPGST----QITINRLTPATT 314
           +V             L   +   Y E  ++     +  +   +T       ++       
Sbjct: 13  TVICILEMWNLHPSTLTLTWQDQYEELKDEATSCSLHRSAHNATHATYTCHMDVFHFMAD 72

Query: 315 YEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQY 374
             F V   ++ G         +  +  KP PP +V+VT     + ISW+   E  +    
Sbjct: 73  DIFSVQITDQSGQYSQECGSFLLAESIKPAPPFDVTVTFSGQ-YQISWRSDYEDPAFYML 131

Query: 375 -----YLIKYRTDG-SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITIN 428
                Y ++YR  G  W    + ++   ++                       S  +   
Sbjct: 132 KGKLQYELQYRNRGDPWAVSPRRKLISVDSR----------------------SVSLLPL 169

Query: 429 RLTPATTYEFQVVGKNELGDGM 450
                ++YE QV      G   
Sbjct: 170 EFRKDSSYELQVRAGPMPGSSY 191

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 52.0 bits (125), Expect = 9e-09
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 22/111 (19%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKV--GESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
           GSSG         P   + P+          E V + CE    +       TW  +DG  
Sbjct: 1   GSSGS------SGPVHILSPQDKVSLTFTTSERVVLTCELSRVD----FPATW-YKDGQK 49

Query: 197 L-PKNRVKIVGGN----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           +     + +        + +   +  D G +EC      A       + V+
Sbjct: 50  VEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSAF----FGVTVQ 96

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 8/50 (16%)

Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA 57
           +V+K DG    L++      DSG + C          +A   + V+ P+
Sbjct: 55 LLVVKMDGRKHRLILPEAKVQDSGEFECRTEG-----VSAFFGVTVQDPS 99

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 15/83 (18%)

Query: 77  QCHI-KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPY 132
            C + + +      TW KD + +E   ++ +VV  +G    L+         G + C   
Sbjct: 31  TCELSRVDFP---ATWYKDGQKVEE--SELLVVKMDGRKHRLILPEAKVQDSGEFECR-- 83

Query: 133 NAHGTQGSSGQMEVLVRKPPAFT 155
               T+G S    V V+ P   +
Sbjct: 84  ----TEGVSAFFGVTVQDPSGPS 102

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 24/123 (19%), Positives = 36/123 (29%), Gaps = 31/123 (25%)

Query: 340 GPK--PGPPRNVSVTEV-NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPE 396
           GP        + SVTE+  + FV+SW    +    +  + +                   
Sbjct: 1   GPLGSHLVATSESVTEITASSFVVSWVSASDT---VSGFRV------------------- 38

Query: 397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
                 EY      D       P  +T + I  L P   Y   V   +E G+  L     
Sbjct: 39  ------EYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTS 92

Query: 457 VKT 459
             T
Sbjct: 93  QTT 95

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 5/97 (5%)

Query: 243 GTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
                   + +    T  S  + W+       D    + + Y      D       P  +
Sbjct: 3   LGSHLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTA 58

Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
           T + I  L P   Y   V   +E G+  L       T
Sbjct: 59  TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 25/169 (14%), Positives = 46/169 (27%), Gaps = 35/169 (20%)

Query: 77  QCHIKANPTFQYVTWTK--DKRLLEPYQTKDIVVM------------QNGSLLFTRVNQN 122
                   ++Q +TW    ++++LE +      V              NG+L    V++ 
Sbjct: 20  TILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKE 79

Query: 123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKP-PAFTIKPEAMYQRKVGESVDMHCEAQEAEG 181
            +G Y     +    Q     MEV      P    +           +  + C   E   
Sbjct: 80  DRGDYYMRMLHETEDQ-WKITMEVYEMVSKPMIYWE---------CSNATLTC---EVLE 126

Query: 182 TQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEV 230
                +    +    L   R        T+          ++C   N V
Sbjct: 127 GTDVELKL-YQGKEHLRSLR------QKTMSYQWTNLRAPFKCKAVNRV 168

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 20/130 (15%)

Query: 13  VIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV-EFPAKVTFTPTVQYLPFR 71
           + K +G L I  V  +D G Y   + +   +       + V E  +K             
Sbjct: 64  LDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKIT--MEVYEMVSKPMIYWECSNA--- 118

Query: 72  LQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTP 131
               + C +      +     + K  L   + K +          +    N +  + C  
Sbjct: 119 ---TLTCEVLEGTDVEL-KLYQGKEHLRSLRQKTM----------SYQWTNLRAPFKCKA 164

Query: 132 YNAHGTQGSS 141
            N    +   
Sbjct: 165 VNRVSQESEM 174

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 7/100 (7%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
           AP N+     TE S+ L W    +       +++I Y+E            P       +
Sbjct: 4   APKNLVVSEVTEDSLRLSWTAPDAAF----DSFMIQYQESEKVGEAINLTVPGSERSYDL 59

Query: 307 NRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
             L P T Y   + G          +     T G      
Sbjct: 60  TGLKPGTEYTVSIYGVKGGHRSNPLSAEF--TTGGHHHHH 97

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 29/106 (27%)

Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
            P+N+ V+EV  +   +SW  P    +    ++I+Y+                       
Sbjct: 4   APKNLVVSEVTEDSLRLSWTAP---DAAFDSFMIQYQESE-------------------- 40

Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
                  + + + V P       +  L P T Y   + G       
Sbjct: 41  ----KVGEAINLTV-PGSERSYDLTGLKPGTEYTVSIYGVKGGHRS 81

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 17/125 (13%)

Query: 154 FTIK-PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR------RDGVALPKNRVKIVG 206
           FT+  P+ +Y   VG SV + C+    +  +   +   R       +  +L   R  ++ 
Sbjct: 3   FTVTAPKEVYTVDVGSSVSLECDF---DRRECTELEGIRASLQKVENDTSLQSERATLLE 59

Query: 207 GNIT-------IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEF 259
             +        I  ++  D G Y C+V    A   +   + V+ +       I  V    
Sbjct: 60  EQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTG 119

Query: 260 SVTLE 264
            V L 
Sbjct: 120 EVQLT 124

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 21/114 (18%), Positives = 31/114 (27%), Gaps = 10/114 (8%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
              P ++  VA T  S+ + W  G        Q Y I Y E G    +     P      
Sbjct: 4   SDVPRDLEVVAATPTSLLISWDSG----RGSYQYYRITYGETGGNSPVQEFTVPGPVHTA 59

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGP-----KPGPPRNVSVTE 353
           TI+ L P   Y   V    +            ++        +   P       
Sbjct: 60  TISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQHHHHH 113

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 20/112 (17%), Positives = 26/112 (23%), Gaps = 29/112 (25%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
              PR++ V        +ISW          QYY I                        
Sbjct: 4   SDVPRDLEVVAATPTSLLISWDSG---RGSYQYYRI------------------------ 36

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
             Y E G    +     P      TI+ L P   Y   V    +        
Sbjct: 37  -TYGETGGNSPVQEFTVPGPVHTATISGLKPGVDYTITVYAVTDHKPHADGP 87

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 22/155 (14%), Positives = 41/155 (26%), Gaps = 11/155 (7%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
            C    N          +  L    + K    +         +N    G+Y+C       
Sbjct: 27  CCQ--GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL 84

Query: 137 TQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
               S  ++++V +    P  ++ P        GE V  +C       T        +  
Sbjct: 85  WSEPSNLLDLVVTEMYDTPTLSVHPGPEVIS--GEKVTFYCRLD----TATSMFLLLKEG 138

Query: 194 GVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSN 228
             +  +     V     +  +     G Y C  S 
Sbjct: 139 RSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSY 173

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 6/105 (5%)

Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           +    P ++     +  +  + W       P   +   + Y              P  +T
Sbjct: 6   SGLAPPRHLGFSDVSHDAARVFWEGA----PRPVRLVRVTYVSSEGGHSGQTEA-PGNAT 60

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPR 347
              +  L+ +TTY  +V      G        V   K P P    
Sbjct: 61  SAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGP 105

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 30/108 (27%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
             PPR++  ++V+ +   + W+        ++   + Y +                    
Sbjct: 8   LAPPRHLGFSDVSHDAARVFWEGA---PRPVRLVRVTYVSSEG----------------- 47

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
           G   +            P  +T   +  L+ +TTY  +V      G  
Sbjct: 48  GHSGQT---------EAPGNATSAMLGPLSSSTTYTVRVTCLYPGGGS 86

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 244 TQPHAPYNITGVA--TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
           + P  P  ++ V   +  +  L W    +  P    +Y +    +    +  I  T   S
Sbjct: 3   SAPAFPTGLSAVLDSSGNTANLTW----NAAPGA-NSYNVKRSTKSGGPYTTI-ATNITS 56

Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
           T  T   +   T Y + V   +   + + S   +++ 
Sbjct: 57  TNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 458
           SY  +   +    +  I  T   ST  T   +   T Y + V   +   + + S   +++
Sbjct: 34  SYNVKRSTKSGGPYTTI-ATNITSTNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQ 92

Query: 459 T 459
            
Sbjct: 93  Y 93

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 6/95 (6%)

Query: 158 PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN---RVKIVGGNITIEGL 214
            E+ ++  +G+++ + C+    +      +     +   L +     V +  G++  + +
Sbjct: 252 KESAWEAHLGDTLTIRCDT---KQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKV 308

Query: 215 RRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
           +  D G Y C    E      + +L V     H  
Sbjct: 309 QVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGH 343

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 3/76 (3%)

Query: 78  CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137
           C  K       V  +     +    +   V ++NG L F +V     G YTC        
Sbjct: 268 CDTKQQGM-TKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFN 326

Query: 138 QGSSGQMEVLVRKPPA 153
              +  +E+ V     
Sbjct: 327 --ETLSVELKVYNFTL 340

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 1/45 (2%)

Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
               V  ++G L    V  +D G+Y C         +     L V
Sbjct: 292 SNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFN-ETLSVELKV 335

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
            C I+       VTW    R LE   ++   +        L    + +   G Y C   N
Sbjct: 22  VCKIENYDQSTQVTWYFGVRQLEN--SEKYEITYEDGVAILYVKDITKLDDGTYRCKVVN 79

Query: 134 AHGTQGSSGQMEV 146
            +G   S  ++ V
Sbjct: 80  DYGEDSSYAELFV 92

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 165 KVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVALPKN-RVKIV--GGNIT--IEGLRRVD 218
           + G  V   C+    E   + T +TW       L  + + +I    G     ++ + ++D
Sbjct: 14  EEGGHVKYVCKI---ENYDQSTQVTW-YFGVRQLENSEKYEITYEDGVAILYVKDITKLD 69

Query: 219 FGYYECVVSNEVATIVQAAQLVVEGTQ 245
            G Y C V N+       A+L V+G +
Sbjct: 70  DGTYRCKVVNDYGEDSSYAELFVKGVR 96

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
          +  I  +     L +  +   D G Y C+V N  GE   + A L V+
Sbjct: 48 KYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDS-SYAELFVK 93

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 49.8 bits (119), Expect = 5e-08
 Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 10/102 (9%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
            P  +T  A T  +V L W P          +Y++       K          G  ++ +
Sbjct: 11  PPRALTLAAVTPRTVHLTWQP-----SAGATHYLVRCSPASPKGEEEEREVQVGRPEVLL 65

Query: 307 NRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
           + L P   YE  V              +  +T       P +
Sbjct: 66  DGLEPGRDYEVSVQSLRGPEGSEARG-IRART---PTSGPSS 103

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 17/115 (14%), Positives = 26/115 (22%), Gaps = 30/115 (26%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
             PPR +++  V      ++WQP                                   YL
Sbjct: 9   LPPPRALTLAAVTPRTVHLTWQPS-----------------------------AGATHYL 39

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
                   K          G  ++ ++ L P   YE  V             I  
Sbjct: 40  VRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRA 94

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 9/122 (7%)

Query: 236 AAQLVVEGTQPHAPYN--ITGVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWL 292
            A +     +P  P    I  +  E +V L W  P   GG  +  NY I  RE     W 
Sbjct: 1   GAMVADVP-EPEPPRFPIIENILDE-AVILSWKPPALDGGSLV-TNYTIEKREAMGGSWS 57

Query: 293 PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTKGPKPGPPRNVSV 351
           P   +    T  TI  L     YEF+++ +N+ G          V   G +    R   V
Sbjct: 58  PCAKSR--YTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDV 115

Query: 352 TE 353
            E
Sbjct: 116 DE 117

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 29/109 (26%)

Query: 341 PKPGPPRNVSVTEVN-NGFVISW-QPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN 398
           P+P PPR   +  +     ++SW  P L+  SL+  Y I                     
Sbjct: 8   PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTI--------------------- 46

Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG 447
               E RE     W P   +    T  TI  L     YEF+++ +N+ G
Sbjct: 47  ----EKREAMGGSWSPCAKSR--YTYTTIEGLRAGKQYEFRIIAENKHG 89

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 40.6 bits (95), Expect = 9e-04
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 8/97 (8%)

Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--G 206
              P F +KP    +   G+S + +C       +  P +TW + D       +      G
Sbjct: 480 EAQPRFIVKPYGT-EVGEGQSANFYCRV---IASSPPVVTWHKDDRELKQSVKYMKRYNG 535

Query: 207 GNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
            +    I  ++  D G Y     N   T  +   L V
Sbjct: 536 NDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 14/100 (14%), Positives = 27/100 (27%), Gaps = 11/100 (11%)

Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIV--- 205
           + P    + ++      G             G   P   W  ++GV + ++ R+      
Sbjct: 4   EAPKIFERIQSQ-TVGQGSDAHFRVRVV---GKPDPECEW-YKNGVKIERSDRIYWYWPE 58

Query: 206 GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
                  I  +   D         N        A L+V+ 
Sbjct: 59  DNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 3/72 (4%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNA 134
           +  +   P  +   W K+   +E          ++    L+   V             N 
Sbjct: 26  RVRVVGKPDPE-CEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINI 84

Query: 135 HGTQGSSGQMEV 146
            G   S   + V
Sbjct: 85  AGETSSHAFLLV 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 11 RVVIKKDG--TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
               +D    LVI  V  +DS   M +  N  GE  ++ A+L V+
Sbjct: 53 YWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGE-TSSHAFLLVQ 97

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 19/115 (16%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKV--GESVDMHCEAQEAEGTQKPTITWQRRDGVA 196
           GSSG          ++ + P           E V + CE           + W  +DG  
Sbjct: 1   GSSG---SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL----CRPWAEVRW-TKDGEE 52

Query: 197 LPKN-RVKIV--GGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
           + ++  + +        + +  ++  D G Y C + +E A+      + V     
Sbjct: 53  VVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESAS----FTVTVTEPPV 103

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 15/112 (13%)

Query: 52  NVEFPAKVTFTPTVQYLPFRLQGVV--QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM 109
             +  + + +     Y+       V   C +   P  + V WTKD   +    +  +++ 
Sbjct: 7   GTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAE-VRWTKDGEEVVE--SPALLLQ 62

Query: 110 QNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKP 158
           +      L+   V     G Y C   +       S    V V +PP   I  
Sbjct: 63  KEDTVRRLVLPAVQLEDSGEYLCEIDDE------SASFTVTVTEPPVRIIYS 108

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 11  RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
            ++++K+     LV+  V  +DSG Y+CE+ +     ++A   + V  P  V    +  
Sbjct: 58  ALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD-----ESASFTVTVTEPP-VRIIYSGP 110

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 51.7 bits (124), Expect = 5e-08
 Identities = 22/155 (14%), Positives = 40/155 (25%), Gaps = 11/155 (7%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
            C    N          +  L    + K    +         +N    G+Y+C       
Sbjct: 24  CCQ--GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL 81

Query: 137 TQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
               S  ++++V      P  ++ P        GE V  +C       T        +  
Sbjct: 82  WSEPSNLLDLVVTEMYDTPTLSVHPGPEVIS--GEKVTFYCRLD----TATSMFLLLKEG 135

Query: 194 GVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSN 228
             +  +     V     +  +     G Y C  S 
Sbjct: 136 RSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSY 170

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 23/117 (19%)

Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
           G+ GSSG           FT +   + Q +   +    C+ +        T+TW R+  +
Sbjct: 1   GSSGSSG--------ANCFTEELTNL-QVEEKGTAVFTCKTEHP----AATVTW-RKGLL 46

Query: 196 AL-PKNRVKIV--GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH 247
            L    + +    G  +   I  L + D   Y C +    +     AQL+V+G +  
Sbjct: 47  ELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQAQSR----AQLLVQGRRSG 99

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B* Length = 223

 Score = 51.7 bits (123), Expect = 8e-08
 Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 25/133 (18%)

Query: 310 TPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN--NGFVISWQPPLE 367
           T       +     ++G+  L+   +  T   KP  P ++SV      N FV+++     
Sbjct: 80  TKKFLLIGKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHL 139

Query: 368 RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITI 427
           +   +   ++ +             +          YR++ +++             +  
Sbjct: 140 QKKYV--KVLMH------------DVA---------YRQEKDENKWTHVNLSSTKLTLLQ 176

Query: 428 NRLTPATTYEFQV 440
            +L PA  YE +V
Sbjct: 177 RKLQPAAMYEIKV 189

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B* Length = 223

 Score = 46.7 bits (110), Expect = 4e-06
 Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 5/104 (4%)

Query: 221 YYECVVSNEVATIVQAAQLVV--EGTQPHAPYNITGVATE--FSVTLEWLPGYSGGPDLK 276
             +  +  +V       + +      +P AP++++ V  E      + +   +     +K
Sbjct: 86  IGKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVK 145

Query: 277 Q-NYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV 319
              + + YR++ +++             +   +L PA  YE +V
Sbjct: 146 VLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKV 189

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 21/110 (19%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL- 197
           GSSG        P  FT   +   +   G +  + CE      ++   + W ++    L 
Sbjct: 1   GSSGSSG-----PARFTQDLKTK-EASEGATATLQCEL-----SKVAPVEW-KKGPETLR 48

Query: 198 PKNRVKIV--GGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
              R  +   G    + I  L   D G Y C+   E  +    A L V  
Sbjct: 49  DGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTS----ATLTVRA 94

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 14/85 (16%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
           QC +        V W K    L         + Q+G    L    ++    G Y+C    
Sbjct: 29  QCELSKVAP---VEWKKGPETLRD--GGRYSLKQDGTRCELQIHDLSVADAGEYSCMC-- 81

Query: 134 AHGTQGSSGQMEVLVRKPPAFTIKP 158
             G + +S    + VR  PA   + 
Sbjct: 82  --GQERTSA--TLTVRALPARFTEG 102

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 24/113 (21%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
           GSSG        P       E   Q  VG+ V+M  E       +   + W  ++GV L 
Sbjct: 1   GSSGSSG-----PVLIVTPLEDQ-QVFVGDRVEMAVEV----SEEGAQVMW-MKNGVELT 49

Query: 199 KNRVKIVGGNITIEGLRRV---------DFGYYECVVSNEVATIVQAAQLVVE 242
           +            +G R +         D G Y+ + +         A+L+VE
Sbjct: 50  REDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCE----AELIVE 98

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 8/51 (15%)

Query: 7  SLETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
          S + R   KKDG    L+ + V  +D G Y    + G       +A L VE
Sbjct: 53 SFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGG-----QCEAELIVE 98

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 52/264 (19%), Positives = 78/264 (29%), Gaps = 45/264 (17%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
           +CH      F      K+ R+  P        +   S   + V   H G YTC   + H 
Sbjct: 44  RCH--YRHRFNNFMLYKEDRIHIPIFHG---RIFQESFNMSPVTTAHAGNYTCRGSHPHS 98

Query: 137 TQGSSGQMEVL------VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ 190
             G S     +        + P+    P  + +   GE V + C +              
Sbjct: 99  PTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKS--GERVILQCWSD----IMFEHFFLH 152

Query: 191 RRDGVALPKNRVKIVGG-----NITIEGLRRVDFGYYECVVSNEVATIVQAA-----QLV 240
           +      P   V  +       N +I  +     G Y C  S        +A      +V
Sbjct: 153 KEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIV 212

Query: 241 VEGTQPHAPYNITG-----VATEFSVTLEWLPGYSGGPDLKQNYVIWYRE-QGNKDWLPI 294
           V  T P+   +++      V    SVTL      S             RE   ++  LP 
Sbjct: 213 V--TGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYDM------YHLSREGGAHERRLPA 264

Query: 295 PVTPPGSTQITINRLTPAT---TY 315
                 + Q     L PAT   TY
Sbjct: 265 VRKVNRTFQADF-PLGPATHGGTY 287

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 22/176 (12%)

Query: 19  TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVV-- 76
           +  ++PV +  +G Y C  S+       +     V     VT       L      +V  
Sbjct: 75  SFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVI--MVTGNHRKPSLLAHPGPLVKS 132

Query: 77  ------QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT--RVNQNHQGRYT 128
                 QC       F++    K+    +P +    +        F+   +     G Y 
Sbjct: 133 GERVILQCWSDIM--FEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYR 190

Query: 129 CTPYNAHGTQGSSGQ---MEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQE 178
           C     H     S     ++++V      P+ + +P    Q   GESV + C ++ 
Sbjct: 191 CYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQ--AGESVTLSCSSRS 244

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 22/114 (19%), Positives = 33/114 (28%), Gaps = 15/114 (13%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL- 197
           GSSG   ++  +        E +   + G S    C            + W   D   L 
Sbjct: 1   GSSGSSGLVQGRRVHIIEDLEDV-DVQEGSSATFRCRIS---PANYEPVHW-FLDKTPLH 55

Query: 198 PKNRVKIV---GGNI--TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
                +I    GG    T+  L   D G       ++ A+    A L V     
Sbjct: 56  ANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQRAS----AALRVTEKPS 105

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 8/84 (9%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNA 134
           +C I        V W  DK  L   +  +I     G   L   ++     G         
Sbjct: 34  RCRISPANYEP-VHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA--- 89

Query: 135 HGTQGSSGQMEVLVRKPPAFTIKP 158
            G Q +S  + V   KP  F+   
Sbjct: 90  -GDQRASAALRVTE-KPSVFSRSG 111

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 23/123 (18%), Positives = 36/123 (29%), Gaps = 12/123 (9%)

Query: 128 TC-TPYNAHGTQ----GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT 182
           TC TP    G +               +      +         G +V   C A   +G 
Sbjct: 356 TCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRA---DGD 412

Query: 183 QKPTITWQRRDGVALP---KNRVKIVG-GNITIEGLRRVDFGYYECVVSNEVATIVQAAQ 238
             P I W       +      R+ +   G + +   +  D G Y C+ +N        A 
Sbjct: 413 PPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAH 472

Query: 239 LVV 241
           L V
Sbjct: 473 LHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 2/89 (2%)

Query: 50  YLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD-IVV 108
           Y                ++         C    +P    + W   ++ L   ++   + V
Sbjct: 379 YFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPA-ILWLSPRKHLVSAKSNGRLTV 437

Query: 109 MQNGSLLFTRVNQNHQGRYTCTPYNAHGT 137
             +G+L          G Y C   NA G 
Sbjct: 438 FPDGTLEVRYAQVQDNGTYLCIAANAGGN 466

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 9   ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
             R+ +  DGTL +      D+G Y+C  +N  G   +  A+L+V
Sbjct: 432 NGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGN-DSMPAHLHV 475

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 23/115 (20%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL- 197
           GSSG            T + E       GE V++ CE  E +      + W  ++G  + 
Sbjct: 1   GSSGS------SGIMVTKQLEDT-TAYCGERVELECEVSEDD----ANVKW-FKNGEEII 48

Query: 198 --PKNRVKIVG-GNI---TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
             PK+R +I   G      IEG  + D   Y  + +   ++    A+L V+    
Sbjct: 49  PGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSS----AKLSVDLKSG 99

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 8/51 (15%)

Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK 58
          R  I+ +G    L+I      D+  Y    + G      + A L+V+  + 
Sbjct: 54 RYRIRVEGKKHILIIEGATKADAAEYSVMTTGG-----QSSAKLSVDLKSG 99

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 89  VTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145
           V W K+   + P       +   G    L+     +     Y+           SS ++ 
Sbjct: 38  VKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQ----SSAKLS 93

Query: 146 VLVRKPPA 153
           V ++  P+
Sbjct: 94  VDLKSGPS 101

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 16/117 (13%)

Query: 244 TQPHAPYNITGV--ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLP-------- 293
           T P+ P     +  A+  ++T+ W+           +Y + Y     +            
Sbjct: 14  TAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFISLYNSVDS 70

Query: 294 -IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRN 348
            + V        T++ L   T Y F V   N+ G    S    +KT   P    P +
Sbjct: 71  WMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSR-NSEPTRLKTNSQPFKSGPSS 126

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 47.6 bits (113), Expect = 5e-07
 Identities = 20/122 (16%), Positives = 32/122 (26%), Gaps = 21/122 (17%)

Query: 341 PKPGPPR-NVSVTEV-NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN 398
             P PP     +    ++   + W         I  Y ++Y                   
Sbjct: 14  TAPNPPSIREELCTASHDTITVHWISD--DEFSISSYELQYTIFTG-------------- 57

Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 458
                        W+ +P         T++ L   T Y F V   N+ G    S    +K
Sbjct: 58  QANFISLYNSVDSWMIVPNIK--QNHYTVHGLQSGTRYIFIVKAINQAGSR-NSEPTRLK 114

Query: 459 TK 460
           T 
Sbjct: 115 TN 116

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 47.8 bits (113), Expect = 4e-07
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 17/103 (16%)

Query: 155 TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR--------------RDGVALPKN 200
            + P    +  VGE + ++C A          I +                RD      +
Sbjct: 11  VLSPSHGIELSVGEKLVLNCTA---RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67

Query: 201 RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
            +K     +TI+G+ R D G Y C  S+ + T   +  + V  
Sbjct: 68  EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 110

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQ 66
             + K   TL I+ V   D GLY C  S+G+   +    ++ V     V F   ++
Sbjct: 67  SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEKPFVAFGSGME 121

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 21/113 (18%), Positives = 33/113 (29%), Gaps = 21/113 (18%)

Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
           G+ GSSG            T + + M +   GES    C    +  +      W    G 
Sbjct: 1   GSSGSSG--------HVGITKRLKTM-EVLEGESCSFECVL--SHESASDPAMW-TVGGK 48

Query: 196 AL-PKNRVKIVG-GNI---TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
            +   +R +    G      +      D G     V    +     A L+V  
Sbjct: 49  TVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSK----ASLIVRE 97

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 10/80 (12%), Positives = 21/80 (26%), Gaps = 9/80 (11%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
           +C +          WT   + +    +      + G    L+      +  G    +   
Sbjct: 29  ECVLSHESASDPAMWTVGGKTVGS--SSRFQATRQGRKYILVVREAAPSDAGEVVFSV-- 84

Query: 134 AHGTQGSSGQMEVLVRKPPA 153
                 S   + V  R  P+
Sbjct: 85  --RGLTSKASLIVRERSGPS 102

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 8/51 (15%)

Query: 11  RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK 58
           R    + G    LV+      D+G  +  V         ++A L V   + 
Sbjct: 55  RFQATRQGRKYILVVREAAPSDAGEVVFSVRG-----LTSKASLIVRERSG 100

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 15/98 (15%)

Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIVG-G 207
                      + +  VGE+     E  E +        W +  G  L      +I+  G
Sbjct: 4   ALIEVEKPLYGV-EVFVGETAHFEIELSEPD----VHGQW-KLKGQPLAASPDCEIIEDG 57

Query: 208 NI---TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
                 +   +    G      +N  +     A L V+
Sbjct: 58  KKHILILHNCQLGMTGEVSFQAANTKSA----ANLKVK 91

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 8/47 (17%)

Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
             I +DG    L+++      +G    + +N       + A L V+
Sbjct: 50 DCEIIEDGKKHILILHNCQLGMTGEVSFQAAN-----TKSAANLKVK 91

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 21/119 (17%)

Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
           G+ GSSG                  +   K  E     CE       +K T  W  ++GV
Sbjct: 1   GSSGSSG--------QLEVLQDIADL-TVKAAEQAVFKCEV----SDEKVTGKW-YKNGV 46

Query: 196 AL-PKNRVKIVGGN----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
            + P  R+ I        + I+ +R  D G Y  V      ++  +A+L     +   P
Sbjct: 47  EVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSL--SAKLNFLEIKVSGP 103

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 7/53 (13%)

Query: 11  RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT 60
           R+ I   G    LVI+ V  +D G Y               A LN     KV+
Sbjct: 53  RITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALS---LSAKLNFL-EIKVS 101

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 11/75 (14%)

Query: 89  VTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME 145
             W K+   + P  +K I +   G    L+   V    +G YT  P     +   S ++ 
Sbjct: 39  GKWYKNGVEVRP--SKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLN 94

Query: 146 VLVRKPPAFTIKPEA 160
            L          P +
Sbjct: 95  FL----EIKVSGPSS 105

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 49.6 bits (118), Expect = 6e-07
 Identities = 26/192 (13%), Positives = 53/192 (27%), Gaps = 17/192 (8%)

Query: 19  TLVINPVGSDDSGLYMCEVSNGIGEPQAAQA----YLNVEFPAKVTFTPTVQYLPFRLQG 74
              I P+  D +G Y C  S      Q +       + +         P++   P     
Sbjct: 63  NFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGL---YEKPSLSAQPGPTVL 119

Query: 75  V-----VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTC 129
                 + C  +++  +     +++    E   +    V       F      H G Y C
Sbjct: 120 AGESVTLSCSSRSS--YDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRC 177

Query: 130 TPYNAHGTQGSSGQ---MEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT 186
                      S     + V V   P+ +         + G    +H  A++   +++  
Sbjct: 178 FGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEEDL 237

Query: 187 ITWQRRDGVALP 198
                  G +  
Sbjct: 238 NLDLVPRGSSSH 249

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 20/155 (12%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
           +C     P        K        Q           L    + ++  GRY C+  N   
Sbjct: 28  RCQ--GPPGVDLYRLEKLSSSRYQDQ---------AVLFIPAMKRSLAGRYRCSYQNGSL 76

Query: 137 TQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
               S Q+E++       P+ + +P        G  V + C+ +             +  
Sbjct: 77  WSLPSDQLELVATGVFAKPSLSAQPGPAVSS--GGDVTLQCQTRY----GFDQFALYKEG 130

Query: 194 GVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSN 228
             A  KN  +    +  I  +     G Y C   +
Sbjct: 131 DPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFS 165

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 15/97 (15%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-PKNRVKIV--GG 207
             AF+ KP ++ +   G       E + A       + W +R G  +   N+  +   G 
Sbjct: 8   VSAFSKKPRSV-EVAAGSPAVFEAETERAG----VKVRW-QRGGSDISASNKYGLATEGT 61

Query: 208 N--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
              +T+  +   D G Y  +  +          L V 
Sbjct: 62  RHTLTVREVGPADQGSYAVIAGSSKVK----FDLKVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 8/47 (17%)

Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
          +  +  +G   TL +  VG  D G Y     +        +  L V 
Sbjct: 53 KYGLATEGTRHTLTVREVGPADQGSYAVIAGS-----SKVKFDLKVI 94

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 48.7 bits (115), Expect = 7e-07
 Identities = 27/183 (14%), Positives = 56/183 (30%), Gaps = 41/183 (22%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
            + C + ++     + W K+ + L     K +V+       F+ V  +  G Y C    +
Sbjct: 18  ELTCPLDSDEN---LKWEKNGQELPQKHDKHLVLQD-----FSEVEDS--GYYVCYTPAS 67

Query: 135 HGT--------------QGSSGQMEVLVRKPPAFTIKPEA--------MYQRKVGESVDM 172
           +                       +   +K  A     +         +   +   SV +
Sbjct: 68  NKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLL 127

Query: 173 HCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT 232
            C      G    TI W + DG  +  + +        +    +   G Y+C  + E + 
Sbjct: 128 TC------GLTDKTIKWLK-DGSII--SPLNATKNTWNLGNNAKDPRGTYQCQGAKETSN 178

Query: 233 IVQ 235
            +Q
Sbjct: 179 PLQ 181

>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 46.5 bits (110), Expect = 8e-07
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 27/107 (25%)

Query: 342 KPGPPRNVSVTEVNNG---FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN 398
           KP PP NV    V +      ++WQ P       + + +K+             +R    
Sbjct: 7   KPDPPENVVARPVPSNPRRLEVTWQTP-STWPDPESFPLKF------------FLR---- 49

Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE 445
                YR      W  + ++    T  TI        Y  QV  K+ 
Sbjct: 50  -----YRPLILDQWQHVELSN--GTAHTITDAYAGKEYIIQVAAKDN 89

>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 7/85 (8%)

Query: 245 QPHAPYNITGVATE---FSVTLEWLPGYSGGPD--LKQNYVIWYREQGNKDWLPIPVTPP 299
           +P  P N+           + + W    +          + + YR      W  + ++  
Sbjct: 7   KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSN- 65

Query: 300 GSTQITINRLTPATTYEFQVVGKNE 324
             T  TI        Y  QV  K+ 
Sbjct: 66  -GTAHTITDAYAGKEYIIQVAAKDN 89

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 20/113 (17%)

Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV 195
           G+ GSSG++    ++ PA         Q + G S  + CE  +A+      +TW  +DG 
Sbjct: 1   GSSGSSGKVVF-AKEQPAHR-----EVQAEAGASATLSCEVAQAQ----TEVTW-YKDGK 49

Query: 196 AL-PKNRVKIV--GGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
            L   ++V++   G    + ++   + + G Y C    +  +     +L V G
Sbjct: 50  KLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLS----FRLQVAG 98

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 8/47 (17%)

Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
          +V ++  G    LV+   G  ++G Y CE        Q     L V 
Sbjct: 56 KVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG-----QQLSFRLQVA 97

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 31/116 (26%), Positives = 42/116 (36%), Gaps = 21/116 (18%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
           GSSG        P A     E       GE V++ CE         P + W  +D  A+ 
Sbjct: 1   GSSGSSG-----PAAIIKPLEDQ-WVAPGEDVELRCEL---SRAGTP-VHW-LKDRKAIR 49

Query: 199 KN-RVKIVGGN----ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
           K+ +  +V       + I G    D G Y C V    +T    A L VE  +   P
Sbjct: 50  KSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKST----ASLHVEE-KASGP 100

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 8/47 (17%)

Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
          +  +  +G    LVI      D+G Y CEV           A L+VE
Sbjct: 53 KYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKST-----ASLHVE 94

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 37.7 bits (88), Expect = 9e-04
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 13/80 (16%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
           +C +    T   V W KD++ +    ++   V+  G    L+    +    G YTC    
Sbjct: 29  RCELSRAGT--PVHWLKDRKAIRK--SQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA 84

Query: 134 AHGTQGSSGQMEVLVRKPPA 153
           +  T        + V +  +
Sbjct: 85  SKST------ASLHVEEKAS 98

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 23/116 (19%), Positives = 37/116 (31%), Gaps = 21/116 (18%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL- 197
           GSSG        P  F    + + +   G +  + C            + W       L 
Sbjct: 1   GSSGS-----SGPVRFQEALKDL-EVLEGGAATLRCVLSSVA----APVKW-CYGNNVLR 49

Query: 198 PKNRVKIV--GGNIT--IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
           P ++  +   G  +   +  LR  D G Y C   ++  +    A L V    P  P
Sbjct: 50  PGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQTTS----ATLTVTAL-PSGP 100

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 20/109 (18%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL- 197
           GSSG                       +G+ + + CE  E          W  ++G+ + 
Sbjct: 1   GSSGS------SGLKILTPLTDQ-TVNLGKEICLKCEISE-----NIPGKW-TKNGLPVQ 47

Query: 198 PKNRVKIV--GGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
             +R+K+V  G    + I      D G Y         T+   A++ V 
Sbjct: 48  ESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTL--PAKVHVI 94

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 12/80 (15%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN 133
           +C I  N       WTK+   ++   +  + V+Q G    L+        +G Y   P  
Sbjct: 28  KCEISENIP---GKWTKNGLPVQE--SDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA 82

Query: 134 AHGTQGSSGQMEVLVRKPPA 153
            + T     ++ V+    P+
Sbjct: 83  YNVT--LPAKVHVIS--GPS 98

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 6/49 (12%)

Query: 11 RVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP 56
          R+ + + G    LVI    ++D G Y+              A ++V   
Sbjct: 51 RLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVT---LPAKVHVISG 96

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 16/140 (11%)

Query: 10  TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF-TPTVQYL 68
           T   I  + ++VI  +   D G Y C V     +    +    V    K  F TP++   
Sbjct: 57  TIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF 116

Query: 69  PFRLQGVVQCHIKAN-----PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT-----R 118
                 + +     +     P    ++W ++   L    T      +    L+       
Sbjct: 117 EIPTSNIRRIICSTSGGFPEPH---LSWLENGEELNAINTTVSQDPETE--LYAVSSKLD 171

Query: 119 VNQNHQGRYTCTPYNAHGTQ 138
            N      + C     H   
Sbjct: 172 FNMTTNHSFMCLIKYGHLRV 191

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 18/162 (11%), Positives = 43/162 (26%), Gaps = 23/162 (14%)

Query: 88  YVTWTKDKRLLEPYQTKDIVVMQ------------NGSLLFTRVNQNHQGRYTCTPYNAH 135
            + W K+K+++    + D+ +              N S++   +  + +G Y C      
Sbjct: 29  RIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYE 88

Query: 136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQR-KVGESVDMHCEAQEAEGTQKPTITWQRRDG 194
                   +  +     A    P              + C      G  +P ++W   +G
Sbjct: 89  KDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTS--GGFPEPHLSW-LENG 145

Query: 195 VALPKNRVKIV----GGNITIEG---LRRVDFGYYECVVSNE 229
             L      +          +             + C++   
Sbjct: 146 EELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYG 187

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 15/111 (13%)

Query: 60  TFTPTVQYL--PFRLQGV-VQCHIKANPTFQYVTWTKDKRLLEP--------YQTKDIVV 108
           +  P    L     +    +   +   P    + W  +  +L           +      
Sbjct: 1   SHMPASVQLHTAVEMHHWCIPFSVDGQPAPS-LRWLFNGSVLNETSFIFTEFLEPAANET 59

Query: 109 MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE 159
           +++G L   +    + G YT    N  G   +S  +       P F   PE
Sbjct: 60  VRHGCLRLNQPTHVNNGNYTLLAANPFGQ--ASASIMAAFMDNP-FEFNPE 107

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 18/127 (14%), Positives = 32/127 (25%), Gaps = 24/127 (18%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR--------- 201
            PA         Q      +   C     +G   P++ W   +G  L +           
Sbjct: 3   MPASV-------QLHTAVEMHHWCIPFSVDGQPAPSLRWLF-NGSVLNETSFIFTEFLEP 54

Query: 202 ---VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG----TQPHAPYNITG 254
                +  G + +     V+ G Y  + +N       +             P  P   T 
Sbjct: 55  AANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTN 114

Query: 255 VATEFSV 261
             +   V
Sbjct: 115 STSGDPV 121

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 23/162 (14%), Positives = 43/162 (26%), Gaps = 19/162 (11%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
           +C        Q     K+           +            + ++H GRY C  Y+  G
Sbjct: 25  RCQ--GTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAG 82

Query: 137 TQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
               S  +E++V      P  +  P  +     GE+V + C ++               +
Sbjct: 83  WSEPSDPLELVVTGFYNKPTLSALPSPVVTS--GENVTLQCGSRLRFDR-----FILTEE 135

Query: 194 GVALP---KNRVKIVGGNI----TIEGLRRVDFGYYECVVSN 228
           G        +      G       +  +         C  S 
Sbjct: 136 GDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSR 177

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 10/130 (7%)

Query: 19  TLVINPVGSDDSGLYMCEVSNGIGEPQ---AAQAYLNVEFPAKVTFTPTVQYLPFRLQGV 75
              I  +    +G Y C   +  G  +     +  +   +            +       
Sbjct: 59  RFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVT 118

Query: 76  VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS----LLFTRVNQNHQGRYTCTP 131
           +QC  +    F     T++    +   T D  +  +G          V  +H+    C  
Sbjct: 119 LQCGSRLR--FDRFILTEEGDH-KLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYG 175

Query: 132 YNAHGTQGSS 141
              H  Q  S
Sbjct: 176 SRRHILQVWS 185

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 18/161 (11%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG 136
            C        +     K++      +   +            + +++ GRY C   +  G
Sbjct: 25  WCQ--GTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVG 82

Query: 137 TQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD 193
               S  +E+++      P  +  P  +     G+SV + C+++    +   T     ++
Sbjct: 83  WSQPSDPLELVMTGAYSKPTLSALPSPLVT--SGKSVTLLCQSR----SPMDTFLLC-KE 135

Query: 194 GVALPKNRVKIVGGNI------TIEGLRRVDFGYYECVVSN 228
             A P   ++   G         +  +  V  G Y C  S+
Sbjct: 136 RAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSH 176

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 46.6 bits (110), Expect = 5e-06
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 18/137 (13%)

Query: 19  TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGV-VQ 77
            L I+ V + DSG Y+C   +G       +A + ++  A  +    V    ++  G+ ++
Sbjct: 84  ALRIHNVTASDSGKYLCYFQDGDFY---EKALVELKVAALGS-DLHVDVKGYKDGGIHLE 139

Query: 78  CHIKAN---PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT-----RVNQNHQGRYTC 129
           C        P    + W+ +K    P       V+ +G  L+       +  +     +C
Sbjct: 140 CRSTGWYPQPQ---IQWSNNKGENIPTVEA--PVVADGVGLYAVAASVIMRGSSGEGVSC 194

Query: 130 TPYNAHGTQGSSGQMEV 146
           T  ++      +  + +
Sbjct: 195 TIRSSLLGLEKTASISI 211

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 45.9 bits (108), Expect = 8e-06
 Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 13/133 (9%)

Query: 104 KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQ 163
           +D +     +L    V  +  G+Y C     +   G   +  ++  K  A         +
Sbjct: 75  RDGITAGKAALRIHNVTASDSGKYLC-----YFQDGDFYEKALVELKVAALGSDLHVDVK 129

Query: 164 RKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV---GGNITIEG---LRRV 217
                 + + C +       +P I W    G  +P     +V    G   +     +R  
Sbjct: 130 GYKDGGIHLECRS--TGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGS 187

Query: 218 DFGYYECVVSNEV 230
                 C + + +
Sbjct: 188 SGEGVSCTIRSSL 200

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 43.2 bits (101), Expect = 7e-05
 Identities = 27/179 (15%), Positives = 44/179 (24%), Gaps = 48/179 (26%)

Query: 140 SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR-------- 191
           +  Q  VL          P       VGE  D+ C        +   + W          
Sbjct: 1   ADLQFSVLG---------PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVN 51

Query: 192 --RDGVALP-------KNRVKIVGGN-------ITIEGLRRVDFGYYECVVSNEVATIVQ 235
              DG  +        + R  I+          + I  +   D G Y C   +      +
Sbjct: 52  VYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFY-EK 110

Query: 236 AAQLVVEGTQPHAPYNITGVATEFSVTLE-----WLPGYSGGPDLKQNYVIWYREQGNK 289
           A   +         +       +  + LE     W P         Q  + W   +G  
Sbjct: 111 ALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYP---------QPQIQWSNNKGEN 160

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 12/108 (11%), Positives = 25/108 (23%), Gaps = 21/108 (19%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
                 +SVT+V  +   ++W+ P         +L+++                      
Sbjct: 9   RPRLSQLSVTDVTTSSLRLNWEAPPGA---FDSFLLRFGVPSP----------------- 48

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
                          + P       +  L   T Y   + G       
Sbjct: 49  STLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKA 96

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 15/97 (15%), Positives = 23/97 (23%), Gaps = 12/97 (12%)

Query: 256 ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT--------PPGSTQITIN 307
            T  S+ L W       P    ++++ +         P P          P       + 
Sbjct: 20  VTTSSLRLNWEAP----PGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLR 75

Query: 308 RLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPG 344
            L   T Y   + G                  GP  G
Sbjct: 76  DLRSGTLYSLTLYGLRGPHKADSIQGTARTLSGPSSG 112

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 20/138 (14%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV----EFPAKVTFTPTVQ 66
              +   G LV+      D   Y+C V  G      A A LNV    E         T+ 
Sbjct: 70  PYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLS 129

Query: 67  YLPFRLQGVVQCHIK-ANPTFQYVTWTKDKRLLEP--------YQTKDIVVMQNG----- 112
            +    Q +  C+ +  NP  + +TW ++ + LE         Y T   V   +G     
Sbjct: 130 VMEDSAQEIATCNSRNGNPAPK-ITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT 188

Query: 113 -SLLFTRVNQNHQGRYTC 129
            +L       +    + C
Sbjct: 189 STLYLRLRKDDRDASFHC 206

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 6/142 (4%)

Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGG 207
           ++  P     PE +    +G S  + C    A+     ++ W R    +L   +      
Sbjct: 3   LQVKPLQVEPPEPVVAVALGASRQLTCRLACADRG--ASVQW-RGLDTSLGAVQSDTGRS 59

Query: 208 NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLP 267
            +T+        G   CV S    T     QL+V         +   +       +    
Sbjct: 60  VLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPG-DPEVACTA 118

Query: 268 GYSGGPDLKQNYVIWYREQGNK 289
                  +  N + +    G +
Sbjct: 119 --HKVTPVDPNALSFSLLVGGQ 138

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 19/120 (15%), Positives = 34/120 (28%), Gaps = 9/120 (7%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
            + C +        V W      L   Q+          L     + +  G   C     
Sbjct: 26  QLTCRLACADRGASVQWRGLDTSLGAVQSDT----GRSVLTVRNASLSAAGTRVCVGSCG 81

Query: 135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG 194
             T   + Q+ V    P   T+ P A+    V    ++ C A +        +++    G
Sbjct: 82  GRTFQHTVQLLVY-AFPNQLTVSPAAL----VPGDPEVACTAHKVTPVDPNALSFSLLVG 136

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 46.3 bits (108), Expect = 2e-05
 Identities = 14/114 (12%), Positives = 31/114 (27%), Gaps = 4/114 (3%)

Query: 73  QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT-- 130
            G  +           V W     +L+  ++    +M   +LL   +++   G Y C   
Sbjct: 548 GGTAELKCSQKSNLARVFWKFQNGVLKA-ESPKYGLMGRKNLLIFNLSEGDSGVYQCLSE 606

Query: 131 -PYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ 183
                        +  + V+  P   + P     +  G  +         +   
Sbjct: 607 ERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTKHHH 660

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 17/128 (13%), Positives = 31/128 (24%), Gaps = 8/128 (6%)

Query: 110 QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS--SGQMEVLVRKP-PAFTIKPEAMYQRKV 166
           +N SL          G Y          + S    ++ + V        I      +   
Sbjct: 80  KNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLE--S 137

Query: 167 GESVDMHCEAQ-EAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECV 225
           G    + C      E     T +W        P +        +T+            C 
Sbjct: 138 GRPTRLSCSLPGSCEAGPPLTFSWTGNAL--SPLDPETTRSSELTLTPRPEDHGTNLTCQ 195

Query: 226 VSNEVATI 233
           +  + A +
Sbjct: 196 MKRQGAQV 203

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 7/131 (5%)

Query: 15  KKDGTLVINPVGSDDSGLYMCEVSNGIGE---PQAAQAYLNVEFPAKVTFTPTVQYLPFR 71
           KK+ +L I     +D+G Y   V  G       Q  +  L V    +      ++ L   
Sbjct: 79  KKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESG 138

Query: 72  LQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCT 130
               + C +  +      +T++     L P   +     ++  L  T   ++H    TC 
Sbjct: 139 RPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE---TTRSSELTLTPRPEDHGTNLTCQ 195

Query: 131 PYNAHGTQGSS 141
                    + 
Sbjct: 196 MKRQGAQVTTE 206

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 2   NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
           N      +   +++    L +  V     G Y C +SN  G   +  A L +
Sbjct: 60  NYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 19/105 (18%)

Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ-RRDGVALPK----------- 199
           P  T++PE       G  V   C A     +    +T+    D  AL             
Sbjct: 11  PQITVQPETQ-SAIXGSDVSFTCSA---ASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66

Query: 200 --NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVV 241
               +      + +  +     G Y+CV+SN   +     A L +
Sbjct: 67  QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 15/106 (14%), Positives = 42/106 (39%), Gaps = 18/106 (16%)

Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG--------VALPKNRVK 203
            + T   E +   + G+++ + C        +  ++ W    G          L  ++ +
Sbjct: 2   GSLTNHTETI-TVEEGQTLTLKCVT---SLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQ 57

Query: 204 IV-----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT 244
           ++       +IT+  +   D G Y+C+  ++ +   +  +++V  T
Sbjct: 58  LLHHSANQLSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLAT 102

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 2/48 (4%)

Query: 16  KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP 63
              ++ +  V   D G+Y C   +        +  + V    K  F  
Sbjct: 64  NQLSITVPNVTLQDEGVYKCLHYS--DSVSTKEVKVIVLATMKGEFCR 109

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 41.7 bits (97), Expect = 5e-05
 Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 15/120 (12%)

Query: 139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP 198
           GSSG           F  KP+++   + G+   +  +    E   KPTI W +   + L 
Sbjct: 1   GSSGSSGA-EEPTGVFLKKPDSV-SVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELG 58

Query: 199 KN-------------RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245
                             +    + I  +   D GYY   V  +         + VE  +
Sbjct: 59  SKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 41.5 bits (97), Expect = 9e-05
 Identities = 25/147 (17%), Positives = 43/147 (29%), Gaps = 38/147 (25%)

Query: 140 SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR-------- 191
            SGQ  V+          P    +  VG+  ++ C     +      + W R        
Sbjct: 3   GSGQFRVIG---------PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVH 53

Query: 192 --RDGVALP-------KNRVKIVG-----GN--ITIEGLRRVDFGYYECVVSNEVATIVQ 235
             R+G           + R +++      G   + I+ +R  D G Y C   +       
Sbjct: 54  LYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEA 113

Query: 236 AAQLVVEGTQPHAPYNITGVATEFSVT 262
           A +L V       P+         S  
Sbjct: 114 AVELKV-----EDPFYWINPGRSRSHH 135

>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor); helical bundle, fibronectin type III domain, beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A {Homo sapiens} PDB: 3og4_B* Length = 226

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 32/219 (14%), Positives = 61/219 (27%), Gaps = 46/219 (21%)

Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG-NKDWLPIPVTPPGSTQIT- 305
            P N+T ++  FSV L WLPG     D+   Y + Y+     + W  +            
Sbjct: 8   PPQNVTLLSQNFSVYLTWLPGLGNPQDV--TYFVAYQSSPTRRRWREV----EECAGTKE 61

Query: 306 -------INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGP----KPGPPRNVSVTEV 354
                  + +      ++ +V   +       S  V  +        +P PP  + +T+ 
Sbjct: 62  LLCSMMCLKKQDLYNKFKGRVRTVSP---SSKSPWVESEYLDYLFEVEPAPPV-LVLTQT 117

Query: 355 NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP 414
                 +    L     +    +KY                        + ++G  +   
Sbjct: 118 EEILSANATYQLPPC--MPPLDLKYEV---------------------AFWKEGAGNKTL 154

Query: 415 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
            PVTP G       +   +  +               S 
Sbjct: 155 FPVTPHGQPVQITLQPAASEHHCLSARTIYTFSVPKYSK 193

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 17/89 (19%)

Query: 166 VGESVDMHCEAQEAEGTQKPTITWQRRDG--------VALPKNRVKIVGG-----NITIE 212
            G +  + C     +     ++ W              AL  NR+++V       +I++ 
Sbjct: 20  EGGTAILTCRV---DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVS 76

Query: 213 GLRRVDFGYYECVVSNEVATIVQAAQLVV 241
            +   D G Y C +          A L V
Sbjct: 77  DVSLSDEGQYTCSLFTM-PVKTSKAYLTV 104

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 9/43 (20%), Positives = 15/43 (34%)

Query: 11  RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
           RV       L +  +  +D+G Y C            + +L V
Sbjct: 64  RVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106

>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens} Length = 104

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 8/103 (7%)

Query: 244 TQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           +     +++T V  +  S+TL W    +       NY       G  D   + V+     
Sbjct: 6   SGAIQVFDVTAVNISATSLTLIWKVSDNESS---SNYTYKIHVAGETDSSNLNVS---EP 59

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGP 345
           +  I  L  +T Y   V       +G    + V  T     GP
Sbjct: 60  RAVIPGLRSSTFYNITVCPVLGDIEGTPGFLQVH-TPPVPSGP 101

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 23/159 (14%), Positives = 48/159 (30%), Gaps = 18/159 (11%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA-H 135
           +C        Q     ++K+           +++ G      +   H GRY C   +   
Sbjct: 25  RCQ--GGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTA 82

Query: 136 GTQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR 192
           G   SS  +E++V      P  + +P  +     G +V + C++Q             + 
Sbjct: 83  GRSESSDPLELVVTGAYIKPTLSAQPSPVVN--SGGNVTLQCDSQ----VAFDGFILCKE 136

Query: 193 DGVALPKNRVKIVGG------NITIEGLRRVDFGYYECV 225
                P+                ++  +      +Y C 
Sbjct: 137 GEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCY 175

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1 Length = 88

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 12/95 (12%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P AP N+   A T  S+TL W    +    +   Y + Y             T    T  
Sbjct: 4   PTAPTNLASTAQTTSSITLSWTAS-TDNVGVT-GYDV-YNGTA-------LATTVTGTTA 53

Query: 305 TINRLTPATTYEFQVVGKNELGD-GMLSNIVVVKT 338
           TI+ L   T+Y F V  K+  G+    SN V VKT
Sbjct: 54  TISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 98  LEPYQTKDIVVMQNGSLLFTRVN-QNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTI 156
           LE    ++        L    V+ +  + +  C    A  T  + G +    R P    +
Sbjct: 36  LETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQR-PDRVEL 94

Query: 157 KPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR 191
            P     + VGE+  + C    A      T+T  R
Sbjct: 95  MPLPP-WQPVGENFTLSCRVPGAGPRASLTLTLLR 128

>1fyh_B Interferon-gamma receptor alpha chain; cytokine-receptor complex, fibronectin type-III, immune system; 2.04A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1fg9_C 1jrh_I Length = 229

 Score = 40.1 bits (93), Expect = 7e-04
 Identities = 25/212 (11%), Positives = 58/212 (27%), Gaps = 28/212 (13%)

Query: 242 EGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
             +    P N+T  +   +  + W             + +  +  G K+   I       
Sbjct: 8   GPSSVPTPTNVTIESYNMNPIVYWEY---QIMPQVPVFTVEVKNYGVKNSEWIDA----C 60

Query: 302 TQITINR--LTPAT-----TYEFQVVGKNELGDGMLSNIVVVKTKGP----KPGPPRNVS 350
             I+ +   ++        +   +V  K  +G    S     +        K GPP  + 
Sbjct: 61  INISHHYCNISDHVGDPSNSLWVRV--KARVGQKE-SAYAKSEEFAVCRDGKIGPP-KLD 116

Query: 351 VTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNK 410
           + +     +I    P    +  +  +       +   +    +    N    +Y+    K
Sbjct: 117 IRKEEKQIMIDIFHPSVFVNGDEQEV--DYDPETTCYIRVYNVYVRMNGSEIQYKILTQK 174

Query: 411 DWLPIPVTPPGSTQITINRLTPATTYEFQVVG 442
           +            Q+ I   +  + Y     G
Sbjct: 175 ED----DCDEIQCQLAIPVSSLNSQYCVSAEG 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	460
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.98
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.98
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.98
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.98
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.97
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.97
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.97
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.97
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.97
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.97
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.97
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.97
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.97
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.97
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.97
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.97
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.97
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.96
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.96
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.96
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.96
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.96
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.96
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.96
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.96
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.96
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.96
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.96
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.96
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.96
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.96
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.95
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.95
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.95
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.95
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.95
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.95
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.95
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.95
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.95
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.95
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.95
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.95
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.95
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.94
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.94
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.94
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.94
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.94
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.94
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.94
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.94
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	99.93
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.93
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.93
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.93
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.93
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.93
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.93
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.93
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.92
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.92
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.92
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.92
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.92
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.92
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.92
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.92
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.92
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.92
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.92
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.92
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.91
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.91
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.91
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.91
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.91
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.91
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.91
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.91
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.91
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.91
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.91
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.91
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.9
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.9
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.9
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.9
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.9
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.9
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.9
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.9
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	99.9
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.89
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.89
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.89
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.89
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.89
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.89
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	99.89
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.88
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.88
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.88
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.88
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.88
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.88
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.88
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.88
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.88
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.88
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.88
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.88
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.88
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.88
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.87
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.87
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.87
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.87
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.87
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.87
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.87
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.87
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.87
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.87
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.87
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.87
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.87
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.86
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.86
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.86
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.85
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.85
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.85
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.85
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.85
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.85
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.85
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	99.85
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	99.85
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.85
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.85
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.85
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	99.84
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	99.84
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.84
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.84
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.84
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.83
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.83
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.83
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.83
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.83
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.83
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.83
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.83
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.82
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.82
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.82
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.82
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.82
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.82
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.82
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	99.81
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.81
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.81
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.81
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.81
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.81
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.81
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.81
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.81
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.81
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.81
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.81
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.81
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.8
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.8
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.8
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.8
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	99.8
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.79
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.79
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.79
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.79
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.79
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.79
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.79
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	99.79
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.79
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.79
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.78
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.78
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.78
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.78
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.78
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.77
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.77
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	99.77
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.77
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.77
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.77
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.77
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.77
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.77
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	99.77
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.77
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.77
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.77
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.76
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.76
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.76
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.76
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.76
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.76
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.76
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.76
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.76
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.76
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.75
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.75
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.75
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.75
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.75
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.75
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.75
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.75
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.75
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.75
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.75
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.75
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.74
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.74
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.74
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.74
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.74
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	99.74
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.74
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.74
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.74
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.74
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.74
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.74
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.73
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.73
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.73
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.73
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.73
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.73
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.73
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.73
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.73
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.73
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.73
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.73
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.73
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.73
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.73
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.73
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.72
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.72
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.72
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.72
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.72
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.72
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.72
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.72
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.72
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.72
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.72
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.72
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	99.72
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.72
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.71
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.71
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.71
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	99.71
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.71
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	99.71
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.71
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.71
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.71
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	99.71
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.71
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.7
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.7
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	99.7
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.7
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.7
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.7
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	99.7
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.7
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.7
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.7
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.7
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.7
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.69
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.69
2crm_A	120	Fibronectin type-III domain containing protein 3A;	99.69
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.69
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.69
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.69
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.69
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	99.69
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.69
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.69
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.69
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.69
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	99.68
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.68
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	99.68
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	99.68
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.68
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.68
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.68
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.68
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.68
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.68
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.68
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.68
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.67
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.67
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	99.67
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.67
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.67
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.67
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.67
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.67
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.67
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.67
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.67
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.67
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.67
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	99.67
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	99.66
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.66
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.66
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.66
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.66
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.66
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.66
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.66
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.66
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.66
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	99.66
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	99.65
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	99.65
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.65
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	99.65
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	99.65
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	99.65
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	99.65
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.65
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	99.65
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	99.65
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.65
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.65
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.65
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.65
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.65
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	99.64
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.64
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.64
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.64
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	99.64
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.64
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	99.64
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.64
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.64
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	99.64
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	99.63
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.63
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.63
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.63
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.63
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.63
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.63
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.63
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.63
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.63
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.63
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.62
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.62
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.62
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.62
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.62
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	99.62
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	99.62
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	99.62
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.62
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.62
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.62
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	99.61
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	99.61
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.61
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.61
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	99.61
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.61
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	99.6
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.6
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.6
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.6
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.6
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	99.6
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	99.59
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.59
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.59
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.59
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	99.59
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.59
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.58
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.58
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.58
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.58
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.58
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	99.58
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	99.58
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	99.58
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.57
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.57
2crz_A	110	Fibronectin type-III domain containing protein 3A;	99.57
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	99.57
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.57
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.57
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.57
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.57
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	99.56
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.56
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	99.56
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.56
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.56
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.55
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	99.55
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	99.55
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.55
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.55
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.55
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.54
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.54
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	99.54
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.54
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	99.54
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	99.54
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	99.54
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.54
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.54
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	99.53
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	99.53
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	99.53
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.53
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.53
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.52
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	99.52
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.52
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.52
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.52
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.52
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.52
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.52
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.51
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.51
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.51
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.51
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.51
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.51
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.51
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.51
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	99.51
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.51
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.51
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.5
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.5
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.5
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.5
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.49
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.49
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.49
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.49
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.48

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=100.00  E-value=1.8e-46  Score=344.00  Aligned_cols=368  Identities=21%  Similarity=0.321  Sum_probs=281.2

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecCccc---cccEEEee---cCeEEEeecCCCCCeEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLEPYQ---TKDIVVMQ---NGSLLFTRVNQNHQGRY  127 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~~~~---~~~~~~~~---~~~l~i~~~~~~d~G~y  127 (460)
                      +|.+.. +....+.+|+++.|.|.+.|.|.+ .|+|+|+  |..+....   ..++.+..   .+.|.|.++..+|+|.|
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p-~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   78 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIP-EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY   78 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCC-EEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCC-eEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEE
Confidence            355554 445667779999999999998866 7999999  88775321   34454443   34799999999999999


Q ss_pred             EEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc--ccEEEe
Q psy535          128 TCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK--NRVKIV  205 (460)
Q Consensus       128 ~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~--~~~~~~  205 (460)
                      +|.|.|..|..  +..+.|.|..+|.+...+.. ..+..|+.+.|.|.+   .+.|.+.+.|++++..+...  .++...
T Consensus        79 ~C~a~n~~g~~--~~~~~l~V~~~P~~~~~~~~-~~~~~g~~~~l~C~~---~g~p~~~i~W~~~g~~l~~~~~~~~~~~  152 (389)
T 2jll_A           79 DCEAASRIGGH--QKSMYLDIEYAPKFISNQTI-YYSWEGNPINISCDV---KSNPPASIHWRRDKLVLPAKNTTNLKTY  152 (389)
T ss_dssp             EEEEECSSCEE--EEEEEEEEEEEEEECCSCCE-EEECTTCCEEEEECE---EEESCCEEEEEETTEESSCTTCTTEEEE
T ss_pred             EEEEEeCCCCc--ceEEEEEEEeCCEEecCcce-EEeccCCEEEEEEEE---EecCCCeEEEEECCccCCcccCceEEEe
Confidence            99999998875  45566666778877665443 257889999999999   68899999999954433222  234332


Q ss_pred             ----cceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEE
Q psy535          206 ----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYV  280 (460)
Q Consensus       206 ----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~  280 (460)
                          ...|.|.++...|.|.|+|.|.|..|.......+.+.. +|.+|..+.. ......+.|.|.++...++.++..|.
T Consensus       153 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~-~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~  231 (389)
T 2jll_A          153 STGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD-VPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQ  231 (389)
T ss_dssp             ECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECC-CCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEE
T ss_pred             ccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecC-CCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEE
Confidence                23699999999999999999999999988887777754 5666755543 44567899999987666666667899


Q ss_pred             EEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCC-CCCCCcceEEEeec-ceE
Q psy535          281 IWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGP-KPGPPRNVSVTEVN-NGF  358 (460)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~-~P~~p~~~~~~~~~-~~v  358 (460)
                      +.|+..+...|....... ....+.|.+|.+++.|.|+|.|.|..|.+..+..+.+.+... +|.+|. +.....+ +++
T Consensus       232 v~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~-~~~~~~~~~~v  309 (389)
T 2jll_A          232 VDVKEVASEIWKIVRSHG-VQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS-IHGQPSSGKSF  309 (389)
T ss_dssp             EEEEETTCSCCEEEECST-TCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCCC-EEEEEETTTEE
T ss_pred             EEEEECCCcccEEeeccC-CcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCCc-cccccCcCCEE
Confidence            999888777777654432 557899999999999999999999999999999888887665 566775 5554444 699


Q ss_pred             EEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEE
Q psy535          359 VISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEF  438 (460)
Q Consensus       359 ~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~  438 (460)
                      .|+|.+|.++++++.+|.|+|+..+.                         ..|............+.|.+|.|++.|.|
T Consensus       310 ~l~W~~p~~~~~~i~~Y~v~~~~~~~-------------------------~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~  364 (389)
T 2jll_A          310 KLSITKQDDGGAPILEYIVKYRSKDK-------------------------EDQWLEKKVQGNKDHIILEHLQWTMGYEV  364 (389)
T ss_dssp             EEEECCCCCCSSCCCEEEEEEEC------------------------------CCBCCEECTTCCEEEECSCCTTCEEEE
T ss_pred             EEEEECCCCCCCcccEEEEEEEeCCC-------------------------CcceeEeeccCCcceEEeCCcCCCCEEEE
Confidence            99999998888899999999997432                         12222222335667899999999999999


Q ss_pred             EEEEeecCCCCCCCceeEeecC
Q psy535          439 QVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       439 ~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      +|+|.|..|.|++|.. .++|.
T Consensus       365 ~V~A~n~~G~s~~s~~-~~~T~  385 (389)
T 2jll_A          365 QITAANRLGYSEPTVY-EFSMP  385 (389)
T ss_dssp             EEEEEC-CCBCCCEEE-EEECC
T ss_pred             EEEEEcCCcCCCceee-EecCC
Confidence            9999999999999966 66663

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=5.1e-37  Score=294.39  Aligned_cols=410  Identities=22%  Similarity=0.328  Sum_probs=274.0

Q ss_pred             CCcccCcccceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe---cCCeeEEcceeeeecceeeE
Q psy535            1 MNTKVGSLETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQG   74 (460)
Q Consensus         1 ~~~~~~~~~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~   74 (460)
                      ||+.....+.|+++...   ++|.|.+++.+|+|.|+|.|.|..|.. .....|.|.   .+|.+...+......+|+++
T Consensus        41 k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v  119 (570)
T 3b43_A           41 KEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAV-ASSAVLVIKERKLPPSFARKLKDVHETLGFPV  119 (570)
T ss_dssp             CSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEECCCCCCCEESSCCCCEEEETTSCE
T ss_pred             ECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeCCceE-EEEEEEEECCCCCCCcccccCCCeEecCCCeE
Confidence            34455555667766543   389999999999999999999998875 455666665   35666666666777889999


Q ss_pred             EEEEEEecCCCCCeEEEeeCCeecCccccccEE-EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee-CCC
Q psy535           75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIV-VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR-KPP  152 (460)
Q Consensus        75 ~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~-~~p  152 (460)
                      .|.|.+.|.|++ .|+|+|+|..+......... ....++|.|.++..+|+|.|+|.|.|..|....+..+.|... .||
T Consensus       120 ~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp  198 (570)
T 3b43_A          120 AFECRINGSEPL-QVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPP  198 (570)
T ss_dssp             EEEEEEESSSSC-EEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCC
T ss_pred             EEEEEEccCCCC-EEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCC
Confidence            999999998765 89999999988643221111 122357999999999999999999999888766666666543 467


Q ss_pred             ceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE--e--cceEEEccccceeceEEEEEEec
Q psy535          153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI--V--GGNITIEGLRRVDFGYYECVVSN  228 (460)
Q Consensus       153 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~~~g~y~C~a~n  228 (460)
                      .+...|... .+..|+.+.|.|.+   .|.|.+.+.|++++..+....+..+  .  ...|.|.++...|+|.|+|.|.|
T Consensus       199 ~~~~~p~~~-~v~~G~~~~l~C~~---~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N  274 (570)
T 3b43_A          199 FFDLKPVSV-DLALGESGTFKCHV---TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN  274 (570)
T ss_dssp             EEEECCCCB-CCBSBSCEEEEEEE---ESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEE
T ss_pred             ccccCCcee-EecCCCeEEEEEEE---EECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEEC
Confidence            777777665 67899999999999   7889999999996554444444333  2  34799999999999999999999


Q ss_pred             ccceeeeeeEEEEecCCCCC--CCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCC---CeeeeeccCCCCce
Q psy535          229 EVATIVQAAQLVVEGTQPHA--PYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK---DWLPIPVTPPGSTQ  303 (460)
Q Consensus       229 ~~g~~~~~~~l~v~~~~p~~--p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  303 (460)
                      ..|.......|.|..+|...  +........+..+.|.|..  .+.+.+.   +.|++++...   ....... ......
T Consensus       275 ~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~--~g~P~p~---v~W~k~~~~l~~~~~~~~~~-~~~~~~  348 (570)
T 3b43_A          275 VAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIK---VLWYKDETEIQESSKFRMSF-VESVAV  348 (570)
T ss_dssp             TTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEE--ESSSSCE---EEEEETTEECCCSSSEEEEE-ETTEEE
T ss_pred             CCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEE--eeCCCCE---EEEeECCEECCCCCcEEEEE-ECCEEE
Confidence            99998888888776432110  0111122345678888874  3444443   6788765421   1111111 113457


Q ss_pred             EEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcC
Q psy535          304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDG  383 (460)
Q Consensus       304 ~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~  383 (460)
                      |.|.++...+.|.|+|.|.|..|....+..+.+...+.....|..+.+.. ...+.|.......   |.  ..|.|..++
T Consensus       349 L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~-G~~v~l~C~~~g~---P~--p~v~W~k~g  422 (570)
T 3b43_A          349 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-GADVHLECELQGT---PP--FQVSWHKDK  422 (570)
T ss_dssp             EEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECT-TCCEEEEEEEESS---SS--CCCEEEETT
T ss_pred             EEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecC-CCEEEEEEEEecC---CC--CEEEEEECC
Confidence            99999999999999999999999776665666553221112444443332 2345555443211   10  124455444


Q ss_pred             CeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCC
Q psy535          384 SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM  450 (460)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~  450 (460)
                      ..  +..      ...+.+            ..  ......+.|.++.....-.++..|.|..|...
T Consensus       423 ~~--l~~------~~~~~~------------~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  467 (570)
T 3b43_A          423 RE--LRS------GKKYKI------------MS--ENFLTSIHILNVDSADIGEYQCKASNDVGSDT  467 (570)
T ss_dssp             EE--CCS------SSSEEE------------EE--ETTEEEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             EE--CcC------CCCEEE------------EE--cCCEEEEEECCCChhhCEEEEEEEEECCCeEE
Confidence            20  000      000100            00  01234677888888888888999999999654

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=2.1e-37  Score=297.00  Aligned_cols=395  Identities=21%  Similarity=0.346  Sum_probs=265.2

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe---cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD   94 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~   94 (460)
                      ++|.|.+++.+|+|.|+|.|.|..|.. .....|.|.   .||.+...|....+.+|++++|.|.+.|.|++ .++|+|+
T Consensus       157 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p-~i~W~k~  234 (570)
T 3b43_A          157 ATLQILQTDQSHVGQYNCSASNPLGTA-SSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPI-KITWAKD  234 (570)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCC-EEEEEET
T ss_pred             EEEEECcCChHHCEEEEEEEEeCCcEE-EEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCC-EEEEEEC
Confidence            489999999999999999999998875 556677764   46777788888888999999999999998765 8999999


Q ss_pred             CeecCccccccEEEee-cCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEE
Q psy535           95 KRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMH  173 (460)
Q Consensus        95 ~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~  173 (460)
                      +..+.+....++.... .+.|.|.++..+|+|.|+|.|.|..|..  +..+.|.|..+|.+.........+..|+.+.|.
T Consensus       235 g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~--~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~  312 (570)
T 3b43_A          235 NREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD--SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYE  312 (570)
T ss_dssp             TEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEE--EEEEEECCBCCCEEEECCCSBCCEESSCEEEEE
T ss_pred             CEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcE--EEEEEEEeecCCcccccCCCccEEcCCCcEEEE
Confidence            9998753332333222 2479999999999999999999988875  445667778899877665544357789999999


Q ss_pred             eeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCC--C
Q psy535          174 CEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP--H  247 (460)
Q Consensus       174 C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p--~  247 (460)
                      |.+   .|.|.+.+.|++++..+....+..+.    ...|.|.++...|+|.|+|.|.|..|.......|.|..+|.  .
T Consensus       313 C~~---~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~  389 (570)
T 3b43_A          313 CKI---GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRK  389 (570)
T ss_dssp             EEE---ESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECS
T ss_pred             EEE---eeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeec
Confidence            999   78999999999965544444444332    24699999999999999999999999988888888875321  1


Q ss_pred             CCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCC---CeeeeeccCCCCceEEEccCccCccEEEEEEEEcC
Q psy535          248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK---DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE  324 (460)
Q Consensus       248 ~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~  324 (460)
                      .|..+. ...+..+.|.|..  .+.|.+.   +.|++++...   ....+. .......|.|.++...+.|.|.|.|.|.
T Consensus       390 ~~~~~~-~~~G~~v~l~C~~--~g~P~p~---v~W~k~g~~l~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~A~N~  462 (570)
T 3b43_A          390 KPHPVE-TLKGADVHLECEL--QGTPPFQ---VSWHKDKRELRSGKKYKIM-SENFLTSIHILNVDSADIGEYQCKASND  462 (570)
T ss_dssp             CCCCEE-ECTTCCEEEEEEE--ESSSSCC---CEEEETTEECCSSSSEEEE-EETTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCcee-ecCCCEEEEEEEE--ecCCCCE---EEEEECCEECcCCCCEEEE-EcCCEEEEEECCCChhhCEEEEEEEEEC
Confidence            222222 2345678888874  3444443   5677765321   111111 1113357899999999999999999999


Q ss_pred             CCCCCCCCcEEEEccCCCCC---CCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCccccc
Q psy535          325 LGDGMLSNIVVVKTKGPKPG---PPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL  401 (460)
Q Consensus       325 ~G~~~~s~~~~~~~~~~~P~---~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~  401 (460)
                      .|....+..+.+..   +|.   .+.++.+. ....+.|.......+  +   -.|.|..++.       .+......+ 
T Consensus       463 ~G~~~~~~~l~v~~---~P~~~~~~~~~~~~-~g~~~~l~c~~~g~p--~---~~v~W~k~~~-------~~~~~~~~~-  525 (570)
T 3b43_A          463 VGSDTCVGSITLKA---PPRFVKKLSDISTV-VGEEVQLQATIEGAE--P---ISVAWFKDKG-------EIVRESDNI-  525 (570)
T ss_dssp             SCEEEEEEEEEECC---CCEEEECCCCBCCB-TTCCEEEEEEEESCS--S---CCCEEEETTE-------ECCCCTTTE-
T ss_pred             CCeEEEEEEEEecc---CCcccccCCCceec-CCCeEEEEEEEecCC--C---CEEEEEeCCe-------EeccCCCeE-
Confidence            99765444444432   121   12221111 122344443321110  0   0133333321       000000000 


Q ss_pred             ccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeE
Q psy535          402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV  456 (460)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~  456 (460)
                                ..   ....+...+.|.++.+...-.+...|.|.+|....+-.+.
T Consensus       526 ----------~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~  567 (570)
T 3b43_A          526 ----------WI---SYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLS  567 (570)
T ss_dssp             ----------EE---CCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEEC
T ss_pred             ----------EE---EECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEE
Confidence                      00   0112345778888888878888899999999875554443

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=285.47  Aligned_cols=412  Identities=17%  Similarity=0.137  Sum_probs=279.0

Q ss_pred             eEEEeecCCCC-CeeEEEEEEeCCCCcceeeeEEEEe---cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEE-Ee-
Q psy535           19 TLVINPVGSDD-SGLYMCEVSNGIGEPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVT-WT-   92 (460)
Q Consensus        19 ~L~i~~~~~~d-~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~-W~-   92 (460)
                      .|.|..+...+ ++.|+|.+.+..|......+.+.+.   .+|.+. .+....+.+|++++|.|.+.|.|.+ .+. |+ 
T Consensus       124 ~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p-~i~~W~~  201 (731)
T 2v5y_A          124 ELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVA-GDRLWLQ  201 (731)
T ss_dssp             EEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCT-TCEEEEE
T ss_pred             EEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccccc-cccceEEeCCCcEEEEEEeCCCCCC-ceeEEEe
Confidence            35555543333 5889998877777643333443332   466665 5667888999999999999999887 466 88 


Q ss_pred             -eCCeecCccccccEEEe---ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCC
Q psy535           93 -KDKRLLEPYQTKDIVVM---QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGE  168 (460)
Q Consensus        93 -~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~  168 (460)
                       ++|..+....  ...+.   ..++|.|.++...|+|.|+|.|.|..|.. .+..+.|.|..+|.....+...  .....
T Consensus       202 ~~~g~~l~~~~--~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~-~s~~~~l~V~~~P~~~~~p~~~--~~~~~  276 (731)
T 2v5y_A          202 GIDVRDAPLKE--IKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG-ISNYAELVVKEPPVPIAPPQLA--SVGAT  276 (731)
T ss_dssp             ESSSCCEEEEE--EEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEE-ECCCEEEEEECCCCBSSCCEEE--EECSS
T ss_pred             cCCCccccccc--eEEeccccceEEEEEcccccccCeEEEEEEECCCCCc-ceeeEEEEEecCCCCCCCccee--ccCCc
Confidence             6777764311  11111   12579999999999999999999998862 2334556667777655444432  23456


Q ss_pred             eEEEEeeeeccCC-CCCC--eeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEe--cccceeeeeeEEEEe-
Q psy535          169 SVDMHCEAQEAEG-TQKP--TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVS--NEVATIVQAAQLVVE-  242 (460)
Q Consensus       169 ~~~l~C~~~~~~~-~p~~--~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~--n~~g~~~~~~~l~v~-  242 (460)
                      .+.|.|......+ .+..  .+.|...++...  .........+.|.++...+.+.|+|.|.  |..|....+..+.+. 
T Consensus       277 ~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~--~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t  354 (731)
T 2v5y_A          277 YLWIQLNANSINGDGPIVAREVEYCTASGSWN--DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRT  354 (731)
T ss_dssp             CEEEECCCSSBSSCSCCCEEEEEEEESSSSCE--EEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEEC
T ss_pred             eEEEEeCCcccCCCCccEEEEEEEEECCCCce--EEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeee
Confidence            7888887632122 2222  567766332111  1111234578999999999999999999  998876544433332 


Q ss_pred             --cCCCCCCCceee-eeecceEEEEeecCCCCC-CCceeeEEEEEEecCCCCeeee----eccCCCCceEEEccCccCcc
Q psy535          243 --GTQPHAPYNITG-VATEFSVTLEWLPGYSGG-PDLKQNYVIWYREQGNKDWLPI----PVTPPGSTQITINRLTPATT  314 (460)
Q Consensus       243 --~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~l~~~~~  314 (460)
                        ..||.+|.++.. .....++.|+|.++.... ...+..|.+.|+......+...    .........+.|.+|.+++.
T Consensus       355 ~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~  434 (731)
T 2v5y_A          355 KCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTN  434 (731)
T ss_dssp             CCCCCSCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCE
T ss_pred             cCCCCCCCCceeEEEeccCCeEEEEEECCCcccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCE
Confidence              234566777654 456779999999864321 2233689998887654333211    12233567899999999999


Q ss_pred             EEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCc--ceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeecccc
Q psy535          315 YEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPR--NVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQ  392 (460)
Q Consensus       315 ~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~--~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~  392 (460)
                      |.|+|.|.|..|.+ .|..+.+.+...+|.+|.  .+......+++.|+|++|...++.|.+|+|+|+..+....     
T Consensus       435 Y~~~V~A~n~~G~s-~S~~~~~~T~~~~P~~p~~~~~~~~~~~~si~l~W~~P~~~~g~i~~Y~V~~~~~~~~~~-----  508 (731)
T 2v5y_A          435 VSVKLILMNPEGRK-ESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDP-----  508 (731)
T ss_dssp             EEEEEEEECSSCEE-ECCCEEEECCCCCCCCCCTTTCEEEEETTEEEEECCCCSCCSSCCCEEEEEEEEEEECC------
T ss_pred             EEEEEEEEcCCCCC-CCceEEEEccCCCCCCCCcceEEeeecCCeEEEEEcCCCCCCCCccceEEEEEECcCCCc-----
Confidence            99999999999998 488899999888887654  5665554579999999998878899999999997542000     


Q ss_pred             CCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          393 IRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                            .+..    .+. .+  ........+.++|.+|.|++.|.|+|+|.|..|.|++|. +.++|
T Consensus       509 ------~~~~----~~~-~~--~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~-~~~~T  561 (731)
T 2v5y_A          509 ------EIDL----SNQ-SG--RVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPAT-NQFTT  561 (731)
T ss_dssp             --------CC----CCC-EE--EEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEEE-EEEEC
T ss_pred             ------cccc----cCc-ce--EEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCcc-cEEEc
Confidence                  0000    000 00  011124567899999999999999999999999999884 66665

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=6.2e-33  Score=270.70  Aligned_cols=383  Identities=16%  Similarity=0.220  Sum_probs=256.3

Q ss_pred             ccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCC
Q psy535            8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANP   84 (460)
Q Consensus         8 ~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~   84 (460)
                      +.+|+.+..+++|.|.+++.+|+|.|+|.+.+.........+.|.|..   +|.+... ....+.+|+.+.|.|.+.+ |
T Consensus        61 ~~gr~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~-~~~~v~~g~~v~l~C~~~~-p  138 (642)
T 1e07_A           61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSN-NSKPVEDKDAVAFTCEPET-Q  138 (642)
T ss_pred             ccCceeeccCCcEEECCCCcccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEcc-CceeEecCCcEEEEEECCC-C
Confidence            357899988999999999999999999999986433335567788875   3444332 3355778999999999988 5


Q ss_pred             CCCeEEEeeCCeecCccccccEEEe-ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC-ceeeCCCccc
Q psy535           85 TFQYVTWTKDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP-AFTIKPEAMY  162 (460)
Q Consensus        85 ~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p-~~~~~~~~~~  162 (460)
                      . +.++|+++|..+..  ..++... .++.|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|..+| ...+.+... 
T Consensus       139 ~-~~v~W~~~g~~l~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~p~~~~~~~~~~-  213 (642)
T 1e07_A          139 D-ATYLWWVNNQSLPV--SPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSAR-RSDSVILNVLYGPDAPTISPLNT-  213 (642)
T ss_pred             C-eeEEEEECCeECCC--CCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCc-ccceEEEEEEeCCCCcEEecCCc-
Confidence            4 48999999998863  2333332 35689999999999999999999988764 4455666666444 344445444 


Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeee--eEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA--AQLV  240 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~--~~l~  240 (460)
                      .+..|+.+.|.|.+   .+.|.+.+.|++++. .+.      ....|.|.++...|.|.|+|.|.|..|....+  ..+.
T Consensus       214 ~~~~G~~~~l~C~~---~g~p~~~i~W~~~g~-~i~------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~  283 (642)
T 1e07_A          214 SYRSGENLNLSCHA---ASNPPAQYSWFVNGT-FQQ------STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT  283 (642)
T ss_pred             ccccCCEEEEEEEc---CCCCCcEEEEEECCe-Ecc------cCCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEE
Confidence            67899999999998   789999999999443 332      24569999999999999999999988865443  4555


Q ss_pred             EecCCCCCCCce----eeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe-eeeeccCCCCceEEEccCccCccE
Q psy535          241 VEGTQPHAPYNI----TGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-LPIPVTPPGSTQITINRLTPATTY  315 (460)
Q Consensus       241 v~~~~p~~p~~~----~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~  315 (460)
                      +...++ +|...    .....+..+.|.|...  +.+ +.   +.|++++..... ...... .....|.|.++...+.|
T Consensus       284 v~~~~~-~p~i~~~~~~~~~~g~~v~l~C~~~--~~p-~~---v~W~~~g~~l~~~~~~~~~-~~~~~L~i~~~~~~d~G  355 (642)
T 1e07_A          284 VYAEPP-KPFITSNNSNPVEDEDAVALTCEPE--IQN-TT---YLWWVNNQSLPVSPRLQLS-NDNRTLTLLSVTRNDVG  355 (642)
T ss_pred             EEccCC-CCEEEcCCceeEecCCcEEEEEECC--CCC-cc---EEEEECCccCCCcCCEEEe-CCCCEEEEeccCcccCe
Confidence            544222 22211    1222345688998853  222 22   677777543211 111111 13568999999999999


Q ss_pred             EEEEEEEcCCCCCCC-CCcEEEEccCCCCC-CCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccC
Q psy535          316 EFQVVGKNELGDGML-SNIVVVKTKGPKPG-PPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQI  393 (460)
Q Consensus       316 ~~~~~a~n~~G~~~~-s~~~~~~~~~~~P~-~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~  393 (460)
                      .|+|.|.|..|.... ...+.+...+..|. .|....+ .....+.|.......   +..  .+.|..++.         
T Consensus       356 ~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~-~~g~~~~l~C~~~g~---p~~--~i~W~~~g~---------  420 (642)
T 1e07_A          356 PYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYY-RPGVNLSLSCHAASN---PPA--QYSWLIDGN---------  420 (642)
T ss_pred             eEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEe-cCCCcEEEEEEcCcc---CCC--eEEEEECCE---------
Confidence            999999999986421 23344432211111 2222222 223456666665321   111  355554442         


Q ss_pred             CCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCce
Q psy535          394 RPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI  454 (460)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~  454 (460)
                                              .......+.|.++.+.....+++.|.|..|....+..
T Consensus       421 ------------------------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~  457 (642)
T 1e07_A          421 ------------------------IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTV  457 (642)
T ss_pred             ------------------------EcCCCceEEEccCChhhCeEEEEEEEcCCCCCcccce
Confidence                                    0012345788888888888999999999987766543

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=100.00  E-value=1.4e-33  Score=258.37  Aligned_cols=321  Identities=20%  Similarity=0.256  Sum_probs=230.6

Q ss_pred             cceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCC
Q psy535            9 ETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPT   85 (460)
Q Consensus         9 ~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~   85 (460)
                      ++|+.+..+   ++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.
T Consensus        51 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~  129 (389)
T 2jll_A           51 DGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGH-QKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPP  129 (389)
T ss_dssp             SSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESC
T ss_pred             CCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCCc-ceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCC
Confidence            678888754   499999999999999999999999885 7889999999998877776667889999999999999886


Q ss_pred             CCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCccc
Q psy535           86 FQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMY  162 (460)
Q Consensus        86 ~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~  162 (460)
                      + .++|++++..+......++....++   .|.|.++...|+|.|+|.|.|..|.....  +.+.+..+|......  ..
T Consensus       130 ~-~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~--~~l~v~~~P~~P~~~--~~  204 (389)
T 2jll_A          130 A-SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQE--YILALADVPSSPYGV--KI  204 (389)
T ss_dssp             C-EEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEE--EEEEECCCCCCCEEE--EE
T ss_pred             C-eEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEE--EEEEecCCCCCCcce--EE
Confidence            5 8999999999875444455554433   69999999999999999999999885443  455555555322111  11


Q ss_pred             ccCCCCeEEEEeeeec-cCCCCCC--eeEEEcCCCccCCcccEEE--ecceEEEccccceeceEEEEEEecccceeeeee
Q psy535          163 QRKVGESVDMHCEAQE-AEGTQKP--TITWQRRDGVALPKNRVKI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~-~~~~p~~--~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      ....+..+.|.|.... +.+.|..  .+.|.+.+.....  ....  ....+.|.++...+.|.|+|.|.|..|....+.
T Consensus       205 ~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~--~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~  282 (389)
T 2jll_A          205 IELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWK--IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSK  282 (389)
T ss_dssp             EEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCE--EEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCC
T ss_pred             eeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccE--EeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCc
Confidence            2234567888887421 1233432  5778775432221  1111  124699999999999999999999998765544


Q ss_pred             EEEEe---cCCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCcc
Q psy535          238 QLVVE---GTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATT  314 (460)
Q Consensus       238 ~l~v~---~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  314 (460)
                      .+.+.   ..+|.+|..........++.|+|.++.+++.+. ..|.++|+..+...|............+.|.+|.+++.
T Consensus       283 ~~~~~t~~~~~p~~p~~~~~~~~~~~v~l~W~~p~~~~~~i-~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~  361 (389)
T 2jll_A          283 IEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPI-LEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMG  361 (389)
T ss_dssp             CEEEECCCCCCCCCCCEEEEEETTTEEEEEECCCCCCSSCC-CEEEEEEEC-----CCBCCEECTTCCEEEECSCCTTCE
T ss_pred             ceEEEecCCCCCCCCccccccCcCCEEEEEEECCCCCCCcc-cEEEEEEEeCCCCcceeEeeccCCcceEEeCCcCCCCE
Confidence            33332   125666654444557789999999876655554 79999999876666654333333567899999999999


Q ss_pred             EEEEEEEEcCCCCCCCCCcEEEEcc
Q psy535          315 YEFQVVGKNELGDGMLSNIVVVKTK  339 (460)
Q Consensus       315 ~~~~~~a~n~~G~~~~s~~~~~~~~  339 (460)
                      |.|+|.|.|..|.|.+|.. .+.+.
T Consensus       362 Y~~~V~A~n~~G~s~~s~~-~~~T~  385 (389)
T 2jll_A          362 YEVQITAANRLGYSEPTVY-EFSMP  385 (389)
T ss_dssp             EEEEEEEEC-CCBCCCEEE-EEECC
T ss_pred             EEEEEEEEcCCcCCCceee-EecCC
Confidence            9999999999999887744 55554

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=1.1e-32  Score=268.82  Aligned_cols=387  Identities=17%  Similarity=0.249  Sum_probs=265.5

Q ss_pred             CcccCcccceEEEeeC-CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC-eeEEcceeeeecceeeEEEEEE
Q psy535            2 NTKVGSLETRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA-KVTFTPTVQYLPFRLQGVVQCH   79 (460)
Q Consensus         2 ~~~~~~~~~r~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~   79 (460)
                      |++....+.|+.+..+ ++|.|.+++.+|+|.|+|.|.|..+...+..+.|.|..+| .+.+.|....+.+|+.+.|.|.
T Consensus       147 ~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~  226 (642)
T 1e07_A          147 NNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCH  226 (642)
T ss_pred             CCeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEE
Confidence            3444556678887654 5999999999999999999999888755677888888544 4556677777889999999999


Q ss_pred             EecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC-ceeeCC
Q psy535           80 IKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP-AFTIKP  158 (460)
Q Consensus        80 ~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p-~~~~~~  158 (460)
                      +.+.|.+ .++|+++|..+.          ..+.|.|.++..+|+|.|+|.|.|..|....+..+.|.|..++ ...+..
T Consensus       227 ~~g~p~~-~i~W~~~g~~i~----------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~  295 (642)
T 1e07_A          227 AASNPPA-QYSWFVNGTFQQ----------STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITS  295 (642)
T ss_pred             cCCCCCc-EEEEEECCeEcc----------cCCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEc
Confidence            9888766 899999998874          2356999999999999999999999887766667777776532 112222


Q ss_pred             CcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE--ecceEEEccccceeceEEEEEEeccccee-ee
Q psy535          159 EAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI--VGGNITIEGLRRVDFGYYECVVSNEVATI-VQ  235 (460)
Q Consensus       159 ~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~  235 (460)
                      .....+..|+.+.|.|.+   .+.| +.+.|++++..+....++..  .+..|.|.++...|.|.|+|.|.|..|.. +.
T Consensus       296 ~~~~~~~~g~~v~l~C~~---~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~  371 (642)
T 1e07_A          296 NNSNPVEDEDAVALTCEP---EIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSD  371 (642)
T ss_pred             CCceeEecCCcEEEEEEC---CCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCccee
Confidence            222245668889999998   5665 79999996554433444444  35689999999999999999999998864 34


Q ss_pred             eeEEEEecCCCCCCCce---eeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccC
Q psy535          236 AAQLVVEGTQPHAPYNI---TGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPA  312 (460)
Q Consensus       236 ~~~l~v~~~~p~~p~~~---~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~  312 (460)
                      ...|.|...|+ .+...   .....+..+.|.|..  .+.+.+.   +.|++++..         ......|.|.++...
T Consensus       372 ~~~l~V~~~p~-~~~~~~~~~~~~~g~~~~l~C~~--~g~p~~~---i~W~~~g~~---------~~~~~~L~i~~~~~~  436 (642)
T 1e07_A          372 PVILNVLYGPD-DPTISPSYTYYRPGVNLSLSCHA--ASNPPAQ---YSWLIDGNI---------QQHTQELFISNITEK  436 (642)
T ss_pred             eEEEEEEcCCC-CCeecCCceEecCCCcEEEEEEc--CccCCCe---EEEEECCEE---------cCCCceEEEccCChh
Confidence            46677764332 22111   123345678888874  3445443   677776431         113467999999999


Q ss_pred             ccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcc----eEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeee
Q psy535          313 TTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN----VSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTL  388 (460)
Q Consensus       313 ~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~----~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~  388 (460)
                      +.|.|+|.|.|..|....+..+.+..... +.+|.-    -.....++.+.|.+....    +  ...+.|..++.-  +
T Consensus       437 d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~-~~~p~i~~~~~~~v~~g~~v~l~C~~~~----~--~~~i~W~~~g~~--l  507 (642)
T 1e07_A          437 NSGLYTCQANNSASGHSRTTVKTITVSAE-LPKPSISSNNSKPVEDKDAVAFTCEPEA----Q--NTTYLWWVNGQS--L  507 (642)
T ss_pred             hCeEEEEEEEcCCCCCcccceEEEEEecc-CCCceEecCCceeecCCCeEEEEEECCC----C--CcEEEEEECCEe--C
Confidence            99999999999999776666555554332 222211    111222457888887652    1  124455544420  0


Q ss_pred             ccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCC
Q psy535          389 NKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG  449 (460)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s  449 (460)
                      ..      ..++             .+   ..+...+.|.++.......+++.|.|..|..
T Consensus       508 ~~------~~~~-------------~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  546 (642)
T 1e07_A          508 PV------SPRL-------------QL---SNGNRTLTLFNVTRNDARAYVCGIQNSVSAN  546 (642)
T ss_pred             CC------CCcE-------------EE---cCCCcEEEEeecChhcCceEEEEeEcCCCCc
Confidence            00      0000             00   1123578888888888888889999999864

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=7.3e-34  Score=284.84  Aligned_cols=397  Identities=20%  Similarity=0.298  Sum_probs=271.6

Q ss_pred             cceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCe
Q psy535            9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQY   88 (460)
Q Consensus         9 ~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~   88 (460)
                      +.|+.. .+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..++.+...|....+.+|++++|.|.+.+.|.+ .
T Consensus       298 ~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~  374 (816)
T 3dmk_A          298 NDRVKQ-VSGTLIIKDAVVEDSGKYLCVVNNSVGGE-SVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK-T  374 (816)
T ss_dssp             SSSEEE-ETTEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCC-E
T ss_pred             CCceEe-ccceEEECCCCHhHCEEEEEEEEcCCCce-EEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCC-E
Confidence            445544 46799999999999999999999998875 67788889888888888888889999999999999998766 8


Q ss_pred             EEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe-eCCCceeeCCCcccccCCC
Q psy535           89 VTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV-RKPPAFTIKPEAMYQRKVG  167 (460)
Q Consensus        89 v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v-~~~p~~~~~~~~~~~~~~g  167 (460)
                      ++|+++|..+..         .++.|.|.++..+|+|.|+|.|.|..|....+..+.|.+ ..+|.+...+... .+..|
T Consensus       375 v~W~k~g~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~-~v~~G  444 (816)
T 3dmk_A          375 VSWMKDGKAIGH---------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEE-TMEPG  444 (816)
T ss_dssp             EEEEETTEECSC---------CSSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCE-EECSS
T ss_pred             EEEEECCEECCC---------CCCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcce-EEcCC
Confidence            999999998853         245799999999999999999999888765555555443 3566666655554 67899


Q ss_pred             CeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe-----c----ceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535          168 ESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-----G----GNITIEGLRRVDFGYYECVVSNEVATIVQAAQ  238 (460)
Q Consensus       168 ~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~-----~----~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~  238 (460)
                      +.+.|.|.+   .|.|.+.+.|++++..+....+....     +    ..|.|.++...|.|.|+|.|.|..|.......
T Consensus       445 ~~v~L~C~~---~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  521 (816)
T 3dmk_A          445 PSVFLKCVA---GGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAK  521 (816)
T ss_dssp             SCEEEEEEE---ECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEE
T ss_pred             CCEEEEEEE---ecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEE
Confidence            999999998   78999999999955444334443321     1    25999999999999999999999999888888


Q ss_pred             EEEecCCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCc-cCccEEE
Q psy535          239 LVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLT-PATTYEF  317 (460)
Q Consensus       239 l~v~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~~  317 (460)
                      |.|...|...+........+..+.|.|..  .+.+.   .-+.|++++......... .......+.|.++. ..+.|.|
T Consensus       522 l~V~~~p~~~~~~~~~v~~G~~v~l~C~~--~g~p~---~~i~W~k~~~~l~~~~~~-~~~~~~~l~i~~v~~~~d~G~Y  595 (816)
T 3dmk_A          522 LNVYGLPYIRQMEKKAIVAGETLIVTCPV--AGYPI---DSIVWERDNRALPINRKQ-KVFPNGTLIIENVERNSDQATY  595 (816)
T ss_dssp             EEECSSCEECCCCCEEEETTCCEEEECCE--ECSSE---EEEEEEETTEESCCSTTE-EECTTSEEEESSCCHHHHCEEE
T ss_pred             EEEecCCeeEccCCeEEecCCeEEEEEEe--cCCCC---CEEEEEECCeEcccCCce-EEecCCeEEEEecCccccCEEE
Confidence            88875432111111223356678888864  23332   246777765422111000 01134579999997 6899999


Q ss_pred             EEEEEcCCCCCCCCCcEEEEccCCCCC---CCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCC
Q psy535          318 QVVGKNELGDGMLSNIVVVKTKGPKPG---PPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIR  394 (460)
Q Consensus       318 ~~~a~n~~G~~~~s~~~~~~~~~~~P~---~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~  394 (460)
                      +|.|.|..|... +..+.+.....++.   .+.... ......+.|.+...... .+   ..|.|..++.-.  .     
T Consensus       596 ~C~a~n~~g~~~-~~~~~v~v~~~p~~~~~~~~~~~-~~~G~~v~L~C~~~~~~-~~---~~i~W~~~g~~l--~-----  662 (816)
T 3dmk_A          596 TCVAKNQEGYSA-RGSLEVQVMVLPRIIPFAFEEGP-AQVGQYLTLHCSVPGGD-LP---LNIDWTLDGQAI--S-----  662 (816)
T ss_dssp             EEEEEESSSCEE-EEEEEEEEECCCCCBCCCCCSSC-EESSCEEEEEEBCCCSS-SC---CEEEEEETTBCC--C-----
T ss_pred             EEEEEECCCcee-eeeEEEEEecCCccccccccccc-cCCCCeEEEEEEEeCCC-CC---CEEEEEECCeEc--C-----
Confidence            999999988542 22333332222111   112222 22246788888865321 11   245555554200  0     


Q ss_pred             CCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCce
Q psy535          395 PEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI  454 (460)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~  454 (460)
                       ....+.             ..........+.|.++.......+++.|.|..|....+..
T Consensus       663 -~~~~~~-------------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  708 (816)
T 3dmk_A          663 -EDLGIT-------------TSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTP  708 (816)
T ss_dssp             -GGGTCE-------------EEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             -CCCCee-------------EEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEE
Confidence             000000             0001123457889999999999999999999997644433

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=1e-31  Score=259.39  Aligned_cols=411  Identities=18%  Similarity=0.217  Sum_probs=262.0

Q ss_pred             ccceEEEee---CC--eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEec
Q psy535            8 LETRVVIKK---DG--TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA   82 (460)
Q Consensus         8 ~~~r~~~~~---~~--~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~   82 (460)
                      .++|+++..   +|  +|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|..+|.+...+....+.+|++++|.|.+.+
T Consensus        60 ~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~  138 (585)
T 2ocw_A           60 YAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGL-SFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKT  138 (585)
T ss_pred             eeceEEEEecCCCCEEEEEECCCCcccCEEEEEEcccCCCCc-eEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecC
Confidence            467888875   23  79999999999999999999988775 7789999999999888888889999999999999997


Q ss_pred             CCCCCeEEEeeCCeecCc-----------cccccEEEeecC------eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           83 NPTFQYVTWTKDKRLLEP-----------YQTKDIVVMQNG------SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        83 ~~~~~~v~W~~~~~~~~~-----------~~~~~~~~~~~~------~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      .++++.+.|+|++.....           ....++.+..++      .|.|.++..+|+|.|+|.|.|..|.....  +.
T Consensus       139 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~--~~  216 (585)
T 2ocw_A          139 ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKN--AD  216 (585)
T ss_pred             CCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccce--EE
Confidence            766567999998754210           012344444433      69999999999999999999988875444  44


Q ss_pred             EEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC-CeeEEE-cCCC---ccC---------CcccEEEe----cc
Q psy535          146 VLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK-PTITWQ-RRDG---VAL---------PKNRVKIV----GG  207 (460)
Q Consensus       146 v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~-~~~~W~-~~~~---~~~---------~~~~~~~~----~~  207 (460)
                      |.|..++     |... .+..|+.+.|.|.+.  ...+. +.+.|. +++.   ..+         ...++...    ++
T Consensus       217 l~V~~~~-----p~~~-~~~~G~~v~l~C~~~--~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  288 (585)
T 2ocw_A          217 LQVLKPE-----PELV-YEDLRGSVTFHCALG--PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDG  288 (585)
T ss_pred             EEEccCC-----Ccee-EEcCCCcEEEEEEcC--CCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCc
Confidence            5555443     2222 567899999999972  22223 688996 6431   111         12333332    33


Q ss_pred             --eEEEccccceeceEEEEEEecccceee-----eeeEEEEecCCCC--CCCceeeeeecceEEEEeecCCCCCCCceee
Q psy535          208 --NITIEGLRRVDFGYYECVVSNEVATIV-----QAAQLVVEGTQPH--APYNITGVATEFSVTLEWLPGYSGGPDLKQN  278 (460)
Q Consensus       208 --~l~i~~~~~~~~g~y~C~a~n~~g~~~-----~~~~l~v~~~~p~--~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~  278 (460)
                        .|.|.++...|.|.|+|.|.|. |...     ....|.|..++..  .|..+ ....+..+.|.|..  .+.+.+...
T Consensus       289 ~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~~~~~-~~~~G~~v~l~C~~--~~~p~p~i~  364 (585)
T 2ocw_A          289 SFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRSPTVV-KGVAGSSVAVLCPY--NRKESKSIK  364 (585)
T ss_pred             EEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEecccccccCCcce-EEEeCCcEEEEEec--CCCCCccEE
Confidence              6999999999999999999995 4433     6667777653221  12222 23356678899884  344444322


Q ss_pred             -EEEEEE--ecC--CCC----------eeeeecc---CCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccC
Q psy535          279 -YVIWYR--EQG--NKD----------WLPIPVT---PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG  340 (460)
Q Consensus       279 -~~~~~~--~~~--~~~----------~~~~~~~---~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~  340 (460)
                       ++.|++  ++.  ...          .......   ..+...|.|.++...+.|.|+|.| |..|....+..+.+....
T Consensus       365 ~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~  443 (585)
T 2ocw_A          365 YWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGE  443 (585)
T ss_pred             EEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCc
Confidence             235666  332  000          0011111   112235999999999999999999 988876555556655332


Q ss_pred             CCCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          341 PKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       341 ~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      +....|..+.+. ....+.|.+.......+ ...+.|.|..++.-.....      ....        ...+.... ...
T Consensus       444 p~~~~~~~~~v~-~G~~v~L~C~~~~~~~~-~p~~~v~W~k~g~~~~~~~------~~~~--------~~~~~~~~-~~~  506 (585)
T 2ocw_A          444 PNLKVPGNVTAV-LGETLKVPCHFPCKFSS-YEKYWCKWNNTGCQALPSQ------DEGP--------SKAFVNCD-ENS  506 (585)
T ss_pred             cccccCCceeEe-cCCcEEEEEEecCCCCC-CccEEEEEeecCceeeecc------CCCC--------CcceEEec-Ccc
Confidence            222334443332 24578888876533212 2235677776653110000      0000        00001100 012


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCCCCC
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGDGML  451 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~  451 (460)
                      ....+.|.++.....-.++..|.|..|.+..
T Consensus       507 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  537 (585)
T 2ocw_A          507 RLVSLTLNLVTRADEGWYWCGVKQGHFYGET  537 (585)
T ss_pred             cEEEEEECCCCcccCeEEEEEeEeCCCccEE
Confidence            2357888888888888888999999987643

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=100.00  E-value=5.8e-32  Score=266.83  Aligned_cols=348  Identities=20%  Similarity=0.230  Sum_probs=250.6

Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCC-CCeEEEEEEEcCCCCcceeeEEEEEe-
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN-HQGRYTCTPYNAHGTQGSSGQMEVLV-  148 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~~~~~~g~~~~~~~~~v~v-  148 (460)
                      ..++.|.|.+.|.|.+ .+.|.++|..+...        ..+.+.|..+... .++.|+|.+.+..|.... ..+.+.. 
T Consensus        91 ~g~l~v~c~~~g~P~p-~i~W~k~g~~~~~~--------~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~-~~v~~~~~  160 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLG-NPIWNISGDPTRTW--------NRAELAISTFWPNFYQVIFEVITSGHQGYLAI-DEVKVLGH  160 (731)
T ss_dssp             SEEEEEEEEETTCCCC-SEEEEECCCCCSSC--------EEEEEEECCCTTSCEEEEEEEEECSSCCEEEE-CCBEEESS
T ss_pred             cceEEEEEecCCCCcc-ceeEEEeCCcCCce--------eEEEEEEeecCCCceEEEEEEEecCCceEEEE-eeEEeeec
Confidence            4578999999998876 79999999876421        1123455444222 347788877666665432 2233332 


Q ss_pred             --eCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeE-EEc-CCCccCCcccEE-E----ecceEEEccccceec
Q psy535          149 --RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT-WQR-RDGVALPKNRVK-I----VGGNITIEGLRRVDF  219 (460)
Q Consensus       149 --~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~-W~~-~~~~~~~~~~~~-~----~~~~l~i~~~~~~~~  219 (460)
                        ..+|.+. .+... .+..|+.++|.|.+   .|.|.|.+. |.+ .++..+...... +    ..+.|.|.++...|.
T Consensus       161 ~~~~~p~~~-~~~~~-~v~~G~~v~l~C~~---~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~  235 (731)
T 2v5y_A          161 PCTRTPHFL-RIQNV-EVNAGQFATFQCSA---IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDA  235 (731)
T ss_dssp             CCSSSCEEC-CCCCE-EEETTSCEEEEEEE---ESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTC
T ss_pred             ccccccccc-cccce-EEeCCCcEEEEEEe---CCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccC
Confidence              2566665 44443 78899999999999   799999888 772 244444322211 1    135799999999999


Q ss_pred             eEEEEEEecccce-eeeeeEEEEecCCCCCCCcee-eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeecc
Q psy535          220 GYYECVVSNEVAT-IVQAAQLVVEGTQPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT  297 (460)
Q Consensus       220 g~y~C~a~n~~g~-~~~~~~l~v~~~~p~~p~~~~-~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (460)
                      |.|+|.|.|..|. .+....|.|.. +|.+|.... .......+.|.|.++...+..++..|.+.|+..+ ..|......
T Consensus       236 g~Y~c~A~n~~G~~~s~~~~l~V~~-~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~-~~~~~~~~~  313 (731)
T 2v5y_A          236 GKYRCMIRTEGGVGISNYAELVVKE-PPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTAS-GSWNDRQPV  313 (731)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEEC-CCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESS-SSCEEEEEC
T ss_pred             eEEEEEEECCCCCcceeeEEEEEec-CCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECC-CCceEEecc
Confidence            9999999999998 66667777764 444443332 2345678999999765544455679999998753 456654432


Q ss_pred             CCCCceEEEccCccCccEEEEEEEE--cCCCCCCCCCcEEEEccCCCC-CCCcceEEEeec-ceEEEEecCCCCC--Ccc
Q psy535          298 PPGSTQITINRLTPATTYEFQVVGK--NELGDGMLSNIVVVKTKGPKP-GPPRNVSVTEVN-NGFVISWQPPLER--ASL  371 (460)
Q Consensus       298 ~~~~~~~~i~~l~~~~~~~~~~~a~--n~~G~~~~s~~~~~~~~~~~P-~~p~~~~~~~~~-~~v~l~W~~~~~~--~~~  371 (460)
                        ....+.|.+|.+++.|.|+|.|.  |..|.+.+|..+.+.+....| .+|.++.+...+ +++.|+|++|...  ++.
T Consensus       314 --~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~  391 (731)
T 2v5y_A          314 --DSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCH  391 (731)
T ss_dssp             --CSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEEECCCHHHHCSS
T ss_pred             --CcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEEECCCcccccce
Confidence              45889999999999999999999  999999999989888877655 789999988876 6999999998643  457


Q ss_pred             ceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeee-eccCCCCcceEEECCCCcCceEEEEEEEeecCCCCC
Q psy535          372 IQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP-IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM  450 (460)
Q Consensus       372 i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~  450 (460)
                      +.+|.|+|+..+.-                      ....|.. ..........++|.+|.|++.|.|+|.|.|..|.|+
T Consensus       392 ~~~y~v~y~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~  449 (731)
T 2v5y_A          392 SYNLTVHYCYQVGG----------------------QEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE  449 (731)
T ss_dssp             SCEEEEEEEEESSS----------------------SEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE
T ss_pred             eeeEEEEEEEccCC----------------------CCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC
Confidence            88999999975420                      0001111 112335678899999999999999999999999984


Q ss_pred             CCceeEeecC
Q psy535          451 LSNIVVVKTK  460 (460)
Q Consensus       451 ~s~~~~~~T~  460 (460)
                       |..+.++|.
T Consensus       450 -S~~~~~~T~  458 (731)
T 2v5y_A          450 -SQELIVQTD  458 (731)
T ss_dssp             -CCCEEEECC
T ss_pred             -CceEEEEcc
Confidence             888888773

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=9.2e-34  Score=269.73  Aligned_cols=323  Identities=18%  Similarity=0.181  Sum_probs=221.5

Q ss_pred             CcccCcccceEEEeeCCeEEEeecCCCCCe-eEEEEEEeCCCCcceeeeEEEEe----cCCeeEEcceeeeecceeeEEE
Q psy535            2 NTKVGSLETRVVIKKDGTLVINPVGSDDSG-LYMCEVSNGIGEPQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVV   76 (460)
Q Consensus         2 ~~~~~~~~~r~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l   76 (460)
                      |++....+.|+.+..++.|.|.+++.+|+| .|+|.|.|..+...+..+.|.|.    .+|.+...+....+.+|+++.|
T Consensus       152 ~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L  231 (524)
T 2ec8_A          152 QGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTV  231 (524)
T ss_dssp             SSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEE
T ss_pred             CCcCcCCCCceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEE
Confidence            556667788999988899999999999999 99999999877655667888886    6888888888888999999999


Q ss_pred             EEEEecCCCCCeEEEeeCCeec--CccccccE----EEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC
Q psy535           77 QCHIKANPTFQYVTWTKDKRLL--EPYQTKDI----VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK  150 (460)
Q Consensus        77 ~C~~~~~~~~~~v~W~~~~~~~--~~~~~~~~----~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~  150 (460)
                      .|.+.+.|.+..++|++++..+  .......+    .....+.|.|.++..+|+|.|+|.|.|..|....  .+.|.|..
T Consensus       232 ~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~--~~~l~V~~  309 (524)
T 2ec8_A          232 TCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANV--TTTLEVVD  309 (524)
T ss_dssp             EEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEE--EEEEEEES
T ss_pred             EEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEE--EEEEEEec
Confidence            9999998876559999999873  22111111    1233467999999999999999999998887644  66777778


Q ss_pred             CCceeeCCCc--ccccCCCCeEEEEeeeeccCCCCCCe-eEEEcCCCccCCcc-cEEE--------ecceEEEcccccee
Q psy535          151 PPAFTIKPEA--MYQRKVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVALPKN-RVKI--------VGGNITIEGLRRVD  218 (460)
Q Consensus       151 ~p~~~~~~~~--~~~~~~g~~~~l~C~~~~~~~~p~~~-~~W~~~~~~~~~~~-~~~~--------~~~~l~i~~~~~~~  218 (460)
                      +|.+...+..  ...+..|+.++|.|.+   .+.|.|. +.|++++....... +...        ....|.|.++...|
T Consensus       310 ~p~~~~~~~~~~~~~v~~G~~v~l~C~~---~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  386 (524)
T 2ec8_A          310 KGFINIFPMINTTVFVNDGENVDLIVEY---EAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTE  386 (524)
T ss_dssp             SCEEEEEESSCSEEEECTTCCEEEEEEE---EEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGG
T ss_pred             cCceEeecCCCceEEEcCCCcEEEEEEE---eecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCccc
Confidence            8887766542  3368899999999998   7889998 99999655443332 2221        12479999999999


Q ss_pred             ceEEEEEEecccceeeeeeEEEEecCCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCC-------e
Q psy535          219 FGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD-------W  291 (460)
Q Consensus       219 ~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~-------~  291 (460)
                      .|.|+|.|.|..|.....+.|.|..+ |   ........... .|.|..  .+.|.+.   +.|+++++...       .
T Consensus       387 ~G~Y~C~a~N~~g~~~~~~~l~V~~~-P---~i~~~~~~~~g-~l~C~~--~g~P~p~---i~W~~~~~~~~~~~~~~~~  456 (524)
T 2ec8_A          387 GGTYTFLVSNSDVNAAIAFNVYVNTK-P---EILTYDRLVNG-MLQCVA--AGFPEPT---IDWYFCPGTEQRCSASVLP  456 (524)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEECEE-E---EEEEEECCSSS-CEEEEE--EEESCCE---EECCCC----------CCC
T ss_pred             CeEEEEEEEecCceEEEEEEEEEecC-C---eEeecccCcCc-EEEEEE--EeecCCE---EEEEECCCcccccccccCC
Confidence            99999999999999888888888642 2   22111111112 777763  3445443   67777643210       0


Q ss_pred             ---eeeeccCCCCceEE----EccCccCccEEEEEEEEcCCCCCCCCCcEEEEcc
Q psy535          292 ---LPIPVTPPGSTQIT----INRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  339 (460)
Q Consensus       292 ---~~~~~~~~~~~~~~----i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~  339 (460)
                         ............+.    +......+.|.|+|.|.|.+|....+..+.+...
T Consensus       457 ~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~  511 (524)
T 2ec8_A          457 VDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGN  511 (524)
T ss_dssp             CCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC---
T ss_pred             CCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecC
Confidence               00001111222232    4444468999999999999998777777777644

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=6.9e-34  Score=261.78  Aligned_cols=315  Identities=23%  Similarity=0.384  Sum_probs=228.6

Q ss_pred             ccceEEEeeCCeEEEeec-----CCCCCeeEEEEEEeCC-CCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEe
Q psy535            8 LETRVVIKKDGTLVINPV-----GSDDSGLYMCEVSNGI-GEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK   81 (460)
Q Consensus         8 ~~~r~~~~~~~~L~i~~~-----~~~d~G~Y~C~~~~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~   81 (460)
                      .+.|+.+..+|+|.|.++     +.+|+|.|+|.|.+.. +...+..+.|.|..++.+...+....+.+|+++.|.|.+.
T Consensus        67 ~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~  146 (403)
T 3laf_A           67 MDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVI  146 (403)
T ss_dssp             SCTTEEECTTSCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEE
T ss_pred             CcccEEEecCCcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEc
Confidence            467888888899999988     6789999999999653 4334566788888888887778888899999999999998


Q ss_pred             cCCCCCeEEEeeCCeecCcc-ccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCce------
Q psy535           82 ANPTFQYVTWTKDKRLLEPY-QTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAF------  154 (460)
Q Consensus        82 ~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~------  154 (460)
                      +.|.+ .+.|++++..+... ...+.....++.|.|.++..+|+|.|+|.+.|..+.. .+..+.+.+..+|.+      
T Consensus       147 ~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~~l~v~~~p~~~~~~~~  224 (403)
T 3laf_A          147 GDPMP-TIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTR-TGNEAEVRILSDPGLHRQLYF  224 (403)
T ss_dssp             CSSCC-EEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCC-BCCCEEEEEECCCCCCEEEEE
T ss_pred             ccCCC-eEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCce-eccceeEEEecCCCcccCceE
Confidence            88766 89999999887532 3345555667789999999999999999999987654 233445555555532      


Q ss_pred             eeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEE-ecceEEEccccceeceEEEEEEecccce
Q psy535          155 TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       155 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      ...+... .+..|+.++|.|.+   .+.|.+.+.|++++..... ..+... .+..|.|.++...|.|.|+|.|.|..|.
T Consensus       225 ~~~~~~~-~~~~g~~~~l~C~~---~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  300 (403)
T 3laf_A          225 LQRPSNV-IAIEGKDAVLECCV---SGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNEN  300 (403)
T ss_dssp             EECCCCE-EEETTSCEEECCEE---EEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             ecCCCce-EecCCCcEEEEEEc---CCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCc
Confidence            2334433 57789999999999   6888999999995543322 222322 3567999999999999999999999999


Q ss_pred             eeeeeEEEEecCCC--CCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe-eeeeccCCCCceEEEccC
Q psy535          233 IVQAAQLVVEGTQP--HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-LPIPVTPPGSTQITINRL  309 (460)
Q Consensus       233 ~~~~~~l~v~~~~p--~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l  309 (460)
                      ......+.|..+|.  ..|.... ...+..+.|.|..  .+.+.+.   +.|++++..... .....  .....|.|.++
T Consensus       301 ~~~~~~l~V~~~p~~~~~~~~~~-~~~g~~v~l~C~~--~g~p~p~---v~W~~~g~~~~~~~~~~~--~~~~~L~i~~v  372 (403)
T 3laf_A          301 ISASAELTVLVPPWFLNHPSNLY-AYESMDIEFECAV--SGKPVPT---VNWMKNGDVVIPSDYFQI--VGGSNLRILGV  372 (403)
T ss_dssp             EEEEEEEEEEEEEEEEECCCCEE-CCTTCCEEECCEE--EEESCCE---EEEEETTEECCCSSSEEE--ETTTEEEESSC
T ss_pred             eEEEEEEEEECCCcEeecCcceE-EecCCeEEEEEEE--eeccCCE---EEEEECCEECCCCCcEEE--ecCccEEEecc
Confidence            88888888765321  1222222 2345578888874  3344442   677776542110 00111  13467999999


Q ss_pred             ccCccEEEEEEEEcCCCCCCCCCcEEE
Q psy535          310 TPATTYEFQVVGKNELGDGMLSNIVVV  336 (460)
Q Consensus       310 ~~~~~~~~~~~a~n~~G~~~~s~~~~~  336 (460)
                      ...+.|.|+|.|.|..|....+..+.+
T Consensus       373 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V  399 (403)
T 3laf_A          373 VKSDEGFYQCVAENEAGNAQSSAQLIV  399 (403)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEC
T ss_pred             ccccCEEEEEEEEcCCceEEEEEEEEE
Confidence            999999999999999997655544444

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=1.1e-33  Score=258.97  Aligned_cols=310  Identities=18%  Similarity=0.251  Sum_probs=223.1

Q ss_pred             cceEEEeeCCeEEEeecCCCC------CeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEec
Q psy535            9 ETRVVIKKDGTLVINPVGSDD------SGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA   82 (460)
Q Consensus         9 ~~r~~~~~~~~L~i~~~~~~d------~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~   82 (460)
                      .....+..+|+|.|.+++.+|      +|.|+|.|.|..|...+..+.|.|..+|.+...+....+.+|++++|.|.+.+
T Consensus        50 ~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~  129 (388)
T 2v5m_A           50 PGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPS  129 (388)
T ss_dssp             TTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCT
T ss_pred             CCceEEcCCceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcC
Confidence            334455577899999999997      99999999999887556778888888888777777788899999999999988


Q ss_pred             CCC--CCeEEEeeCCeecCcc---ccccEEEeecCeEEEeecCCCCC-eEEEEEEEcCCCCcce-e-eEEEEEeeCCC--
Q psy535           83 NPT--FQYVTWTKDKRLLEPY---QTKDIVVMQNGSLLFTRVNQNHQ-GRYTCTPYNAHGTQGS-S-GQMEVLVRKPP--  152 (460)
Q Consensus        83 ~~~--~~~v~W~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~-G~y~C~~~~~~g~~~~-~-~~~~v~v~~~p--  152 (460)
                      .+.  .+.+.|++++..+...   ...++....++.|.|.+++.+|+ |.|+|.+.|..+.... + ....+.|..+.  
T Consensus       130 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~  209 (388)
T 2v5m_A          130 FVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS  209 (388)
T ss_dssp             TTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSC
T ss_pred             CCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcC
Confidence            754  2579999998776321   23566667778999999999999 9999999987643321 1 11223344331  


Q ss_pred             ---ceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC------CcccEEEecceEEEccccceeceEEE
Q psy535          153 ---AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL------PKNRVKIVGGNITIEGLRRVDFGYYE  223 (460)
Q Consensus       153 ---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~------~~~~~~~~~~~l~i~~~~~~~~g~y~  223 (460)
                         .+.........+..|+.++|.|.+   .+.|.+.+.|++++....      ...+....++.|.|.++...|.|.|+
T Consensus       210 ~~p~~~~~~~~~~~v~~G~~v~l~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  286 (388)
T 2v5m_A          210 SAPRTPALVQKPLELMVAHTISLLCPA---QGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL  286 (388)
T ss_dssp             EEEECCSSCCCCEEEETTSCEEECCCC---EEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEE
T ss_pred             CCCcCccccCCceEEeeCCcEEEEEEC---CCCCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEE
Confidence               111111111246789999999998   688999999998543221      23344556778999999999999999


Q ss_pred             EEEecccceeeeeeEEEEecCCCC--CCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCC
Q psy535          224 CVVSNEVATIVQAAQLVVEGTQPH--APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS  301 (460)
Q Consensus       224 C~a~n~~g~~~~~~~l~v~~~~p~--~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (460)
                      |.|.|..|.......|.|..++..  .|... ....+..+.|.|..  .+.+.+.   +.|++++...        ....
T Consensus       287 C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~-~v~~g~~~~l~C~~--~g~p~p~---i~W~~~g~~i--------~~~~  352 (388)
T 2v5m_A          287 CVVNNSVGGESVETVLTVTAPLSAKIDPPTQ-TVDFGRPAVFTCQY--TGNPIKT---VSWMKDGKAI--------GHSE  352 (388)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEEEEEEESSEE-EECTTSCEEEEEEE--EEECCCE---EEEEETTEEC--------SCCS
T ss_pred             EEEecCCCceeEEEEEEEeCCCccccCCCcE-EecCCCCEEEEEEe--ccccCCe---EEEEECCEEC--------ccCC
Confidence            999999999888888887653211  11111 22345678888874  3344442   6777764321        1245


Q ss_pred             ceEEEccCccCccEEEEEEEEcCCCCCCCCCcEE
Q psy535          302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVV  335 (460)
Q Consensus       302 ~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~  335 (460)
                      ..|.|.++...+.|.|+|.|.|..|....+..+.
T Consensus       353 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  386 (388)
T 2v5m_A          353 SVLRIESVKKEDKGMYQCFVRNDRESAEASAELK  386 (388)
T ss_dssp             SEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             CEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEE
Confidence            6899999999999999999999999765554443

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=100.00  E-value=3.1e-32  Score=240.79  Aligned_cols=270  Identities=20%  Similarity=0.333  Sum_probs=212.4

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe--ecC--eEEEeecCCCCCeEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--QNG--SLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~~~--~l~i~~~~~~d~G~y~C~  130 (460)
                      .+|.|...|....+.+|++++|.|.+.+.|.+ .++|++++..+.... .++...  .++  .|.|.++..+|+|.|+|.
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~-~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   80 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCC-EEEEEETTEECCCCS-SSEEEEEETTTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCC-eEEEEECCEEcccCC-CeEEEEECCCCEEEEEEccCChhhCeEEEEE
Confidence            46888888888999999999999999998765 899999999886432 233322  233  799999999999999999


Q ss_pred             EEcCCCCcceeeEEEEEeeCCCceeeC-----CCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe
Q psy535          131 PYNAHGTQGSSGQMEVLVRKPPAFTIK-----PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV  205 (460)
Q Consensus       131 ~~~~~g~~~~~~~~~v~v~~~p~~~~~-----~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~  205 (460)
                      |.|..|..  +..+.|.|..+|.+...     +... .+..|+.+.|.|.+   .+.|.+.+.|++++.......++...
T Consensus        81 a~n~~g~~--~~~~~l~V~~~p~~~~~~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~p~i~W~~~~~~~~~~~~~~~~  154 (305)
T 2nzi_A           81 ATNQGGSV--SGTASLEVEVPAKIHLPKTLEGMGAV-HALRGEVVSIKIPF---SGKPDPVITWQKGQDLIDNNGHYQVI  154 (305)
T ss_dssp             EEETTEEE--EEEEEEEECEEEEECCCHHHHSSCCE-EEETTCCEEEEEEE---EEESCCEEEEEESSSBCCSSSSCEEE
T ss_pred             EEcCCCCc--cceEEEEEecCCccCCCccccccccE-EecCCCEEEEEEEE---CCCCCCEEEEEECCEECCCCCcEEEE
Confidence            99988764  44555556555544322     1222 56789999999999   78899999999955544344444432


Q ss_pred             ----cceEEEcc-ccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeE
Q psy535          206 ----GGNITIEG-LRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNY  279 (460)
Q Consensus       206 ----~~~l~i~~-~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~  279 (460)
                          ...|.|.+ +...|.|.|+|.|.|..|.......+.+.. +|.+|..+.. ......+.|+|.++...+..++..|
T Consensus       155 ~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~-~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y  233 (305)
T 2nzi_A          155 VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD-VPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNY  233 (305)
T ss_dssp             ECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEB-CCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEE
T ss_pred             EcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEec-CCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEE
Confidence                34789998 999999999999999999999888888875 5667766654 3567789999998766666667899


Q ss_pred             EEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEE
Q psy535          280 VIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV  335 (460)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~  335 (460)
                      .+.++......|......  ....+.|.+|.+.+.|.|+|.|.|..|.+.+|....
T Consensus       234 ~v~~~~~~~~~w~~~~~~--~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~~  287 (305)
T 2nzi_A          234 IVEKCATTAERWLRVGQA--RETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSE  287 (305)
T ss_dssp             EEEEEETTSCCEEEEEEE--SSSEEEECSCCSSCEEEEEEEEEETTEECCCCCCCC
T ss_pred             EEEEecCCCCccEECccc--cCceEEecCCCCCCeEEEEEEEEeCCcccCCcCCCC
Confidence            999998887888876544  367899999999999999999999999998887654

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=1.7e-34  Score=263.34  Aligned_cols=313  Identities=23%  Similarity=0.343  Sum_probs=215.6

Q ss_pred             cceEEEeeCCeEEEeec-CCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEE-cceeeeecceeeEEEEEEEecCCCC
Q psy535            9 ETRVVIKKDGTLVINPV-GSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF-TPTVQYLPFRLQGVVQCHIKANPTF   86 (460)
Q Consensus         9 ~~r~~~~~~~~L~i~~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~   86 (460)
                      +.|+.+ .+|+|.|.++ +.+|+|.|+|.|.|..|...+....|.|...+.+.. .+....+.+|+.+.|.|.+....+.
T Consensus        54 ~~~~~~-~~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~  132 (384)
T 3kld_A           54 DFRYSV-VDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGE  132 (384)
T ss_dssp             --CEEE-ETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESC
T ss_pred             CccEEE-ECCEEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCC
Confidence            456665 5778888876 789999999999999987656677777765444332 2344677889999999976433333


Q ss_pred             CeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee---eEEEEEe-----eCCCceeeC-
Q psy535           87 QYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS---GQMEVLV-----RKPPAFTIK-  157 (460)
Q Consensus        87 ~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~---~~~~v~v-----~~~p~~~~~-  157 (460)
                      +.+.|++++.++.. ...++....++.|.|.++..+|+|.|+|.|.|..+.....   ..+.+..     ..+|.+... 
T Consensus       133 ~~~~W~~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~  211 (384)
T 3kld_A          133 LSYAWIFNEYPSYQ-DNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQF  211 (384)
T ss_dssp             EEEEEEETTEECCC-SSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEEC
T ss_pred             eEEEEEECCCCCEe-eccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecC
Confidence            47999999988753 2233333456789999999999999999999987653211   1222211     123333332 


Q ss_pred             CCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc-cEEEecceEEEccccceeceEEEEEEecccceeeee
Q psy535          158 PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA  236 (460)
Q Consensus       158 ~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  236 (460)
                      +... .+..|+.+.|.|.+   .|.|.|.+.|++.++..+... +....++.|.|.++..+|+|.|+|.|.|..|.....
T Consensus       212 ~~~~-~~~~G~~v~l~C~~---~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  287 (384)
T 3kld_A          212 PETV-PAEKGTTVKLECFA---LGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAK  287 (384)
T ss_dssp             CSEE-EEETTSCEEEEEEE---EEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCce-EecCCCcEEEEEEE---eecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence            3333 57889999999999   789999999998666555432 222235689999999999999999999999998888


Q ss_pred             eEEEEecCCC--CCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe-eeeeccCCCCceEEEccCccCc
Q psy535          237 AQLVVEGTQP--HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-LPIPVTPPGSTQITINRLTPAT  313 (460)
Q Consensus       237 ~~l~v~~~~p--~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~  313 (460)
                      ..|.|...|.  ..+... ....+..+.|.|..  .+.+.+.   +.|++++..... .....   ....|.|.++...|
T Consensus       288 ~~l~v~~~P~~~~~~~~~-~v~~g~~v~l~C~~--~g~P~p~---i~W~k~g~~l~~~~~~~~---~~~~L~i~~v~~~D  358 (384)
T 3kld_A          288 GQLTFYAQPNWVQIINDI-HVAMEESVFWECKA--NGRPKPT---YRWLKNGDPLLTRDRIQI---EQGTLNITIVNLSD  358 (384)
T ss_dssp             EEEEEEEEEEEEECCCCE-EECTTCCEEEECEE--EEESCCE---EEEEETTEECCCBTTEEE---ETTEEEESSCCGGG
T ss_pred             EEEEEecCCccccCCCce-EecCCCCEEEEeEC--CccCCCe---EEEEECCEECCCCccEEE---eCCEEEEeecChhh
Confidence            8887765321  112222 22345677888874  4445543   678876542111 01111   23479999999999


Q ss_pred             cEEEEEEEEcCCCCCCCCCcEEE
Q psy535          314 TYEFQVVGKNELGDGMLSNIVVV  336 (460)
Q Consensus       314 ~~~~~~~a~n~~G~~~~s~~~~~  336 (460)
                      .|.|+|.|.|..|....+..|.+
T Consensus       359 ~G~Y~C~A~N~~G~~~~~a~L~V  381 (384)
T 3kld_A          359 AGMYQCVAENKHGVIFSSAELSV  381 (384)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEEEEeCCceEEeceEEEE
Confidence            99999999999997666655555

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=2.7e-33  Score=255.76  Aligned_cols=312  Identities=19%  Similarity=0.250  Sum_probs=217.4

Q ss_pred             cceEEEeeCCeEEEeecCC-CCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEE-cceeeeecceeeEEEEEEEec-CCC
Q psy535            9 ETRVVIKKDGTLVINPVGS-DDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF-TPTVQYLPFRLQGVVQCHIKA-NPT   85 (460)
Q Consensus         9 ~~r~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~-~~~   85 (460)
                      +.|+.+ .+++|.|.++.. +|+|.|+|.|.|..|...+..+.|.|..++.+.. .+....+.+|+++.|.|.+.+ .|.
T Consensus        53 ~~~~~~-~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~  131 (382)
T 1cs6_A           53 DSRYRL-VAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPA  131 (382)
T ss_dssp             TSSEEE-ETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESC
T ss_pred             CccEEe-eCCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCC
Confidence            567777 578999999997 9999999999998887555567888876555433 345567889999999999644 444


Q ss_pred             CCeEEEeeCCeecCccccccEEEe-ecCeEEEeecCCCCCeEEEEEEEcCCCCcce---eeEEEEEee------CCCcee
Q psy535           86 FQYVTWTKDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS---SGQMEVLVR------KPPAFT  155 (460)
Q Consensus        86 ~~~v~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~---~~~~~v~v~------~~p~~~  155 (460)
                       +.+.|++++.++......+.... .++.|.|.++..+|+|.|+|.+.|..|....   +..+.+.+.      .+|.+.
T Consensus       132 -~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~  210 (382)
T 1cs6_A          132 -LSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIK  210 (382)
T ss_dssp             -CEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEE
T ss_pred             -cEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCcee
Confidence             48999999887543233333333 3468999999999999999999987653222   122333322      245554


Q ss_pred             eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeee
Q psy535          156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQ  235 (460)
Q Consensus       156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  235 (460)
                      ........+..|+.++|.|.+   .+.|.+.+.|+++++.. .. ........|.|.++...|.|.|+|.|.|..|....
T Consensus       211 ~~~~~~~~~~~G~~v~l~C~~---~g~p~~~i~W~~~~~~~-~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  285 (382)
T 1cs6_A          211 AKFPADTYALTGQMVTLECFA---FGNPVPQIKWRKLDGSQ-TS-KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTY  285 (382)
T ss_dssp             ECCCSEEEEETTCCEEEECEE---EEESCCEEEEEECCSCC-SC-CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             ccCCCceEEeCCCeEEEEEEE---ccCCCCEEEEEECCccc-cc-EEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEE
Confidence            432223367899999999998   68889999999966543 22 22234567999999999999999999999999888


Q ss_pred             eeEEEEecCCC--CCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe-eeeeccCCCCceEEEccCccC
Q psy535          236 AAQLVVEGTQP--HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-LPIPVTPPGSTQITINRLTPA  312 (460)
Q Consensus       236 ~~~l~v~~~~p--~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~  312 (460)
                      ...|.|..+|.  ..+... ....+..+.|.|..  .+.+.+.   +.|++++..... .....   ....|.|.++...
T Consensus       286 ~~~l~V~~~p~~~~~~~~~-~~~~g~~~~l~C~~--~g~p~p~---v~W~~~g~~~~~~~~~~~---~~~~L~i~~v~~~  356 (382)
T 1cs6_A          286 QGRIIIHAQPDWLDVITDT-EADIGSDLRWSCVA--SGKPRPA---VRWLRDGQPLASQNRIEV---SGGELRFSKLVLE  356 (382)
T ss_dssp             EEEEEEEEEEEEEECCCCE-EEETTCCEEEECEE--EEESCCE---EEEEETTEECCCCSSEEE---ETTEEEESSCCGG
T ss_pred             EEEEEEecCCCcccCCCcc-EEcCCCeEEEEEEe--eeecCCE---EEEEECCEECCCCceEEE---ECCEEEECcCCcc
Confidence            88887764321  111111 22345678888874  3344443   677776542111 01111   2347999999999


Q ss_pred             ccEEEEEEEEcCCCCCCCCCcEEE
Q psy535          313 TTYEFQVVGKNELGDGMLSNIVVV  336 (460)
Q Consensus       313 ~~~~~~~~a~n~~G~~~~s~~~~~  336 (460)
                      +.|.|+|.|.|..|....+..+.+
T Consensus       357 d~G~Y~C~a~N~~G~~~~~~~l~V  380 (382)
T 1cs6_A          357 DSGMYQCVAENKHGTVYASAELTV  380 (382)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCEEEEEEEEeCCCeEEEEEEEEE
Confidence            999999999999997655555544

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=9e-32  Score=236.17  Aligned_cols=241  Identities=21%  Similarity=0.358  Sum_probs=192.8

Q ss_pred             CcccCcccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEE
Q psy535            2 NTKVGSLETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQC   78 (460)
Q Consensus         2 ~~~~~~~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C   78 (460)
                      +++....+.|+.+..+|   +|.|.+++.+|+|.|+|.+.|..|...+..+.|.|..+|.+...+....+.+|+.+.|.|
T Consensus        41 ~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C  120 (291)
T 2wim_A           41 QGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVC  120 (291)
T ss_dssp             TCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECC
T ss_pred             CCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEE
Confidence            45556667888888776   899999999999999999999988765677888888888877777777889999999999


Q ss_pred             EEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCC
Q psy535           79 HIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKP  158 (460)
Q Consensus        79 ~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~  158 (460)
                      .+.+.|.+ .+.|++++..+......++....++.|.|.++..+|+|.|+|.+.|..+.......+.+.+..+|.+...+
T Consensus       121 ~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~  199 (291)
T 2wim_A          121 RVSSSPAP-AVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQ  199 (291)
T ss_dssp             CCBCSSCC-EEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSC
T ss_pred             EEccCCCC-EEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCc
Confidence            99988765 79999999888765566777777889999999999999999999998766556667778888888877655


Q ss_pred             Cc-ccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe--cceEEEccccceeceEEEEEEecccceeee
Q psy535          159 EA-MYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQ  235 (460)
Q Consensus       159 ~~-~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  235 (460)
                      .. ...+..|+.+.|.|.+   .+.|.+.+.|++++..+....+....  +..|.|.++...|.|.|+|.|.|..|....
T Consensus       200 ~~~~~~~~~g~~~~l~C~~---~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~  276 (291)
T 2wim_A          200 KSFNATAERGEEMTFSCRA---SGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK  276 (291)
T ss_dssp             SEEECCSSSCCEEEEECBC---CCBSCCEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEE
T ss_pred             ccccceecCCCeEEEEEEe---ecCCCCeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceee
Confidence            42 2357889999999999   78899999999955444444444443  457999999999999999999999999999


Q ss_pred             eeEEEEecCCC
Q psy535          236 AAQLVVEGTQP  246 (460)
Q Consensus       236 ~~~l~v~~~~p  246 (460)
                      +..+.|..+++
T Consensus       277 ~~~l~v~~~~~  287 (291)
T 2wim_A          277 QAFLQVFVQHH  287 (291)
T ss_dssp             EEEEEC-----
T ss_pred             eEEEEEEEecc
Confidence            99998876444

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=1.6e-30  Score=260.64  Aligned_cols=398  Identities=17%  Similarity=0.228  Sum_probs=260.2

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe---cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD   94 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~   94 (460)
                      +.|.|.+++.+|+|.|+|.|.|..|.. .....|.|.   .+|.+...+....+.+|+++.|.|.+.+.|.+ .++|+++
T Consensus       389 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p-~v~W~~~  466 (816)
T 3dmk_A          389 SVLRIESVKKEDKGMYQCFVRNDRESA-EASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTP-EISWELD  466 (816)
T ss_dssp             SEEEESSCCGGGCEEEEEEEECSSCEE-EECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCC-EEEEEET
T ss_pred             CEEEEcCCCHHHCEEEEEEEECCCCcE-EEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCC-EEEEEEC
Confidence            379999999999999999999988764 556677773   57777777777888999999999999998776 8999999


Q ss_pred             CeecCccccccEEE----eecC----eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCC
Q psy535           95 KRLLEPYQTKDIVV----MQNG----SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKV  166 (460)
Q Consensus        95 ~~~~~~~~~~~~~~----~~~~----~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~  166 (460)
                      |..+...  .++..    ..++    .|.|.++..+|+|.|+|.|.|..|...  ..+.|.|..+|.+...+ .. .+..
T Consensus       467 g~~l~~~--~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~p~~~~~~-~~-~v~~  540 (816)
T 3dmk_A          467 GKKIANN--DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE--HSAKLNVYGLPYIRQME-KK-AIVA  540 (816)
T ss_dssp             TEECCSC--TTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEE--EEEEEEECSSCEECCCC-CE-EEET
T ss_pred             CEECCCC--CCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEE--EEEEEEEecCCeeEccC-Ce-EEec
Confidence            9988642  22221    1122    599999999999999999999988754  45566667777554333 22 5778


Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-ecceEEEcccc-ceeceEEEEEEeccccee-eeeeEEEEec
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-VGGNITIEGLR-RVDFGYYECVVSNEVATI-VQAAQLVVEG  243 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~-~~~~g~y~C~a~n~~g~~-~~~~~l~v~~  243 (460)
                      |+.+.|.|.+   .+.|.+.+.|++++.......+... .+++|.|.++. ..|.|.|+|.|.|..|.. .....+.+..
T Consensus       541 G~~v~l~C~~---~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~  617 (816)
T 3dmk_A          541 GETLIVTCPV---AGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV  617 (816)
T ss_dssp             TCCEEEECCE---ECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEEC
T ss_pred             CCeEEEEEEe---cCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEec
Confidence            9999999999   6888899999995544333334433 46789999997 689999999999998853 4455666654


Q ss_pred             CCCCCCCce--eeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCC---eeeeeccCCCCceEEEccCccCccEEEE
Q psy535          244 TQPHAPYNI--TGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD---WLPIPVTPPGSTQITINRLTPATTYEFQ  318 (460)
Q Consensus       244 ~~p~~p~~~--~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~l~~~~~~~~~  318 (460)
                      +|...+...  .....+..++|.|...  +++++  .-+.|++++....   .............|.|.++...+.|.|+
T Consensus       618 ~p~~~~~~~~~~~~~~G~~v~L~C~~~--~~~~~--~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  693 (816)
T 3dmk_A          618 LPRIIPFAFEEGPAQVGQYLTLHCSVP--GGDLP--LNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFT  693 (816)
T ss_dssp             CCCCBCCCCCSSCEESSCEEEEEEBCC--CSSSC--CEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEE
T ss_pred             CCccccccccccccCCCCeEEEEEEEe--CCCCC--CEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEE
Confidence            333222111  1234567899999843  23332  1267777654321   1111112224567999999999999999


Q ss_pred             EEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcc
Q psy535          319 VVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN  398 (460)
Q Consensus       319 ~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~  398 (460)
                      |.|.|..|....+..+.+...+..-..|.+..+.. +..+.|......   .|..  .|.|..++.-       +...  
T Consensus       694 C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~-G~~v~l~C~~~g---~P~p--~i~W~k~~~~-------~~~~--  758 (816)
T 3dmk_A          694 CHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQ-GSDAKVECKADG---FPKP--QVTWKKAVGD-------TPGE--  758 (816)
T ss_dssp             EEEECSSCEEEEEEEECEEEEEEEEECCCCEEEET-TCCEEEECEEEE---ESCC--EEECCEECSS-------STTC--
T ss_pred             EEEEeCCccEEEEEEEEEEeCCceeeecccceecC-CCcEEEEEEEec---CCCC--eEEEEecCCC-------CCcc--
Confidence            99999999776666665543211112333333322 234445444321   1111  2344333210       0000  


Q ss_pred             cccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535          399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV  455 (460)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~  455 (460)
                       +. ........   .     .....+.|.++.....-.+++.|.|..|.+..+-..
T Consensus       759 -~~-~~~~~~~~---~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~  805 (816)
T 3dmk_A          759 -YK-DLKKSDNI---R-----VEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM  805 (816)
T ss_dssp             -CB-CCCCBTTE---E-----EETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEE
T ss_pred             -cc-ccccCCCE---E-----ecCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEE
Confidence             00 00000000   0     012368889999888888899999999987544433

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=3.8e-32  Score=258.61  Aligned_cols=305  Identities=16%  Similarity=0.196  Sum_probs=220.0

Q ss_pred             eCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee-C
Q psy535           16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-D   94 (460)
Q Consensus        16 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~   94 (460)
                      .+++|.|.+++.+|+|.|+|.|.|  |.  +..+.|.|..||.+...+....+.+|++++|.|.+.+.+ .+.++|++ +
T Consensus        78 ~~~~L~I~~~~~~D~G~Y~C~a~n--g~--~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~~v~W~~~~  152 (524)
T 2ec8_A           78 KQNEWITEKAEATNTGKYTCTNKH--GL--SNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPE-VTNYSLKGCQ  152 (524)
T ss_dssp             CSSEEEESSCCSTTCEEEEEEETT--SC--EEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCC-CSCEEEECSS
T ss_pred             ccceEEEcccchhhCEEEEEeecC--Cc--ceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCCc-cceEEEEccC
Confidence            346899999999999999999999  43  677888888877766677778888999999999998855 34799988 7


Q ss_pred             CeecCccccccEEEeecCeEEEeecCCCCCe-EEEEEEEcCCCCcceeeEEEEEee----CCCceeeCCCcccccCCCCe
Q psy535           95 KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQG-RYTCTPYNAHGTQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGES  169 (460)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~g~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~  169 (460)
                      |..+.  ...++....++.|.|.++..+|+| .|+|.|.|..+.. .+..+.|.|.    .+|.+...+... .+..|+.
T Consensus       153 g~~l~--~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~-~s~~~~l~V~~~~~~~p~i~~~~~~~-~v~~G~~  228 (524)
T 2ec8_A          153 GKPLP--KDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSV-LSEKFILKVRPAFKAVPVVSVSKASY-LLREGEE  228 (524)
T ss_dssp             SCCCC--SSCEEEEETTTEEEEESCCGGGTTCEEEEEEC----CC-CCCCEECCEECCCCSCCEEECSCSEE-EEETTSC
T ss_pred             CcCcC--CCCceeECCCccEEEeccchhhCCceEEEEEEECCceE-EEEEEEEEEEeCCCCCCcEEecCCcc-eEEcCCc
Confidence            87775  334555566788999999999999 9999999876654 2334555554    688888877766 7889999


Q ss_pred             EEEEeeeeccCCCCCCe-eEEEcCCCcc-CC-cccE-------EEecceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535          170 VDMHCEAQEAEGTQKPT-ITWQRRDGVA-LP-KNRV-------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       170 ~~l~C~~~~~~~~p~~~-~~W~~~~~~~-~~-~~~~-------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      +.|.|.+   .+.|.+. +.|++++... +. ..+.       ......|.|.++...|.|.|+|.|.|..|.......|
T Consensus       229 v~L~C~~---~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l  305 (524)
T 2ec8_A          229 FTVTCTI---KDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTL  305 (524)
T ss_dssp             EEEEEEE---EESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEE
T ss_pred             EEEEEEE---ecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEE
Confidence            9999999   5778776 9999966542 21 1111       1234579999999999999999999999998888888


Q ss_pred             EEecCCCCCC---C--ceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeee--eeccCC-----CCceEEEc
Q psy535          240 VVEGTQPHAP---Y--NITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLP--IPVTPP-----GSTQITIN  307 (460)
Q Consensus       240 ~v~~~~p~~p---~--~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~i~  307 (460)
                      .|... |...   .  .......+..+.|.|..  .+.+.+.  .+.|++++.......  ......     ....|.|.
T Consensus       306 ~V~~~-p~~~~~~~~~~~~~v~~G~~v~l~C~~--~g~P~p~--~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~  380 (524)
T 2ec8_A          306 EVVDK-GFINIFPMINTTVFVNDGENVDLIVEY--EAFPKPE--HQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLT  380 (524)
T ss_dssp             EEESS-CEEEEEESSCSEEEECTTCCEEEEEEE--EEESCCC--EEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEEC
T ss_pred             EEecc-CceEeecCCCceEEEcCCCcEEEEEEE--eecCCCc--EEEEEECCeeccCCccceeEEccCCCceeEEEEEEe
Confidence            88753 2111   1  01123345678899884  3334331  367777754321111  111111     13579999


Q ss_pred             cCccCccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535          308 RLTPATTYEFQVVGKNELGDGMLSNIVVVK  337 (460)
Q Consensus       308 ~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~  337 (460)
                      ++...+.|.|+|.|.|..|....+..+.+.
T Consensus       381 ~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  410 (524)
T 2ec8_A          381 RLKGTEGGTYTFLVSNSDVNAAIAFNVYVN  410 (524)
T ss_dssp             SCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ecCcccCeEEEEEEEecCceEEEEEEEEEe
Confidence            999999999999999999975555445443

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=8e-32  Score=247.30  Aligned_cols=305  Identities=19%  Similarity=0.236  Sum_probs=208.3

Q ss_pred             eCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE-ecCCCCCeEEEeeC
Q psy535           16 KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI-KANPTFQYVTWTKD   94 (460)
Q Consensus        16 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~v~W~~~   94 (460)
                      .+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|...+.+...+....+.+|+++.|.|.+ .+.|.+ .+.|+++
T Consensus        60 ~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~-~v~W~~~  138 (395)
T 1bih_A           60 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKP-LITWKKR  138 (395)
T ss_dssp             TSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCC-EEEEEEE
T ss_pred             CCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCC-eEEEEec
Confidence            45799999999999999999999988765445566666543323335566778899999999996 666665 8999998


Q ss_pred             CeecCcc-----ccccEEEeecCeEEEeecCCCCCe---EEEEEEEcCCCCcceeeEEEEE-eeC----------CCcee
Q psy535           95 KRLLEPY-----QTKDIVVMQNGSLLFTRVNQNHQG---RYTCTPYNAHGTQGSSGQMEVL-VRK----------PPAFT  155 (460)
Q Consensus        95 ~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G---~y~C~~~~~~g~~~~~~~~~v~-v~~----------~p~~~  155 (460)
                      +....+.     ...++....++.|.|.++..+|+|   .|+|.+.|..+........... +..          +|.+ 
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-  217 (395)
T 1bih_A          139 LSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY-  217 (395)
T ss_dssp             ETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE-
T ss_pred             CCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee-
Confidence            6221111     145666677789999999999999   9999999988875443322211 111          1222 


Q ss_pred             eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc--ccEEEe----cceEEEccccceeceEEEEEEecc
Q psy535          156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK--NRVKIV----GGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~--~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                       .+... .+..|+.+.|.|.+   .+.|.+.+.|++++......  .++...    +..|.|.++...|.|.|+|.|.|.
T Consensus       218 -~~~~~-~~~~G~~v~l~C~~---~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  292 (395)
T 1bih_A          218 -VSKDM-MAKAGDVTMIYCMY---GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNG  292 (395)
T ss_dssp             -ECCSE-EEETTSCEEEEEEE---ECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCS
T ss_pred             -cCCce-EEECCCcEEEEEEe---ccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeC
Confidence             12233 57889999999999   78899999999955433221  222221    227999999999999999999999


Q ss_pred             cceeee-eeEEEEecCCC--CCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEE
Q psy535          230 VATIVQ-AAQLVVEGTQP--HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI  306 (460)
Q Consensus       230 ~g~~~~-~~~l~v~~~~p--~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  306 (460)
                      .|.... ...|.|..+|.  ..|........+..+.|.|...  +.+.+.   +.|++++..........   ....|.|
T Consensus       293 ~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~--g~p~p~---v~W~~~g~~~~~~~~~~---~~~~L~i  364 (395)
T 1bih_A          293 VGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVT--GLPAPN---VVWSHNAKPLSGGRATV---TDSGLVI  364 (395)
T ss_dssp             SSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEE--EESCCC---CEEEETTEECCSSSEEE---ETTEEEE
T ss_pred             CCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEEC--cccCCe---eEEEECCEECCCCceEE---ECCEEEE
Confidence            988655 77777764221  1122212233456788888743  334443   67777654221111111   1238999


Q ss_pred             ccCccCccEEEEEEEEcCCCCCCCCCcEE
Q psy535          307 NRLTPATTYEFQVVGKNELGDGMLSNIVV  335 (460)
Q Consensus       307 ~~l~~~~~~~~~~~a~n~~G~~~~s~~~~  335 (460)
                      .++...+.|.|.|.|.|..|....+..+.
T Consensus       365 ~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~  393 (395)
T 1bih_A          365 KGVKNGDKGYYGCRATNEHGDKYFETLVQ  393 (395)
T ss_dssp             SSCCSTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred             eeCCcccCEEEEEEEEccCCCceEEEEEE
Confidence            99999999999999999999765444443

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=4e-31  Score=232.04  Aligned_cols=235  Identities=20%  Similarity=0.346  Sum_probs=190.9

Q ss_pred             ccCcccceEEEee----CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEE
Q psy535            4 KVGSLETRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCH   79 (460)
Q Consensus         4 ~~~~~~~r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~   79 (460)
                      .+.....|+.+..    +++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|..+|.+...|....+.+|+++.|.|.
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~  123 (291)
T 1qz1_A           44 KLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCD  123 (291)
T ss_dssp             BCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCE
T ss_pred             ECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEE
Confidence            3445567777754    248999999999999999999999876557788889988998888888888999999999999


Q ss_pred             EecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCC
Q psy535           80 IKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE  159 (460)
Q Consensus        80 ~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~  159 (460)
                      +.+.|.+ .+.|++++..+......++....++.|.|.++..+|+|.|+|.+.|..+.......+.|.+..+|.+...+.
T Consensus       124 ~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~  202 (291)
T 1qz1_A          124 VVSSLPP-TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQS  202 (291)
T ss_dssp             EECSSCC-EEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCS
T ss_pred             eccCCCC-EEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCccccccc
Confidence            9998766 799999999886655667777778899999999999999999999876555456677777777887776543


Q ss_pred             c-ccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc----cEEEe--cceEEEccccceeceEEEEEEecccce
Q psy535          160 A-MYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN----RVKIV--GGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       160 ~-~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~----~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      . ...+..|+.+.|.|.+   .+.|.|.+.|++++.......    +....  ...|.|.++...|.|.|+|.|.|..|.
T Consensus       203 ~~~~~~~~g~~v~l~C~~---~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  279 (291)
T 1qz1_A          203 IVNATANLGQSVTLVCDA---DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE  279 (291)
T ss_dssp             EEEEETTSCCCEEEEEEE---EEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             ccccccccCceEEEEEEE---EEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCc
Confidence            2 2357889999999999   688999999999544333221    33332  347999999999999999999999999


Q ss_pred             eeeeeEEEEe
Q psy535          233 IVQAAQLVVE  242 (460)
Q Consensus       233 ~~~~~~l~v~  242 (460)
                      ....+.|.|.
T Consensus       280 ~~~~~~l~V~  289 (291)
T 1qz1_A          280 QDASIHLKVF  289 (291)
T ss_dssp             EEEEEEEEEE
T ss_pred             eEEEEEEEEE
Confidence            8888888775

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.98  E-value=1.1e-31  Score=246.26  Aligned_cols=295  Identities=14%  Similarity=0.135  Sum_probs=183.3

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeE-EcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCee
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT-FTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL   97 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~   97 (460)
                      +|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|..+|.+. ..|  ..+..|+.+.|.|.+.|.|.+ .|+|++++..
T Consensus       104 sL~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~~~~~~p--~~~~~~~~~~L~C~a~G~P~P-~i~W~k~~~~  179 (423)
T 3qs7_E          104 SMVILKMTETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYTLRRP--YFRKMENQDALVCISESVPEP-IVEWVLCDSQ  179 (423)
T ss_dssp             EEEESSCCSSSCSEEEEEEEC--CEE-EEEEEEEEC-----CEEEE--EEEECSSSSCEEEEEEESSCC-EEEEEEC---
T ss_pred             EEEEeecCcccCEEEEEEEEcCCCcE-EEEEEEEEecCccccccCC--cEeccCCceEEEEEEeeecCC-eEEEEECCCC
Confidence            69999999999999999999998875 667888887666543 222  233457778999999999876 8999998875


Q ss_pred             cCcccc-ccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeee
Q psy535           98 LEPYQT-KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEA  176 (460)
Q Consensus        98 ~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~  176 (460)
                      +..... ....+.....+    +...|+|.|+|.|.|..|.... ..+.|.|..+|.+  .+.. ..+..|+.+.|.|.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~----l~~~d~G~Y~C~A~N~~G~~~~-~~~~l~V~~~p~~--~~~~-~~v~~G~~v~L~C~~  251 (423)
T 3qs7_E          180 GESCKEESPAVVKKEEKV----LHELFGTDIRCCARNELGRECT-RLFTIDLNQTPQT--TLPQ-LFLKVGEPLWIRCKA  251 (423)
T ss_dssp             ----------CEEECCSE----ECCCCSSCEEEEEECSSCEEEE-ECEEEESSSCCCS--STTE-EEEETTSCEEEEEEE
T ss_pred             CccccccccccccccceE----EecccCeEEEEEEEcCCCCcce-eeEEEEEecCCcc--CCCc-eEEeCCCeEEEEEEE
Confidence            531100 00001111111    1678999999999999887633 5577777776654  2333 367889999999999


Q ss_pred             eccCC-CCCCeeEEEcCCCccCCcccE----------EEecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCC
Q psy535          177 QEAEG-TQKPTITWQRRDGVALPKNRV----------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ  245 (460)
Q Consensus       177 ~~~~~-~p~~~~~W~~~~~~~~~~~~~----------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~  245 (460)
                         .+ .|.+.+.|++++..+......          ....+.|.|.++...|+|.|+|.|.|.   ......|.|...+
T Consensus       252 ---~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p  325 (423)
T 3qs7_E          252 ---VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKG  325 (423)
T ss_dssp             ---EESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSC
T ss_pred             ---EcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCC
Confidence               55 677999999965543322111          223347999999999999999999998   5566677776432


Q ss_pred             CC--CCC-ceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEE
Q psy535          246 PH--APY-NITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK  322 (460)
Q Consensus       246 p~--~p~-~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~  322 (460)
                      ..  .|. .......+..+.|.|..  .+.|.+.   +.|++++......  .........+........+.|.|.|.|.
T Consensus       326 ~i~~~~~~~~~~v~~G~~v~l~C~~--~g~P~p~---i~W~k~g~~l~~~--~~~~~~~~~~~~~~~~~~D~G~YtC~A~  398 (423)
T 3qs7_E          326 FINATNSSEDYEIDQYEEFCFSVRF--KAYPQIR---CTWTFSRKSFPCE--QKGLDNGYSISKFCNHKHQPGEYIFHAE  398 (423)
T ss_dssp             EEEEC---CEECCCTTCCCCEEEEE--EEESCCE---EEEEETTEEEECB--CCBCSSSSEEEEECCCTTCCSCEEEEEE
T ss_pred             cceEcCCCccEEecCCCeEEEEEEE--EEcCCCe---EEEEECCEECCCc--cccccCCcEEEEEecccccCEEEEEEEE
Confidence            11  111 11112334677888874  3334443   6777765321000  0000012223235567789999999999


Q ss_pred             cCCCCCCCCCcEEEEc
Q psy535          323 NELGDGMLSNIVVVKT  338 (460)
Q Consensus       323 n~~G~~~~s~~~~~~~  338 (460)
                      |..|....+..+.+..
T Consensus       399 N~~G~~~~s~~L~v~~  414 (423)
T 3qs7_E          399 NDDAQFTKMFTLNIRS  414 (423)
T ss_dssp             ETTEEEEEEEEEC---
T ss_pred             cCCceEEEEEEEEEec
Confidence            9999765555555543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.98  E-value=9.4e-30  Score=245.63  Aligned_cols=317  Identities=17%  Similarity=0.263  Sum_probs=219.6

Q ss_pred             ccceEEEeeCC------eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEe
Q psy535            8 LETRVVIKKDG------TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK   81 (460)
Q Consensus         8 ~~~r~~~~~~~------~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~   81 (460)
                      ..+|+++..++      +|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|..++     |....+.+|+++.|.|.+.
T Consensus       169 ~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~-----p~~~~~~~G~~v~l~C~~~  242 (585)
T 2ocw_A          169 YTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN-KKNADLQVLKPE-----PELVYEDLRGSVTFHCALG  242 (585)
T ss_pred             ccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccc-cceEEEEEccCC-----CceeEEcCCCcEEEEEEcC
Confidence            46788888766      79999999999999999999988875 677888887643     3445577899999999984


Q ss_pred             cCCCC-CeEEEe-eCCee---cCc-------cccccEEEee---cC--eEEEeecCCCCCeEEEEEEEcCCCCcce---e
Q psy535           82 ANPTF-QYVTWT-KDKRL---LEP-------YQTKDIVVMQ---NG--SLLFTRVNQNHQGRYTCTPYNAHGTQGS---S  141 (460)
Q Consensus        82 ~~~~~-~~v~W~-~~~~~---~~~-------~~~~~~~~~~---~~--~l~i~~~~~~d~G~y~C~~~~~~g~~~~---~  141 (460)
                      +.+++ +.+.|+ ++|..   +..       ....++....   ++  .|.|.++..+|+|.|+|.|.|. |....   .
T Consensus       243 ~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~  321 (585)
T 2ocw_A          243 PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPI  321 (585)
T ss_pred             CCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCce
Confidence            43322 478997 88732   111       0123333332   34  6999999999999999999985 43321   2


Q ss_pred             eEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCee----EEEc--CCC--ccCC---------cccEEE
Q psy535          142 GQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTI----TWQR--RDG--VALP---------KNRVKI  204 (460)
Q Consensus       142 ~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~----~W~~--~~~--~~~~---------~~~~~~  204 (460)
                      ..+.|.|..+|.+...+... .+..|+.+.|.|.+   .+.|.+.+    .|++  ++.  .+..         ..++.+
T Consensus       322 ~~~~l~V~~~p~~~~~~~~~-~~~~G~~v~l~C~~---~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~  397 (585)
T 2ocw_A          322 QAWQLFVNEESTIPRSPTVV-KGVAGSSVAVLCPY---NRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSL  397 (585)
T ss_pred             eeEEEEEecccccccCCcce-EEEeCCcEEEEEec---CCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEE
Confidence            56677788888887777655 67899999999999   78888877    7988  543  2221         223333


Q ss_pred             e----cce--EEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCC--CCceeeeeecceEEEEeecCCCCCCCce
Q psy535          205 V----GGN--ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHA--PYNITGVATEFSVTLEWLPGYSGGPDLK  276 (460)
Q Consensus       205 ~----~~~--l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~--p~~~~~~~~~~~~~l~w~~~~~~~~~~~  276 (460)
                      .    ++.  |.|.++...|.|.|+|.| |..|.....+.|.|...+|..  |... ....+..+.|.|.......+.+ 
T Consensus       398 ~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~~~~~p-  474 (585)
T 2ocw_A          398 LEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNV-TAVLGETLKVPCHFPCKFSSYE-  474 (585)
T ss_pred             eccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccccCCce-eEecCCcEEEEEEecCCCCCCc-
Confidence            2    233  899999999999999999 888888888888887544432  2222 2345567999998542222222 


Q ss_pred             eeEEEEEEecCCCCee--------eeecc-CCCCceEEEccCccCccEEEEEEEEcCCCCCCCC-CcEEEEc
Q psy535          277 QNYVIWYREQGNKDWL--------PIPVT-PPGSTQITINRLTPATTYEFQVVGKNELGDGMLS-NIVVVKT  338 (460)
Q Consensus       277 ~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s-~~~~~~~  338 (460)
                      ...+.|++++......        ..... ......|.|.++...+.|.|+|.|.|..|.+... ..+.+..
T Consensus       475 ~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~  546 (585)
T 2ocw_A          475 KYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEE  546 (585)
T ss_pred             cEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEe
Confidence            2346788876432110        01111 1123589999999999999999999999876533 4555553

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.98  E-value=5.2e-30  Score=225.60  Aligned_cols=271  Identities=21%  Similarity=0.288  Sum_probs=194.2

Q ss_pred             CCCcccccCCCCeEEEEeeeecc----CCCCCCeeEEEcCCCccCCcccEEEec---ceEEEccccceeceEEEEEEecc
Q psy535          157 KPEAMYQRKVGESVDMHCEAQEA----EGTQKPTITWQRRDGVALPKNRVKIVG---GNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       157 ~~~~~~~~~~g~~~~l~C~~~~~----~~~p~~~~~W~~~~~~~~~~~~~~~~~---~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      .|... .+..|++++|.|.+..+    .+.|.+.+.|+++ +..+...++...+   +.|.|.++...+ |.|.|.|.+.
T Consensus        10 ~P~~~-~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~-g~~i~~~~~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~~~   86 (303)
T 1i1r_A           10 SPESP-VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTN-HFTIPKEQYTIINRTASSVTFTDIASLN-IQLTCNILTF   86 (303)
T ss_dssp             ESSSC-EEETTCCEEEEEEECHHHHHHHTCCGGGEEEEET-TEECCGGGCEEEETTEEEEEECSCCCSE-EEEEEEEEET
T ss_pred             ccCCc-eEeCCCCEEEEEEECCccccccCCChhheEEEEC-CEECChhheeeeCCcEEEEEEcCcCCCc-eEEEEecccC
Confidence            44454 67899999999999310    1458899999995 5555544544433   369999998874 9999999874


Q ss_pred             ccee--eeeeEEEEecCCCCCCCceeeeee-cceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEE
Q psy535          230 VATI--VQAAQLVVEGTQPHAPYNITGVAT-EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI  306 (460)
Q Consensus       230 ~g~~--~~~~~l~v~~~~p~~p~~~~~~~~-~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  306 (460)
                      .+..  .....+.+. .+|.+|.++.+... ...++|+|.++...+. + ..|.++++..+...|.... .......+.|
T Consensus        87 g~~~~~~~~~~l~v~-~~P~~P~~l~~~~~~~~~v~l~W~~~~~~~~-~-~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~i  162 (303)
T 1i1r_A           87 GQLEQNVYGITIISG-LPPEKPKNLSCIVNEGKKMRCEWDGGRETHL-E-TNFTLKSEWATHKFADCKA-KRDTPTSCTV  162 (303)
T ss_dssp             TTEEEEEEEEEEEEE-CCCCCCEEEEEEEETTSCCEEEEECCSCCSS-C-CEEEEEEEETTEECCCEEC-CSSCTTEEEC
T ss_pred             CCcceEEEEEEEecc-CCCCCCeeeEEEECCCCcEEEEccCCCCCCC-C-cCEEEEEEecCCCCccCCC-cCCCceEEEE
Confidence            2222  223344444 47888888876444 3789999998877654 3 6899998865432222221 2235678999


Q ss_pred             ccC-ccCccEEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEee--c-ceEEEEecCCCCCCccceEEEEEEEE
Q psy535          307 NRL-TPATTYEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEV--N-NGFVISWQPPLERASLIQYYLIKYRT  381 (460)
Q Consensus       307 ~~l-~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~--~-~~v~l~W~~~~~~~~~i~~y~i~~~~  381 (460)
                      .+| .+...|.|+|.|.|..|.+.. ..+.+.... .+|.||.++.+...  + +++.|+|++|...++++.+|+|+|+.
T Consensus       163 ~~L~~p~t~Y~f~V~A~N~~G~~~s-~~~~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~y~~  241 (303)
T 1i1r_A          163 DYSTVYFVNIEVWVEAENALGKVTS-DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRT  241 (303)
T ss_dssp             SSCCCTTSCEEEEEEEEETTEEEEC-CCEEECGGGGEECCCCEEEEEECCSSSSSCEEEEEECCGGGGTSCEEEEEEEEE
T ss_pred             CCcCcccccEEEEEEEEcCCCCccc-CCEEECHHHeEecCCCcceEEEEecCCCCEEEEEECCCCCCCcccEEEEEEEEe
Confidence            999 899999999999999998753 334443322 35889999988754  3 68999999998777899999999998


Q ss_pred             cCCeeeeccccCCCCcccccccceecCceeeeeeccC--CCCcceEEECCCCcCceEEEEEEEeecCCCCCCC---ceeE
Q psy535          382 DGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT--PPGSTQITINRLTPATTYEFQVVGKNELGDGMLS---NIVV  456 (460)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s---~~~~  456 (460)
                      .+.                         ..|..+...  ....+.+.|.+|.|++.|.|+|+|.|..|.|++|   +++.
T Consensus       242 ~~~-------------------------~~w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~  296 (303)
T 1i1r_A          242 KDA-------------------------STWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEAS  296 (303)
T ss_dssp             TTC-------------------------SSCEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEE
T ss_pred             CCC-------------------------CCceEEccccCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCccc
Confidence            642                         123332211  2456789999999999999999999999987665   5667


Q ss_pred             eecC
Q psy535          457 VKTK  460 (460)
Q Consensus       457 ~~T~  460 (460)
                      ++|+
T Consensus       297 ~~T~  300 (303)
T 1i1r_A          297 GITY  300 (303)
T ss_dssp             EECC
T ss_pred             eeCC
Confidence            7774

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.98  E-value=4.1e-30  Score=224.67  Aligned_cols=229  Identities=24%  Similarity=0.415  Sum_probs=181.0

Q ss_pred             CcccceEEEee--C-CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcc-eeeeecceeeEEEEEEEe
Q psy535            6 GSLETRVVIKK--D-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP-TVQYLPFRLQGVVQCHIK   81 (460)
Q Consensus         6 ~~~~~r~~~~~--~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~   81 (460)
                      ...+.++++..  + ++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+...+ ....+.+|+.+.|.|.+.
T Consensus        46 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~  124 (284)
T 2rik_A           46 IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG  124 (284)
T ss_dssp             CCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEE
T ss_pred             CcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceE-EEEEEEEccCCCcccccCCCceEecCCceEEEEEEEe
Confidence            33445555432  2 489999999999999999999988774 778899999988876554 345678899999999999


Q ss_pred             cCCCCCeEEEeeCCeecCccccccEEEe-ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCc
Q psy535           82 ANPTFQYVTWTKDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA  160 (460)
Q Consensus        82 ~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~  160 (460)
                      +.|.+ .+.|++++..+......+.... ....|.|.++..+|+|.|+|.+.|..|..  ...+.|.|..+|.+...+..
T Consensus       125 g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~~~~~~~~  201 (284)
T 2rik_A          125 GSPEI-KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA--SSSTSLKVKEPPVFRKKPHP  201 (284)
T ss_dssp             SSSCC-EEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE--EEEEEEEEECCCBCCSCCCC
T ss_pred             eeCCC-EEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCce--eEEEEEEEecCCcceeCCCc
Confidence            88765 7999999998864332222221 22469999999999999999999988764  45667777889988877766


Q ss_pred             ccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEec----ceEEEccccceeceEEEEEEecccceeeee
Q psy535          161 MYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG----GNITIEGLRRVDFGYYECVVSNEVATIVQA  236 (460)
Q Consensus       161 ~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~----~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  236 (460)
                      . .+..|+.++|.|.+   .+.|.+.+.|++++.......+.....    ..|.|.++...|.|.|+|.|.|..|.....
T Consensus       202 ~-~~~~g~~v~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  277 (284)
T 2rik_A          202 V-ETLKGADVHLECEL---QGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCV  277 (284)
T ss_dssp             E-EECTTCCEEEEEEC---BSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             c-eecCCCeEEEEEEE---EecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEE
Confidence            5 67899999999999   788999999999655444444444332    368999999999999999999999999888


Q ss_pred             eEEEEe
Q psy535          237 AQLVVE  242 (460)
Q Consensus       237 ~~l~v~  242 (460)
                      ..|.|.
T Consensus       278 ~~l~V~  283 (284)
T 2rik_A          278 GSITLK  283 (284)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            888774

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.97  E-value=2.5e-31  Score=244.77  Aligned_cols=316  Identities=21%  Similarity=0.282  Sum_probs=217.5

Q ss_pred             ceEEEe-eCCeEEEe----ecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeE-EcceeeeecceeeEEEEEEE-ec
Q psy535           10 TRVVIK-KDGTLVIN----PVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT-FTPTVQYLPFRLQGVVQCHI-KA   82 (460)
Q Consensus        10 ~r~~~~-~~~~L~i~----~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~-~~   82 (460)
                      .|+.+. .+++|.|.    +++.+|+|.|+|.|.|..|...+..+.|.|..+|.+. ..+....+.+|++++|.|.+ .+
T Consensus        64 ~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~  143 (404)
T 3p3y_A           64 PRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPG  143 (404)
T ss_dssp             SSCBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCC
T ss_pred             CcceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCC
Confidence            444443 34577775    8899999999999999988765677888988776543 33455678899999999999 56


Q ss_pred             CCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCC-CeEEEEEEEcCCCCcce-eeEEEEEeeC-------CCc
Q psy535           83 NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNH-QGRYTCTPYNAHGTQGS-SGQMEVLVRK-------PPA  153 (460)
Q Consensus        83 ~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~g~~~~-~~~~~v~v~~-------~p~  153 (460)
                      .|.+ .+.|++++..... ...++....++.|.|.++..+| +|.|+|.+.|..+.... ...+.+.+..       +|.
T Consensus       144 ~p~~-~v~W~~~~~~~~~-~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~  221 (404)
T 3p3y_A          144 LPSP-VIFWMSSSMEPIT-QDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPS  221 (404)
T ss_dssp             SSCC-EEEEECTTSCBCC-CCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCC
T ss_pred             CCCC-eEEEeCCCccccC-CCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCc
Confidence            5554 8999998765433 3456666677899999999999 59999999998775422 2233444432       333


Q ss_pred             eeeCCC--cccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc-cEEEecceEEEccccceeceEEEEEEeccc
Q psy535          154 FTIKPE--AMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKIVGGNITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       154 ~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      +.....  ....+..|+.+.|.|.+   .+.|.+.+.|++++....... .....++.|.|.++...|.|.|+|.|.|..
T Consensus       222 ~~~~~~~~~~~~~~~G~~v~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  298 (404)
T 3p3y_A          222 FMYPQGTASSQMVLRGMDLLLECIA---SGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKM  298 (404)
T ss_dssp             BSSSCSSEEEEEEETTSCEEEECCB---CCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSS
T ss_pred             cccccCCCCCceEecCCCEEEEEEE---CCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCC
Confidence            322211  11247789999999998   788999999999554333222 222235689999999999999999999999


Q ss_pred             ceeeeeeEEEEecCCC--CCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeee-eccCCCCceEEEc
Q psy535          231 ATIVQAAQLVVEGTQP--HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI-PVTPPGSTQITIN  307 (460)
Q Consensus       231 g~~~~~~~l~v~~~~p--~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~  307 (460)
                      |.......|.|..+|.  ..|.... ...+..+.|.|..  .+.+.+.   +.|++++........ .........|.|.
T Consensus       299 g~~~~~~~l~V~~~p~~~~~~~~~~-v~~g~~~~l~C~~--~g~p~p~---v~W~~~g~~~~~~~~~~~~~~~~~~L~i~  372 (404)
T 3p3y_A          299 GSIRHTISVRVKAAPYWLDEPKNLI-LAPGEDGRLVCRA--NGNPKPT---VQWMVNGEPLQSAPPNPNREVAGDTIIFR  372 (404)
T ss_dssp             CEEEEEEEEEEEEEEEEEECCCCEE-ECTTCCEEEECEE--EEESCCE---EEEEETTEEGGGSCCCTTEEEETTEEEES
T ss_pred             CcEEEEEEEEEeCCCeeeccCCcce-eecCCcEEEEEEc--cccCCCc---eEEEECCEecCCCCCCceEEecCCEEEEe
Confidence            9988888888865321  1122222 2235678888874  3344443   677776542111000 0000023579999


Q ss_pred             cCccCccEEEEEEEEcCCCCCCCCCcEEE
Q psy535          308 RLTPATTYEFQVVGKNELGDGMLSNIVVV  336 (460)
Q Consensus       308 ~l~~~~~~~~~~~a~n~~G~~~~s~~~~~  336 (460)
                      ++...+.|.|+|.|.|..|....+..+.+
T Consensus       373 ~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  401 (404)
T 3p3y_A          373 DTQISSRAVYQCNTSNEHGYLLANAFVSV  401 (404)
T ss_dssp             SCCSSCCCEEEEEEEETTEEEEEEEEEEE
T ss_pred             ecCHHHCEEEEEEEEeCCCcEEEEEEEEE
Confidence            99999999999999999997655544443

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.97  E-value=2.8e-31  Score=249.96  Aligned_cols=290  Identities=14%  Similarity=0.136  Sum_probs=193.9

Q ss_pred             EeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEe-cCCCCCeEEEeeCCeecCc
Q psy535           22 INPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK-ANPTFQYVTWTKDKRLLEP  100 (460)
Q Consensus        22 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~v~W~~~~~~~~~  100 (460)
                      +..+..+|+|.|+|.|.|..|......+.|.|..+|.+  .|....+.+|+++.|.|.+. +.|.+ .|+|++++..+..
T Consensus       195 ~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p-~i~W~k~g~~l~~  271 (527)
T 3qs9_E          195 EKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGF-GLTWELENKALEE  271 (527)
T ss_dssp             CSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCC-CEEEECSSSCCCG
T ss_pred             eeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCe-EEEEEECCEECCC
Confidence            33456899999999999999886455577888777665  66678889999999999997 66655 7999999988754


Q ss_pred             cccccE-------EEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCc-ccccCCCCeEEE
Q psy535          101 YQTKDI-------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA-MYQRKVGESVDM  172 (460)
Q Consensus       101 ~~~~~~-------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~-~~~~~~g~~~~l  172 (460)
                      ......       .....++|.|.++..+|+|.|+|.|.|.     .+..+.|.|..+|.+...+.. ...+..|+.+.|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~-----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L  346 (527)
T 3qs9_E          272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH-----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCF  346 (527)
T ss_dssp             GGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE-----EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCE
T ss_pred             CceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC-----CCceEEEEEEccCccccccCcccEEEcCCCeEEE
Confidence            211100       1123346999999999999999999886     455677777778876665532 236788999999


Q ss_pred             EeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCce
Q psy535          173 HCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNI  252 (460)
Q Consensus       173 ~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~  252 (460)
                      .|.+   .|.|.|.+.|++++..+....+.......|.|.++...|+|.|+|.|.|..|.....+.|.|..    +|...
T Consensus       347 ~C~~---~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~----~P~i~  419 (527)
T 3qs9_E          347 SVRF---KAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR----KPQVL  419 (527)
T ss_dssp             EEEE---EEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--C----CCEEE
T ss_pred             EEEE---EecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEec----CCeEE
Confidence            9999   7899999999995443323322223455799999999999999999999999988888887764    22222


Q ss_pred             eeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCC----------Ceeeee---ccCCCCceEEEccCccCccEEEEE
Q psy535          253 TGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK----------DWLPIP---VTPPGSTQITINRLTPATTYEFQV  319 (460)
Q Consensus       253 ~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~i~~l~~~~~~~~~~  319 (460)
                      ...   ....|.|..  .+.|.+.   +.|++..+..          .|....   ..........|.-....+.|.|.|
T Consensus       420 ~~~---~~~~l~C~a--~g~P~p~---i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C  491 (527)
T 3qs9_E          420 AEA---SASQASCFS--DGYPLPS---WTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKC  491 (527)
T ss_dssp             ECC---CCE---EEE--ECSSCCE---EEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEE
T ss_pred             EeC---CCCEEEEEE--EEEcCCe---EEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEE
Confidence            211   123567763  4455543   6676654321          011100   000011223333333568999999


Q ss_pred             EEEcCCCCCCCCCcE
Q psy535          320 VGKNELGDGMLSNIV  334 (460)
Q Consensus       320 ~a~n~~G~~~~s~~~  334 (460)
                      .|.|.+|....+..+
T Consensus       492 ~A~N~~G~~~~~~~L  506 (527)
T 3qs9_E          492 CAYNSLGTSCETILL  506 (527)
T ss_dssp             EEECSSCEEEEEEEC
T ss_pred             EEEeCCCCceeEEEE
Confidence            999999976544444

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.97  E-value=1.9e-30  Score=244.40  Aligned_cols=293  Identities=13%  Similarity=0.114  Sum_probs=184.9

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcce-eeeecceeeEEEEEEEecCCCCCeEEEeeCCee
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPT-VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL   97 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~   97 (460)
                      +|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|.  |.+...+. ......++.+.|.|.+.|.|.+ .|+|++++..
T Consensus       104 SL~I~~v~~~D~G~Y~C~~~n~~~~~-~~~~~v~v~--~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P-~i~W~~~~~~  179 (527)
T 3qs9_E          104 SMVILKMTETQAGEYLLFIQSEATNY-TILFTVSIR--NTLLYTLRRPYFRKMENQDALVCISESVPEP-IVEWVLCDSQ  179 (527)
T ss_dssp             EEEESSCCSSSCSEEEEEEEC--CEE-EEEEEEEEC-------CEEEEEEEECSSSSCEEEEEEESSCC-EEEEEEC---
T ss_pred             EEEECcCChhhCeeEEEEEEeccccE-EEEEEEEEC--CceeeccCCCcEEecCCceEEEEEEceecCC-eEEEEECCCC
Confidence            59999999999999999999987653 334444443  33322222 2223456678899999999877 7999998876


Q ss_pred             cCccccccEEEeecC--eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEee
Q psy535           98 LEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCE  175 (460)
Q Consensus        98 ~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~  175 (460)
                      +....     .....  ......+...|+|.|+|.|.|..|.... ..+.|.|..+|.+  .+... .+..|+.+.|.|.
T Consensus       180 ~~~~~-----~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~-~~~~l~V~~~p~~--~p~~~-~v~~G~~v~L~C~  250 (527)
T 3qs9_E          180 GESCK-----EESPAVVKKEEKVLHELFGTDIRCCARNELGRECT-RLFTIDLNQTPQT--TLPQL-FLKVGEPLWIRCK  250 (527)
T ss_dssp             ---------------CEEECCSEECCCCSSCEEEEEECSSCEEEE-ECEEEESSSCCCC--SCCEE-EECTTSCEEEEEE
T ss_pred             Ccccc-----ccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccc-eEEEEEEeccCcc--CCCce-EEeCCCeEEEEEE
Confidence            53211     01111  1222335588999999999999887643 4567777777765  33333 6889999999999


Q ss_pred             eeccCCCCCCeeEEEcCCCccCCcccE----------EEecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCC
Q psy535          176 AQEAEGTQKPTITWQRRDGVALPKNRV----------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ  245 (460)
Q Consensus       176 ~~~~~~~p~~~~~W~~~~~~~~~~~~~----------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~  245 (460)
                      +.  .+.|.+.+.|++++..+......          ......|.|.++...|+|.|+|.|.|.   ......|.|...+
T Consensus       251 ~~--~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p  325 (527)
T 3qs9_E          251 AV--HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKG  325 (527)
T ss_dssp             EE--ESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--C
T ss_pred             Ec--cCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccC
Confidence            83  38899999999965543322221          122346999999999999999999998   4556666665432


Q ss_pred             C--CCCC-ceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEE
Q psy535          246 P--HAPY-NITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK  322 (460)
Q Consensus       246 p--~~p~-~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~  322 (460)
                      .  ..+. .......+..+.|.|..  .+.|.+.   +.|++++......  .........|.|.++...+.|.|.|.|.
T Consensus       326 ~i~~~~~~~~~~v~~G~~v~L~C~~--~g~P~p~---i~W~k~g~~l~~~--~~~~~~~~~L~I~~v~~~D~G~YtC~A~  398 (527)
T 3qs9_E          326 FINATNSSEDYEIDQYEEFCFSVRF--KAYPQIR---CTWTFSRKSFPCE--QKGLDNGYSISKFCNHKHQPGEYIFHAE  398 (527)
T ss_dssp             EEECCCSCCEECCCTTCCCCEEEEE--EEESCCE---EEEEETTEEEECB--CCBCSSSSEEEEECCCTTCCSCEEEEEE
T ss_pred             ccccccCcccEEEcCCCeEEEEEEE--EecCCCE---EEEEECCEECcCC--cccccCCcEEEEecCCcccCEEEEEEEE
Confidence            1  1111 11122334567777774  3344443   6777764321100  0011245679999999999999999999


Q ss_pred             cCCCCCCCCCcEEE
Q psy535          323 NELGDGMLSNIVVV  336 (460)
Q Consensus       323 n~~G~~~~s~~~~~  336 (460)
                      |..|....+..+.+
T Consensus       399 N~~g~~~~~~~L~V  412 (527)
T 3qs9_E          399 NDDAQFTKMFTLNI  412 (527)
T ss_dssp             ETTEEEEEEEEEC-
T ss_pred             eCCCcEEEEEEEEE
Confidence            99986554444444

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=1.1e-29  Score=241.56  Aligned_cols=315  Identities=14%  Similarity=0.111  Sum_probs=204.7

Q ss_pred             ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCc--ceeeeEEEE----ecCCeeEEcceeeeecceeeEEEEE
Q psy535            8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEP--QAAQAYLNV----EFPAKVTFTPTVQYLPFRLQGVVQC   78 (460)
Q Consensus         8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~l~C   78 (460)
                      .++|+.+..++   +|.|.+++.+|+|.|+|.|.|..|..  ....+.|.|    ..+|.+...+....+.+|+.+.|.|
T Consensus        57 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C  136 (523)
T 2rcj_C           57 VPTRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVC  136 (523)
T ss_pred             cCCcEEEecCCCEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEE
Confidence            35788865443   89999999999999999999987532  234567888    3567777777766677899999999


Q ss_pred             EEecCCCC-CeEEEeeCCeecCcccccc-EEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE--Ee
Q psy535           79 HIKANPTF-QYVTWTKDKRLLEPYQTKD-IVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV--LV  148 (460)
Q Consensus        79 ~~~~~~~~-~~v~W~~~~~~~~~~~~~~-~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v--~v  148 (460)
                      .+.+.+++ ..|+|+|+|..+....... .....+      +.|.|.++..+|+|.|+|.|.|..+.......+.+  .+
T Consensus       137 ~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~  216 (523)
T 2rcj_C          137 LISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSAS  216 (523)
T ss_pred             EeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCC
Confidence            99988654 4899999998875321110 001111      25999999999999999999998876544333221  12


Q ss_pred             eCCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCC-eeEEEcCCCccCC--cccEEE------ecceEEEcccccee
Q psy535          149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKP-TITWQRRDGVALP--KNRVKI------VGGNITIEGLRRVD  218 (460)
Q Consensus       149 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~-~~~W~~~~~~~~~--~~~~~~------~~~~l~i~~~~~~~  218 (460)
                      ..+|.+...+... .+..|+.+.|.|.+   .+. |.| .+.|++++.....  ......      ....|.|.++...|
T Consensus       217 ~~~P~v~~~~~~~-~~~~G~~~~l~C~~---~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d  292 (523)
T 2rcj_C          217 TKGPSVFPLAPSS-KSTSGGTAALGCLV---KDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT  292 (523)
T ss_pred             CcCCEEEecCCCc-ccccCCceEEEEEE---eceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC
Confidence            3455554332222 46789999999998   565 777 8999995543211  011111      12379999999999


Q ss_pred             ceEEEEEEecccceeeeeeEEEEecCCC---CCCCceeeeeecceEEEEeecCCCCCCCc-eeeEEEEEEecCCCCeee-
Q psy535          219 FGYYECVVSNEVATIVQAAQLVVEGTQP---HAPYNITGVATEFSVTLEWLPGYSGGPDL-KQNYVIWYREQGNKDWLP-  293 (460)
Q Consensus       219 ~g~y~C~a~n~~g~~~~~~~l~v~~~~p---~~p~~~~~~~~~~~~~l~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-  293 (460)
                       |.|+|.|.|..|.......+.+...|.   .+|........+..+.|.|...  +.+++ ...-+.|++++....... 
T Consensus       293 -G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~--g~~p~~~~~~v~W~k~g~~l~~~~~  369 (523)
T 2rcj_C          293 -QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVV--DVSHEDPQVKFNWYVDGVQVHNAKT  369 (523)
T ss_pred             -ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEe--cccCCCCceEEEEEECCeEccCCcc
Confidence             999999999999866655554432211   1111111123456788988853  22211 012367888754321110 


Q ss_pred             -e-eccCCC----CceEEEccCccCccEEEEEEEEcCCCCCC
Q psy535          294 -I-PVTPPG----STQITINRLTPATTYEFQVVGKNELGDGM  329 (460)
Q Consensus       294 -~-~~~~~~----~~~~~i~~l~~~~~~~~~~~a~n~~G~~~  329 (460)
                       . .....+    ...|.|..+...+.|.|.|.|.|..|...
T Consensus       370 ~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  411 (523)
T 2rcj_C          370 KPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAP  411 (523)
T ss_pred             CCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCc
Confidence             0 001111    13477888888999999999999877553

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.97  E-value=4.9e-29  Score=217.86  Aligned_cols=270  Identities=21%  Similarity=0.358  Sum_probs=196.8

Q ss_pred             ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee-cCeEEEeecCCCCCeEEEEEEE
Q psy535           54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~y~C~~~  132 (460)
                      ..||.+...|....+.+|++++|.|.+.+.|.+ .++|++++..+......++.... ...|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   81 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPI-KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS   81 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEESSSCC-EEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEcCCCC-EEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEE
Confidence            357888888988899999999999999988765 89999999988753332222222 3479999999999999999999


Q ss_pred             cCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cce
Q psy535          133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGN  208 (460)
Q Consensus       133 ~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~  208 (460)
                      |..|..  +..+.|.|..+|.+...+.....+..|+.+.|.|.+   .+.|.+.+.|++++.......+....    ...
T Consensus        82 n~~g~~--~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  156 (284)
T 2rik_A           82 NVAGKD--SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI---GGSPEIKVLWYKDETEIQESSKFRMSFVESVAV  156 (284)
T ss_dssp             ETTEEE--EEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEE---ESSSCCEEEEEETTEECCCSSSEEEEEETTEEE
T ss_pred             ECCceE--EEEEEEEccCCCcccccCCCceEecCCceEEEEEEE---eeeCCCEEEEEECCEECcCCCcEEEEEcCCEEE
Confidence            987764  556667778888877766554467899999999999   68899999999965544444433322    346


Q ss_pred             EEEccccceeceEEEEEEecccceeeeeeEEEEecCCCC--CCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEec
Q psy535          209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH--APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ  286 (460)
Q Consensus       209 l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~--~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~  286 (460)
                      |.|.++...|.|.|+|.+.|..|.......|.|..+|..  .|... ....+..+.|.|..  .+.+.+.   +.|++++
T Consensus       157 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~-~~~~g~~v~l~C~~--~g~p~~~---v~W~~~~  230 (284)
T 2rik_A          157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV-ETLKGADVHLECEL--QGTPPFQ---VSWHKDK  230 (284)
T ss_dssp             EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCE-EECTTCCEEEEEEC--BSSSCCE---EEEEETT
T ss_pred             EEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcc-eecCCCeEEEEEEE--EecCCCE---EEEEECC
Confidence            999999999999999999999999888888888753221  12222 22345678999884  3444443   6777764


Q ss_pred             CCC---CeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEE
Q psy535          287 GNK---DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV  336 (460)
Q Consensus       287 ~~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~  336 (460)
                      ...   ...... .......|.|.++...+.|.|.|.|.|..|....+..+.+
T Consensus       231 ~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  282 (284)
T 2rik_A          231 RELRSGKKYKIM-SENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL  282 (284)
T ss_dssp             EEECBTTTEEEE-EETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EECcCCCCEEEE-EcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEE
Confidence            321   101111 1113357899999999999999999999997654444443

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.97  E-value=4.6e-30  Score=232.44  Aligned_cols=267  Identities=16%  Similarity=0.123  Sum_probs=193.0

Q ss_pred             cccceEEEee------CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE
Q psy535            7 SLETRVVIKK------DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI   80 (460)
Q Consensus         7 ~~~~r~~~~~------~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~   80 (460)
                      ...+|+.+..      +++|.|.+++.+|+|.|+|.|.|..     ..+.|.|..   +...|. ..+.+|++++|.|.+
T Consensus        50 ~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~-----~~~~l~V~~---~~~~~~-~~v~~G~~v~l~C~~  120 (363)
T 1wio_A           50 KLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQK-----EEVQLLVFG---LTANSD-THLLQGQSLTLTLES  120 (363)
T ss_dssp             TTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEEEEETTEE-----EEEEEEEEE---EEESSC-SSEESBSCEEEEEEC
T ss_pred             ccccceeeeeccccCCeEEEEECCCCHHHCEEEEEEEEECC-----CcEEEEEEe---CCCCCc-eEEecCCCEEEEEEc
Confidence            3467887754      4589999999999999999999863     356677763   334443 456789999999999


Q ss_pred             ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCc
Q psy535           81 KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA  160 (460)
Q Consensus        81 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~  160 (460)
                      .+.|.+ .++|++++..+.         ...+.|.|.++..+|+|.|+|.|.|..+..  ...+.|.|..+|...   . 
T Consensus       121 ~~~p~~-~v~W~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~--~~~~~l~v~~~p~~~---~-  184 (363)
T 1wio_A          121 PPGSSP-SVQCRSPRGKNI---------QGGKTLSVSQLELQDSGTWTCTVLQNQKKV--EFKIDIVVLAFQKAS---S-  184 (363)
T ss_dssp             CTTCCC-CEEEECSSSCEE---------EESSEEEECSBCGGGCEECEEEEEETTEEE--EECCEECEECCSCSE---E-
T ss_pred             CCCCCC-eEEEEcCCCccc---------ccceEEEEeeCChhcCCEEEEEEecCCCeE--EEEEEEEEecCCCCC---C-
Confidence            887665 799999886542         356789999999999999999999875443  444555555565433   2 


Q ss_pred             ccccCCCCeEEEEeeeeccCC-----CCCCeeEEEcCCCccCC--------cccEEE------------e--cceEEEcc
Q psy535          161 MYQRKVGESVDMHCEAQEAEG-----TQKPTITWQRRDGVALP--------KNRVKI------------V--GGNITIEG  213 (460)
Q Consensus       161 ~~~~~~g~~~~l~C~~~~~~~-----~p~~~~~W~~~~~~~~~--------~~~~~~------------~--~~~l~i~~  213 (460)
                      ...+..|+.+.|.|.+   .+     .|.|.+.|++++.....        ..++..            .  ...|.|.+
T Consensus       185 ~~~~~~G~~v~l~C~~---~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  261 (363)
T 1wio_A          185 IVYKKEGEQVEFSFPL---AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQ  261 (363)
T ss_dssp             EEEEETBCCEEEECCC---CCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESS
T ss_pred             ceEEecCCEEEEEEEE---ecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEcc
Confidence            2357789999999988   45     77889999995544333        233333            1  23799999


Q ss_pred             ccceeceEEEEEEecc--cceeeeeeEEEEecCCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe
Q psy535          214 LRRVDFGYYECVVSNE--VATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW  291 (460)
Q Consensus       214 ~~~~~~g~y~C~a~n~--~g~~~~~~~l~v~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (460)
                      +...|+|.|+|.|.|.  .|.....+.|.|... +           +..+.|.|...  +.+++. -.+.|++++.... 
T Consensus       262 v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v-~-----------g~~~~l~C~~~--g~p~p~-~~i~W~~~~~~~~-  325 (363)
T 1wio_A          262 ALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA-T-----------QLQKNLTCEVW--GPTSPK-LMLSLKLENKEAK-  325 (363)
T ss_dssp             BCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEE-C-----------CCSSSEEEEEE--SSCCTT-CCEEEECSSSSCS-
T ss_pred             CCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEe-c-----------CCCeeEEEEEc--cccCCC-ccEEEEeCCCcee-
Confidence            9999999999999999  898888888877631 1           34466777642  223321 1256777654321 


Q ss_pred             eeeeccCCCCceEEEccCccCccEEEEEEEEcCC
Q psy535          292 LPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL  325 (460)
Q Consensus       292 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~  325 (460)
                              ....+.|.++...+.|.|+|.|.|..
T Consensus       326 --------~~~~l~i~~v~~~d~G~Y~C~a~~~~  351 (363)
T 1wio_A          326 --------VSKREKAVWVLNPEAGMWQCLLSDSG  351 (363)
T ss_dssp             --------EEESSSEEEESSCCSEEEEEEECSSS
T ss_pred             --------eeeeeeeeeeccccceeEEEEEecCC
Confidence                    12346778899999999999999753

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.97  E-value=1e-29  Score=231.76  Aligned_cols=223  Identities=26%  Similarity=0.428  Sum_probs=172.3

Q ss_pred             ceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcc--eeeeEEEEe-------cCCeeE-EcceeeeecceeeEEEEEE
Q psy535           10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQ--AAQAYLNVE-------FPAKVT-FTPTVQYLPFRLQGVVQCH   79 (460)
Q Consensus        10 ~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~~l~v~-------~~p~~~-~~~~~~~~~~g~~~~l~C~   79 (460)
                      .++....+|.|.|.+++.+|+|.|+|.|.|..+...  .....+.+.       .+|.+. ..|....+.+|+++.|.|.
T Consensus       149 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~  228 (384)
T 3kld_A          149 RRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECF  228 (384)
T ss_dssp             SEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEE
T ss_pred             cEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEE
Confidence            334434457999999999999999999999876531  112223332       123332 3456677888999999999


Q ss_pred             EecCCCCCeEEEeeC-CeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCC
Q psy535           80 IKANPTFQYVTWTKD-KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKP  158 (460)
Q Consensus        80 ~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~  158 (460)
                      +.|.|.+ .+.|+++ +..+..   .......++.|.|.++..+|+|.|+|.|.|..|.......  |.|..+|.+...+
T Consensus       229 ~~g~P~p-~i~W~k~~~~~~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~--l~v~~~P~~~~~~  302 (384)
T 3kld_A          229 ALGNPVP-TILWRRADGKPIAR---KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQ--LTFYAQPNWVQII  302 (384)
T ss_dssp             EEEESCC-EEEEEETTCCCCCT---TCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEE--EEEEEEEEEEECC
T ss_pred             EeecCCC-cEEEEeCCCccccc---cceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEE--EEEecCCccccCC
Confidence            9998876 7999995 444432   2222334568999999999999999999999988655544  4555578777766


Q ss_pred             CcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535          159 EAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ  238 (460)
Q Consensus       159 ~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~  238 (460)
                      ... .+..|+.+.|.|.+   .|.|.|.+.|++++..+....++...++.|.|.++...|+|.|+|.|.|..|....+..
T Consensus       303 ~~~-~v~~g~~v~l~C~~---~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~  378 (384)
T 3kld_A          303 NDI-HVAMEESVFWECKA---NGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAE  378 (384)
T ss_dssp             CCE-EECTTCCEEEECEE---EEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             Cce-EecCCCCEEEEeEC---CccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEEEEEEEeCCceEEeceE
Confidence            665 68899999999999   78999999999966555556677778889999999999999999999999999999988


Q ss_pred             EEEe
Q psy535          239 LVVE  242 (460)
Q Consensus       239 l~v~  242 (460)
                      |.|.
T Consensus       379 L~V~  382 (384)
T 3kld_A          379 LSVI  382 (384)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8875

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.97  E-value=1.5e-29  Score=232.79  Aligned_cols=229  Identities=25%  Similarity=0.483  Sum_probs=187.4

Q ss_pred             cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe------eEEcceeeeecceeeEEEEEEE
Q psy535            7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK------VTFTPTVQYLPFRLQGVVQCHI   80 (460)
Q Consensus         7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~------~~~~~~~~~~~~g~~~~l~C~~   80 (460)
                      ....++.+..+++|.|.+++.+|+|.|+|.|.|..+...+..+.|.|..+|.      +...+....+.+|++++|.|.+
T Consensus       166 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~  245 (403)
T 3laf_A          166 PGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV  245 (403)
T ss_dssp             TTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEE
T ss_pred             CCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEc
Confidence            4456777777889999999999999999999998877556678888876553      3445666778899999999999


Q ss_pred             ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCc
Q psy535           81 KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA  160 (460)
Q Consensus        81 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~  160 (460)
                      .+.|.+ .+.|++++..+.. ...+.....++.|.|.++..+|+|.|+|.|.|..|..  +..+.|.|..+|.+...+..
T Consensus       246 ~~~p~~-~~~W~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~~~~~~~~  321 (403)
T 3laf_A          246 SGYPPP-SFTWLRGEEVIQL-RSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENI--SASAELTVLVPPWFLNHPSN  321 (403)
T ss_dssp             EEESCC-EEEEEETTEECCC-SSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEE--EEEEEEEEEEEEEEEECCCC
T ss_pred             CCCCCC-eEEEEECCeeccC-CCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCce--EEEEEEEEECCCcEeecCcc
Confidence            998776 7999999998764 3345555667789999999999999999999988765  44555666678888877776


Q ss_pred             ccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe-cceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535          161 MYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       161 ~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      . .+..|+.++|.|.+   .+.|.+.+.|++++.......+.... ++.|.|.++...|.|.|+|.|.|..|.......|
T Consensus       322 ~-~~~~g~~v~l~C~~---~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  397 (403)
T 3laf_A          322 L-YAYESMDIEFECAV---SGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQL  397 (403)
T ss_dssp             E-ECCTTCCEEECCEE---EEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             e-EEecCCeEEEEEEE---eeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEE
Confidence            5 68899999999999   78899999999966555455554443 5679999999999999999999999999999988


Q ss_pred             EEec
Q psy535          240 VVEG  243 (460)
Q Consensus       240 ~v~~  243 (460)
                      .|..
T Consensus       398 ~V~~  401 (403)
T 3laf_A          398 IVPK  401 (403)
T ss_dssp             ECCC
T ss_pred             EEeC
Confidence            8875

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.97  E-value=6.5e-30  Score=226.54  Aligned_cols=223  Identities=16%  Similarity=0.187  Sum_probs=174.1

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCee
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL   97 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~   97 (460)
                      ++|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+...+....+..++.+.+.|.+.+..+++.+.|++++..
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~  158 (313)
T 4fqp_A           79 ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGG  158 (313)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCC
T ss_pred             eEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcc
Confidence            57999999999999999999765444446777888888888777777677778888999998764433448999999887


Q ss_pred             cCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEE
Q psy535           98 LEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVD  171 (460)
Q Consensus        98 ~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~  171 (460)
                      +...  .......+      +.|.|.++..+|+|.|+|.|.|..+.......+.|.|..+|.+.+.+.....+..|+.++
T Consensus       159 ~~~~--~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~  236 (313)
T 4fqp_A          159 MPNT--SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEAT  236 (313)
T ss_dssp             EEEE--EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEE
T ss_pred             cccc--ceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEE
Confidence            6421  11111112      248888999999999999999988877777788888888888876665544567889999


Q ss_pred             EEeeeeccCCCCCC-eeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCC
Q psy535          172 MHCEAQEAEGTQKP-TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPH  247 (460)
Q Consensus       172 l~C~~~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~  247 (460)
                      |.|.+   .|.|.| .+.|+++++ .+.. .....+++|.|.++...|+|.|+|.|.|..|....++.|.|...||.
T Consensus       237 l~C~~---~g~P~p~~v~W~~~~~-~l~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP~  308 (313)
T 4fqp_A          237 LTCDA---RSNPEPTGYNWSTTMG-PLPP-FAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPPH  308 (313)
T ss_dssp             EEEEE---EEESCCCEEEEEETTB-SCCT-TEEEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC--
T ss_pred             EEEEe---cCCCCCcEEEEEECCE-ECCC-ceEEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCCC
Confidence            99999   788888 699999554 4432 23446778999999999999999999999999999999999876554

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.97  E-value=5.5e-29  Score=232.31  Aligned_cols=277  Identities=15%  Similarity=0.188  Sum_probs=189.5

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeE-EcceeeeecceeeEEEEEEEecCCCCC--eEEEeeCC
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT-FTPTVQYLPFRLQGVVQCHIKANPTFQ--YVTWTKDK   95 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~--~v~W~~~~   95 (460)
                      .|.|.+++. |+| |+|.|.+..+. .+..+.|.|..+|.+. ..+....+.+|+++.|.|.+.+.++++  .|+|+|++
T Consensus        51 ~l~i~~v~~-d~g-Y~C~a~~~~~~-~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g  127 (450)
T 1z7z_I           51 VYELSNVQE-DSQ-PMCYSNCPDGQ-STAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE  127 (450)
T ss_dssp             EEEEEEECS-CBC-CEEEEEETTEE-EEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETT
T ss_pred             EEEEEeccc-CCe-eEEEEeCCCCc-ceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCC
Confidence            799999987 999 99999765444 3677889998877765 566777889999999999999987654  79999999


Q ss_pred             eecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcce------eeEEEEEeeCC----CceeeCCCcccccC
Q psy535           96 RLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS------SGQMEVLVRKP----PAFTIKPEAMYQRK  165 (460)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~------~~~~~v~v~~~----p~~~~~~~~~~~~~  165 (460)
                      ..+.....  .....++.|.|.++..+|+|.|+|.|.|..|....      +....+.+...    |.+.. +   ..+.
T Consensus       128 ~~l~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~-~---~~v~  201 (450)
T 1z7z_I          128 KELKREPA--VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS-P---RVLE  201 (450)
T ss_dssp             EEEEEEEC--CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC-C---SEEE
T ss_pred             EEeecccc--cccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC-c---eeEE
Confidence            98863221  11122357999999999999999999998764321      12233334322    32221 1   2678


Q ss_pred             CCCeEEEEeeeeccCCC-C--CCeeEEEcCCCccCCcccEEEecceEEEc---cccceece--EEEEEEecccceeeeee
Q psy535          166 VGESVDMHCEAQEAEGT-Q--KPTITWQRRDGVALPKNRVKIVGGNITIE---GLRRVDFG--YYECVVSNEVATIVQAA  237 (460)
Q Consensus       166 ~g~~~~l~C~~~~~~~~-p--~~~~~W~~~~~~~~~~~~~~~~~~~l~i~---~~~~~~~g--~y~C~a~n~~g~~~~~~  237 (460)
                      .|+.+.|.|.+   .+. |  .+.+.|++++. .+.. +.......+.+.   ++...|.|  .|+|.+.|..|......
T Consensus       202 ~G~~v~l~C~~---~g~~P~~~~~~~W~~~~~-~~~~-~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~  276 (450)
T 1z7z_I          202 VDTQGTVVCSL---DGLFPVSEAQVHLALGDQ-RLNP-TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ  276 (450)
T ss_dssp             TTSEEEEEEEE---ESCTTGGGCEEEEEETTE-ECCC-EEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEE
T ss_pred             eCCcEEEEEEe---eCCCCCCceEEEEeCCCE-eCCc-eEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEE
Confidence            89999999999   566 6  78999999554 3333 344344333332   66889999  99999999999988888


Q ss_pred             EEEEecCCCCCCCcee---eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCcc
Q psy535          238 QLVVEGTQPHAPYNIT---GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATT  314 (460)
Q Consensus       238 ~l~v~~~~p~~p~~~~---~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  314 (460)
                      .|.|...++  |....   ....+..++|.|...    +.+.   +.|  ++...     . .......|.|..+...+.
T Consensus       277 ~l~V~~~~~--p~i~~~~~~v~~G~~v~l~C~~~----p~p~---i~W--~g~~~-----~-~~~~~~~L~i~~~~~~d~  339 (450)
T 1z7z_I          277 TVTIYSFPA--PNVILTKPEVSEGTEVTVKCEAH----PRAK---VTL--NGVPA-----Q-PLGPRAQLLLKATPEDNG  339 (450)
T ss_dssp             EEEEECCCC--CEEEESCSEEETTCEEEEEEEC-------------------------------CCCCCEEEECCGGGTT
T ss_pred             EEEEecCCC--CeEecCCeeEeCCCcEEEEEecC----CCCE---eEE--CCEEc-----C-CCCceEEEEEecCcccCC
Confidence            888875332  22211   234566889999853    3222   344  22211     0 111345799999999999


Q ss_pred             EEEEEEEEcCCC
Q psy535          315 YEFQVVGKNELG  326 (460)
Q Consensus       315 ~~~~~~a~n~~G  326 (460)
                      |.|.|.|.|..|
T Consensus       340 G~Y~C~a~n~~~  351 (450)
T 1z7z_I          340 RSFSCSATLEVA  351 (450)
T ss_dssp             CEEEEEEEEEET
T ss_pred             ceEEEEEEcCCC
Confidence            999999997665

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.97  E-value=1.3e-28  Score=217.68  Aligned_cols=264  Identities=19%  Similarity=0.253  Sum_probs=188.9

Q ss_pred             ccCCCCeEEEEeeeeccCCC-----CCCeeEEEcCCCccCCcccEE-Eec----ceEEEccccceeceEEEEEEecccce
Q psy535          163 QRKVGESVDMHCEAQEAEGT-----QKPTITWQRRDGVALPKNRVK-IVG----GNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~-----p~~~~~W~~~~~~~~~~~~~~-~~~----~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      .+..|++++|.|.+   .+.     |.+.+.|++++. .+...+.. ..+    +.|.|.++...|+|.|.|.+.+..+.
T Consensus        11 ~v~~G~~v~l~C~~---~~~~~~~~~~~~i~W~~~g~-~l~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~   86 (313)
T 2d9q_B           11 IVHLGDPITASCII---KQNCSHLDPEPQILWRLGAE-LQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQ   86 (313)
T ss_dssp             EECTTCCEEEEECC---CTTSCSSCSCSCCEEESSSC-BCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEE
T ss_pred             EEcCCCCEEEEEEE---CCCCCCCCcccceEEEeCCE-ECCccceEEEecCeEEEEEEEeccCCCccceEEeeecCCCce
Confidence            57899999999998   454     578999999544 44433222 122    46999999999999999999776555


Q ss_pred             eeeeeEEEEecCCCCCCCceeeeee--cceEEEEeecCCCCCCCceeeEEEEEEecCC------CCeeeeeccCCCCceE
Q psy535          233 IVQAAQLVVEGTQPHAPYNITGVAT--EFSVTLEWLPGYSGGPDLKQNYVIWYREQGN------KDWLPIPVTPPGSTQI  304 (460)
Q Consensus       233 ~~~~~~l~v~~~~p~~p~~~~~~~~--~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  304 (460)
                      ......|.+. .+|.+|.++.+...  ...++++|.++.+++.+  ..|.+.++....      ..|..... ......+
T Consensus        87 ~~~~~~l~v~-~~P~~P~~l~c~~~~~~~~~~~~W~~~~~~~~~--~~Y~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  162 (313)
T 2d9q_B           87 ILDQVELRAG-YPPAIPHNLSCLMNLTTSSLICQWEPGPETHLP--TSFTLKSFKSRGNCQTQGDSILDCVP-KDGQSHC  162 (313)
T ss_dssp             EEEEEEEEEC-CCCCCCEEEEEEEETTTTEEEEEEECCSCCSSC--CEEEEEEEECCTTSCSCCCCEEEECC-CTTCSEE
T ss_pred             eEEEEEEccC-CCCCCCccceeeECCCCccEEEEecCCCCCCCc--eeEEEEEEecCCCcccCCcccccCCC-CCCCcEE
Confidence            4455666665 47888988876554  47999999988775543  469998876542      12332221 1133455


Q ss_pred             EEc--cCccCccEEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEee-------cceEEEEecCCCCCCccceE
Q psy535          305 TIN--RLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEV-------NNGFVISWQPPLERASLIQY  374 (460)
Q Consensus       305 ~i~--~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~-------~~~v~l~W~~~~~~~~~i~~  374 (460)
                      .+.  +|.+...|.|+|.|.|..|.+. +..+.+.+.. .+|.||.++.+...       .+++.|+|++|...+..+++
T Consensus       163 ~~~~~~L~~~~~Y~f~V~A~N~~G~~~-s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~~~~~~~l~  241 (313)
T 2d9q_B          163 SIPRKHLLLYQNMGIWVQAENALGTSM-SPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQK  241 (313)
T ss_dssp             EEEGGGCCSSSCEEEEEEEEETTEEEE-CCCEEECGGGGEECCCCEEEECCC-------CCSCEEEEEECCGGGTTSCEE
T ss_pred             EECccccccceeEEEEEEEECCCCCcc-CccEEEehhheeccCcCceeEEEEecccccCCCCeEEEEECCCCCCCceeEE
Confidence            554  5999999999999999999763 4455565544 34889999988764       36899999998765555789


Q ss_pred             EEEEEE-EcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCC---
Q psy535          375 YLIKYR-TDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM---  450 (460)
Q Consensus       375 y~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~---  450 (460)
                      |+|+|+ ..+.                         ..|..+.......+.+.|.+|.|++.|.|||+|.|..|.|.   
T Consensus       242 Y~v~y~~~~~~-------------------------~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~  296 (313)
T 2d9q_B          242 CELRHKPQRGE-------------------------ASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSD  296 (313)
T ss_dssp             EEEEEEESSSC-------------------------CCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCC
T ss_pred             EEEEEccCCCC-------------------------CCcEEcccccCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCC
Confidence            999999 4322                         12333322234567899999999999999999999987765   


Q ss_pred             CCceeEeecC
Q psy535          451 LSNIVVVKTK  460 (460)
Q Consensus       451 ~s~~~~~~T~  460 (460)
                      +|+++.++|.
T Consensus       297 wS~~~~~~T~  306 (313)
T 2d9q_B          297 WSPSLELRTT  306 (313)
T ss_dssp             CCCCEEECCC
T ss_pred             CCCccceeCC
Confidence            6677777774

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.97  E-value=2.4e-29  Score=221.94  Aligned_cols=217  Identities=25%  Similarity=0.460  Sum_probs=169.7

Q ss_pred             eEEEeecCC-CCCeeEEEEEEeCCCCcceeeeEEEEecC-------CeeEEcceeeeecceeeEEEEEEEecCCCCCeEE
Q psy535           19 TLVINPVGS-DDSGLYMCEVSNGIGEPQAAQAYLNVEFP-------AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVT   90 (460)
Q Consensus        19 ~L~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~   90 (460)
                      .|.|.+++. +|+|.|+|.|.|..|.. +..+.|.|..+       |.+...|....+.+|+++.|.|.+.+.|.+ .+.
T Consensus        64 ~L~i~~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~-~v~  141 (304)
T 2yd9_A           64 VLRIQPLRTPRDENVYECVAQNSVGEI-TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDP-EIT  141 (304)
T ss_dssp             EEEECSCCTTTTCSEEEEEEECSSCEE-CCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCC-EEE
T ss_pred             EEEEecccccCCCeEEEEEEECCCCeE-EEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCC-eEE
Confidence            799999998 99999999999998874 77888998764       667777877888999999999999998776 799


Q ss_pred             EeeCCeecCccc-cccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee-eEEEEEee-CCCceeeCCCcccccCCC
Q psy535           91 WTKDKRLLEPYQ-TKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS-GQMEVLVR-KPPAFTIKPEAMYQRKVG  167 (460)
Q Consensus        91 W~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~-~~~~v~v~-~~p~~~~~~~~~~~~~~g  167 (460)
                      |++++..+.... ..++....++.|.|.++..+|+|.|+|.|.|..|..... ..+.|.+. .+|.+...+... .+..|
T Consensus       142 W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~-~v~~G  220 (304)
T 2yd9_A          142 WFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSH-EIMPG  220 (304)
T ss_dssp             EEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCB-CCCTT
T ss_pred             EEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCce-EEcCC
Confidence            999999886432 234555667789999999999999999999988765433 45556543 567777777664 68899


Q ss_pred             CeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535          168 ESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       168 ~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      +.++|.|.+   .|.|.|.+.|++++..+............|.+.++  .|+|.|+|.|.|..|.......|.|..
T Consensus       221 ~~v~l~C~~---~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~  291 (304)
T 2yd9_A          221 GNVNITCVA---VGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKS  291 (304)
T ss_dssp             CCEEEEEEE---EEESCCEEEEEETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC---
T ss_pred             CeEEEEEEE---eeeCCCEEEEEECCEECCCcccccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEec
Confidence            999999999   68899999999955433333222222224666655  589999999999999999888888875

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.97  E-value=1.1e-29  Score=236.40  Aligned_cols=310  Identities=20%  Similarity=0.224  Sum_probs=199.0

Q ss_pred             ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEe
Q psy535            8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIK   81 (460)
Q Consensus         8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~   81 (460)
                      .++|+.+..++   +|.|.+++.+|+|.|+|.|.|..+......+.|.|..   +|.+...+......+|+.+.|.|.+.
T Consensus        62 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~  141 (438)
T 1qgc_4           62 IPDRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLN  141 (438)
T ss_dssp             CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEE
T ss_pred             ccCcEEEEccCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEc
Confidence            45788887543   8999999999999999999998775435567777753   56665544333344677999999998


Q ss_pred             cCCCCC-eEEEeeCCeecCccccccE--------EEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535           82 ANPTFQ-YVTWTKDKRLLEPYQTKDI--------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP  152 (460)
Q Consensus        82 ~~~~~~-~v~W~~~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p  152 (460)
                      +.++++ .|+|+|+|..+........        .....+.|.|.++..+|+|.|+|.|.|..+....  .+.+....++
T Consensus       142 g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~--~~~~~~~~~~  219 (438)
T 1qgc_4          142 NFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI--VKSFNRNECE  219 (438)
T ss_dssp             EEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCE--EEEEETTC-C
T ss_pred             cccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCce--ecccccccce
Confidence            843333 7999999998764300000        0111346999999999999999999998776422  2333322222


Q ss_pred             ceeeCCCcccccCCCCeEEEEeeeeccCCCC--CCeeEEEcCC-CccC------------------CcccEEEe------
Q psy535          153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ--KPTITWQRRD-GVAL------------------PKNRVKIV------  205 (460)
Q Consensus       153 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p--~~~~~W~~~~-~~~~------------------~~~~~~~~------  205 (460)
                      .....+... .+..|+.++|.|.+   .+.|  .+.+.|++++ +..+                  ...++...      
T Consensus       220 ~~~~~~~~~-~v~~G~~v~L~C~~---~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  295 (438)
T 1qgc_4          220 VMLVESGGG-LVKPGGSLKLSCTA---SGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKN  295 (438)
T ss_dssp             CEEEEECCE-EECTTCCEEEEEEE---ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTT
T ss_pred             eEEecCCce-EEecCCcEEEEEEE---cccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCC
Confidence            223333333 67899999999999   6777  6799999852 2111                  12344333      


Q ss_pred             cceEEEccccceeceEEEEEEecccc-----eeeeeeEEEEecCCCCCCCceee-----eeecceEEEEeecCCCCC-CC
Q psy535          206 GGNITIEGLRRVDFGYYECVVSNEVA-----TIVQAAQLVVEGTQPHAPYNITG-----VATEFSVTLEWLPGYSGG-PD  274 (460)
Q Consensus       206 ~~~l~i~~~~~~~~g~y~C~a~n~~g-----~~~~~~~l~v~~~~p~~p~~~~~-----~~~~~~~~l~w~~~~~~~-~~  274 (460)
                      ...|.|.++...|+|.|+|.|.|..+     .......+.|...++.+|.....     ...+..++|.|...  +. |.
T Consensus       296 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~--g~~P~  373 (438)
T 1qgc_4          296 TLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVK--GYFPE  373 (438)
T ss_dssp             EEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEE--SCBSS
T ss_pred             eEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEec--cccCC
Confidence            22799999999999999999998544     22234456665433333432211     23467899999843  32 32


Q ss_pred             ceeeEEEEEEecCCCCeeee-eccCCC----CceEEEccCccCccEEEEEEEEcCCCCC
Q psy535          275 LKQNYVIWYREQGNKDWLPI-PVTPPG----STQITINRLTPATTYEFQVVGKNELGDG  328 (460)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~i~~l~~~~~~~~~~~a~n~~G~~  328 (460)
                      +  -.+.|++++........ .....+    ...|.|.+....+ |.|.|.|.|..|..
T Consensus       374 ~--~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~  429 (438)
T 1qgc_4          374 P--VTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST  429 (438)
T ss_dssp             C--CEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTE
T ss_pred             C--cEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCc
Confidence            2  13667666543221110 001111    1247787777777 99999999999853

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.96  E-value=2.8e-29  Score=222.01  Aligned_cols=231  Identities=16%  Similarity=0.196  Sum_probs=172.9

Q ss_pred             ccceEEEee----CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeE--EcceeeeecceeeEEEEEEE-
Q psy535            8 LETRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT--FTPTVQYLPFRLQGVVQCHI-   80 (460)
Q Consensus         8 ~~~r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~~-   80 (460)
                      ..+|+.+..    +++|.|.+++.+|+|.|+|.|.+..+...+..+.+.+..+|.+.  ..+.......|+.+.|.|.+ 
T Consensus        60 ~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~  139 (308)
T 4fom_A           60 YQGRVLFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAA  139 (308)
T ss_dssp             TTTTEEESCCSSSBCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEE
T ss_pred             ccceEEeeccCCCceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEec
Confidence            345666533    35899999999999999999998755444667778877766543  34455556678899999986 


Q ss_pred             ecCCCCCeEEEeeCCeecCccccc--cEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCC
Q psy535           81 KANPTFQYVTWTKDKRLLEPYQTK--DIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKP  158 (460)
Q Consensus        81 ~~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~  158 (460)
                      .+.|.+ .|+|++++..+......  .......+.|.|..+..+|+|.|+|.|.|..+....+..+.|.|..+|.+...+
T Consensus       140 ~g~P~~-~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~  218 (308)
T 4fom_A          140 TGKPVA-HIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTG  218 (308)
T ss_dssp             EEBSCC-EEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBC
T ss_pred             CCcCCc-eEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcc
Confidence            466655 89999999887532110  001112235999999999999999999999888777778888888888877766


Q ss_pred             CcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeee
Q psy535          159 EAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       159 ~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      .....+..|+.++|.|.+   .|.|.| .+.|+++++.+. .......+..+.|.++...|+|.|+|.|.|..|....+.
T Consensus       219 ~~~~~~~~g~~v~l~C~~---~g~P~p~~v~W~k~~~~~~-~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~  294 (308)
T 4fom_A          219 YDGNWFVGRKGVNLKCNA---DANPPPFKSVWSRLDGQWP-DGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQK  294 (308)
T ss_dssp             CCSCEETTCCSCEEECCE---EEESCEEEEECCBSSSCCC-SSCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEE
T ss_pred             cceeeeeccccEEEEEEE---ecCCCCcEEEEEECCeECC-CcEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEE
Confidence            655467788999999999   688888 699999665443 222211233456788999999999999999999999998


Q ss_pred             EEEEec
Q psy535          238 QLVVEG  243 (460)
Q Consensus       238 ~l~v~~  243 (460)
                      .|.|..
T Consensus       295 ~l~V~~  300 (308)
T 4fom_A          295 VIYISD  300 (308)
T ss_dssp             ECCEEC
T ss_pred             EEEEEc
Confidence            888876

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.96  E-value=6.7e-28  Score=214.95  Aligned_cols=219  Identities=18%  Similarity=0.228  Sum_probs=163.8

Q ss_pred             eCCeEEEeecCCCCCe-eEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC
Q psy535           16 KDGTLVINPVGSDDSG-LYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD   94 (460)
Q Consensus        16 ~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~   94 (460)
                      .+++|.|.+++.+|+| .|+|.|.|..|......+.+.+..+|.+...+....+.+|+++.|.|.+.+.|..+.++|+|+
T Consensus        87 ~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~  166 (329)
T 3oq3_B           87 KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKN  166 (329)
T ss_dssp             ETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEET
T ss_pred             ecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEEC
Confidence            4679999999999999 999999998876433333344455666544444445677999999999999872348999999


Q ss_pred             CeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC--CCCccee--eEEEEEeeCCC----ceeeCCCcccccCC
Q psy535           95 KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA--HGTQGSS--GQMEVLVRKPP----AFTIKPEAMYQRKV  166 (460)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~--~g~~~~~--~~~~v~v~~~p----~~~~~~~~~~~~~~  166 (460)
                      +..+.. ...++... ++.|.|.++..+|+|.|+|.|.|.  .|.....  ..+.|.|..+|    .+. .+... .+..
T Consensus       167 ~~~l~~-~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~-~v~~  242 (329)
T 3oq3_B          167 NQELII-DGTKYSQS-GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKI-NVTI  242 (329)
T ss_dssp             TEECCC-SSSSEEEE-TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEE-EECT
T ss_pred             CccCCC-CCceEecC-CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCee-EEec
Confidence            998853 23444433 788999999999999999999987  5544333  34667777666    222 45443 6889


Q ss_pred             CCeEEEEeeeeccCCCC---CC-eeEEEcCCCccCCc-ccEEE--------ecceEEEccccceece-EEEEEEecccce
Q psy535          167 GESVDMHCEAQEAEGTQ---KP-TITWQRRDGVALPK-NRVKI--------VGGNITIEGLRRVDFG-YYECVVSNEVAT  232 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p---~~-~~~W~~~~~~~~~~-~~~~~--------~~~~l~i~~~~~~~~g-~y~C~a~n~~g~  232 (460)
                      |+.++|.|.+   .+.|   .+ .+.|++++...... .+...        ....|.|.++...|.| .|+|.|.|..|.
T Consensus       243 G~~~~l~C~~---~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~  319 (329)
T 3oq3_B          243 GEPANITCTA---VSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD  319 (329)
T ss_dssp             TSCEEEEEEE---EETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCE
T ss_pred             CCCEEEEEEE---EECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCc
Confidence            9999999999   5666   67 89999966543332 21111        3457999999999999 999999999999


Q ss_pred             eeeeeEEEE
Q psy535          233 IVQAAQLVV  241 (460)
Q Consensus       233 ~~~~~~l~v  241 (460)
                      ......|.|
T Consensus       320 ~~~~~~l~v  328 (329)
T 3oq3_B          320 KTLTTTVVL  328 (329)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEEe
Confidence            888877765

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.96  E-value=7e-28  Score=211.33  Aligned_cols=270  Identities=19%  Similarity=0.293  Sum_probs=191.1

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEee----cCeEEEeecCCCCCeEEEEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQ----NGSLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C~  130 (460)
                      |+.+.+.|....+.+|++++|.|.+.+.++.+.++|++ +|..+.. ...++....    .+.|.|.++..+|+|.|+|.
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV   80 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCS-SCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECcc-CCceEEEEEcCCCeEEEEEecCCCCCCEEEEEE
Confidence            56677888888899999999999999987555899999 7777754 233433332    34799999999999999999


Q ss_pred             EEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC--cccEE-Eecc
Q psy535          131 PYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--KNRVK-IVGG  207 (460)
Q Consensus       131 ~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~--~~~~~-~~~~  207 (460)
                      +.|..|.. .+..+.|.|..+|.+...+... .+..|+.+.|.|.+   .+.|.+.+.|++++.....  ..+.. ..++
T Consensus        81 ~~n~~g~~-~~~~~~l~v~~~~~~~~~~~~~-~~~~g~~v~l~C~~---~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  155 (291)
T 1qz1_A           81 VTAEDGTQ-SEATVNVKIFQKLMFKNAPTPQ-EFKEGEDAVIVCDV---VSSLPPTIIWKHKGRDVILKKDVRFIVLSNN  155 (291)
T ss_dssp             EECTTSCE-EEEEEEEEEECCSEEEECCSSE-EEETTSCEEECCEE---ECSSCCEEEEEETTSCSSTTCCTTEEECTTS
T ss_pred             EEcCCCCe-eEEEEEEEeeccccccCCCCcc-cccCCCeEEEEEEe---ccCCCCEEEEEECCEEcccCCCceEEEccCC
Confidence            99987653 5677888888888888777665 68899999999999   6889999999996554432  22333 2456


Q ss_pred             eEEEccccceeceEEEEEEeccccee--eeeeEEEEecCCCCC--CCc-eeeeeecceEEEEeecCCCCCCCceeeEEEE
Q psy535          208 NITIEGLRRVDFGYYECVVSNEVATI--VQAAQLVVEGTQPHA--PYN-ITGVATEFSVTLEWLPGYSGGPDLKQNYVIW  282 (460)
Q Consensus       208 ~l~i~~~~~~~~g~y~C~a~n~~g~~--~~~~~l~v~~~~p~~--p~~-~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~  282 (460)
                      .|.|.++...|.|.|+|.+.|..+..  .....+.+..+|...  +.. ......+..+.|.|..  .+.+.+.   +.|
T Consensus       156 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~--~g~p~p~---i~W  230 (291)
T 1qz1_A          156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDA--DGFPEPT---MSW  230 (291)
T ss_dssp             CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEE--EEESCCE---EEE
T ss_pred             cEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEE--EEeCCCc---EEE
Confidence            89999999999999999999876432  334455554321110  111 1122345678888874  3344443   677


Q ss_pred             EEecCCCCee-----eeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535          283 YREQGNKDWL-----PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK  337 (460)
Q Consensus       283 ~~~~~~~~~~-----~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~  337 (460)
                      ++++......     .... ......|.|.++...+.|.|.|.|.|..|....+..+.+.
T Consensus       231 ~~~g~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  289 (291)
T 1qz1_A          231 TKDGEPIENEEEDDEKHIF-SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF  289 (291)
T ss_dssp             EETTEECCCC--CCSSEEE-CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EECCEECcCCCCCCcceEE-cCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence            7765422111     1111 1245689999999999999999999999976555445443

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.96  E-value=3.9e-28  Score=212.76  Aligned_cols=215  Identities=17%  Similarity=0.254  Sum_probs=168.9

Q ss_pred             CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEE-eeCC
Q psy535           17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTW-TKDK   95 (460)
Q Consensus        17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W-~~~~   95 (460)
                      +++|.|.+++.+|+|.|+|.|.|  |.  +..+.|.|..+|.+...+....+.+|+.+.|.|.+.+ |..+.++| +++|
T Consensus        56 ~~~L~i~~~~~~d~G~Y~C~~~n--g~--~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g  130 (290)
T 2o26_X           56 KNEWIQEKAEATRTGTYTCSNSN--GL--TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDG  130 (290)
T ss_dssp             SSEEEETTCCGGGCEEEEEEESS--SC--EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTS
T ss_pred             CceEEEeccCHHhCeEEEEEeeC--Cc--cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCC
Confidence            36999999999999999999999  43  6788999988777666666778889999999999985 55258999 5688


Q ss_pred             eecCccccccEEEeecCeEEEeecCCCCCe-EEEEEEEcCCCCcceeeEEEEEee----CCCceeeCCCcccccCCCCeE
Q psy535           96 RLLEPYQTKDIVVMQNGSLLFTRVNQNHQG-RYTCTPYNAHGTQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESV  170 (460)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~g~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~  170 (460)
                      ..+..  ..++....++.|.|.++..+|+| .|+|.|.|..+.. .+..+.|.|.    .+|.+...+... .+..|+.+
T Consensus       131 ~~l~~--~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~-~s~~~~l~V~~~~~~~P~i~~~~~~~-~v~~G~~v  206 (290)
T 2o26_X          131 KSLPT--DLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWL-HSDKFTLKVREAIKAIPVVSVPETSH-LLKKGDTF  206 (290)
T ss_dssp             CCCCT--TCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEE-ECCCEEEEEECCCCSCCEEECSCSBC-CCCTTCCE
T ss_pred             cCCCC--CCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceE-EeEEEEEEEEeCCCCCCccccCCCcc-eEecCCcE
Confidence            77753  34555556678999999999999 9999999974442 3434555554    788888777766 78999999


Q ss_pred             EEEeeeeccCCCCCCe-eEEEcCCCcc---CC-ccc-------EEEecceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535          171 DMHCEAQEAEGTQKPT-ITWQRRDGVA---LP-KNR-------VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ  238 (460)
Q Consensus       171 ~l~C~~~~~~~~p~~~-~~W~~~~~~~---~~-~~~-------~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~  238 (460)
                      +|.|.+   .+.|.|. +.|++++...   +. ...       .....+.|.|.++...|.|.|+|.|.|..|.......
T Consensus       207 ~l~C~~---~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~  283 (290)
T 2o26_X          207 TVVCTI---KDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTT  283 (290)
T ss_dssp             EEEEEE---EESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEE---ecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEE
Confidence            999999   6888886 9999966542   11 111       1123457999999999999999999999999988888


Q ss_pred             EEEec
Q psy535          239 LVVEG  243 (460)
Q Consensus       239 l~v~~  243 (460)
                      |.|..
T Consensus       284 l~V~~  288 (290)
T 2o26_X          284 LKVVE  288 (290)
T ss_dssp             ECC--
T ss_pred             EEEEe
Confidence            87764

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.96  E-value=1e-27  Score=219.94  Aligned_cols=227  Identities=21%  Similarity=0.382  Sum_probs=178.5

Q ss_pred             cceEEEeeCCeEEEeecCCCCCe---eEEEEEEeCCCCcceeeeE--EEEecC--------CeeEEcceeeeecceeeEE
Q psy535            9 ETRVVIKKDGTLVINPVGSDDSG---LYMCEVSNGIGEPQAAQAY--LNVEFP--------AKVTFTPTVQYLPFRLQGV   75 (460)
Q Consensus         9 ~~r~~~~~~~~L~i~~~~~~d~G---~Y~C~~~~~~~~~~~~~~~--l~v~~~--------p~~~~~~~~~~~~~g~~~~   75 (460)
                      +.|+.+..+|+|.|.+++.+|+|   .|+|.|.|..+........  +.+..+        ....+.+....+.+|+.+.
T Consensus       152 ~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~  231 (395)
T 1bih_A          152 DRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTM  231 (395)
T ss_dssp             CTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEE
T ss_pred             cccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEE
Confidence            67888888999999999999999   9999999988774222111  111111        0112235566788999999


Q ss_pred             EEEEEecCCCCCeEEEeeCCeecCccccccEEEee---cCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535           76 VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP  152 (460)
Q Consensus        76 l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p  152 (460)
                      |.|.+.+.|.+ .+.|+++|..+......++....   ...|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|..+|
T Consensus       232 l~C~~~g~p~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V~~~P  309 (395)
T 1bih_A          232 IYCMYGSNPMG-YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP-QKHSLKLTVVSAP  309 (395)
T ss_dssp             EEEEEECSSCC-CCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSC-EEEEEEEEEEEEE
T ss_pred             EEEEeccCCCC-eEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCc-eEEEEEEEEEcCC
Confidence            99999998876 69999999988654333333211   1269999999999999999999988875 3346677777899


Q ss_pred             ceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccce
Q psy535          153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       153 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      .+...+.....+..|+.++|.|.+   .|.|.|.+.|++ ++..+...++...++.|.|.++...|.|.|+|.|.|..|.
T Consensus       310 ~~~~~~~~~~~~~~g~~~~l~C~~---~g~p~p~v~W~~-~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~  385 (395)
T 1bih_A          310 KYEQKPEKVIVVKQGQDVTIPCKV---TGLPAPNVVWSH-NAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGD  385 (395)
T ss_dssp             EEEECCCSEEEECTTSCEEEECEE---EEESCCCCEEEE-TTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEE
T ss_pred             ccccCCCcceEecCCCeEEEEEEE---CcccCCeeEEEE-CCEECCCCceEEECCEEEEeeCCcccCEEEEEEEEccCCC
Confidence            988887763468899999999999   688999999999 4555656677778889999999999999999999999999


Q ss_pred             eeeeeEEEE
Q psy535          233 IVQAAQLVV  241 (460)
Q Consensus       233 ~~~~~~l~v  241 (460)
                      ......|.|
T Consensus       386 ~~~~~~l~V  394 (395)
T 1bih_A          386 KYFETLVQV  394 (395)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEEEEEE
Confidence            888887765

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.96  E-value=4.7e-28  Score=212.24  Aligned_cols=217  Identities=18%  Similarity=0.246  Sum_probs=167.9

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe-eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee-CC
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK-VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DK   95 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~   95 (460)
                      ++|.|.+++.+|+|.|+|.+.+..+.. +..+.|.|..+|. +...+....+.+|+++.|.|.+.+.+.+..+.|++ ++
T Consensus        51 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~  129 (289)
T 3ejj_X           51 STLTTRNATFKNTGTYRCTELEDPMAG-STTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGG  129 (289)
T ss_dssp             CEEEESSCCGGGCEEEEEECCC------CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGG
T ss_pred             cEEEEeeeccccCEEEEEEEeccCCcc-eeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCC
Confidence            499999999999999999999887764 7888999987766 56677778889999999999999876654599986 66


Q ss_pred             eecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC-CCCcceeeEEEEEee----CCCceeeCCCcccccCCCCeE
Q psy535           96 RLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA-HGTQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESV  170 (460)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~-~g~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~  170 (460)
                      ..+.  ...++....++.|.|.++..+|+|.|+|.+.+. .+.  .+..+.|.|.    .+|.+...+... .+..|+.+
T Consensus       130 ~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~--~~~~~~l~V~~~~~~~p~i~~~~~~~-~~~~g~~~  204 (289)
T 3ejj_X          130 RQVL--RKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRES--TSTGIWLKVNRVHPEPPQIKLEPSKL-VRIRGEAA  204 (289)
T ss_dssp             EECC--TTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEE--ECCCEEEEEESSCCCCCEEEEESSSE-ECCSSSCE
T ss_pred             eecC--CCccEEECCCCCEEEeecccccCEEEEEEEEeCCCcc--ccccEEEEEEECCCCCCeEEecCCce-EEEeCCcE
Confidence            6654  345566667788999999999999999999843 333  3445566665    678887777765 56789999


Q ss_pred             EEEeeeeccCCCCCCeeEEEcCCCccCCccc-------EEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535          171 DMHCEAQEAEGTQKPTITWQRRDGVALPKNR-------VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       171 ~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      .|.|.+.  .+.|.+.+.|++++. .+....       .....+.|.|.++...|.|.|+|.|.|..|....++.|.+..
T Consensus       205 ~l~C~~~--~~~p~~~i~W~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~  281 (289)
T 3ejj_X          205 QIVCSAT--NAEVGFNVILKRGDT-KLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE  281 (289)
T ss_dssp             EEEEEEE--ESSSCCEEEEEETTE-ECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-
T ss_pred             EEEEEeC--CCCCceEEEEEECCE-EeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEe
Confidence            9999993  337899999999544 333211       112355799999999999999999999999999998887764

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.96  E-value=2.9e-27  Score=207.37  Aligned_cols=267  Identities=17%  Similarity=0.298  Sum_probs=189.2

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~  130 (460)
                      .+|.+...+....+.+|+.++|.|.+.+.|.  .+.|++ +|..+..  ..++....++   .|.|.++..+|+|.|+|.
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~--~v~W~~~~g~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   78 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIIS--TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ   78 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS--EEECBCTTCCBCCC--BTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC--ceEEECCCCcCccC--CCcEEEecCCCEEEEEEccCCcccCEEEEEE
Confidence            4677888888899999999999999998764  799999 6766643  3444444444   799999999999999999


Q ss_pred             EEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC--cccEEE-ecc
Q psy535          131 PYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--KNRVKI-VGG  207 (460)
Q Consensus       131 ~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~--~~~~~~-~~~  207 (460)
                      +.|..|.. .+..+.|.|..+|.+...+... .+..|+.+.|.|.+   .+.|.+.+.|++++.....  ..+... .++
T Consensus        79 ~~n~~g~~-~~~~~~l~v~~~~~~~~~~~~~-~v~~G~~v~l~C~~---~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  153 (291)
T 2wim_A           79 ATDAKGQT-QEATVVLEIYQKLTFREVVSPQ-EFKQGEDAEVVCRV---SSSPAPAVSWLYHNEEVTTISDNRFAMLANN  153 (291)
T ss_dssp             EECSSSCE-EEEEEEEEEECCCBCCSCCCSE-EEETTSCEEECCCC---BCSSCCEEEEECC----CBCCCSSEEECTTS
T ss_pred             EecccCce-EEEEEEEEecCCcceEeCCCCh-hhcCCCCEEEEEEE---ccCCCCEEEEEECCccccccCCceEEEccCC
Confidence            99987765 3567778888888777666655 67899999999998   7889999999996554432  233333 356


Q ss_pred             eEEEccccceeceEEEEEEeccccee--eeeeEEEEecCCCCCCCc--e--eeeeecceEEEEeecCCCCCCCceeeEEE
Q psy535          208 NITIEGLRRVDFGYYECVVSNEVATI--VQAAQLVVEGTQPHAPYN--I--TGVATEFSVTLEWLPGYSGGPDLKQNYVI  281 (460)
Q Consensus       208 ~l~i~~~~~~~~g~y~C~a~n~~g~~--~~~~~l~v~~~~p~~p~~--~--~~~~~~~~~~l~w~~~~~~~~~~~~~~~~  281 (460)
                      .|.|.++...|.|.|+|.+.|..+..  .....+.+..+ |.....  .  .....+..+.|.|..  .+.+.+.   +.
T Consensus       154 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~-p~~~~~~~~~~~~~~~g~~~~l~C~~--~g~p~p~---v~  227 (291)
T 2wim_A          154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVP-PAISMPQKSFNATAERGEEMTFSCRA--SGSPEPA---IS  227 (291)
T ss_dssp             CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBC-CCCBCSCSEEECCSSSCCEEEEECBC--CCBSCCE---EE
T ss_pred             CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccC-CccccCcccccceecCCCeEEEEEEe--ecCCCCe---EE
Confidence            89999999999999999999887543  23445555542 322111  1  122345678888874  4445443   67


Q ss_pred             EEEecCCCCe-eeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535          282 WYREQGNKDW-LPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK  337 (460)
Q Consensus       282 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~  337 (460)
                      |++++..... ..... ......|.|.++...+.|.|+|.|.|..|....+..+.+.
T Consensus       228 W~~~g~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  283 (291)
T 2wim_A          228 WFRNGKLIEENEKYIL-KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  283 (291)
T ss_dssp             EEETTEECCCTTTEEE-CSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC-
T ss_pred             EEECCEECcCCccEEE-cCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEE
Confidence            8876532110 01111 1245689999999999999999999999977665555544

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.96  E-value=5.8e-28  Score=225.39  Aligned_cols=282  Identities=17%  Similarity=0.160  Sum_probs=180.3

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcc-------eeeeEEEEecCCeeEEccee---eeecceeeEEEEEEEecCCC--
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQ-------AAQAYLNVEFPAKVTFTPTV---QYLPFRLQGVVQCHIKANPT--   85 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~-------~~~~~l~v~~~p~~~~~~~~---~~~~~g~~~~l~C~~~~~~~--   85 (460)
                      ++|.|.+++.+|+|.|+|.|.|..|...       +....|.|...|.  ..|..   ..+.+|+.+.|.|.+.+.++  
T Consensus       142 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~--~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~  219 (450)
T 1z7z_I          142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPA--TPPQLVSPRVLEVDTQGTVVCSLDGLFPVS  219 (450)
T ss_dssp             EEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCS--SCCEEECCSEEETTSEEEEEEEEESCTTGG
T ss_pred             eEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCC--CCCEecCceeEEeCCcEEEEEEeeCCCCCC
Confidence            4899999999999999999999876421       1334555543211  12222   66788999999999999833  


Q ss_pred             CCeEEEeeCCeecCccccccEEEeecCeEEEe---ecCCCCCe--EEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCc
Q psy535           86 FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT---RVNQNHQG--RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA  160 (460)
Q Consensus        86 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G--~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~  160 (460)
                      .+.+.|++++..+..    ++... ...+.+.   ++..+|+|  .|+|.+.|..|.......+.|....+|.+...+  
T Consensus       220 ~~~~~W~~~~~~~~~----~~~~~-~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~--  292 (450)
T 1z7z_I          220 EAQVHLALGDQRLNP----TVTYG-NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTK--  292 (450)
T ss_dssp             GCEEEEEETTEECCC----EEEEE-TTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESC--
T ss_pred             ceEEEEeCCCEeCCc----eEEec-CCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCC--
Confidence            458999999998763    22222 2223222   77999999  999999999887666555555544356665443  


Q ss_pred             ccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccc-e---eeee
Q psy535          161 MYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA-T---IVQA  236 (460)
Q Consensus       161 ~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g-~---~~~~  236 (460)
                      . .+..|+.++|.|.+   .  |.|.+.|   ++..+...   .....|.|..+...|.|.|+|.|.|..+ .   ....
T Consensus       293 ~-~v~~G~~v~l~C~~---~--p~p~i~W---~g~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~  360 (450)
T 1z7z_I          293 P-EVSEGTEVTVKCEA---H--PRAKVTL---NGVPAQPL---GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQT  360 (450)
T ss_dssp             S-EEETTCEEEEEEEC---------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEE
T ss_pred             e-eEeCCCcEEEEEec---C--CCCEeEE---CCEEcCCC---CceEEEEEecCcccCCceEEEEEEcCCCCccccccee
Confidence            2 57899999999998   4  8899999   33333111   1234799999999999999999997655 3   3355


Q ss_pred             eEEEEecCCCCC----CCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccC
Q psy535          237 AQLVVEGTQPHA----PYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPA  312 (460)
Q Consensus       237 ~~l~v~~~~p~~----p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~  312 (460)
                      ..|.|..+|...    |... ....+..+.|.|.  ..+.|.+.   +.|++++..     .  .. ....+   .+...
T Consensus       361 ~~l~V~~~P~~~~~~~p~~~-~~~~g~~~~l~C~--~~g~P~p~---i~W~~~g~~-----~--~~-~g~~~---~v~~~  423 (450)
T 1z7z_I          361 RELRVLYGPRLDERDCPGNW-TWPENSQQTPMCQ--AWGNPLPE---LKCLKDGTF-----P--LP-IGESV---TVTRD  423 (450)
T ss_dssp             EECEEEEEEECCSTTSCSEE-EEETTCEECCCCC--CEEESCCE---EEEEETTTE-----E--CC-TTSCE---ECCGG
T ss_pred             EEEEEecCCceeeccCCCce-eEcCCCeEEEEEe--cccCCCCc---EEEEECCcc-----c--CC-CCCeE---eEehh
Confidence            666665432211    1221 2334567777776  45556553   678877541     1  11 22233   57789


Q ss_pred             ccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535          313 TTYEFQVVGKNELGDGMLSNIVVVK  337 (460)
Q Consensus       313 ~~~~~~~~a~n~~G~~~~s~~~~~~  337 (460)
                      +.|.|+|.|.|..|....+..+.+.
T Consensus       424 d~G~Y~C~a~N~~G~~~~~~~l~V~  448 (450)
T 1z7z_I          424 LEGTYLCRARSTQGEVTREVTVNVL  448 (450)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             hCeEEEEEEEeCCCceeEEEEEEEE
Confidence            9999999999999976555555543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.96  E-value=5e-28  Score=222.73  Aligned_cols=230  Identities=21%  Similarity=0.302  Sum_probs=180.5

Q ss_pred             ccCcccceEEEeeCCeEEEeecCCCC-CeeEEEEEEeCCCCcc--eeeeEEEEec-------CCeeEEc---ceeeeecc
Q psy535            4 KVGSLETRVVIKKDGTLVINPVGSDD-SGLYMCEVSNGIGEPQ--AAQAYLNVEF-------PAKVTFT---PTVQYLPF   70 (460)
Q Consensus         4 ~~~~~~~r~~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~~~~--~~~~~l~v~~-------~p~~~~~---~~~~~~~~   70 (460)
                      .+...+.|+.+..+|+|.|.+++.+| +|.|+|.|.|..+...  ...+.|.|..       +|.+...   +....+.+
T Consensus       157 ~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~  236 (404)
T 3p3y_A          157 EPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLR  236 (404)
T ss_dssp             CBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEET
T ss_pred             cccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEec
Confidence            44566778888888999999999999 5999999999877532  2335566643       2332221   23456788


Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK  150 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~  150 (460)
                      |+++.|.|.+.+.|.+ .+.|++++..+...  .......++.|.|.++..+|+|.|+|.|.|..|..  +..+.|.|..
T Consensus       237 G~~v~l~C~~~g~p~~-~v~W~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~  311 (404)
T 3p3y_A          237 GMDLLLECIASGVPTP-DIAWYKKGGDLPSD--KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI--RHTISVRVKA  311 (404)
T ss_dssp             TSCEEEECCBCCSSCC-EEEEEETTBCCCTT--TEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEE--EEEEEEEEEE
T ss_pred             CCCEEEEEEECCCCCC-cEEEEECCEECCCC--cccccccCceEEEccCCHhHCEEEEEEEEeCCCcE--EEEEEEEEeC
Confidence            9999999999998776 89999999987632  22333446789999999999999999999988874  4566677777


Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc---ccEEEecceEEEccccceeceEEEEEEe
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK---NRVKIVGGNITIEGLRRVDFGYYECVVS  227 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~---~~~~~~~~~l~i~~~~~~~~g~y~C~a~  227 (460)
                      +|.+...+... .+..|+.++|.|.+   .|.|.+.+.|++++......   ......++.|.|.++...|.|.|+|.|.
T Consensus       312 ~p~~~~~~~~~-~v~~g~~~~l~C~~---~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  387 (404)
T 3p3y_A          312 APYWLDEPKNL-ILAPGEDGRLVCRA---NGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTS  387 (404)
T ss_dssp             EEEEEECCCCE-EECTTCCEEEECEE---EEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEE
T ss_pred             CCeeeccCCcc-eeecCCcEEEEEEc---cccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEE
Confidence            88888777765 68899999999999   78899999999955433221   2445567789999999999999999999


Q ss_pred             cccceeeeeeEEEEe
Q psy535          228 NEVATIVQAAQLVVE  242 (460)
Q Consensus       228 n~~g~~~~~~~l~v~  242 (460)
                      |..|.......|.|.
T Consensus       388 N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          388 NEHGYLLANAFVSVL  402 (404)
T ss_dssp             ETTEEEEEEEEEEEC
T ss_pred             eCCCcEEEEEEEEEE
Confidence            999999988888775

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.96  E-value=1.6e-26  Score=205.10  Aligned_cols=255  Identities=20%  Similarity=0.306  Sum_probs=182.5

Q ss_pred             ccCCCCeEEEEeeeeccCCC-CCCeeEEEcCCCcc-CCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGT-QKPTITWQRRDGVA-LPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV  240 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~-p~~~~~W~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~  240 (460)
                      .+..|++++|.|.+   .+. +.+.+.|.++++.. ....+....++.|.|.++...|+|.|+|.+   .|.......|.
T Consensus        17 ~~~~G~~v~l~C~~---~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~---~g~~~~~~~L~   90 (325)
T 1n26_A           17 TSLPGDSVTLTCPG---VEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR---AGRPAGTVHLL   90 (325)
T ss_dssp             EECTTCCEEEECTT---SCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEES---SSSCSCEEEEE
T ss_pred             ECCCCCcEEEEeCC---CCCCCCceEEEEECCccCCccccccccccceEEecccchhhCeEeEEEe---CCEEeeeEEEE
Confidence            45689999999998   444 47899999865543 222334455778999999999999999993   57777778888


Q ss_pred             EecCCCCCCCceeee--eecceEEEEeecCCCCCCCceeeEEEEEEec-CC--CCe-eeee-ccCCCCceEEEccCc-cC
Q psy535          241 VEGTQPHAPYNITGV--ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ-GN--KDW-LPIP-VTPPGSTQITINRLT-PA  312 (460)
Q Consensus       241 v~~~~p~~p~~~~~~--~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~-~~--~~~-~~~~-~~~~~~~~~~i~~l~-~~  312 (460)
                      |.. +|..|. +.+.  .....+.+.|.++.+++.+  ..|.+.|+.. +.  ..| .... ....+...+.+..+. +.
T Consensus        91 V~~-pP~~P~-l~c~~~~~~~~~~c~W~~~~~~~~~--~~y~l~~~~~~~~~~~~~~~~c~~~~~~~~~~c~i~~~~~~~  166 (325)
T 1n26_A           91 VDV-PPEEPQ-LSCFRKSPLSNVVCEWGPRSTPSLT--TKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDS  166 (325)
T ss_dssp             ECC-CCCCCC-CEEEBSSTTSCEEEEECCSSCCCTT--CEEEEEEEEESSSSCEEEEEEEEEETTTTEEEEEECCCTTCC
T ss_pred             ecc-CCCCCc-eeEEeecCCCcEEEEECCCCCCCCC--ceEEEEEEEccCCCCCcccccCCCCCCCCCEEEEECCCcccC
Confidence            875 677776 5543  3356899999987665543  5788887754 21  122 1221 112245678888876 77


Q ss_pred             ccEEEEEEEEcCCCCCCCCCcEEEEcc-CCCCCCCcceEEEeec---ceEEEEecCCCC--CCccceEEEEEEEEcCCee
Q psy535          313 TTYEFQVVGKNELGDGMLSNIVVVKTK-GPKPGPPRNVSVTEVN---NGFVISWQPPLE--RASLIQYYLIKYRTDGSWK  386 (460)
Q Consensus       313 ~~~~~~~~a~n~~G~~~~s~~~~~~~~-~~~P~~p~~~~~~~~~---~~v~l~W~~~~~--~~~~i~~y~i~~~~~~~~~  386 (460)
                      ..|.|+|.|.|..|.+. +....+... ...|.||.++.+....   +++.|+|++|..  .++.+++|+|+|+..+.  
T Consensus       167 ~~Y~f~v~A~N~~G~~~-s~~~~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr~~~~--  243 (325)
T 1n26_A          167 SFYIVSMCVASSVGSKF-SKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERS--  243 (325)
T ss_dssp             CEEEEEEEEEETTEEEE-CCCEEEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTC--
T ss_pred             cEEEEEEEEEcCCCCcc-cCcEEEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeEEEEEEEEeCCC--
Confidence            99999999999999763 444444433 2348999999998764   489999999875  45678999999997542  


Q ss_pred             eeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCce
Q psy535          387 TLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI  454 (460)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~  454 (460)
                                             ..|..+.. .....++.|.+|.|++.|.|||+|+|..|.|.+|++
T Consensus       244 -----------------------~~W~~~~~-~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~w  287 (325)
T 1n26_A          244 -----------------------KTFTTWMV-KDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEW  287 (325)
T ss_dssp             -----------------------SCCEEEEC-GGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCC
T ss_pred             -----------------------CCCEEEcc-cCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCC
Confidence                                   12332221 124578999999999999999999999987666554

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.96  E-value=4.6e-27  Score=215.02  Aligned_cols=348  Identities=15%  Similarity=0.211  Sum_probs=223.1

Q ss_pred             CCeeEEccee-eeecceeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEeecCeEEEeecCCCC------CeEE
Q psy535           56 PAKVTFTPTV-QYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQNGSLLFTRVNQNH------QGRY  127 (460)
Q Consensus        56 ~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d------~G~y  127 (460)
                      +|.|...|.. ..+.+|+.++|.|.+.|.|.+ .|+|+| +|..+.... .......+++|.|.++..+|      +|.|
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p-~v~W~k~~g~~~~~~~-~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y   80 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMP-EIIWIRSDGTAVGDVP-GLRQISSDGKLVFPPFRAEDYRQEVHAQVY   80 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCC-EEEEEETTSCBCCCBT-TTBEECSTTEEEECCCCGGGCCHHHHEEEE
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCC-EEEEEcCCCCccccCC-CceEEcCCceEEecccChhhccccccCceE
Confidence            5677766654 457789999999999998766 899999 788775432 22344567899999999987      9999


Q ss_pred             EEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCC---CCeeEEEcCCCccCC-----c
Q psy535          128 TCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ---KPTITWQRRDGVALP-----K  199 (460)
Q Consensus       128 ~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p---~~~~~W~~~~~~~~~-----~  199 (460)
                      +|.|.|..|.. .+..+.|.+..+|.+...+... .+..|+.+.|.|.+   .+.+   .+.+.|++++.....     .
T Consensus        81 ~C~a~n~~g~~-~s~~~~v~v~~~p~~~~~~~~~-~v~~G~~v~l~C~~---~~~~~~~~~~v~W~~~~~~~~~~~~~~~  155 (388)
T 2v5m_A           81 ACLARNQFGSI-ISRDVHVRAVVAQYYEADVNKE-HVIRGNSAVIKCLI---PSFVADFVEVVSWHTDEEENYFPGAEYD  155 (388)
T ss_dssp             EEEEEETTEEE-ECCCEEEEEECCCCCCCBCCCE-EEETTSCEEECCBC---CTTTTTTEEEEEEEETTCCEECSSSCBT
T ss_pred             EEEEEccCCeE-EecceEEEEccccccccCccce-eeecCCcEEEEEEC---cCCCCCCcceEEEEeCCCcccccccCCC
Confidence            99999988764 3446667777777776666554 67899999999998   4443   378999996654421     2


Q ss_pred             ccEEE-ecceEEEccccceec-eEEEEEEecccceee-ee---eEEEEecCC----CCCCCce---eeeeecceEEEEee
Q psy535          200 NRVKI-VGGNITIEGLRRVDF-GYYECVVSNEVATIV-QA---AQLVVEGTQ----PHAPYNI---TGVATEFSVTLEWL  266 (460)
Q Consensus       200 ~~~~~-~~~~l~i~~~~~~~~-g~y~C~a~n~~g~~~-~~---~~l~v~~~~----p~~p~~~---~~~~~~~~~~l~w~  266 (460)
                      .+... .++.|.|.++...|. |.|+|.+.|..+... ..   ..+.+..+.    |..+...   .....+..++|.|.
T Consensus       156 ~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~  235 (388)
T 2v5m_A          156 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCP  235 (388)
T ss_dssp             TTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCC
T ss_pred             CcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEE
Confidence            23333 356899999999999 999999999764322 11   245554321    1111111   11233567888886


Q ss_pred             cCCCCCCCceeeEEEEEEecCCCCee-eeecc---CCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCC
Q psy535          267 PGYSGGPDLKQNYVIWYREQGNKDWL-PIPVT---PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK  342 (460)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~  342 (460)
                        ..+.+.+.   +.|+++....... .....   ......|.|.++...+.|.|+|.|.|..|....+..+.+......
T Consensus       236 --~~g~p~p~---v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  310 (388)
T 2v5m_A          236 --AQGFPAPS---FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA  310 (388)
T ss_dssp             --CEEESCCE---EEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEE
T ss_pred             --CCCCCCCE---EEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCcc
Confidence              33444443   7788864332111 11000   012457999999999999999999999997555555555432110


Q ss_pred             CCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535          343 PGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS  422 (460)
Q Consensus       343 P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (460)
                      ...|....+. ....+.|......   .+..  .|.|..++..                                .....
T Consensus       311 ~~~~~~~~v~-~g~~~~l~C~~~g---~p~p--~i~W~~~g~~--------------------------------i~~~~  352 (388)
T 2v5m_A          311 KIDPPTQTVD-FGRPAVFTCQYTG---NPIK--TVSWMKDGKA--------------------------------IGHSE  352 (388)
T ss_dssp             EEESSEEEEC-TTSCEEEEEEEEE---ECCC--EEEEEETTEE--------------------------------CSCCS
T ss_pred             ccCCCcEEec-CCCCEEEEEEecc---ccCC--eEEEEECCEE--------------------------------CccCC
Confidence            1122222221 2245555555321   1111  3555554420                                01234


Q ss_pred             ceEEECCCCcCceEEEEEEEeecCCCCCCCc
Q psy535          423 TQITINRLTPATTYEFQVVGKNELGDGMLSN  453 (460)
Q Consensus       423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~  453 (460)
                      ..+.|.++.....-.++..|.|..|....+-
T Consensus       353 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~  383 (388)
T 2v5m_A          353 SVLRIESVKKEDKGMYQCFVRNDRESAEASA  383 (388)
T ss_dssp             SEEEESSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             CEEEEecCChhhCEEEEEEEEcCCCcEEEEE
Confidence            5788999988888888899999999754443

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.96  E-value=5.3e-30  Score=255.75  Aligned_cols=392  Identities=16%  Similarity=0.211  Sum_probs=35.5

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcc---eeeeecceeeEEEEEEEecCCCCCeEEEeeC
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTP---TVQYLPFRLQGVVQCHIKANPTFQYVTWTKD   94 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~   94 (460)
                      ++|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|..+|.+...+   ....+.+|++++|.|.+.+.|.+ .+.|+++
T Consensus       290 ~~L~i~~v~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~  367 (772)
T 3v2a_R          290 STLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP-EIKWYKN  367 (772)
T ss_dssp             EEEEESSCCSTTCSEEEEEEECSSCEE-EEEEEEEEECCCC---------------------------------------
T ss_pred             EEEEECcCCcCCCeEEEEEEEcCCcce-eEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCC-eEEEEEC
Confidence            479999999999999999999988764 778889998888765443   44667889999999999998766 7999999


Q ss_pred             CeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCc--ccccCCCCeEEE
Q psy535           95 KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEA--MYQRKVGESVDM  172 (460)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~--~~~~~~g~~~~l  172 (460)
                      |..+..    +......+.|.|.++..+|+|.|+|.|.|..|....+..+.|.|..+|.+......  ...+..|+.++|
T Consensus       368 g~~l~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l  443 (772)
T 3v2a_R          368 GIPLES----NHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTL  443 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEeCCC----CceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEE
Confidence            998763    22222446899999999999999999999988776677788888888876533111  113678999999


Q ss_pred             EeeeeccCCCCCCe-eEEEcCCCccC-------------------------------C--cccEEE------ecceEEEc
Q psy535          173 HCEAQEAEGTQKPT-ITWQRRDGVAL-------------------------------P--KNRVKI------VGGNITIE  212 (460)
Q Consensus       173 ~C~~~~~~~~p~~~-~~W~~~~~~~~-------------------------------~--~~~~~~------~~~~l~i~  212 (460)
                      .|.+   .+.|.|. +.|++++....                               .  ..+...      ....|.|.
T Consensus       444 ~C~~---~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~  520 (772)
T 3v2a_R          444 TCTV---YAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQ  520 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeEe---ccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEe
Confidence            9999   7888886 99998532110                               0  001111      11346666


Q ss_pred             cccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCce-eeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe
Q psy535          213 GLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNI-TGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW  291 (460)
Q Consensus       213 ~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~-~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (460)
                      ++  .|.|.|+|.|.|..|.......+.|... |...... .....+..+.|.|..  .+.+.+.   +.|++++.....
T Consensus       521 ~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~-p~i~~~p~~~~~~G~~v~l~C~~--~~~p~~~---v~W~k~~~~~~~  592 (772)
T 3v2a_R          521 AA--NVSALYKCEAVNKVGRGERVISFHVTRG-PEITLQPDMQPTEQESVSLWCTA--DRSTFEN---LTWYKLGPQPLP  592 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ec--ccCeEEEEEEEccccccceeEEEEEECC-ceeeccCCcccccCCceEEEEec--cCCCCCC---cEEEEcCCcccc
Confidence            55  6889999999999998888777777642 2211110 123345678888874  3333332   567776532110


Q ss_pred             e---ee-------------------eccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCC--CcEEEEccCCCCC---
Q psy535          292 L---PI-------------------PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS--NIVVVKTKGPKPG---  344 (460)
Q Consensus       292 ~---~~-------------------~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s--~~~~~~~~~~~P~---  344 (460)
                      .   ..                   .........|.|.++...+.|.|+|.|.|..|....+  ..+.+....+ |.   
T Consensus       593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~-P~~~~  671 (772)
T 3v2a_R          593 IHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVA-PTITG  671 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCC-CEeec
Confidence            0   00                   0001112358999999999999999999976544332  2333332211 21   


Q ss_pred             CCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcce
Q psy535          345 PPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQ  424 (460)
Q Consensus       345 ~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (460)
                      .+.+..+. ....+.|.......   |.  -.|.|..++.-.  ..      ...+.                ...+...
T Consensus       672 ~~~~~~v~-~g~~~~l~C~~~g~---P~--p~v~W~k~g~~l--~~------~~~~~----------------~~~~~~~  721 (772)
T 3v2a_R          672 NLENQTTS-IGESIEVSCTASGN---PP--PQIMWFKDNETL--VE------DSGIV----------------LKDGNRN  721 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCceEEe-CCCCEEEEEEeCcc---CC--CeEEEEECCeEC--cC------CCCeE----------------EcCCCcE
Confidence            22222221 12345555443211   11  134444433200  00      00000                0112356


Q ss_pred             EEECCCCcCceEEEEEEEeecCCCCCCCceeEe
Q psy535          425 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVV  457 (460)
Q Consensus       425 ~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~  457 (460)
                      +.|.++.....-.+++.|.|..|....+-.+.+
T Consensus       722 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  754 (772)
T 3v2a_R          722 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII  754 (772)
T ss_dssp             ---------------------------------
T ss_pred             EEECcCCHHHCEEEEEEEEeCCcceeEEEEEEE
Confidence            778888887788888999999998665544443

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.96  E-value=8.1e-29  Score=220.15  Aligned_cols=229  Identities=15%  Similarity=0.232  Sum_probs=163.2

Q ss_pred             CcccceEEEeeC-CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEec--
Q psy535            6 GSLETRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA--   82 (460)
Q Consensus         6 ~~~~~r~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~--   82 (460)
                      ...+.|+.+..+ ++|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|..+|.+...+....+.+|+.+.|.|.+.+  
T Consensus        48 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~  126 (317)
T 2y25_A           48 ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD-KSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQ  126 (317)
T ss_dssp             ECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCEE-EEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEE
T ss_pred             cCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCcE-EEEEEEEEecCccccccCCceecccCCCeEEEeeccccE
Confidence            344556666433 499999999999999999999988764 4455555554444333344445566777777777665  


Q ss_pred             --------CCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee--
Q psy535           83 --------NPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR--  149 (460)
Q Consensus        83 --------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~--  149 (460)
                              .|. +.+.|++++..+...  .++.....+   .|.|.++..+|+|.|+|.|.|..|....+  +.|.+.  
T Consensus       127 l~c~~~~~~p~-~~i~W~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~v~~~  201 (317)
T 2y25_A          127 LYSFVTYYVED-LKVNWSHNGSAIRYS--DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT--VDLSGQAY  201 (317)
T ss_dssp             EEEEBSSCCSS-CEEEEEESSSBCCCC--SSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEE--EEECHHHH
T ss_pred             EEEEeccCCCC-cEEEEEECCEECCCC--CCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEE--EEEeeeec
Confidence                    444 489999999988642  333333333   49999999999999999999988765444  344322  


Q ss_pred             ------------------CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEec--c--
Q psy535          150 ------------------KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG--G--  207 (460)
Q Consensus       150 ------------------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~--~--  207 (460)
                                        .+|.+...+.....+..|+.+.|.|.+   .+.|.|.+.|++++..+....++.+..  +  
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~---~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~  278 (317)
T 2y25_A          202 DEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV---WGDPPPEVSWLKNEKALASDDHCNLKFEAGRT  278 (317)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEE---ECSSCCEEEEEESSSEECCCSSEEECCBTTTE
T ss_pred             cccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEE---ecCCCCEEEEEECCEeCCCCCcEEEEEcCCCE
Confidence                              123333333333367899999999999   789999999999666555555555543  2  


Q ss_pred             -eEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535          208 -NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       208 -~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                       .|.|.++...|.|.|+|.|.|..|.......|.|..
T Consensus       279 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  315 (317)
T 2y25_A          279 AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  315 (317)
T ss_dssp             EEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence             799999999999999999999999998888888863

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.96  E-value=9.3e-28  Score=219.10  Aligned_cols=223  Identities=22%  Similarity=0.384  Sum_probs=175.2

Q ss_pred             ccceEEEeeC-CeEEEeecCCCCCeeEEEEEEeCCCCc----ceeeeEEEEec------CCeeEE-cceeeeecceeeEE
Q psy535            8 LETRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEP----QAAQAYLNVEF------PAKVTF-TPTVQYLPFRLQGV   75 (460)
Q Consensus         8 ~~~r~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~   75 (460)
                      .++|..+..+ ++|.|.+++.+|+|.|+|.+.+..|..    .+..+.|.|..      +|.+.. .+....+.+|++++
T Consensus       147 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~  226 (382)
T 1cs6_A          147 ADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVT  226 (382)
T ss_dssp             CCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEE
T ss_pred             cCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEE
Confidence            3455555443 799999999999999999999977432    12234555432      344443 35567788999999


Q ss_pred             EEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCcee
Q psy535           76 VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFT  155 (460)
Q Consensus        76 l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~  155 (460)
                      |.|.+.+.|.+ .+.|++++..+...     .....+.|.|.++..+|+|.|+|.|.|..|..  ...+.|.|..+|.+.
T Consensus       227 l~C~~~g~p~~-~i~W~~~~~~~~~~-----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~~~  298 (382)
T 1cs6_A          227 LECFAFGNPVP-QIKWRKLDGSQTSK-----WLSSEPLLHIQNVDFEDEGTYECEAENIKGRD--TYQGRIIIHAQPDWL  298 (382)
T ss_dssp             EECEEEEESCC-EEEEEECCSCCSCC-----CSBSSSEEEECSCCGGGCEEEEEEEEETTEEE--EEEEEEEEEEEEEEE
T ss_pred             EEEEEccCCCC-EEEEEECCcccccE-----EecCCcEEEEccCChhhCEEEEEEEEcCCCeE--EEEEEEEEecCCCcc
Confidence            99999998765 79999988776421     11245679999999999999999999988874  445566667788887


Q ss_pred             eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeee
Q psy535          156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQ  235 (460)
Q Consensus       156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  235 (460)
                      ..+... .+..|+.++|.|.+   .|.|.+.+.|++++..+....++...++.|.|.++...|.|.|+|.|.|..|....
T Consensus       299 ~~~~~~-~~~~g~~~~l~C~~---~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  374 (382)
T 1cs6_A          299 DVITDT-EADIGSDLRWSCVA---SGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYA  374 (382)
T ss_dssp             ECCCCE-EEETTCCEEEECEE---EEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             cCCCcc-EEcCCCeEEEEEEe---eeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCCeEEE
Confidence            776665 67899999999999   78899999999966555555677777889999999999999999999999999998


Q ss_pred             eeEEEEe
Q psy535          236 AAQLVVE  242 (460)
Q Consensus       236 ~~~l~v~  242 (460)
                      ...|.|.
T Consensus       375 ~~~l~V~  381 (382)
T 1cs6_A          375 SAELTVQ  381 (382)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            8888775

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.95  E-value=1.2e-26  Score=220.60  Aligned_cols=297  Identities=14%  Similarity=0.114  Sum_probs=182.2

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE----ecCCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEee
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV----EFPAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTK   93 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~   93 (460)
                      .|.|.+++.+|+|.|+|.|.|..+.. ...+.+.+    ..+|.+...+....+.+|+.+.|.|.+.+. |.+..|+|++
T Consensus       179 ~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k  257 (523)
T 2rcj_C          179 YLSLTPEQWKSHRSYSCQVTHEGSTV-EKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNS  257 (523)
T ss_pred             EEEEechhcCCCceEEEEEEecCccc-ccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEec
Confidence            59999999999999999999987764 33333322    235555433333456789999999999887 5444799999


Q ss_pred             CCeecCccccccEEEee------cCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceee-CCCcccccCC
Q psy535           94 DKRLLEPYQTKDIVVMQ------NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTI-KPEAMYQRKV  166 (460)
Q Consensus        94 ~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~-~~~~~~~~~~  166 (460)
                      ++..+......... ..      .+.|.|.++..+| |.|+|.|.|..|.....  ..|.+...|.+.+ .|.....+..
T Consensus       258 ~g~~~~~~~~~~~~-~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~--~~l~v~~~P~~~~~~p~~~~~v~~  333 (523)
T 2rcj_C          258 GALTSGVHTFPAVL-QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD--KRVEPLSLPSVFLFPPKPKDTLMI  333 (523)
T ss_pred             CCcccceEeCCcEe-cCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceE--EecCCCcCceEEecCCCchhhccc
Confidence            99875432212211 12      2379999999999 99999999998876444  3444444555433 3332212678


Q ss_pred             CCeEEEEeeeeccCCCCC----CeeEEEcCCCccCCcccE---E------EecceEEEccccceeceEEEEEEeccccee
Q psy535          167 GESVDMHCEAQEAEGTQK----PTITWQRRDGVALPKNRV---K------IVGGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~----~~~~W~~~~~~~~~~~~~---~------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      |+.+.|.|.+   .|.++    +.+.|++++..+......   .      ...+.|.|..+...|.|.|+|.|.|..+..
T Consensus       334 g~~~~l~C~~---~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  410 (523)
T 2rcj_C          334 SRTPEVTCVV---VDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA  410 (523)
T ss_pred             CCceEEEEEE---ecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCC
Confidence            9999999999   56443    599999965443322211   1      112347888888899999999999987765


Q ss_pred             eeeeEEEEecCCCCCCCcee-----eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe-eeeeccCCCCc-----
Q psy535          234 VQAAQLVVEGTQPHAPYNIT-----GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW-LPIPVTPPGST-----  302 (460)
Q Consensus       234 ~~~~~l~v~~~~p~~p~~~~-----~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----  302 (460)
                      .....+.+......+|....     .......++|.|...  +.+++ .-.+.|++++..... ...........     
T Consensus       411 ~~~~~~~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~~~--g~~p~-~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~  487 (523)
T 2rcj_C          411 PIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVK--GFYPS-DIAVEWESNGQPENNYKTTPPVLDSDGSFFLY  487 (523)
T ss_pred             ceeEEEEcccCCCCCCEEEEeCCChHHccCCceEEEEEEE--eeECC-CCEEEEEECCEECCCeeeccceeCCCCCEEEE
Confidence            44444432111122222111     011233488888743  32222 113678877543211 11111111111     


Q ss_pred             -eEEEccCccCccEEEEEEEEcCCC
Q psy535          303 -QITINRLTPATTYEFQVVGKNELG  326 (460)
Q Consensus       303 -~~~i~~l~~~~~~~~~~~a~n~~G  326 (460)
                       .+.+......+.|.|.|.|.|...
T Consensus       488 ~~l~v~~~~~~~~g~Y~C~a~n~~l  512 (523)
T 2rcj_C          488 SKLTVDKSRWQQGNVFSCSVMHEAL  512 (523)
T ss_pred             EEEEEChHHccCCCeEEEEEEcCCc
Confidence             233443444668999999999864

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.95  E-value=3.5e-28  Score=215.52  Aligned_cols=228  Identities=14%  Similarity=0.246  Sum_probs=164.7

Q ss_pred             CcccCcccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec------------CCeeEEcce-e
Q psy535            2 NTKVGSLETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF------------PAKVTFTPT-V   65 (460)
Q Consensus         2 ~~~~~~~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~------------~p~~~~~~~-~   65 (460)
                      |+.....+.|+.+..+|   +|.|.+++.+|+|.|+|.|.|..|..  ....|.|..            +|.+...+. .
T Consensus        39 ~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~--~s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~  116 (312)
T 2y23_A           39 DYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIA--SSYLIDEEELKRLLALSHEHKFPTVPVKSELA  116 (312)
T ss_dssp             TTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCC--EEEEECHHHHHHHHHHHHHHHSCBCCEEEEEE
T ss_pred             CCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcE--EEEEEEEeeeeeeecccccCCCCccccccCCc
Confidence            34445567788887765   99999999999999999999988854  356666643            566555443 7


Q ss_pred             eeecceeeEEEEEEEe-cCCCCCeEEEeeCCeecCccccccEEEeec---C--eEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535           66 QYLPFRLQGVVQCHIK-ANPTFQYVTWTKDKRLLEPYQTKDIVVMQN---G--SLLFTRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~--~l~i~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                      ..+.+|+++.|.|.+. +.|. +.+.|++++..+...  .++.+..+   +  .|.|.++..+|+|.|+|.+.+..+.  
T Consensus       117 ~~v~~G~~v~l~C~~~~~~p~-~~v~W~~~~~~i~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--  191 (312)
T 2y23_A          117 VEILEKGQVRFWMQAEKLSGN-AKVNYIFNEKEIFEG--PKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT--  191 (312)
T ss_dssp             EEECSSSCEEEEEEESCCCSS-CEEEEEETTEEECSS--SSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCE--
T ss_pred             eEEeeCCCEEEEEEEEeCCCC-CEEEEEECCEECeeC--CcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCce--
Confidence            7888999999999998 6665 489999999998743  33333332   2  3999999999999999999864332  


Q ss_pred             eeeEEEEE-------------------eeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCc
Q psy535          140 SSGQMEVL-------------------VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPK  199 (460)
Q Consensus       140 ~~~~~~v~-------------------v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~  199 (460)
                      ....+.+.                   ...+|.+.....  ..+..|+.+.|.|.+   .+.|.+ .+.|++++..+...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~v~~G~~~~l~C~~---~~~p~~~~v~W~~~g~~~~~~  266 (312)
T 2y23_A          192 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS--WEVTGECNVLLKCKV---ANIKKETHIVWYKDEREISVD  266 (312)
T ss_dssp             EEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEE--EEEETTTEEEEEEEE---ESCCSSCEEEEEETTEEEEEE
T ss_pred             EEEEEEEcchhhhhhcccccccccchhhccCCceeecce--EEEeCCCEEEEEEEE---cCCCCCCEEEEeeCCEECCCC
Confidence            22222221                   012344332222  267899999999999   688887 99999954433323


Q ss_pred             ccEEEec--ceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          200 NRVKIVG--GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       200 ~~~~~~~--~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      .+.....  ..|.|.++...|+|.|+|.|.|..|.......|.+
T Consensus       267 ~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          267 EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             CCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred             CcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence            3333322  47999999999999999999999999888887754

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.95  E-value=1.3e-27  Score=215.18  Aligned_cols=230  Identities=17%  Similarity=0.213  Sum_probs=143.0

Q ss_pred             ccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeE----EcceeeeecceeeEEEEEEE---
Q psy535            8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT----FTPTVQYLPFRLQGVVQCHI---   80 (460)
Q Consensus         8 ~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~----~~~~~~~~~~g~~~~l~C~~---   80 (460)
                      ...|+.. .+++|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|..++.+.    ..|....+.+|+++.|.|.+   
T Consensus        70 ~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  147 (349)
T 4dep_C           70 PENRISK-EKDVLWFRPTLLNDTGNYTCMLRNTTYCS-KVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDG  147 (349)
T ss_dssp             GGGCEEE-ETTEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTT
T ss_pred             cCceEee-cCCEEEEccCChhhCEEEEEEEecCCceE-EEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcc
Confidence            3455554 56799999999999999999999987764 567888887655422    23456678889999999985   


Q ss_pred             --ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc--eeeEEEEEeeC------
Q psy535           81 --KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG--SSGQMEVLVRK------  150 (460)
Q Consensus        81 --~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~--~~~~~~v~v~~------  150 (460)
                        .+.|.+ .++|+|++..+..  ..+ ....+..|.|.++..+|+|.|+|.|.|..+...  .+..+.|.|..      
T Consensus       148 ~~~g~p~~-~v~W~k~~~~l~~--~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~  223 (349)
T 4dep_C          148 YFPSSVKP-TITWYMGCYKIQN--FNN-VIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAV  223 (349)
T ss_dssp             SSCTTSCC-EEEEEETTEECCS--CSS-EEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCC
T ss_pred             cccCCCCc-eEEEeeCCEECCC--ccc-eeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCC
Confidence              555655 8999999998853  222 233446799999999999999999999764332  46677777765      


Q ss_pred             CCceeeCCCcc-cccCCCCeEEEEeeeecc-CCCCCCeeEEEcCCCccCC-cccEEE-------------ecceEEEccc
Q psy535          151 PPAFTIKPEAM-YQRKVGESVDMHCEAQEA-EGTQKPTITWQRRDGVALP-KNRVKI-------------VGGNITIEGL  214 (460)
Q Consensus       151 ~p~~~~~~~~~-~~~~~g~~~~l~C~~~~~-~~~p~~~~~W~~~~~~~~~-~~~~~~-------------~~~~l~i~~~  214 (460)
                      +|.+...+... ..+..|+.++|.|.+... .+.|.+.+.|++++..+.. ..+...             ....|.|.++
T Consensus       224 ~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  303 (349)
T 4dep_C          224 PPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKV  303 (349)
T ss_dssp             SCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-----
T ss_pred             CCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeec
Confidence            45554433322 257789999999998310 0578899999995543322 111111             2335899999


Q ss_pred             cceec-eEEEEEEecccceeeeeeEEEEec
Q psy535          215 RRVDF-GYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       215 ~~~~~-g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      ...|. |.|+|.|.|..|.......|.|..
T Consensus       304 ~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          304 TSEDLKRSYVCHARSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             --------CEEEEECSSCEEEEECC-----
T ss_pred             cHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence            99999 999999999999999888888864

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.95  E-value=1.5e-27  Score=222.07  Aligned_cols=311  Identities=15%  Similarity=0.136  Sum_probs=188.2

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEec----CCeeEEcceeeeecceeeEEE
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQGVV   76 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l   76 (460)
                      ..+|+.+..+     ++|.|.+++.+|+|.|+|.|.+..+.  .....+.|.|..    +|.+...+....+.+|+.++|
T Consensus        64 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L  143 (444)
T 1igt_B           64 VKGRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTL  143 (444)
T ss_dssp             GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEE
T ss_pred             cCCceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEE
Confidence            4579998763     48999999999999999999987654  123446778763    344433332233578999999


Q ss_pred             EEEEecC-CCCCeEEEeeCCeecCccccccEE----EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE-----
Q psy535           77 QCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIV----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV-----  146 (460)
Q Consensus        77 ~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v-----  146 (460)
                      .|.+.+. |.+..|.|++++..+.........    ....+.|.|.++..+| |.|+|.|.|..+.......+.+     
T Consensus       144 ~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~  222 (444)
T 1igt_B          144 GCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTI  222 (444)
T ss_dssp             EEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSC
T ss_pred             EEEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCc
Confidence            9999886 544489999998764211111111    1112468999999899 9999999998887533333322     


Q ss_pred             -----------EeeCCCceeeCCCcccc-cCCCCeEEEEeeeeccCCC---C-CCeeEEEcCCCccCCcc---cEE----
Q psy535          147 -----------LVRKPPAFTIKPEAMYQ-RKVGESVDMHCEAQEAEGT---Q-KPTITWQRRDGVALPKN---RVK----  203 (460)
Q Consensus       147 -----------~v~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~~~~---p-~~~~~W~~~~~~~~~~~---~~~----  203 (460)
                                 .+..+|.+...+..... +..|+.++|.|.+   .|.   | .+.+.|++++.......   ...    
T Consensus       223 ~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~---~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~  299 (444)
T 1igt_B          223 KPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVV---VDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNS  299 (444)
T ss_dssp             CCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEE---EEECTTCCCCEEEEEETTEECSSTTCBCCEEECSS
T ss_pred             ccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEE---eecccCCCCeEEEEEECCccccCcccccceeCCCC
Confidence                       11224554333333222 5889999999999   455   2 46999999654332211   111    


Q ss_pred             --EecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCcee-e----eeecceEEEEeecCCCCCCCce
Q psy535          204 --IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNIT-G----VATEFSVTLEWLPGYSGGPDLK  276 (460)
Q Consensus       204 --~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~-~----~~~~~~~~l~w~~~~~~~~~~~  276 (460)
                        ...+.|.|.++...|.|.|+|.|.|..+.......+.+......+|.... .    ......++|.|..... .+++ 
T Consensus       300 ~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~-~P~~-  377 (444)
T 1igt_B          300 TLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDF-MPED-  377 (444)
T ss_dssp             SEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEE-BSSC-
T ss_pred             cEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEEEee-eCCC-
Confidence              12347999999999999999999998886533333322111222332211 1    1123358888874211 1222 


Q ss_pred             eeEEEEEEecCCCCee-eeec--cCCCC----ceEEEccCccCccEEEEEEEEcCC
Q psy535          277 QNYVIWYREQGNKDWL-PIPV--TPPGS----TQITINRLTPATTYEFQVVGKNEL  325 (460)
Q Consensus       277 ~~~~~~~~~~~~~~~~-~~~~--~~~~~----~~~~i~~l~~~~~~~~~~~a~n~~  325 (460)
                       -.+.|++++...... ....  ...+.    ..+.+......+.|.|.|.|.|..
T Consensus       378 -~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~  432 (444)
T 1igt_B          378 -IYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG  432 (444)
T ss_dssp             -CEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             -CEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCC
Confidence             136788875432111 1111  11111    123344444445899999999975

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.95  E-value=1.7e-27  Score=210.09  Aligned_cols=266  Identities=21%  Similarity=0.332  Sum_probs=174.0

Q ss_pred             ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec---CeEEEeecCC-CCCeEEEE
Q psy535           54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN---GSLLFTRVNQ-NHQGRYTC  129 (460)
Q Consensus        54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~-~d~G~y~C  129 (460)
                      ..+|.|...|....+.+|++++|.|.+.+.|.+ .|+|+++|..+... ........+   ..|.|.++.. +|+|.|+|
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~-~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C   81 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKP-RVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYEC   81 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEECSSCC-EEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEEeCCC-eEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEE
Confidence            457888888988999999999999999988766 89999999887531 111111222   3699999998 99999999


Q ss_pred             EEEcCCCCcceeeEEEEEeeCC-------CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc---
Q psy535          130 TPYNAHGTQGSSGQMEVLVRKP-------PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK---  199 (460)
Q Consensus       130 ~~~~~~g~~~~~~~~~v~v~~~-------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~---  199 (460)
                      .|.|..|.......  |.|..+       |.+...+... .+..|+.+.|.|.+   .+.|.+.+.|++++......   
T Consensus        82 ~a~n~~g~~~~~~~--l~V~~~~~~p~~~p~i~~~~~~~-~v~~g~~v~l~C~~---~g~p~~~v~W~k~~~~~~~~~~~  155 (304)
T 2yd9_A           82 VAQNSVGEITVHAK--LTVLREDQLPSGFPNIDMGPQLK-VVERTRTATMLCAA---SGNPDPEITWFKDFLPVDPSASN  155 (304)
T ss_dssp             EEECSSCEECCEEE--EEEECGGGCCTTCCEEEECCCCE-EEETTSCEEECCEE---ECSSCCEEEEEETTEECCGGGGT
T ss_pred             EEECCCCeEEEEEE--EEEeccccCCCCCCeeecCCccE-EEeCCCeEEEEEEC---ccCCCCeEEEEECCEECcCCCCc
Confidence            99998887544444  444433       5666666554 67889999999999   78899999999954433221   


Q ss_pred             ccE-EEecceEEEccccceeceEEEEEEecccceeeee-eEEEEec--CCCC---CCCceeeeeecceEEEEeecCCCCC
Q psy535          200 NRV-KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVVEG--TQPH---APYNITGVATEFSVTLEWLPGYSGG  272 (460)
Q Consensus       200 ~~~-~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~-~~l~v~~--~~p~---~p~~~~~~~~~~~~~l~w~~~~~~~  272 (460)
                      .++ ...++.|.|.++...|.|.|+|.|.|..|..... ..+.+..  .+|.   .|.. .....+..+.|.|..  .+.
T Consensus       156 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~-~~v~~G~~v~l~C~~--~g~  232 (304)
T 2yd9_A          156 GRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMS-HEIMPGGNVNITCVA--VGS  232 (304)
T ss_dssp             TSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCC-BCCCTTCCEEEEEEE--EEE
T ss_pred             ceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCc-eEEcCCCeEEEEEEE--eee
Confidence            123 2235689999999999999999999998876533 4444432  1111   1111 112345678888874  334


Q ss_pred             CCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535          273 PDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK  337 (460)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~  337 (460)
                      +.+.   +.|++++.......  ....+...|.+.++  .+.|.|+|.|.|..|....+..+.+.
T Consensus       233 p~p~---v~W~~~~~~l~~~~--~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~  290 (304)
T 2yd9_A          233 PMPY---VKWMQGAEDLTPED--DMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVK  290 (304)
T ss_dssp             SCCE---EEEEETTEECSCSS--SCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC--
T ss_pred             CCCE---EEEEECCEECCCcc--cccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEe
Confidence            4443   67777653211100  01112334666665  57899999999999976555444443

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.95  E-value=4.9e-28  Score=216.68  Aligned_cols=237  Identities=22%  Similarity=0.311  Sum_probs=128.4

Q ss_pred             CcccCcccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC----------------------ee
Q psy535            2 NTKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA----------------------KV   59 (460)
Q Consensus         2 ~~~~~~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p----------------------~~   59 (460)
                      |+.....++|+.+ .+++|.|.+++.+|+|.|+|.|.|. |.. +..+.|.|..++                      .+
T Consensus        46 ~g~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~  122 (334)
T 1ry7_B           46 DGTGLVPSERVLV-GPQRLQVLNASHEDSGAYSCRQRLT-QRV-LCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYW  122 (334)
T ss_dssp             ----------------------------------------------------------------------------CCCC
T ss_pred             CCeeCCCcccEEe-ccceEEEeecccccCEEEEEEEEeC-CeE-EEEEEEEEeccCccccccccccccccccccCCCCEE
Confidence            3344455667776 5679999999999999999999998 543 566777776432                      22


Q ss_pred             EE----cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcccccc--EEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535           60 TF----TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD--IVVMQNGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        60 ~~----~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      ..    .+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.......  ........|.|.++..+|+|.|+|.|.|
T Consensus       123 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  201 (334)
T 1ry7_B          123 TRPERMDKKLLAVPAANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN  201 (334)
T ss_dssp             SCCTTCCCCEEEEETTCCEEEECCCCCSSCC-EEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEE
T ss_pred             eccccccceeEEecCCCcEEEEEEccCCCCC-eEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEe
Confidence            21    1233567789999999999988765 799999998876432111  1112345799999999999999999999


Q ss_pred             CCCCcceeeEEEEEeeC--CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcC----CCccCCccc--EEEe
Q psy535          134 AHGTQGSSGQMEVLVRK--PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR----DGVALPKNR--VKIV  205 (460)
Q Consensus       134 ~~g~~~~~~~~~v~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~----~~~~~~~~~--~~~~  205 (460)
                      ..|.......+.|....  +|.+.........+..|+.+.|.|.+   .+.|.+.+.|++.    +........  ....
T Consensus       202 ~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~---~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~  278 (334)
T 1ry7_B          202 KFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV---YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVL  278 (334)
T ss_dssp             TTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCC---BCSSCEEEEEEECCCGGGCSBCTTSSBCCCCC
T ss_pred             CCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEE---ecCCCCeEEEEECCcCCCccccCCCCeeEEEe
Confidence            88875444444443221  23333222122367889999999998   7899999999983    322221111  1110


Q ss_pred             -----------cceEEEccccceeceEEEEEEecccceeeeeeEEEEecCC
Q psy535          206 -----------GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ  245 (460)
Q Consensus       206 -----------~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~  245 (460)
                                 ...|.|.++...|.|.|+|.|.|..|....+..|.|...+
T Consensus       279 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  329 (334)
T 1ry7_B          279 KTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE  329 (334)
T ss_dssp             CCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSC
T ss_pred             ecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECC
Confidence                       1269999999999999999999999999999999887543

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.95  E-value=1.8e-27  Score=208.84  Aligned_cols=217  Identities=18%  Similarity=0.201  Sum_probs=163.5

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe-eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC-Ce
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK-VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD-KR   96 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~-~~   96 (460)
                      +|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|..++. +...+....+.+|+++.|.|.+.+.+..+.++|+++ +.
T Consensus        52 ~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~  130 (292)
T 4dkd_C           52 ILSTNNATFQNTGTYRCTEPGDPLGG-SAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGR  130 (292)
T ss_dssp             EEEESSCCGGGCSCEEECCCC----C-CEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGC
T ss_pred             EEEEcccccccCEEEEEEEccCCCCc-ceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCC
Confidence            99999999999999999999987775 7788899988776 355677788889999999999987322247999997 44


Q ss_pred             ecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC----CCceeeCCCcccccCCCCeEEE
Q psy535           97 LLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDM  172 (460)
Q Consensus        97 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~----~p~~~~~~~~~~~~~~g~~~~l  172 (460)
                      .+.  ...++....++.|.|.++..+|+|.|+|.+.|..+.. .+..+.|.|..    +|.+...+... .+..|+.+.|
T Consensus       131 ~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~~~~~p~i~~~~~~~-~~~~g~~v~l  206 (292)
T 4dkd_C          131 PLM--RHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKV-MSISIRLKVQKVIPGPPALTLVPAEL-VRIRGEAAQI  206 (292)
T ss_dssp             CCC--SSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCE-ECCCEEEEEECCCCSSCEEEEESSCB-CCCSSSCEEE
T ss_pred             ccc--cCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCce-eEEEEEEEEeCCCCCCCeEEccCCce-eEecCCCEEE
Confidence            443  3344555556679999999999999999999876644 34466677765    88888877765 5679999999


Q ss_pred             EeeeeccCCCC-CCeeEEEcCCCccCCcccEEE------ecceEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535          173 HCEAQEAEGTQ-KPTITWQRRDGVALPKNRVKI------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       173 ~C~~~~~~~~p-~~~~~W~~~~~~~~~~~~~~~------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      .|.+   .+.| .+.+.|.+++...........      ....|.|.++...|.|.|+|.|.|..|....+..|.|..
T Consensus       207 ~C~~---~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  281 (292)
T 4dkd_C          207 VCSA---SSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE  281 (292)
T ss_dssp             EEEE---EESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             EEEe---cCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence            9999   4544 457888875443322222211      234799999999999999999999999998888887764

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.95  E-value=3.4e-26  Score=202.03  Aligned_cols=267  Identities=22%  Similarity=0.366  Sum_probs=191.5

Q ss_pred             CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-ccEEEe---cc--eEEEccccceeceEEE
Q psy535          150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRVKIV---GG--NITIEGLRRVDFGYYE  223 (460)
Q Consensus       150 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~---~~--~l~i~~~~~~~~g~y~  223 (460)
                      .+|.+...+... .+..|+.++|.|.+   .+.|.+.+.|++++...... .+....   ++  .|.|.++...|.|.|+
T Consensus         3 ~~P~~~~~p~~~-~v~~G~~v~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~   78 (305)
T 2nzi_A            3 MAPHFKEELRNL-NVRYQSNATLVCKV---TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQ   78 (305)
T ss_dssp             CCCEEEECCCCE-EECTTCCEEEEEEE---ECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEE
T ss_pred             CCCeeeecccce-EEeCCCcEEEEEEE---eCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEE
Confidence            367777777765 78999999999999   68899999999955444322 233332   22  7999999999999999


Q ss_pred             EEEecccceeeeeeEEEEecCCC-CCCCc-----eeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCC---Ceeee
Q psy535          224 CVVSNEVATIVQAAQLVVEGTQP-HAPYN-----ITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK---DWLPI  294 (460)
Q Consensus       224 C~a~n~~g~~~~~~~l~v~~~~p-~~p~~-----~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  294 (460)
                      |.+.|..|.......|.|..++. ..|..     ......+..+.|.|..  .+.+.+   -+.|++++...   .....
T Consensus        79 C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~g~p~p---~i~W~~~~~~~~~~~~~~~  153 (305)
T 2nzi_A           79 VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF--SGKPDP---VITWQKGQDLIDNNGHYQV  153 (305)
T ss_dssp             EEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEE--EEESCC---EEEEEESSSBCCSSSSCEE
T ss_pred             EEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEE--CCCCCC---EEEEEECCEECCCCCcEEE
Confidence            99999999888888887764321 11111     1112335678888874  333443   26777765421   11111


Q ss_pred             eccCCCCceEEEcc-CccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCC-Ccc
Q psy535          295 PVTPPGSTQITINR-LTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLER-ASL  371 (460)
Q Consensus       295 ~~~~~~~~~~~i~~-l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~-~~~  371 (460)
                      . .......+.|.+ +...+.|.|+|.|.|..|....+..+.+.   .+|.+|.++.+.... +++.|+|.+|... +.+
T Consensus       154 ~-~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~---~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~  229 (305)
T 2nzi_A          154 I-VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA---DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSK  229 (305)
T ss_dssp             E-ECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEE---BCCCCCEEEEEESCCSSCEEEEEECCSCCSBSC
T ss_pred             E-EcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEe---cCCCCCCCceeeeccCCEEEEEEcCCccCCCCc
Confidence            1 112346788998 99999999999999999987666666665   348889998888765 6999999987543 558


Q ss_pred             ceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCC
Q psy535          372 IQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGML  451 (460)
Q Consensus       372 i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~  451 (460)
                      +..|.++++....                         ..|......  ....+.|.+|.+++.|.|+|.|.|..|.|++
T Consensus       230 i~~y~v~~~~~~~-------------------------~~w~~~~~~--~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~  282 (305)
T 2nzi_A          230 ITNYIVEKCATTA-------------------------ERWLRVGQA--RETRYTVINLFGKTSYQFRVIAENKFGLSKP  282 (305)
T ss_dssp             EEEEEEEEEETTS-------------------------CCEEEEEEE--SSSEEEECSCCSSCEEEEEEEEEETTEECCC
T ss_pred             eeEEEEEEecCCC-------------------------CccEECccc--cCceEEecCCCCCCeEEEEEEEEeCCcccCC
Confidence            9999999987542                         123332221  2578999999999999999999999999999


Q ss_pred             CceeE
Q psy535          452 SNIVV  456 (460)
Q Consensus       452 s~~~~  456 (460)
                      |....
T Consensus       283 S~~~~  287 (305)
T 2nzi_A          283 SEPSE  287 (305)
T ss_dssp             CCCCC
T ss_pred             cCCCC
Confidence            88654

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.95  E-value=9e-27  Score=208.23  Aligned_cols=227  Identities=19%  Similarity=0.256  Sum_probs=170.9

Q ss_pred             CcccceEEEe----eCCeEEEeecCCCCCeeEEEEEE-eCCCCcceeeeEEEEecCCeeEE--cceeeeecce---eeEE
Q psy535            6 GSLETRVVIK----KDGTLVINPVGSDDSGLYMCEVS-NGIGEPQAAQAYLNVEFPAKVTF--TPTVQYLPFR---LQGV   75 (460)
Q Consensus         6 ~~~~~r~~~~----~~~~L~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~~g---~~~~   75 (460)
                      ....+|+.+.    .+++|.|.+++.+|+|.|+|.+. +..+. ....+.|.|..+|.+..  .+....+.+|   +.+.
T Consensus        76 ~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~  154 (331)
T 3u83_A           76 APYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGN-RESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLV  154 (331)
T ss_dssp             TTCTTTEEESSCSSSBCCEEECSCCGGGCEEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEE
T ss_pred             cccCCceEecccCCCCceEEEcccCcccCcEEEEEEEecCCCc-cEEEEEEEEecCCcceeecCCCceeecCCCccceEE
Confidence            3566888876    24689999999999999999855 44444 47788999998887643  4555667777   7799


Q ss_pred             EEEE-EecCCCCCeEEEeeCCeecCc-----cccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535           76 VQCH-IKANPTFQYVTWTKDKRLLEP-----YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR  149 (460)
Q Consensus        76 l~C~-~~~~~~~~~v~W~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~  149 (460)
                      |.|. +.+.|.+ .++|++++.....     ......  .....|.|.++..+|+|.|+|.|.|..|..  +..+.|.|.
T Consensus       155 l~C~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~--~~~~~l~V~  229 (331)
T 3u83_A          155 ATCTSANGKPPS-VVSWETRLKGEAEYQEIRNPNGTV--TVISRYRLVPSREAHQQSLACIVNYHMDRF--KESLTLNVQ  229 (331)
T ss_dssp             EEEEEEEEBSCC-EEEEEESSCCEEEEEEEECTTSCE--EEEEEEEECCCGGGTTCEEEEEEEETTEEE--EEEEECCEE
T ss_pred             EEEEecCCcCCc-eEEEEcCCCCccccceeECCCCcE--EEEEEEEEEeccccCCCEEEEEEecCCCcc--eeeEEEEEe
Confidence            9997 7777765 8999995332210     001111  112358888889999999999999987764  455666677


Q ss_pred             CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCe-eEEEcCCCccCCcccEEEecceEEEc-cccceeceEEEEEEe
Q psy535          150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVALPKNRVKIVGGNITIE-GLRRVDFGYYECVVS  227 (460)
Q Consensus       150 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~l~i~-~~~~~~~g~y~C~a~  227 (460)
                      .+|.+.+.+.....+..|+.++|.|.+   .+.|.|. +.|+++++.+ .. .....++.|.|. ++...|.|.|+|.|.
T Consensus       230 ~~P~~~~~~~~~~~~~~g~~~~l~C~~---~g~p~p~~i~W~~~~~~~-~~-~~~~~~~~L~i~~~v~~~d~G~Y~C~a~  304 (331)
T 3u83_A          230 YEPEVTIEGFDGNWYLQRMDVKLTCKA---DANPPATEYHWTTLNGSL-PK-GVEAQNRTLFFKGPINYSLAGTYICEAT  304 (331)
T ss_dssp             EEEEEEEECCCSCCBTTCCCEEEEEEE---EEESCCCEEEEEETTBSC-CT-TEEEETTEEEECSCCCGGGCEEEEEEEE
T ss_pred             cCCeEEEecCCCceEeCCCeEEEEEeC---cCCCCCCEEEEEECCCcc-cc-cceecCcEEEEeCCCccccCeEEEEEEE
Confidence            788777655444467889999999999   6889898 9999955543 22 244567889999 899999999999999


Q ss_pred             cccceeeeeeEEEEec
Q psy535          228 NEVATIVQAAQLVVEG  243 (460)
Q Consensus       228 n~~g~~~~~~~l~v~~  243 (460)
                      |..|.....+.|.|..
T Consensus       305 N~~G~~~~~~~l~V~~  320 (331)
T 3u83_A          305 NPIGTRSGQVEVNITE  320 (331)
T ss_dssp             ETTEEEEEEEEECCBC
T ss_pred             eccccceEEEEEEEec
Confidence            9999998888888764

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.95  E-value=1.5e-27  Score=211.68  Aligned_cols=227  Identities=18%  Similarity=0.257  Sum_probs=167.8

Q ss_pred             ccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe-cCCeeEEcc---eeeeecceeeEEEEEEE---
Q psy535            8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE-FPAKVTFTP---TVQYLPFRLQGVVQCHI---   80 (460)
Q Consensus         8 ~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~-~~p~~~~~~---~~~~~~~g~~~~l~C~~---   80 (460)
                      .+.|+.+. +++|.|.+++.+|+|.|+|.|.|..|.. ...+.+.|. .+|.+...+   ....+.+|+++.|.|.+   
T Consensus        53 ~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  130 (315)
T 1itb_B           53 QASRIHQH-KEKLWFVPAKVEDSGHYYCVVRNSSYCL-RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEF  130 (315)
T ss_dssp             TTSSSEEC-SSBEECTTCCGGGCSCCEECCCSSSCCC-CEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTT
T ss_pred             cCCcEecc-CCeEEECCCChhhCEEEEEEEeCCceEE-EEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccc
Confidence            45667664 5699999999999999999999988764 444455543 345443322   23567789999999998   


Q ss_pred             ---ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEE-cCCCCcce-eeEEEEEee-----C
Q psy535           81 ---KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY-NAHGTQGS-SGQMEVLVR-----K  150 (460)
Q Consensus        81 ---~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~-~~~g~~~~-~~~~~v~v~-----~  150 (460)
                         .+.|.+ .++|+|++..+... ..+ ....++.|.|.++..+|+|.|+|.|. |..|.... ...+.+.+.     .
T Consensus       131 ~~~~g~p~~-~i~W~k~~~~l~~~-~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~  207 (315)
T 1itb_B          131 FKNENNELP-KLQWYKDCKPLLLD-NIH-FSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPT  207 (315)
T ss_dssp             TCTTTTCCC-CCEEEETTEECCCC-SSS-EEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCC
T ss_pred             cccCCCCCC-EEEEEECCEECCCc-cce-EeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCC
Confidence               677665 79999999998642 223 34567789999999999999999999 67776522 334444333     5


Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc------cEEE----------ecceEEEccc
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN------RVKI----------VGGNITIEGL  214 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~------~~~~----------~~~~l~i~~~  214 (460)
                      +|.+...+.....+..|+.+.|.|.+   .+.|.|.+.|++++..+....      ....          ....|.|.++
T Consensus       208 ~P~~~~~~~~~~~~~~g~~v~l~C~~---~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  284 (315)
T 1itb_B          208 RPVIVSPANETMEVDLGSQIQLICNV---TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEI  284 (315)
T ss_dssp             CCEECSCCSEEEECCSSSCEEEEEEE---EECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSC
T ss_pred             CCEEecCCCCcEEEeCCCcEEEEEEE---ecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeec
Confidence            67776555543468899999999999   689999999999543332221      1111          2237999999


Q ss_pred             ccee-ceEEEEEEecccceeeeeeEEEEe
Q psy535          215 RRVD-FGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       215 ~~~~-~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                      ...| .|.|+|.|.|..|.....+.|.+.
T Consensus       285 ~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          285 ESRFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             CGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             CHHHcCCceEEEEecCCCceeEEEEEEec
Confidence            9999 999999999999999988888764

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.95  E-value=9.5e-30  Score=253.91  Aligned_cols=313  Identities=19%  Similarity=0.307  Sum_probs=0.0

Q ss_pred             eEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEecCCeeEEcc---eeeeecceeeEEEEEEEecCCCC
Q psy535           11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVEFPAKVTFTP---TVQYLPFRLQGVVQCHIKANPTF   86 (460)
Q Consensus        11 r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~---~~~~~~~g~~~~l~C~~~~~~~~   86 (460)
                      ++.+..++.|.|.+++.+|+|.|+|.|.|..|.. .+..+.|.|..+|.+....   ....+.+|+.++|.|.+.+.|.+
T Consensus       374 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p  453 (772)
T 3v2a_R          374 NHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPP  453 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCC
Confidence            4444455799999999999999999999988753 2456778888888764321   11237789999999999998876


Q ss_pred             CeEEEeeCCee--------------------------------cCccccccEEEee-----cCeEEEeecCCCCCeEEEE
Q psy535           87 QYVTWTKDKRL--------------------------------LEPYQTKDIVVMQ-----NGSLLFTRVNQNHQGRYTC  129 (460)
Q Consensus        87 ~~v~W~~~~~~--------------------------------~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C  129 (460)
                      ..++|++++..                                +... ..+.....     ...|.|.++  +|+|.|+|
T Consensus       454 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C  530 (772)
T 3v2a_R          454 HHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVN-KNQFALIEGKNKTVSTLVIQAA--NVSALYKC  530 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEe-ccceeeccCcceEEEEEEEeec--ccCeEEEE
Confidence            44999997432                                1100 01111111     135777766  79999999


Q ss_pred             EEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-----
Q psy535          130 TPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-----  204 (460)
Q Consensus       130 ~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-----  204 (460)
                      .|.|..|....  .+.|.|..+|.+...+..  .+..|+.+.|.|.+   .+.|.+.+.|++++...........     
T Consensus       531 ~a~N~~g~~~~--~~~l~V~~~p~i~~~p~~--~~~~G~~v~l~C~~---~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~  603 (772)
T 3v2a_R          531 EAVNKVGRGER--VISFHVTRGPEITLQPDM--QPTEQESVSLWCTA---DRSTFENLTWYKLGPQPLPIHVGELPTPVC  603 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEccccccce--eEEEEEECCceeeccCCc--ccccCCceEEEEec---cCCCCCCcEEEEcCCcccccccCccccccc
Confidence            99999887644  455556668877766653  46789999999999   7889999999996554332111100     


Q ss_pred             --------------ec-----ceEEEccccceeceEEEEEEecccceee--eeeEEEEec-CCCCCCCcee--eeeecce
Q psy535          205 --------------VG-----GNITIEGLRRVDFGYYECVVSNEVATIV--QAAQLVVEG-TQPHAPYNIT--GVATEFS  260 (460)
Q Consensus       205 --------------~~-----~~l~i~~~~~~~~g~y~C~a~n~~g~~~--~~~~l~v~~-~~p~~p~~~~--~~~~~~~  260 (460)
                                    ..     ..|.|.++...|+|.|+|.|.|..+...  ....+.|.. .+|.......  ....+..
T Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~  683 (772)
T 3v2a_R          604 KNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGES  683 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCC
Confidence                          01     2389999999999999999999655433  233444421 1221111111  1233556


Q ss_pred             EEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEc
Q psy535          261 VTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  338 (460)
Q Consensus       261 ~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~  338 (460)
                      +.|.|..  .+.+.+.   +.|++++.............+...|.|.++...+.|.|+|.|.|..|....+..+.+..
T Consensus       684 ~~l~C~~--~g~P~p~---v~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~  756 (772)
T 3v2a_R          684 IEVSCTA--SGNPPPQ---IMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG  756 (772)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             EEEEEEe--CccCCCe---EEEEECCeECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEEC
Confidence            7888873  4445443   67888765322111111112356899999999999999999999999887777777753

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.95  E-value=4e-25  Score=207.22  Aligned_cols=308  Identities=15%  Similarity=0.143  Sum_probs=186.4

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC-----cceeeeEEEEec----CCeeEEcceeeeecceee
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE-----PQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQ   73 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~   73 (460)
                      ..+|+++..+     ++|.|.+++.+|+|.|+|.+.+..|.     .....+.|.|..    +|.+...+.. .+.+|+.
T Consensus        65 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~g~~  143 (475)
T 1iga_A           65 FRGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLC-STQPDGN  143 (475)
T ss_pred             cCCceEEEEcCCCCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCcc-ccCCCCe
Confidence            4689998764     38999999999999999999997652     123456777763    3444433221 2368999


Q ss_pred             EEEEEEEecC-CC-CCeEEEeeCCeecCccccccEE------EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           74 GVVQCHIKAN-PT-FQYVTWTKDKRLLEPYQTKDIV------VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        74 ~~l~C~~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      ++|.|.+.+. |. +..|.|++++............      ....+.|.|..+..+|+|.|+|.|.|..+.. .+..+.
T Consensus       144 v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~-~~~~v~  222 (475)
T 1iga_A          144 VVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS-QDVTVP  222 (475)
T ss_pred             EEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCc-eeeeEe
Confidence            9999999987 43 3489999988543211111110      0112358888888899999999999987642 344444


Q ss_pred             EEee------------------CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC---CeeEEEcCCCccCCccc---
Q psy535          146 VLVR------------------KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK---PTITWQRRDGVALPKNR---  201 (460)
Q Consensus       146 v~v~------------------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~---~~~~W~~~~~~~~~~~~---  201 (460)
                      +.|.                  .+|.+...+.....+..|+.++|.|.+   .+.++   +.+.| . ++.......   
T Consensus       223 l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~---~g~~p~~~~~i~W-~-~~~~~~~~~~~~  297 (475)
T 1iga_A          223 CPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTL---TGLRDASGVTFTW-T-PSSGKSAVQGPP  297 (475)
T ss_pred             cccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEE---EcccCCCceEEEE-C-CCCcCCccccCc
Confidence            3331                  244443333222245789999999998   45533   69999 4 433321110   


Q ss_pred             E------EEecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCce-ee-----eeecceEEEEeecCC
Q psy535          202 V------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNI-TG-----VATEFSVTLEWLPGY  269 (460)
Q Consensus       202 ~------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~-~~-----~~~~~~~~l~w~~~~  269 (460)
                      .      ....+.|.|.++...|.|.|+|.|.|..|.......+.+.. ...+|... ..     ...+..+.|.|... 
T Consensus       298 ~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~-~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~-  375 (475)
T 1iga_A          298 ERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSG-NTFRPEVHLLPPPSEELALNELVTLTCLAR-  375 (475)
T ss_pred             eECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCC-CCCCCeEEEECCChHHhccCCceEEEEEEe-
Confidence            0      01234699999999999999999999988754444443211 12222211 11     12345688988743 


Q ss_pred             CCCCCceeeEEEEEEecCCCCee---eeeccCC---CC------ceEEEccCccCccEEEEEEEEcCCC
Q psy535          270 SGGPDLKQNYVIWYREQGNKDWL---PIPVTPP---GS------TQITINRLTPATTYEFQVVGKNELG  326 (460)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~------~~~~i~~l~~~~~~~~~~~a~n~~G  326 (460)
                       +.+++ ..-+.|++++......   .......   ..      ..+.|......+.+.|.|.|.|...
T Consensus       376 -g~~P~-~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l  442 (475)
T 1iga_A          376 -GFSPK-DVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  442 (475)
T ss_pred             -eeECC-CCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCC
Confidence             22221 1236788775422111   1100111   11      2355655556678999999999864

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.95  E-value=3e-25  Score=191.41  Aligned_cols=250  Identities=15%  Similarity=0.132  Sum_probs=178.3

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      |.+...|....+.+|+.+.|.|.+.+.|.+..++|+++|..+..         .+..|.|.++..+|+|.|+|.+.|..+
T Consensus         2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~   72 (262)
T 3rjd_A            2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT---------STPSYRITSASVNDSGEYRCQRGLSGR   72 (262)
T ss_dssp             CEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSC---------CSSEEEESSCCGGGCEEEEEEESSSCC
T ss_pred             CeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeec---------cCCeEEEecCCcccCeEEEEEEecCCc
Confidence            66778888888999999999999998876657999999998853         245799999999999999999987654


Q ss_pred             CcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccc
Q psy535          137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRR  216 (460)
Q Consensus       137 ~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~  216 (460)
                      ..    .+.|.|..++.. ..+... .+..|+.+.|.|.+.  .+.|.+.+.|++++. .+.   .......|.|.++..
T Consensus        73 s~----~~~l~v~~~~~~-~~~~~~-~~~~g~~v~l~C~~~--~~~p~~~v~W~~~g~-~~~---~~~~~~~l~i~~~~~  140 (262)
T 3rjd_A           73 SD----PIQLEIHRGWLL-LQVSSR-VFTEGEPLALRCHAW--KDKLVYNVLYYRNGK-AFK---FFHWNSNLTILKTNI  140 (262)
T ss_dssp             CC----CEEEEEECSSEE-EEESCS-EEETTSCEEEEEEEG--GGCCCEEEEEEETTE-EEE---EEEECCCEEESSCCG
T ss_pred             cc----cEEEEEeccceE-ecCCCe-EEecCCeEEEEEEcc--CCCCCceEEEEECCc-ccc---ccCCCCeEEEEECCh
Confidence            43    455666655543 333333 567899999999984  577888999999443 331   222356899999999


Q ss_pred             eeceEEEEEEecccceeeeeeEEEEecCCCCCCCcee----eeeecceEEEEeecCCCCCCC-ceee-EEEEEEecCCCC
Q psy535          217 VDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNIT----GVATEFSVTLEWLPGYSGGPD-LKQN-YVIWYREQGNKD  290 (460)
Q Consensus       217 ~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~----~~~~~~~~~l~w~~~~~~~~~-~~~~-~~~~~~~~~~~~  290 (460)
                      .|.|.|+|.+.|..+.......+.|...++ +|....    ....+..+.|.|...  +.+. +... .+.|++++... 
T Consensus       141 ~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~-~p~~~~~~~~~~~~g~~~~l~C~~~--~~p~~p~~~~~~~w~~~~~~~-  216 (262)
T 3rjd_A          141 SHNGTYHCSGMGKHRYTSAGISVTVKELFP-APVLNASVTSPLLEGNLVTLSCETK--LLLQRPGLQLYFSFYMGSKTL-  216 (262)
T ss_dssp             GGCEEEEEEEESSSEEEEECEEEEEECSSC-CCEEEESSCSSEETTCCEEEEEECC--CCCC-----EEEEEEETTEEE-
T ss_pred             hhCEEEEEEEeCCCCccccceEEEeccCCC-CCeEeecCceeecCCCeEEEEeEcc--cCCCCCCccEEEEEEeCCcEe-
Confidence            999999999999998888888888875322 222111    123456789999853  3332 2222 24566553311 


Q ss_pred             eeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCC-CCCCcEEE
Q psy535          291 WLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG-MLSNIVVV  336 (460)
Q Consensus       291 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~-~~s~~~~~  336 (460)
                          . .......|.|.++...+.|.|.|.|.|..|.. ..|..+.+
T Consensus       217 ----~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l  258 (262)
T 3rjd_A          217 ----R-GRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELEL  258 (262)
T ss_dssp             ----E-EEESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEE
T ss_pred             ----c-ccCCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEE
Confidence                1 11245689999999999999999999999964 33444444

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.94  E-value=1.3e-26  Score=212.58  Aligned_cols=209  Identities=14%  Similarity=0.086  Sum_probs=150.6

Q ss_pred             CCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccc-
Q psy535           26 GSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTK-  104 (460)
Q Consensus        26 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~-  104 (460)
                      +.+|+|.|+|.|.|..|......+.|.|..+|.+  .+....+.+|+++.|.|.+.+.++++.|+|+|++..+...... 
T Consensus       199 ~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~  276 (423)
T 3qs7_E          199 HELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFE  276 (423)
T ss_dssp             CCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEE
T ss_pred             ecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceee
Confidence            5789999999999999876455577777766654  4556778899999999999984443479999999887532110 


Q ss_pred             ------cEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCC-cccccCCCCeEEEEeeee
Q psy535          105 ------DIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE-AMYQRKVGESVDMHCEAQ  177 (460)
Q Consensus       105 ------~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~  177 (460)
                            .......+.|.|.++..+|+|.|+|.|.|.     .+..+.|.|..+|.+...+. ....+..|+.+.|.|.+ 
T Consensus       277 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~-----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~-  350 (423)
T 3qs7_E          277 MSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH-----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRF-  350 (423)
T ss_dssp             EEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE-----EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEE-
T ss_pred             cccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC-----CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEE-
Confidence                  001223357999999999999999999886     45667777788887776653 22367889999999999 


Q ss_pred             ccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEecC
Q psy535          178 EAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT  244 (460)
Q Consensus       178 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~  244 (460)
                        .+.|.|.+.|++++..+..........-.+........|+|.|+|.|.|..|....++.|.|...
T Consensus       351 --~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~  415 (423)
T 3qs7_E          351 --KAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG  415 (423)
T ss_dssp             --EEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC----
T ss_pred             --EEcCCCeEEEEECCEECCCccccccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecC
Confidence              78999999999954433222100000112222556778999999999999999999999988753

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.94  E-value=1.2e-26  Score=216.64  Aligned_cols=311  Identities=14%  Similarity=0.145  Sum_probs=180.1

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCC---------C--cceeeeEEEEec----CCeeEEcceeee
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIG---------E--PQAAQAYLNVEF----PAKVTFTPTVQY   67 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~---------~--~~~~~~~l~v~~----~p~~~~~~~~~~   67 (460)
                      ..+|+.+..+     ++|.|.+++.+|+|.|+|.|.+..|         .  .....+.|.|..    +|.+...+....
T Consensus        64 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~  143 (457)
T 1hzh_H           64 FQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSK  143 (457)
T ss_dssp             TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSC
T ss_pred             ccCceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCcccc
Confidence            4679998764     2899999999999999999998765         1  123456788864    455544443445


Q ss_pred             ecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535           68 LPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQGS  140 (460)
Q Consensus        68 ~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~~~  140 (460)
                      +.+|+.++|.|.+.+. |.++.|+|++++..+........ ...+      ..|.|.++..+| |.|+|.|.|..+....
T Consensus       144 ~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~  221 (457)
T 1hzh_H          144 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV  221 (457)
T ss_dssp             CCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEE-ECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEE
T ss_pred             ccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCce-ECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcce
Confidence            6789999999999987 44358999999976432111111 1112      268999999999 9999999997665433


Q ss_pred             eeEEEEE---------------eeCCCce-eeCCCcccccCCCCeEEEEeeeeccCCCCCC----eeEEEcCCCccCCcc
Q psy535          141 SGQMEVL---------------VRKPPAF-TIKPEAMYQRKVGESVDMHCEAQEAEGTQKP----TITWQRRDGVALPKN  200 (460)
Q Consensus       141 ~~~~~v~---------------v~~~p~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~----~~~W~~~~~~~~~~~  200 (460)
                      ...+.+.               +..+|.+ ...|.....+..|+.++|.|.+   .|.+++    .+.|++++.......
T Consensus       222 ~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~---~g~~p~p~~~~i~W~k~~~~~~~~~  298 (457)
T 1hzh_H          222 DKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVV---VDVSHEDPEVKFNWYVDGVEVHNAK  298 (457)
T ss_dssp             EEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEE---ECCCTTCCCCEEEEEETTEEECCCE
T ss_pred             eEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEE---EcccCCCCceEEEEEeCCccccccc
Confidence            3222221               1124444 3333322126789999999999   566443    999999554332211


Q ss_pred             c---EEEecceEEEcc---cccee---ceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-----eeecceEEEEee
Q psy535          201 R---VKIVGGNITIEG---LRRVD---FGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-----VATEFSVTLEWL  266 (460)
Q Consensus       201 ~---~~~~~~~l~i~~---~~~~~---~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-----~~~~~~~~l~w~  266 (460)
                      .   ....++.+.+..   +...|   .|.|+|.|.|..+.......+.+......+|.....     ......+.|.|.
T Consensus       299 ~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~  378 (457)
T 1hzh_H          299 TKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCL  378 (457)
T ss_dssp             EEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSEEEEEEE
T ss_pred             cccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCcEEEEEE
Confidence            1   111234444432   33445   999999999875544333223221111222221111     112334888887


Q ss_pred             cCCCCCCCceeeEEEEEEecCCCCe-eeeec--cCCCC----ceEEEccCccCccEEEEEEEEcCCC
Q psy535          267 PGYSGGPDLKQNYVIWYREQGNKDW-LPIPV--TPPGS----TQITINRLTPATTYEFQVVGKNELG  326 (460)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~----~~~~i~~l~~~~~~~~~~~a~n~~G  326 (460)
                      ..  +.+++ ..-+.|++++..... .....  ...+.    ..+.+......+.|.|.|.|.|...
T Consensus       379 ~~--g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  442 (457)
T 1hzh_H          379 VK--GFYPS-DIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  442 (457)
T ss_dssp             EE--EEBSS-CCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EE--eEECC-CCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCC
Confidence            42  22222 113678876543211 11111  11111    1233333333568999999999753

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.94  E-value=1.6e-26  Score=205.29  Aligned_cols=269  Identities=14%  Similarity=0.167  Sum_probs=179.2

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEE-eecCeEEEeecCCCCCeEEEEEEEc
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV-MQNGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      .+|.|. .|....+.+|++++|.|.+.+.++.+.++|+|+|..+...  .++.. .....|.|.++..+|+|.|+|.+.|
T Consensus         6 ~~P~~~-~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   82 (317)
T 2y25_A            6 TGPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD--EKHDFKDGICTLLITEFSKKDAGIYEVILKD   82 (317)
T ss_dssp             SCCEEE-EEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCS--CC-----CCEEEEETTCCSTTCSCEEEEEES
T ss_pred             CCCcEe-eeeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCC--CcEEEECCeEEEEEccCCcccCeEEEEEEEC
Confidence            356666 4445788899999999999887444589999999988642  22222 2234799999999999999999999


Q ss_pred             CCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC----------CCCCeeEEEcCCCccCCcccEE
Q psy535          134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG----------TQKPTITWQRRDGVALPKNRVK  203 (460)
Q Consensus       134 ~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~----------~p~~~~~W~~~~~~~~~~~~~~  203 (460)
                      ..|..  ...+.|.+..+|.+...+... .+..|+.+.|.|.+   .+          .|.+.+.|++++.......+..
T Consensus        83 ~~g~~--~~~~~l~v~~~~~~~~~~~~~-~~~~g~~~~l~c~~---~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~  156 (317)
T 2y25_A           83 DRGKD--KSRLKLVDEAFKELMMEVCKK-IALSATDLKIQSTA---EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK  156 (317)
T ss_dssp             SSCEE--EEEECCSTHHHHHHHHHHHHH-HHTCBCCCEEEECS---SEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEE
T ss_pred             CCCcE--EEEEEEEEecCccccccCCce-ecccCCCeEEEeec---cccEEEEEeccCCCCcEEEEEECCEECCCCCCeE
Confidence            88764  334445444444333222222 45677777777776   44          6889999999665554445544


Q ss_pred             Eec----ceEEEccccceeceEEEEEEecccceeeeeeEEEEec----------------CCCCCCCce------eeeee
Q psy535          204 IVG----GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG----------------TQPHAPYNI------TGVAT  257 (460)
Q Consensus       204 ~~~----~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~----------------~~p~~p~~~------~~~~~  257 (460)
                      ...    ..|.|.++...|.|.|+|.+.|..|.......+.+..                .....|...      .....
T Consensus       157 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~  236 (317)
T 2y25_A          157 TGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE  236 (317)
T ss_dssp             EEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEET
T ss_pred             EeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEc
Confidence            432    2499999999999999999999999887777765431                011111111      12234


Q ss_pred             cceEEEEeecCCCCCCCceeeEEEEEEecCCC---CeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcE
Q psy535          258 EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK---DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV  334 (460)
Q Consensus       258 ~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~  334 (460)
                      +..+.|.|..  .+.+.+.   +.|++++...   ....+.........|.|.++...+.|.|+|.|.|..|....+..+
T Consensus       237 g~~~~l~C~~--~g~p~p~---i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l  311 (317)
T 2y25_A          237 GKALNLTCNV--WGDPPPE---VSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV  311 (317)
T ss_dssp             TSBBCEEEEE--ECSSCCE---EEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCEEEEEEEE--ecCCCCE---EEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEE
Confidence            5678888874  3445443   7788775421   111111111233589999999999999999999999976555555


Q ss_pred             EEE
Q psy535          335 VVK  337 (460)
Q Consensus       335 ~~~  337 (460)
                      .+.
T Consensus       312 ~V~  314 (317)
T 2y25_A          312 SVF  314 (317)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.94  E-value=1.3e-26  Score=207.80  Aligned_cols=228  Identities=22%  Similarity=0.355  Sum_probs=167.8

Q ss_pred             cceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeE--EcceeeeecceeeEEEEEE-----Ee
Q psy535            9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVT--FTPTVQYLPFRLQGVVQCH-----IK   81 (460)
Q Consensus         9 ~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~-----~~   81 (460)
                      ..|+.. .+++|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|..++...  .......+.+|+++.|.|.     +.
T Consensus        73 ~~~~~~-~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~  150 (339)
T 3o4o_C           73 ETRMWA-QDGALWLLPALQEDSGTYVCTTRNASYCD-KMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTR  150 (339)
T ss_dssp             SSCEEE-ETTEEEESSBCTTCCEEEECCEEETTEEE-EEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCC
T ss_pred             cccEEe-eCCeEEECCCCcccCEEEEEEEECCcceE-EEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCccccc
Confidence            456664 67899999999999999999999988754 677888888765431  2233346788999999999     67


Q ss_pred             cCCCCCeEEEeeCCeecCccccccEEEeec-CeEEEeecCCCCCeEEEEEEEcCCCCcc--eeeEEEEEeeC-----CCc
Q psy535           82 ANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GSLLFTRVNQNHQGRYTCTPYNAHGTQG--SSGQMEVLVRK-----PPA  153 (460)
Q Consensus        82 ~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~G~y~C~~~~~~g~~~--~~~~~~v~v~~-----~p~  153 (460)
                      +.|.+ .+.|++++..+... ..++....+ +.|.|.++..+|+|.|+|.|.|..|...  .+..+.|.|..     +|.
T Consensus       151 g~p~~-~v~W~k~g~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~  228 (339)
T 3o4o_C          151 DKTDV-KIQWYKDSLLLDKD-NEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPV  228 (339)
T ss_dssp             SSSCC-CBCCEESSCBCCTT-CSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCE
T ss_pred             CCCCc-eEEEecCCeeCCCC-CceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCE
Confidence            77665 79999999988643 234444433 4799999999999999999999877432  34555666653     455


Q ss_pred             eeeCCCcccccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCCccC---------CcccEEEe-cc------eEEEccccc
Q psy535          154 FTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDGVAL---------PKNRVKIV-GG------NITIEGLRR  216 (460)
Q Consensus       154 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~~~~---------~~~~~~~~-~~------~l~i~~~~~  216 (460)
                      +...+... .+..|+.+.|.|.+....+.| .+.+.|++++..+.         ...+.... .+      .|.|.++..
T Consensus       229 i~~~~~~~-~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~  307 (339)
T 3o4o_C          229 IISPLKTI-SASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTR  307 (339)
T ss_dssp             ECCCSCCC-CCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCC
T ss_pred             EecCCcee-EeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEech
Confidence            55544443 688999999999984335777 88999998543221         11111111 22      699999999


Q ss_pred             eec-eEEEEEEecccceeeeeeEEEE
Q psy535          217 VDF-GYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       217 ~~~-g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      .|. |.|+|.|.|..|.......+.+
T Consensus       308 ~d~~G~Y~C~a~N~~G~~~~~~~~~~  333 (339)
T 3o4o_C          308 EDLHMDFKCVVHNTLSFQTLRTTVKE  333 (339)
T ss_dssp             CSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred             hhcCccEEEEEEeccCceEEEEEhhH
Confidence            997 9999999999999887776544

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.94  E-value=3.2e-27  Score=219.01  Aligned_cols=311  Identities=12%  Similarity=0.100  Sum_probs=187.8

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec----CCeeEEcceeeeecceeeEEEEE
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQGVVQC   78 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C   78 (460)
                      .++|+.+..+     ++|.|.+++.+|+|.|+|.|.+..+.. ...+.|.|..    +|.+...+....+.+|+.++|.|
T Consensus        63 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C  141 (434)
T 1igy_B           63 FKDKATLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYW-GQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGC  141 (434)
T ss_dssp             GTTTEECCBCGGGCBBCEEECSBCGGGCSEECCCCSSSSCCC-CCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEE
T ss_pred             ccccEEEEEECCCCEEEEEECCCChHHCEEEEEEEEcccccc-CCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEE
Confidence            4679998764     389999999999999999999864332 4556777763    45444333233457899999999


Q ss_pred             EEecC-CCCCeEEEeeCCeecCccccccEE----EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE-----e
Q psy535           79 HIKAN-PTFQYVTWTKDKRLLEPYQTKDIV----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL-----V  148 (460)
Q Consensus        79 ~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~-----v  148 (460)
                      .+.+. |.+..|.|++++..+.........    ....+.|.|.++..+| |.|+|.|.|..+.......+.+.     |
T Consensus       142 ~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v  220 (434)
T 1igy_B          142 LVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKP  220 (434)
T ss_dssp             EEEEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCC
T ss_pred             EEeeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCcc
Confidence            99987 444489999998764211111100    0112458999999889 99999999988875444333221     0


Q ss_pred             -----eCCCceeeCCCcccc-cCCCCeEEEEeeeeccCCCC----CCeeEEEcCCCccCCcccE---E------EecceE
Q psy535          149 -----RKPPAFTIKPEAMYQ-RKVGESVDMHCEAQEAEGTQ----KPTITWQRRDGVALPKNRV---K------IVGGNI  209 (460)
Q Consensus       149 -----~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~~~~p----~~~~~W~~~~~~~~~~~~~---~------~~~~~l  209 (460)
                           ...|.+.+.+..... +..|+.++|.|.+   .+.+    .+.+.|++++.........   .      ...+.|
T Consensus       221 ~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~---~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L  297 (434)
T 1igy_B          221 CICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVV---VDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSAL  297 (434)
T ss_dssp             CCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEE---CCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCE
T ss_pred             ccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEE---eccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEE
Confidence                 000333333322212 7899999999999   5663    4589999966543221110   0      113468


Q ss_pred             EEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCcee-e----eeecceEEEEeecCCCCCCCceeeEEEEEE
Q psy535          210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNIT-G----VATEFSVTLEWLPGYSGGPDLKQNYVIWYR  284 (460)
Q Consensus       210 ~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~-~----~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~  284 (460)
                      .|.++...|.|.|+|.|.|..|.......+.+......+|.... .    ......++|.|...  +.+++ ..-+.|++
T Consensus       298 ~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~--g~~P~-~~~v~W~k  374 (434)
T 1igy_B          298 PIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMIT--DFFPE-DITVEWQS  374 (434)
T ss_dssp             ECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEE--EEBCS-CEEEEEEE
T ss_pred             EECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEE--eeECC-CeEEEEEE
Confidence            99999999999999999998886533222222111122222211 1    11344688998742  22221 12367888


Q ss_pred             ecCCCCee-eeeccCCCCc------eEEEccCccCccEEEEEEEEcCCC
Q psy535          285 EQGNKDWL-PIPVTPPGST------QITINRLTPATTYEFQVVGKNELG  326 (460)
Q Consensus       285 ~~~~~~~~-~~~~~~~~~~------~~~i~~l~~~~~~~~~~~a~n~~G  326 (460)
                      ++...... ..........      .+.|......+.|.|.|.|.|...
T Consensus       375 ~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  423 (434)
T 1igy_B          375 DGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  423 (434)
T ss_dssp             TTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTS
T ss_pred             CCEecCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCC
Confidence            76543211 1111111121      244444444568999999999864

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.94  E-value=1.9e-26  Score=206.44  Aligned_cols=263  Identities=18%  Similarity=0.260  Sum_probs=116.7

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      .+....+.+|++++|.|.+.+.++.+.++|+|+|..+..  ..++. ..++.|.|.+++.+|+|.|+|.+.|. |...  
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~--~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~--   87 (334)
T 1ry7_B           14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVP--SERVL-VGPQRLQVLNASHEDSGAYSCRQRLT-QRVL--   87 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCC--cccEE-eccceEEEeecccccCEEEEEEEEeC-CeEE--
Confidence            477788899999999999998754447999999998753  23332 34678999999999999999999988 5543  


Q ss_pred             eEEEEEeeCC----------------------CceeeCCC---cccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc
Q psy535          142 GQMEVLVRKP----------------------PAFTIKPE---AMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA  196 (460)
Q Consensus       142 ~~~~v~v~~~----------------------p~~~~~~~---~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~  196 (460)
                      ..+.|.|..+                      |.+.....   ....+..|+.+.|.|.+   .+.|.+.+.|++++...
T Consensus        88 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~---~g~p~~~v~W~~~~~~~  164 (334)
T 1ry7_B           88 CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPA---AGNPTPSISWLKNGREF  164 (334)
T ss_dssp             -------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCC---CCSSCCEEECCBTTBCC
T ss_pred             EEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEc---cCCCCCeEEEEECCEEC
Confidence            3444444433                      33321110   11256789999999998   78899999999955433


Q ss_pred             CCcccE---E--EecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCce------eeeeecceEEEEe
Q psy535          197 LPKNRV---K--IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNI------TGVATEFSVTLEW  265 (460)
Q Consensus       197 ~~~~~~---~--~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~------~~~~~~~~~~l~w  265 (460)
                      ....+.   .  .....|.|.++...|.|.|+|.+.|..|.......|.|...++.+|...      .....+..+.|.|
T Consensus       165 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C  244 (334)
T 1ry7_B          165 RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHC  244 (334)
T ss_dssp             CTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECC
T ss_pred             cccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEE
Confidence            322211   1  1234799999999999999999999999988888888876444333221      1223455788888


Q ss_pred             ecCCCCCCCceeeEEEEEEe----cCCCC---eeeeecc--------CCCCceEEEccCccCccEEEEEEEEcCCCCCCC
Q psy535          266 LPGYSGGPDLKQNYVIWYRE----QGNKD---WLPIPVT--------PPGSTQITINRLTPATTYEFQVVGKNELGDGML  330 (460)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~--------~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~  330 (460)
                      ..  .+.+.+   .+.|++.    +....   .......        ......|.|.++...+.|.|+|.|.|..|....
T Consensus       245 ~~--~g~p~p---~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  319 (334)
T 1ry7_B          245 KV--YSDAQP---HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHH  319 (334)
T ss_dssp             CC--BCSSCE---EEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEE
T ss_pred             EE--ecCCCC---eEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEE
Confidence            74  344443   3678873    22110   0000000        011237999999999999999999999998766


Q ss_pred             CCcEEEEc
Q psy535          331 SNIVVVKT  338 (460)
Q Consensus       331 s~~~~~~~  338 (460)
                      +..+.+..
T Consensus       320 ~~~l~V~~  327 (334)
T 1ry7_B          320 SAWLVVLP  327 (334)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEE
Confidence            66666653

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.94  E-value=6.4e-25  Score=192.25  Aligned_cols=251  Identities=15%  Similarity=0.187  Sum_probs=175.5

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      .+|.+...+....+.+|++++|.|.+.+     .+.|++++..+.      .....++.|.|.++..+|+|.|+|.+.| 
T Consensus        11 ~~P~i~~~~~~~~v~~G~~v~l~C~~~~-----~i~W~~~~~~~~------~~~~~~~~L~i~~~~~~d~G~Y~C~~~n-   78 (290)
T 2o26_X           11 SPPSIHPAQSELIVEAGDTLSLTCIDPD-----FVRWTFKTYFNE------MVENKKNEWIQEKAEATRTGTYTCSNSN-   78 (290)
T ss_dssp             -CCEESSCSSEEEEETTSCEEEEEECTT-----EEEEEEECSSSC------EEEECSSEEEETTCCGGGCEEEEEEESS-
T ss_pred             CCCEEeCCCCeEEEcCCCcEEEEECCCC-----cEEEecCCccee------eecCCCceEEEeccCHHhCeEEEEEeeC-
Confidence            4677777778888999999999999877     699999998761      1223347899999999999999999998 


Q ss_pred             CCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC-CeeEEEcCCCccCCc-ccEEEe-cceEEE
Q psy535          135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK-PTITWQRRDGVALPK-NRVKIV-GGNITI  211 (460)
Q Consensus       135 ~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~-~~~~W~~~~~~~~~~-~~~~~~-~~~l~i  211 (460)
                       |.   +..+.|.|..+|.+...+... .+..|+.+.|.|.+   .+ |. +.+.|++.++..+.. .++... ...|.|
T Consensus        79 -g~---~~~~~l~V~~~~~~~~~~~~~-~~~~g~~v~l~C~~---~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i  149 (290)
T 2o26_X           79 -GL---TSSIYVFVRDPAKLFLVGLPL-FGKEDSDALVRCPL---TD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITI  149 (290)
T ss_dssp             -SC---EEEEEEEEECSSCCBCCCCCE-EEETTSCEEECCCB---SC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEE
T ss_pred             -Cc---cEEEEEEEeCCCcccccccce-EEecCCeEEEeCcC---CC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEE
Confidence             43   556677777777766555444 67789999999998   54 77 899995435555543 333333 468999


Q ss_pred             ccccceece-EEEEEEecccceee-eeeEEEEecCCCCCCCcee-----eeeecceEEEEeecCCCCCCCceeeEEEEEE
Q psy535          212 EGLRRVDFG-YYECVVSNEVATIV-QAAQLVVEGTQPHAPYNIT-----GVATEFSVTLEWLPGYSGGPDLKQNYVIWYR  284 (460)
Q Consensus       212 ~~~~~~~~g-~y~C~a~n~~g~~~-~~~~l~v~~~~p~~p~~~~-----~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~  284 (460)
                      .++...|.| .|+|.|.|..+... ....+.|...+..+|....     ....+..+.|.|...  +.+.+  .-+.|++
T Consensus       150 ~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~--g~p~p--~~i~W~~  225 (290)
T 2o26_X          150 KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIK--DVSTS--VNSMWLK  225 (290)
T ss_dssp             ESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEE--ESSTT--CEEEEEE
T ss_pred             ecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEe--cCCcc--eeEEEec
Confidence            999999999 99999999866533 3466666532222332211     233456788999853  33333  1267777


Q ss_pred             ecCCC----Ceee---ee--ccCCCCceEEEccCccCccEEEEEEEEcCCCCCCC
Q psy535          285 EQGNK----DWLP---IP--VTPPGSTQITINRLTPATTYEFQVVGKNELGDGML  330 (460)
Q Consensus       285 ~~~~~----~~~~---~~--~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~  330 (460)
                      ++...    ....   ..  ........|.|.++...+.|.|.|.|.|..|....
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~  280 (290)
T 2o26_X          226 MNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANV  280 (290)
T ss_dssp             ESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEE
T ss_pred             CCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEE
Confidence            76541    1110   00  01113457999999999999999999999986533

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.94  E-value=1.1e-25  Score=200.58  Aligned_cols=257  Identities=17%  Similarity=0.189  Sum_probs=173.7

Q ss_pred             eeeeecceeeEEEEEEEecCC--------CCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCe-EEEEEEEcC
Q psy535           64 TVQYLPFRLQGVVQCHIKANP--------TFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQG-RYTCTPYNA  134 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~--------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~  134 (460)
                      ....+.+|+++.|.|.+.+.+        +.+.|+|+|++..+...  .+.  ..++.|.|.+++.+|+| .|+|.|.|.
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~--~~~--~~~~~L~i~~v~~~D~Gs~Y~C~a~n~  112 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPL--NRR--VKNGDLWIANYTSNDSHRRYLCTVTTK  112 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEEC--STT--EETTEEEESSCCGGGGGCCEEEEEECT
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCcccc--Cce--eecceEEEcCCChHhCCCcEEEEEEeC
Confidence            455688999999999998853        23479999999876531  222  45788999999999999 999999998


Q ss_pred             CCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCCccC-CcccEEEecceEEEc
Q psy535          135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDGVAL-PKNRVKIVGGNITIE  212 (460)
Q Consensus       135 ~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~~~~-~~~~~~~~~~~l~i~  212 (460)
                      .|..... .+.+.+..+|.+...+... .+..|+.+.|.|.+   .+.| .+.+.|++++.... ...++...+..|.|.
T Consensus       113 ~g~~~~~-~~~~v~~~~p~~~~~~~~~-~~~~G~~v~L~C~~---~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~  187 (329)
T 3oq3_B          113 NGDCVQG-IVRSHIRKPPSCIPETYEL-GTHDKYGIDLYCGI---LYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIH  187 (329)
T ss_dssp             TSCEEEE-EEEEEECCCCSCEEEEEET-TSSTTTCEEEECCC---CSCCCCCEEEEEETTEECCCSSSSEEEETTEEEEC
T ss_pred             CCceeeE-EEEEEEcCCCcEeccccce-EEeCCCcEEEEecc---CCCCCCceEEEEECCccCCCCCceEecCCCEEEEe
Confidence            8764333 2224455566644433333 56789999999998   7888 89999999554442 244555567899999


Q ss_pred             cccceeceEEEEEEecc--cceeeee----eEEEEecCCCC-----CCCceeeeeecceEEEEeecCCCCC-CCceeeEE
Q psy535          213 GLRRVDFGYYECVVSNE--VATIVQA----AQLVVEGTQPH-----APYNITGVATEFSVTLEWLPGYSGG-PDLKQNYV  280 (460)
Q Consensus       213 ~~~~~~~g~y~C~a~n~--~g~~~~~----~~l~v~~~~p~-----~p~~~~~~~~~~~~~l~w~~~~~~~-~~~~~~~~  280 (460)
                      ++...|+|.|+|.|.|.  .|.....    ..|.|...+..     .|.. .....+..+.|.|....... ++++  .+
T Consensus       188 ~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~-~~v~~G~~~~l~C~~~g~p~~~~~i--~v  264 (329)
T 3oq3_B          188 NPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPK-INVTIGEPANITCTAVSTSLLVDDV--LI  264 (329)
T ss_dssp             SCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSE-EEECTTSCEEEEEEEEETTCCTTCC--EE
T ss_pred             ecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCe-eEEecCCCEEEEEEEEECCCCCCCc--EE
Confidence            99999999999999987  5543333    56667643311     1111 12334567888888432221 1221  35


Q ss_pred             EEEEecCCC-Ceee---ee---ccCCCCceEEEccCccCccE-EEEEEEEcCCCCCCCCC
Q psy535          281 IWYREQGNK-DWLP---IP---VTPPGSTQITINRLTPATTY-EFQVVGKNELGDGMLSN  332 (460)
Q Consensus       281 ~~~~~~~~~-~~~~---~~---~~~~~~~~~~i~~l~~~~~~-~~~~~a~n~~G~~~~s~  332 (460)
                      .|++++... ....   ..   ........|.|.++...+.| .|.|.|.|..|....+.
T Consensus       265 ~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~  324 (329)
T 3oq3_B          265 DWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTT  324 (329)
T ss_dssp             EEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEE
T ss_pred             EEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEE
Confidence            777765431 1000   00   00013467999999999999 99999999998654443

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=99.93  E-value=6.3e-26  Score=218.95  Aligned_cols=342  Identities=16%  Similarity=0.217  Sum_probs=215.8

Q ss_pred             EcceeeeecceeeEEEEEEEe-------cCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535           61 FTPTVQYLPFRLQGVVQCHIK-------ANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~~~-------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      +.|.+..+..|++++|.|.+.       +.+.+ .|.|+++|..+.... .++.....+.|.|.++...|++ |+|.+..
T Consensus         8 i~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~-~i~W~~~~~~i~~~~-~~~~~~~~~~l~i~~~~~~~~~-y~C~~~~   84 (589)
T 3l5h_A            8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNAN-YIVWKTNHFTIPKEQ-YTIINRTASSVTFTDIASLNIQ-LTCNILT   84 (589)
T ss_dssp             CSCSCCCCCSSSCCCCCC-CCTTTTTTTTCCTT-TCCCBCSSSBSCGGG-CBCCSSSCCBCCCCCCCSSCCC-CCCC-CC
T ss_pred             EecCCCEEeCCCCEEEEEEEeCccCcccccccc-ceEEEeCCEECChHH-ccccCCcEeEEEEecCCCccee-eEEeccc
Confidence            356677788999999999997       43333 699999997775422 1211122347999999988765 7798763


Q ss_pred             CCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-------------cc
Q psy535          134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-------------KN  200 (460)
Q Consensus       134 ~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-------------~~  200 (460)
                      ..........+.|.+..||.              ....|.|..   .+.....+.|.........             ..
T Consensus        85 ~~~~~~~~~~~~l~v~~pP~--------------~P~nl~c~~---~~~~~~~~~W~~~~~~~~~~~y~l~~~~~~~~~~  147 (589)
T 3l5h_A           85 FGQLEQNVYGITIISGLPPE--------------KPKNLSCIV---NEGKKMRCEWDGGRETHLETNFTLKSEWATHKFA  147 (589)
T ss_dssp             TTCC-CCCCCCCCCC-CCCC--------------CCEEEEEEE---ETTSCEEEEEECCSCCSSCEEEEECCBCSSSBCC
T ss_pred             CCCcccEEEeEEEeccCCCC--------------CCEeeEEEE---CCCceEEEEECCCCcCCcCceEEEEEEEcCCCcc
Confidence            22111112223344444542              223444544   2223344445432111000             00


Q ss_pred             cEEEe---cceEEEc-cccceeceEEEEEEecccceeeee-eEEEEe-cCCCCCCCceee---eeecceEEEEeecCCCC
Q psy535          201 RVKIV---GGNITIE-GLRRVDFGYYECVVSNEVATIVQA-AQLVVE-GTQPHAPYNITG---VATEFSVTLEWLPGYSG  271 (460)
Q Consensus       201 ~~~~~---~~~l~i~-~~~~~~~g~y~C~a~n~~g~~~~~-~~l~v~-~~~p~~p~~~~~---~~~~~~~~l~w~~~~~~  271 (460)
                      .....   .....+. .+.....+.|+|.|.|..|..... ..+... ..+|.+|.++..   ......+.|+|.++...
T Consensus       148 ~c~~~~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~  227 (589)
T 3l5h_A          148 DCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIK  227 (589)
T ss_dssp             CEECBTTBSSCCBCCSCCCSSSCEEECEEEEESSCCBCCCCEEECGGGSEECCCCCSCEEECTTTCTTCEEEECCCCGGG
T ss_pred             cCCCCCCCcEEEEECCCCchheeEEEEEEEEeCCCCcccccEEEccccEEEcCCCceEEEEecCCCCCeEEEEeCCCCCC
Confidence            00000   1123333 455666788999999999875322 222211 125777777665   24667999999987654


Q ss_pred             CCCceeeEEEEEEecCCCCeeeeecc--CCCCceEEEccCccCccEEEEEEEEcCCCCCCC---CCcEEEEccCCCC-CC
Q psy535          272 GPDLKQNYVIWYREQGNKDWLPIPVT--PPGSTQITINRLTPATTYEFQVVGKNELGDGML---SNIVVVKTKGPKP-GP  345 (460)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~---s~~~~~~~~~~~P-~~  345 (460)
                      +.. +..|.+.|+..+...|......  ......+.+.+|.+++.|.|++.|.|..|.+.+   |..+.+.+.+.+| .+
T Consensus       228 ~~~-~~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~  306 (589)
T 3l5h_A          228 SVI-ILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKA  306 (589)
T ss_dssp             GTS-CEEEEEEEEETTCSCCBCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCSC
T ss_pred             Cee-eEEEEEEECCCCCCCcEEEccccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCCC
Confidence            444 4799999998887778765432  224578999999999999999999999987655   6677777777777 57


Q ss_pred             CcceEEE----eec-ceEEEEecCC--CCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeecc
Q psy535          346 PRNVSVT----EVN-NGFVISWQPP--LERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV  417 (460)
Q Consensus       346 p~~~~~~----~~~-~~v~l~W~~~--~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (460)
                      |..+...    ..+ +++.|.|+++  ...++.+.+|+|+|+..+. |..                              
T Consensus       307 p~~~~~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~~~~~------------------------------  356 (589)
T 3l5h_A          307 PSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQN------------------------------  356 (589)
T ss_dssp             CCEEEECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTSCCCB------------------------------
T ss_pred             CcEEEEeecCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCCCcee------------------------------
Confidence            7766644    223 5899999974  4557899999999976443 110                              


Q ss_pred             CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535          418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV  455 (460)
Q Consensus       418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~  455 (460)
                      .......+++  |.+++.|.|+|.|.|..|.|+++...
T Consensus       357 ~~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~~s~~~  392 (589)
T 3l5h_A          357 YTVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLT  392 (589)
T ss_dssp             CCCSSSCCEE--CCCSSCCCEEEEEEBTTBCCCCCCCC
T ss_pred             eccCCceEEE--EeCCCCEEEEEEEEeCCccCCCeEEE
Confidence            0122334444  88999999999999999999888643

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.93  E-value=1.2e-24  Score=192.79  Aligned_cols=269  Identities=18%  Similarity=0.192  Sum_probs=169.4

Q ss_pred             eEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEE
Q psy535           49 AYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT  128 (460)
Q Consensus        49 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~  128 (460)
                      +...+..+|.+...|. ..+.+|++++|.|.+.+.+  +.+.|+|+|..+....   ......+.|.|.+++.+|+|.|+
T Consensus        17 ~~~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~--~~~~W~k~g~~~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~   90 (316)
T 3vh8_G           17 SHMGGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHRF--NNFMLYKEDRIHIPIF---HGRIFQESFNMSPVTTAHAGNYT   90 (316)
T ss_dssp             -------CCEEEEESC-SEEETTSCEEEEEEBTTBC--CSEEEEESSCSSSCHH---HHCCBSSCEEECSCCGGGCEEEE
T ss_pred             cccCCCCCCEeeccCC-CccCCCCCEEEEEEccCCC--ceEEEEeCCCccceee---cCCcceEEEEECCCCcccCeEEE
Confidence            3444556788888887 5678999999999998873  3699999998764311   11124567999999999999999


Q ss_pred             EEEEcCCC---CcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccE
Q psy535          129 CTPYNAHG---TQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV  202 (460)
Q Consensus       129 C~~~~~~g---~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~  202 (460)
                      |.|.+..+   ....+..+.|.|..   +|.+...+..  .+..|+.++|.|.+   . .+.+.+.|++++.........
T Consensus        91 C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~--~v~~G~~v~L~C~~---~-~~~~~~~w~k~g~~~~~~~~~  164 (316)
T 3vh8_G           91 CRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGP--LVKSGERVILQCWS---D-IMFEHFFLHKEGISKDPSRLV  164 (316)
T ss_dssp             EEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCS--EEETTCCEEEEEEE---S-SCCSEEEEEETTCCSCCEEEE
T ss_pred             EEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCC--ccCCCCeEEEEEcC---C-CCCcEEEEEECCCccccceee
Confidence            99986432   22344556666643   4555555544  36789999999997   3 356789999955543322111


Q ss_pred             E-----EecceEEEccccceeceEEEEEEeccccee-----eeeeEEEEecCCCCCCCcee----eeeecceEEEEeecC
Q psy535          203 K-----IVGGNITIEGLRRVDFGYYECVVSNEVATI-----VQAAQLVVEGTQPHAPYNIT----GVATEFSVTLEWLPG  268 (460)
Q Consensus       203 ~-----~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~-----~~~~~l~v~~~~p~~p~~~~----~~~~~~~~~l~w~~~  268 (460)
                      .     .....|.|.++...|+|.|+|.|.|..|..     +....|.|... +.+|....    ....+..++|.|...
T Consensus       165 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~-~~~p~i~~~~~~~v~~G~~v~L~C~~~  243 (316)
T 3vh8_G          165 GQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGP-YEKPSLSAQPGPKVQAGESVTLSCSSR  243 (316)
T ss_dssp             CEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECS-SCCCEEEEESCSCCCTTSCCEEEEEES
T ss_pred             eeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCC-CCCCeEEeCCCCeecCCCcEEEEEECC
Confidence            1     134579999999999999999999987742     44456666542 22232211    123466889999853


Q ss_pred             CCCCCCceeeEEEEEEecCCCCeeeee---ccCCCCceEEEccCccCccEEEEEEEEcCCCC---CCCCCcEEEEc
Q psy535          269 YSGGPDLKQNYVIWYREQGNKDWLPIP---VTPPGSTQITINRLTPATTYEFQVVGKNELGD---GMLSNIVVVKT  338 (460)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~---~~~s~~~~~~~  338 (460)
                         .+.+   .+.|++++.........   ........|.|.++.  +.|.|+|.|.|..+.   +..|..+.+..
T Consensus       244 ---~~~~---~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  311 (316)
T 3vh8_G          244 ---SSYD---MYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSV  311 (316)
T ss_dssp             ---SCCS---EEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC--
T ss_pred             ---CCCc---EEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEE
Confidence               2322   26788876543322111   111122578999998  999999999998763   45666666544

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.93  E-value=6.4e-25  Score=182.04  Aligned_cols=191  Identities=23%  Similarity=0.299  Sum_probs=152.4

Q ss_pred             CCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccC---CCCceEEEccCccCccEEEEEE
Q psy535          244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP---PGSTQITINRLTPATTYEFQVV  320 (460)
Q Consensus       244 ~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~~~~~~~~~~  320 (460)
                      .+|.+|.++.......++.|+|.++...+..++.+|.+.++..+...|.......   .....+.+.+|.+++.|.|+|.
T Consensus         7 ~~P~~P~~~~~~~~~~s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   86 (209)
T 2vkw_A            7 DTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLA   86 (209)
T ss_dssp             CCCCCCEEEEEEECSSCEEEEEECCSCCCSSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTCEEEEEEE
T ss_pred             CCCcCCcccEeeeccCeEEEEEcCCCcCCCcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCCeEEEEEE
Confidence            4677788877655555799999988665665568999999988777776654321   1245899999999999999999


Q ss_pred             EEcCCCCCCCCCcEEEEccCC-CCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcc
Q psy535          321 GKNELGDGMLSNIVVVKTKGP-KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN  398 (460)
Q Consensus       321 a~n~~G~~~~s~~~~~~~~~~-~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~  398 (460)
                      |.|..|.+.++..+.+.+... +|.+|.++.+...+ +++.|+|++|.+.++++.+|.|+|+....              
T Consensus        87 A~n~~G~~~~s~~~~~~T~~~~~P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~--------------  152 (209)
T 2vkw_A           87 ALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSS--------------  152 (209)
T ss_dssp             EEETTEECCCCCCEEEECCCSCSCCCCEEEEEECTTSSCEEEEEECCCCTTSCCCEEEEEEEETTS--------------
T ss_pred             EEcCCcccCCcccccccccCCCCCCCCcccccccccCCeEEEEEECcccCCCCCceEEEEEECCCC--------------
Confidence            999999999999988887765 68899888877665 69999999997778899999999997221              


Q ss_pred             cccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                                  .|..........+.+.|.+|.|++.|.|+|+|.|..|.|++|+.+.++++
T Consensus       153 ------------~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~~~~~~~  202 (209)
T 2vkw_A          153 ------------EWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAA  202 (209)
T ss_dssp             ------------CCCCCEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECC-
T ss_pred             ------------CCceeeecCCCccEEEecCCCCCCEEEEEEEEEeCCccCCcchhhhhhhh
Confidence                        12222222346678999999999999999999999999999999887763

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.93  E-value=1.8e-25  Score=200.38  Aligned_cols=274  Identities=16%  Similarity=0.200  Sum_probs=180.8

Q ss_pred             ecCCeeEEcceeeeecceeeEEEEEEEe-------cCCCCCeEEEeeCCeec--CccccccEEEeecCeEEEeecCCCCC
Q psy535           54 EFPAKVTFTPTVQYLPFRLQGVVQCHIK-------ANPTFQYVTWTKDKRLL--EPYQTKDIVVMQNGSLLFTRVNQNHQ  124 (460)
Q Consensus        54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~-------~~~~~~~v~W~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~  124 (460)
                      ...|.+...|....+.+|+++.|.|.+.       +.|.+ .|.|++++..+  ......++ ...++.|.|.++..+|+
T Consensus        16 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~   93 (339)
T 3o4o_C           16 RSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRI-NLTWHKNDSARTVPGEEETRM-WAQDGALWLLPALQEDS   93 (339)
T ss_dssp             --CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCC-BCCCEESSCCSCCSCCSSSCE-EEETTEEEESSBCTTCC
T ss_pred             hhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCc-eEEEEECCCCcccCccccccE-EeeCCeEEECCCCcccC
Confidence            4567788888889999999999999997       66655 79999999874  22212333 35678999999999999


Q ss_pred             eEEEEEEEcCCCCcceeeEEEEEeeCCCcee--eCCCcccccCCCCeEEEEeeeec--cCCCCCCeeEEEcCCCccCCc-
Q psy535          125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFT--IKPEAMYQRKVGESVDMHCEAQE--AEGTQKPTITWQRRDGVALPK-  199 (460)
Q Consensus       125 G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~--~~~~~~~~~~~g~~~~l~C~~~~--~~~~p~~~~~W~~~~~~~~~~-  199 (460)
                      |.|+|.+.|..|..  ...+.|.|..++...  ...... .+..|+.+.|.|.+..  ..+.|.+.+.|++++..+... 
T Consensus        94 G~Y~C~~~n~~g~~--~~~~~l~V~~~~~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~  170 (339)
T 3o4o_C           94 GTYVCTTRNASYCD--KMSIELRVFENTDAFLPFISYPQ-ILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN  170 (339)
T ss_dssp             EEEECCEEETTEEE--EEEEEEEEECSCGGGHHHHCEEE-EEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTC
T ss_pred             EEEEEEEECCcceE--EEEEEEEEEcCCCccccccccce-EEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCC
Confidence            99999999987754  445556666555422  111112 5678999999999311  168889999999955433322 


Q ss_pred             ccEEEec--ceEEEccccceeceEEEEEEecccc----eeeeeeEEEEecCCCC-CCCcee-----eeeecceEEEEeec
Q psy535          200 NRVKIVG--GNITIEGLRRVDFGYYECVVSNEVA----TIVQAAQLVVEGTQPH-APYNIT-----GVATEFSVTLEWLP  267 (460)
Q Consensus       200 ~~~~~~~--~~l~i~~~~~~~~g~y~C~a~n~~g----~~~~~~~l~v~~~~p~-~p~~~~-----~~~~~~~~~l~w~~  267 (460)
                      .+.....  +.|.|.++...|.|.|+|.+.|..|    .......|.|...++. +|..+.     ....+..+.|.|..
T Consensus       171 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~  250 (339)
T 3o4o_C          171 EKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKV  250 (339)
T ss_dssp             SSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCE
T ss_pred             ceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEE
Confidence            3444443  4799999999999999999999887    4556677777643221 222111     12235567777764


Q ss_pred             CC-CCCCCceeeEEEEEEecCCCC-------eee---eeccCCCC----ceEEEccCccCcc-EEEEEEEEcCCCCCCCC
Q psy535          268 GY-SGGPDLKQNYVIWYREQGNKD-------WLP---IPVTPPGS----TQITINRLTPATT-YEFQVVGKNELGDGMLS  331 (460)
Q Consensus       268 ~~-~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~----~~~~i~~l~~~~~-~~~~~~a~n~~G~~~~s  331 (460)
                      .. .+.+.+  ..+.|++++....       ...   ......+.    ..|.|.++...+. |.|.|.|.|..|.....
T Consensus       251 ~~~~g~P~~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~  328 (339)
T 3o4o_C          251 FLGTGTPLT--TMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLR  328 (339)
T ss_dssp             EESSSCCSS--CEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCB
T ss_pred             ECCCCCCCC--ceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEE
Confidence            11 333412  2355665543211       000   01111111    1699999999997 99999999999976554


Q ss_pred             CcE
Q psy535          332 NIV  334 (460)
Q Consensus       332 ~~~  334 (460)
                      ..+
T Consensus       329 ~~~  331 (339)
T 3o4o_C          329 TTV  331 (339)
T ss_dssp             CCC
T ss_pred             EEh
Confidence            443

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.93  E-value=4.6e-25  Score=195.44  Aligned_cols=257  Identities=16%  Similarity=0.188  Sum_probs=168.1

Q ss_pred             ceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                      +....+.+|+.+.|.|.+....+.+.++|+|++..+..  ..++.....+   .|.|.++..+|+|.|+|.+.|..|.. 
T Consensus         8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~-   84 (312)
T 2y23_A            8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTED--SPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIA-   84 (312)
T ss_dssp             CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTT--CTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCC-
T ss_pred             ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCC--CCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcE-
Confidence            33456778999999998864333458999999999874  3445444433   79999999999999999999988754 


Q ss_pred             eeeEEEEEeeC------------CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecc
Q psy535          140 SSGQMEVLVRK------------PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGG  207 (460)
Q Consensus       140 ~~~~~~v~v~~------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~  207 (460)
                      .+  ..+.+..            +|.+...+.....+..|+.+.|.|.+.  .+.|.+.+.|++++.......++.+...
T Consensus        85 ~s--~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~--~~~p~~~v~W~~~~~~i~~~~~~~~~~~  160 (312)
T 2y23_A           85 SS--YLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAE--KLSGNAKVNYIFNEKEIFEGPKYKMHID  160 (312)
T ss_dssp             EE--EEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEES--CCCSSCEEEEEETTEEECSSSSCEEEEE
T ss_pred             EE--EEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEE--eCCCCCEEEEEECCEECeeCCcEEEEEc
Confidence            23  3444432            555554443233688999999999992  3889999999996655444444443321


Q ss_pred             ------eEEEccccceeceEEEEEEecccceeeeeeEEEEec---------------CCCCCCCce----eeeeecceEE
Q psy535          208 ------NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG---------------TQPHAPYNI----TGVATEFSVT  262 (460)
Q Consensus       208 ------~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~---------------~~p~~p~~~----~~~~~~~~~~  262 (460)
                            .|.|.++...|.|.|+|.+.|..+.......+....               ....+|...    .....+..+.
T Consensus       161 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~  240 (312)
T 2y23_A          161 RNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL  240 (312)
T ss_dssp             TTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEE
T ss_pred             cCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEE
Confidence                  399999999999999999987655443333221000               000112111    1233456788


Q ss_pred             EEeecCCCCCCCceeeEEEEEEecCCCCee-eeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCC
Q psy535          263 LEWLPGYSGGPDLKQNYVIWYREQGNKDWL-PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS  331 (460)
Q Consensus       263 l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s  331 (460)
                      |.|..  .+.+++  .-+.|++++...... ..... .+...|.|.++...+.|.|.|.|.|..|....+
T Consensus       241 l~C~~--~~~p~~--~~v~W~~~g~~~~~~~~~~~~-~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~  305 (312)
T 2y23_A          241 LKCKV--ANIKKE--THIVWYKDEREISVDEKHDFK-DGICTLLITEFSKKDAGIYEVILKDDRGKDKSR  305 (312)
T ss_dssp             EEEEE--ESCCSS--CEEEEEETTEEEEEECCC-----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEE
T ss_pred             EEEEE--cCCCCC--CEEEEeeCCEECCCCCcEEEE-CCEEEEEECcCCHHHCEEEEEEEEcCCCceeee
Confidence            88884  334443  126777754321100 11111 234689999999999999999999999965443

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.93  E-value=2.8e-25  Score=198.03  Aligned_cols=212  Identities=14%  Similarity=0.197  Sum_probs=139.5

Q ss_pred             CCeEEEeecCCCCCeeEEEEEEeCCCCc----ceeeeEEEEecCCee-EEcceeeeecceeeEEEEEEEecCCCCC-eEE
Q psy535           17 DGTLVINPVGSDDSGLYMCEVSNGIGEP----QAAQAYLNVEFPAKV-TFTPTVQYLPFRLQGVVQCHIKANPTFQ-YVT   90 (460)
Q Consensus        17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~   90 (460)
                      +++|.|.+++.+|+|.|+|.|.|..+..    ....+.|.|..+|.. .+.+....+.+|+.+.|.|.+.+.|+++ .++
T Consensus        73 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~  152 (327)
T 2wng_A           73 DFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLK  152 (327)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEE
T ss_pred             eeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEE
Confidence            3489999999999999999999986542    124568888765542 2222235678899999999999887653 899


Q ss_pred             EeeCCeecCccccccE------EEeecCeEEEeecCCCCCeEEEEEEEcCCCCc-ce--eeEEEEEeeCCCceeeCCCcc
Q psy535           91 WTKDKRLLEPYQTKDI------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ-GS--SGQMEVLVRKPPAFTIKPEAM  161 (460)
Q Consensus        91 W~~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~-~~--~~~~~v~v~~~p~~~~~~~~~  161 (460)
                      |+++|..+........      .....+.|.|.....+|+|.|+|.|.|..+.. ..  +..+.+.+..+|.+...+.. 
T Consensus       153 W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~-  231 (327)
T 2wng_A          153 WFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP-  231 (327)
T ss_dssp             EEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC-
T ss_pred             EEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC-
Confidence            9999998864221000      00111247777777777899999999987653 22  33333345678877765543 


Q ss_pred             cccCCCCeEEEEeeeeccCCC-CCC-eeEEEcCCCccCCc--ccEEE-ec------ceEEEccccceeceEEEEEEeccc
Q psy535          162 YQRKVGESVDMHCEAQEAEGT-QKP-TITWQRRDGVALPK--NRVKI-VG------GNITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       162 ~~~~~g~~~~l~C~~~~~~~~-p~~-~~~W~~~~~~~~~~--~~~~~-~~------~~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                        +..|+.++|.|.+   .+. |.+ .+.|++++..+...  ..... .+      ..|.|..+...|.|.|+|.|.|..
T Consensus       232 --~~~G~~v~l~C~~---~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~  306 (327)
T 2wng_A          232 --VRAENQVNVTCQV---RKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDG  306 (327)
T ss_dssp             --CSSTTCCEEEEEE---EEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETT
T ss_pred             --cCCCCcEEEEEEE---ccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCC
Confidence              6789999999999   564 444 89999954332211  11111 11      247788888899999999999998


Q ss_pred             ceee
Q psy535          231 ATIV  234 (460)
Q Consensus       231 g~~~  234 (460)
                      |...
T Consensus       307 ~~~~  310 (327)
T 2wng_A          307 QPAV  310 (327)
T ss_dssp             CCCE
T ss_pred             CCCc
Confidence            8643

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.93  E-value=2.9e-24  Score=185.15  Aligned_cols=201  Identities=18%  Similarity=0.267  Sum_probs=149.8

Q ss_pred             eEEEeeCC--------eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEec
Q psy535           11 RVVIKKDG--------TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA   82 (460)
Q Consensus        11 r~~~~~~~--------~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~   82 (460)
                      .+++..+|        +|.|.+++.+|+|.|+|.+.+..+   +..+.|.|..++. ...+....+.+|+.+.|.|.+..
T Consensus        33 ~~~W~~~g~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~---s~~~~l~v~~~~~-~~~~~~~~~~~g~~v~l~C~~~~  108 (262)
T 3rjd_A           33 STQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGR---SDPIQLEIHRGWL-LLQVSSRVFTEGEPLALRCHAWK  108 (262)
T ss_dssp             CEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEESSSCC---CCCEEEEEECSSE-EEEESCSEEETTSCEEEEEEEGG
T ss_pred             eEEEEECCEEeeccCCeEEEecCCcccCeEEEEEEecCCc---cccEEEEEeccce-EecCCCeEEecCCeEEEEEEccC
Confidence            55555553        799999999999999999988654   4567888876654 34555667788999999999944


Q ss_pred             CCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC---CCceeeCCC
Q psy535           83 NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK---PPAFTIKPE  159 (460)
Q Consensus        83 ~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~---~p~~~~~~~  159 (460)
                      ..+.+.+.|++++..+..       ...++.|.|.++..+|+|.|+|.+.|..+..  +..+.|.|..   +|.+...+ 
T Consensus       109 ~~p~~~v~W~~~g~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~--~~~~~l~V~~~~~~p~~~~~~-  178 (262)
T 3rjd_A          109 DKLVYNVLYYRNGKAFKF-------FHWNSNLTILKTNISHNGTYHCSGMGKHRYT--SAGISVTVKELFPAPVLNASV-  178 (262)
T ss_dssp             GCCCEEEEEEETTEEEEE-------EEECCCEEESSCCGGGCEEEEEEEESSSEEE--EECEEEEEECSSCCCEEEESS-
T ss_pred             CCCCceEEEEECCccccc-------cCCCCeEEEEECChhhCEEEEEEEeCCCCcc--ccceEEEeccCCCCCeEeecC-
Confidence            444458999999988742       1235679999999999999999999987554  4444555553   45555555 


Q ss_pred             cccccCCCCeEEEEeeeeccCCCCC-C----eeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEeccccee
Q psy535          160 AMYQRKVGESVDMHCEAQEAEGTQK-P----TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       160 ~~~~~~~g~~~~l~C~~~~~~~~p~-~----~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      .. .+..|+.+.|.|.+   .+.|. +    .+.|++++. .+..   ......|.|.++...|.|.|+|.|.|..|..
T Consensus       179 ~~-~~~~g~~~~l~C~~---~~~p~~p~~~~~~~w~~~~~-~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          179 TS-PLLEGNLVTLSCET---KLLLQRPGLQLYFSFYMGSK-TLRG---RNTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             CS-SEETTCCEEEEEEC---CCCCC-----EEEEEEETTE-EEEE---EESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             ce-eecCCCeEEEEeEc---ccCCCCCCccEEEEEEeCCc-Eecc---cCCCceEEEEEechhhCeEEEEEEEcccCce
Confidence            22 57889999999999   67665 4    367888443 3321   1234579999999999999999999999964

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.93  E-value=6.6e-25  Score=201.39  Aligned_cols=279  Identities=15%  Similarity=0.200  Sum_probs=191.9

Q ss_pred             EEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEE
Q psy535          143 QMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYY  222 (460)
Q Consensus       143 ~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y  222 (460)
                      ..++.++.+..+.+.|... .+..|++++|.|.+   .   .+.+.|++++ ..+...++......|.|.++...|.|.|
T Consensus       195 ~~~~~~~~~t~i~v~P~~~-~v~~Gs~vtl~C~a---~---~~~I~W~~ng-~~i~~~ri~~~~~~L~I~nl~~sd~g~y  266 (488)
T 2q7n_A          195 LKNISWIRNTETNVFPQDK-VVLAGSNMTICCMS---P---TKVLSGQIGN-TLRPLIHLYGQTVAIHILNIPVSENSGT  266 (488)
T ss_dssp             CEECCCCCCSSCCEECTTC-EEESSCCCEEEECC---S---SCEEEEEETT-EECCCEECSSSCEEEECCSCCCCCSSCE
T ss_pred             hhhcCCcCCCceEECCCCC-EEcCCCCEEEEEEC---C---CCEEEEEECC-EECchhhccceEEEEEEeCCCcccCCcE
Confidence            3344444566666777776 57899999999998   3   4699999954 4554433222334689999999888888


Q ss_pred             EEEEecccceeeeeeEEEEecCCCCCCCceeeee-ecceEEEEeecCCCCC--CCceeeEEEEEEecCCC-CeeeeeccC
Q psy535          223 ECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGG--PDLKQNYVIWYREQGNK-DWLPIPVTP  298 (460)
Q Consensus       223 ~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~~~-~~~~~~l~w~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~  298 (460)
                      .|.+.+. +. .....+.+. .+|.+|.++.+.. ....++++|.++...+  +.+...|.+.++..+.. .+.......
T Consensus       267 ~~~C~~~-~~-i~~~~l~v~-~pP~~P~nl~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~~~~~  343 (488)
T 2q7n_A          267 NIIFITD-DD-VYGTVVFAG-YPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLT  343 (488)
T ss_dssp             EEEEEES-SC-EEEEEEEEE-CCCCCCCSCEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECSSCCC
T ss_pred             EEEEEcC-Ce-EEEEEEEee-CCCCCCcccEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCccccccC
Confidence            8877632 22 234555554 5788888887644 6679999999877653  23447899988754322 222222111


Q ss_pred             CCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEE
Q psy535          299 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYL  376 (460)
Q Consensus       299 ~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~  376 (460)
                      .....+.+..+.....|.|+|.|.|..|.+ .+ .+.+.+.. .+|.||.++++...+ +++.|+|++|...++.+.+|+
T Consensus       344 ~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~-~S-~~~~~~~~~v~P~PP~nl~v~~~s~~sl~LsW~pP~~~~g~~l~Ye  421 (488)
T 2q7n_A          344 NETYRLGVQMHPGQEIHNFTLTGRNPLGQA-QS-AVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQ  421 (488)
T ss_dssp             SSCEEEEEECCSSCCCCEEEEEEEETTEEE-EE-EEECCGGGTBCCCCCEEEEEEECSTTCEEEEEEEEEECSSSEEEEE
T ss_pred             CceEEEEEcCCCCccEEEEEEEEEeCCCCc-cc-eEEEEecCCCCCCCCeEEEEEecCCCEEEEEEeCCCCCCCcceEEE
Confidence            234567776444468999999999999984 34 45554333 358999999998765 699999999976677899999


Q ss_pred             EEEEEcCCeeeeccccCCCCcccccccceecCceeeee-eccCCCCcceE--EECCCCcCceEEEEEEEeecCCC---CC
Q psy535          377 IKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP-IPVTPPGSTQI--TINRLTPATTYEFQVVGKNELGD---GM  450 (460)
Q Consensus       377 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~i~~L~p~~~Y~~~v~a~n~~G~---s~  450 (460)
                      |+|+..+.                         ..|.. +.........+  .|.+|.|++.|.|||+|.| .|.   |+
T Consensus       422 V~Yr~~~~-------------------------~~w~~~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~  475 (488)
T 2q7n_A          422 IEICKANS-------------------------KKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSR  475 (488)
T ss_dssp             EEEBCTTS-------------------------CCEEEEEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCC
T ss_pred             EEEEECCC-------------------------CCceEEEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCC
Confidence            99997543                         01110 00001112344  8999999999999999999 887   68


Q ss_pred             CCceeEeecC
Q psy535          451 LSNIVVVKTK  460 (460)
Q Consensus       451 ~s~~~~~~T~  460 (460)
                      +|+++.++|.
T Consensus       476 WS~~v~~~T~  485 (488)
T 2q7n_A          476 WSDEKRHLTT  485 (488)
T ss_dssp             CCCCCCBCCC
T ss_pred             CcCCEeEECC
Confidence            8888888874

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.92  E-value=1e-24  Score=190.98  Aligned_cols=262  Identities=13%  Similarity=0.119  Sum_probs=176.2

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      +|.+...+....+.+|++++|.|.+.+     .++|++++.......    .....+.|.|.++..+|+|.|+|.+.|..
T Consensus         4 ~p~i~~~~~~~~v~~G~~v~L~C~~~~-----~v~W~~~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   74 (289)
T 3ejj_X            4 APVIEPSGPELVVEPGETVTLRCVSNG-----SVEWDGPISPYWTLD----PESPGSTLTTRNATFKNTGTYRCTELEDP   74 (289)
T ss_dssp             CCEEESCSSEEEECTTCCEEEEEECSS-----CCEEECSCSSSSEEC----CCSSCCEEEESSCCGGGCEEEEEECCC--
T ss_pred             CcEecCCCceEEECCCCCEEEEEEeCC-----cEEEccCCCceEEEe----ccCCccEEEEeeeccccCEEEEEEEeccC
Confidence            455556667788899999999999876     399998775432100    11234579999999999999999999877


Q ss_pred             CCcceeeEEEEEeeCCCc-eeeCCCcccccCCCCeEEEEeeeeccCCCCCCe-eEEEcCCCccCC-cccEEEe-cceEEE
Q psy535          136 GTQGSSGQMEVLVRKPPA-FTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPT-ITWQRRDGVALP-KNRVKIV-GGNITI  211 (460)
Q Consensus       136 g~~~~~~~~~v~v~~~p~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~-~~W~~~~~~~~~-~~~~~~~-~~~l~i  211 (460)
                      +..  +..+.|.|..+|. +...+... .+..|+.+.|.|.+   .+.+.+. +.|++.++..+. ..+.... ++.|.|
T Consensus        75 ~~~--~~~~~l~V~~~~~~~~~~~~~~-~v~~g~~v~L~C~~---~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i  148 (289)
T 3ejj_X           75 MAG--STTIHLYVKDPAHSWNLLAQEV-TVVEGQEAVLPCLI---TDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFII  148 (289)
T ss_dssp             -----CEEEEEEECCSSCSEEESCSEE-EEETTSCEEECEEE---SCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEE
T ss_pred             Ccc--eeEEEEEEeCCCcceecccceE-EEecCCceEeEEEc---cCCCcceEEEEEecCCeecCCCccEEECCCCCEEE
Confidence            764  4566677777766 44555443 68899999999999   5666554 999865555543 3344433 568999


Q ss_pred             ccccceeceEEEEEEe-cccceeeeeeEEEEecCCCCCCCcee-----eeeecceEEEEeecCCCCCCCceeeEEEEEEe
Q psy535          212 EGLRRVDFGYYECVVS-NEVATIVQAAQLVVEGTQPHAPYNIT-----GVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE  285 (460)
Q Consensus       212 ~~~~~~~~g~y~C~a~-n~~g~~~~~~~l~v~~~~p~~p~~~~-----~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~  285 (460)
                      .++...|.|.|+|.+. +..+.......|.|...++.+|....     ....+..+.|.|.... ..+.+   .+.|+++
T Consensus       149 ~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~-~~p~~---~i~W~~~  224 (289)
T 3ejj_X          149 RKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATN-AEVGF---NVILKRG  224 (289)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEE-SSSCC---EEEEEET
T ss_pred             eecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCC-CCCce---EEEEEEC
Confidence            9999999999999999 55566667778888754444443322     1134668889887531 12333   3677776


Q ss_pred             cCCCCeeeee----ccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEE
Q psy535          286 QGNKDWLPIP----VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV  336 (460)
Q Consensus       286 ~~~~~~~~~~----~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~  336 (460)
                      +.........    ........|.|.++...+.|.|.|.|.|..|....+..+.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~  279 (289)
T 3ejj_X          225 DTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV  279 (289)
T ss_dssp             TEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEEC
T ss_pred             CEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEE
Confidence            5422111100    00012457999999999999999999999997655544443

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.92  E-value=3.5e-24  Score=189.86  Aligned_cols=216  Identities=15%  Similarity=0.245  Sum_probs=142.6

Q ss_pred             CCeEEEeecCCCCCeeEEEEEEeCCC----CcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeE
Q psy535           17 DGTLVINPVGSDDSGLYMCEVSNGIG----EPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYV   89 (460)
Q Consensus        17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v   89 (460)
                      ++.|.|.+++.+|+|.|+|.|.+..+    ...+..+.|.|..   +|.+...|... +.+|++++|.|.+.+. + +.+
T Consensus        73 ~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~~~-~-~~~  149 (316)
T 3vh8_G           73 QESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSDIM-F-EHF  149 (316)
T ss_dssp             SSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEESSC-C-SEE
T ss_pred             eEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCCCC-C-cEE
Confidence            45899999999999999999986432    2235567788754   35565555544 7889999999999543 3 379


Q ss_pred             EEeeCCeecCccccccEEE--eecCeEEEeecCCCCCeEEEEEEEcCCCCc---ceeeEEEEEee---CCCceeeCCCcc
Q psy535           90 TWTKDKRLLEPYQTKDIVV--MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ---GSSGQMEVLVR---KPPAFTIKPEAM  161 (460)
Q Consensus        90 ~W~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~---~~~~~~~v~v~---~~p~~~~~~~~~  161 (460)
                      .|+|++..+..........  ...+.|.|.++..+|+|.|+|.|.|..|..   ..+..+.|.|.   .+|.+...+.. 
T Consensus       150 ~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~-  228 (316)
T 3vh8_G          150 FLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGP-  228 (316)
T ss_dssp             EEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCS-
T ss_pred             EEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCC-
Confidence            9999998775321111111  134579999999999999999999987742   22445566664   34566655543 


Q ss_pred             cccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccE-EE----ecceEEEccccceeceEEEEEEecccce----
Q psy535          162 YQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV-KI----VGGNITIEGLRRVDFGYYECVVSNEVAT----  232 (460)
Q Consensus       162 ~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~-~~----~~~~l~i~~~~~~~~g~y~C~a~n~~g~----  232 (460)
                       .+..|+.++|.|.+   . .+.+.+.|++++......... ..    ....|.|.++.  |+|.|+|.+.|..+.    
T Consensus       229 -~v~~G~~v~L~C~~---~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s  301 (316)
T 3vh8_G          229 -KVQAGESVTLSCSS---R-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWS  301 (316)
T ss_dssp             -CCCTTSCCEEEEEE---S-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEEC
T ss_pred             -eecCCCcEEEEEEC---C-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhcc
Confidence             56889999999998   3 477899999955433221111 11    12468888888  999999999997653    


Q ss_pred             -eeeeeEEEEec
Q psy535          233 -IVQAAQLVVEG  243 (460)
Q Consensus       233 -~~~~~~l~v~~  243 (460)
                       .+..+.|.|.+
T Consensus       302 ~~S~~~~l~V~g  313 (316)
T 3vh8_G          302 DPSDPLLVSVTG  313 (316)
T ss_dssp             CCCCCEEC----
T ss_pred             CCCCcEEEEEeC
Confidence             33444555543

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.92  E-value=7.8e-24  Score=175.76  Aligned_cols=193  Identities=22%  Similarity=0.313  Sum_probs=149.0

Q ss_pred             CCCCCCCceee-eeecceEEEEeecCCCCC---CCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEE
Q psy535          244 TQPHAPYNITG-VATEFSVTLEWLPGYSGG---PDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV  319 (460)
Q Consensus       244 ~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~  319 (460)
                      .|+.+|.++.. .....++.|+|.++....   ...+.+|.+.|+..+...+..... ......+.|.+|.+++.|.|+|
T Consensus         3 ~P~~~P~~l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V   81 (211)
T 3p4l_A            3 LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA-NATTLSYLVTGLKPNTLYEFSV   81 (211)
T ss_dssp             CCCCCCEEEEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC---CCCEEE-EESSSEEEECSCCTTCEEEEEE
T ss_pred             CCCCCCCCEEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCcceEEEe-CCCceEEEecCcCCCCEEEEEE
Confidence            46778888775 455779999999864321   233479999998765443322222 2256789999999999999999


Q ss_pred             EEEcCCCCCCCCCcEEEEccCCCCC-CCcceEEEee---cceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCC
Q psy535          320 VGKNELGDGMLSNIVVVKTKGPKPG-PPRNVSVTEV---NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRP  395 (460)
Q Consensus       320 ~a~n~~G~~~~s~~~~~~~~~~~P~-~p~~~~~~~~---~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~  395 (460)
                      .|.|..|.+.+|..+.+.+....|. +|.++.+...   .+++.|+|++|...++.+.+|.|+|+..+...         
T Consensus        82 ~A~n~~g~~~~S~~~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~---------  152 (211)
T 3p4l_A           82 MVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAE---------  152 (211)
T ss_dssp             EEEETTEECCCCCCEEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECCTTCCSCCCEEEEEEESCTTSC---------
T ss_pred             EEEcCCCCCccceeEeeecccCCCCCCCcceEEEecCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCC---------
Confidence            9999999999999999999888786 9999999877   35999999999877889999999999754310         


Q ss_pred             CcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          396 EENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                                   ...|... ....+.+.+.|.+|.|++.|.|+|+|.|..|.|++|+++.++|+
T Consensus       153 -------------~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~~~  203 (211)
T 3p4l_A          153 -------------IHDWVIE-PVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTP  203 (211)
T ss_dssp             -------------GGGSEEE-EEESSCSEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEECC
T ss_pred             -------------CCceEEE-EecCCeeEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEccCc
Confidence                         0011111 11246789999999999999999999999999999999999874

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.92  E-value=4.3e-24  Score=189.10  Aligned_cols=264  Identities=19%  Similarity=0.153  Sum_probs=171.6

Q ss_pred             EcceeeeecceeeEEEEEEEecCCCCC----eEEEeeCCeecCc-----------cccccEEEe--------ecCeEEEe
Q psy535           61 FTPTVQYLPFRLQGVVQCHIKANPTFQ----YVTWTKDKRLLEP-----------YQTKDIVVM--------QNGSLLFT  117 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~~~~~~~~~----~v~W~~~~~~~~~-----------~~~~~~~~~--------~~~~l~i~  117 (460)
                      ..|....+..|++++|.|.+.+.+.+.    .|+|+|++.....           ....+....        .+.+|.|.
T Consensus         5 ~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~   84 (313)
T 4fqp_A            5 QAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMF   84 (313)
T ss_dssp             ECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEEC
T ss_pred             cCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEEC
Confidence            456667778899999999998865542    4899998754211           011222221        23569999


Q ss_pred             ecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC
Q psy535          118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL  197 (460)
Q Consensus       118 ~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~  197 (460)
                      +++.+|+|.|+|.+.+..+. ..+..+.|.+..+|.+...+... .+..++.+.+.|.+.  .+.|.+.+.|++++....
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~~-~~~~~~~l~v~~~P~~~~~~~~~-~~~~~~~~~~~C~~~--~~~P~~~i~W~~~~~~~~  160 (313)
T 4fqp_A           85 GLRVEDEGNYTCLFVTFPQG-SRSVDIWLRVLAKPQNTAEVQKV-QLTGEPVPMARCVST--GGRPPAQITWHSDLGGMP  160 (313)
T ss_dssp             SCCGGGCEEEEEEEECSSSC-EEEEEEEECCBBCCEEEEEECCB-CCCSSCEEEEEEEEE--EEBSCCEEEEEETTCCEE
T ss_pred             cCChhhCEEEEEEEeeccCc-ceeeeeeeeeccCCcceecccce-EeecCceEEEEEEcc--CccCCcEEEeecCCcccc
Confidence            99999999999998654332 24566677777788776665554 567788899999874  678999999999655432


Q ss_pred             CcccEEE-------ecceEEEccccceeceEEEEEEecccceeeeee--EEEEecCCCCC---CCceeeeeecceEEEEe
Q psy535          198 PKNRVKI-------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAA--QLVVEGTQPHA---PYNITGVATEFSVTLEW  265 (460)
Q Consensus       198 ~~~~~~~-------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~--~l~v~~~~p~~---p~~~~~~~~~~~~~l~w  265 (460)
                      .......       ....|.|......|.|.|+|.|.|..+......  .|.|.. +|..   +........+..++|.|
T Consensus       161 ~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~-~P~v~~~~~~~~~~~~g~~v~l~C  239 (313)
T 4fqp_A          161 NTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY-PPEVSISGYDNNWYLGQNEATLTC  239 (313)
T ss_dssp             EEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCE-EEEEEEECCCSCEETTCCCEEEEE
T ss_pred             ccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccccc-CCccccccccceeecCCCeEEEEE
Confidence            2211111       123588888889999999999999876544333  333322 1110   00111122345688888


Q ss_pred             ecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535          266 LPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK  337 (460)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~  337 (460)
                      ..  .+.|.+.  -+.|++++........ .   ....|.|.++...+.|.|+|.|.|..|....+..+.+.
T Consensus       240 ~~--~g~P~p~--~v~W~~~~~~l~~~~~-~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  303 (313)
T 4fqp_A          240 DA--RSNPEPT--GYNWSTTMGPLPPFAV-A---QGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVK  303 (313)
T ss_dssp             EE--EEESCCC--EEEEEETTBSCCTTEE-E---ETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             Ee--cCCCCCc--EEEEEECCEECCCceE-E---eCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            74  3444441  2568877653211111 1   24579999999999999999999999976555555554

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.92  E-value=1.8e-23  Score=173.89  Aligned_cols=182  Identities=24%  Similarity=0.385  Sum_probs=144.3

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe--ec--CeEEEeecCC-CCCeEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--QN--GSLLFTRVNQ-NHQGRYTC  129 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~~--~~l~i~~~~~-~d~G~y~C  129 (460)
                      .||.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+.. ...++...  .+  ..|.|.++.. +|+|.|+|
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~-~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C   82 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPP-SIVWRKNGKKVSG-TQSRYTVLEQPGGISILRIEPVRAGRDDAPYEC   82 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCC-EEEEEETTEECCT-TSTTEEEEEETTTEEEEEESSCCTTTTCSEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCC-eEEEEECCEECCC-CcceeEEEEcCCCeEEEEEEecCCCCcCceEEE
Confidence            47888889999999999999999999988776 8999999998863 22333332  23  3699999999 99999999


Q ss_pred             EEEcCCCCcceeeEEEEEeeCC-------CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-ccc
Q psy535          130 TPYNAHGTQGSSGQMEVLVRKP-------PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNR  201 (460)
Q Consensus       130 ~~~~~~g~~~~~~~~~v~v~~~-------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~  201 (460)
                      .+.|..|.. .+..+.|.|..+       |.+...+... .+..|+.++|.|.+   .+.|.+.+.|++++..... ..+
T Consensus        83 ~~~n~~g~~-~~~~~~l~V~~~~~~~~~~p~~~~~~~~~-~~~~g~~v~l~C~~---~g~p~p~i~W~~~~~~~~~~~~~  157 (212)
T 2yd1_A           83 VAENGVGDA-VSADATLTIYEGDKTPAGFPVITQGPGTR-VIEVGHTVLMTCKA---IGNPTPNIYWIKNQTKVDMSNPR  157 (212)
T ss_dssp             EEECSSSCE-EEEEEEEEEECTTCSCTTCCEEEECCCCE-EEETTCCEEECCEE---ECSSCCEEEEEETTEECCTTSTT
T ss_pred             EEEeCCCCe-EEeeEEEEEecccCCCCCCCeeEeCCCce-EeecCCeEEEEEEe---ccCCCCeEEEEECCeEcccCCCe
Confidence            999988772 344555555544       6666666554 67889999999999   7889999999995544332 345


Q ss_pred             EEEecceEEEccccceeceEEEEEEecccceeeee-eEEEEec
Q psy535          202 VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVVEG  243 (460)
Q Consensus       202 ~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~-~~l~v~~  243 (460)
                      ....++.|.|.++...|.|.|+|.|.|..|..... +.|.|..
T Consensus       158 ~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~  200 (212)
T 2yd1_A          158 YSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV  200 (212)
T ss_dssp             EEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence            66677899999999999999999999999998764 6888875

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.92  E-value=1.7e-23  Score=172.81  Aligned_cols=191  Identities=20%  Similarity=0.295  Sum_probs=148.8

Q ss_pred             CCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCC-CCeeeeec-cCCCCceEEEccCccCccEEEEEEE
Q psy535          244 TQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN-KDWLPIPV-TPPGSTQITINRLTPATTYEFQVVG  321 (460)
Q Consensus       244 ~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~i~~l~~~~~~~~~~~a  321 (460)
                      .+|.+|.++.......++.|+|.++.+++.. +.+|.+.++.... ..|..... .......+.+ +|.+++.|.|++.|
T Consensus         4 ~~P~~P~~~~~~~~~~sv~l~W~~p~~~~~~-i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~-~L~p~t~Y~~~V~A   81 (205)
T 1cfb_A            4 DVPNAPKLTGITCQADKAEIHWEQQGDNRSP-ILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV-QMSPWANYTFRVIA   81 (205)
T ss_dssp             CCCCCCEEEEEEECSSEEEEEEECCCCTTSC-CCEEEEEEEESSSTTCCEEEEEEEETTCSEEEE-ECCSSEEEEEEEEE
T ss_pred             cCCCCCCCcEEEecCCEEEEEEECcccCCCc-eEEEEEEEecCCCCCCceeeeeccCCCceEEEE-eCCCCCEEEEEEEE
Confidence            3677888777544788999999988655544 4799999987543 55643321 1224456777 99999999999999


Q ss_pred             EcCCCCCCCC-CcEEEEccCCCC-CCCcceEEEeec-ceEEEEecCCC--CCCccceEEEEEEEEcCCeeeeccccCCCC
Q psy535          322 KNELGDGMLS-NIVVVKTKGPKP-GPPRNVSVTEVN-NGFVISWQPPL--ERASLIQYYLIKYRTDGSWKTLNKGQIRPE  396 (460)
Q Consensus       322 ~n~~G~~~~s-~~~~~~~~~~~P-~~p~~~~~~~~~-~~v~l~W~~~~--~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~  396 (460)
                      .|..|.+.++ ..+.+++....| .+|.++.+...+ +++.|+|++|.  ..++.+.+|.|+|+..+.            
T Consensus        82 ~n~~G~~~~s~~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~------------  149 (205)
T 1cfb_A           82 FNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIP------------  149 (205)
T ss_dssp             EETTEECCCCCCCCCEEECCCCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESST------------
T ss_pred             EECCccCCCCCCceeEEcCCcCCCCCCeeeEeecCCCCeEEEEEECCCccccCCCceEEEEEEEECCC------------
Confidence            9999999888 567777777666 589999998877 69999999997  568899999999997653            


Q ss_pred             cccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCC-CceeEeecC
Q psy535          397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGML-SNIVVVKTK  460 (460)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~-s~~~~~~T~  460 (460)
                                  ...|..+.......+.+.|.+|.|++.|.|+|+|.|..|.|++ |..+.++|.
T Consensus       150 ------------~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~ss~~v~~~T~  202 (205)
T 1cfb_A          150 ------------AAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSG  202 (205)
T ss_dssp             ------------TCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEEEETTEECSSCCCCEEEESS
T ss_pred             ------------CCCcEEEEecCCCccEEEEcCCCCCcEEEEEEEEEcCCCcCCCCCCcEEEecC
Confidence                        1124433333446789999999999999999999999999995 788888873

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.92  E-value=5.4e-25  Score=194.52  Aligned_cols=261  Identities=15%  Similarity=0.171  Sum_probs=164.8

Q ss_pred             eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecC---------------ccccccEEEe----ecCeEEEeecCCCCCe
Q psy535           65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLE---------------PYQTKDIVVM----QNGSLLFTRVNQNHQG  125 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~---------------~~~~~~~~~~----~~~~l~i~~~~~~d~G  125 (460)
                      ...+.+|++++|.|.+.+.+++..|+|+|++....               .....++...    .+++|.|.+++.+|+|
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G   87 (308)
T 4fom_A            8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG   87 (308)
T ss_dssp             SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred             EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence            45677899999999987766655799998643211               1112233222    2357999999999999


Q ss_pred             EEEEEEEcCCCCcceeeEEEEEeeCCCcee--eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEE
Q psy535          126 RYTCTPYNAHGTQGSSGQMEVLVRKPPAFT--IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVK  203 (460)
Q Consensus       126 ~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~--~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~  203 (460)
                      .|+|.|.|..+.. .+..+.+.+..+|...  ..+... ....|+.+.|.|.+.  .+.|.+.+.|++++.. +......
T Consensus        88 ~Y~C~a~n~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~l~C~~~--~g~P~~~i~W~~~~~~-~~~~~~~  162 (308)
T 4fom_A           88 KYICKAVTFPLGN-AQSSTTVTVLVEPTVSLIKGPDSL-IDGGNETVAAICIAA--TGKPVAHIDWEGDLGE-MESTTTS  162 (308)
T ss_dssp             EEEEEEEETTTEE-EEEEEEEEEEBCCEEEEEECSSCC-CTTCSCEEEEEEEEE--EEBSCCEEEECCCSSB-CCEEEEE
T ss_pred             EEEEEEeeCCCcc-eeeeeEEEeeecccccccccccee-EEcCCceEEEEEEec--CCcCCceEEEEECCcc-cccccce
Confidence            9999998753322 3344445555454433  233333 456788999999864  6889999999995543 3222111


Q ss_pred             ------EecceEEEccccceeceEEEEEEecccceeeee--eEEEEecCCC--CCCCceeeeeecceEEEEeecCCCCCC
Q psy535          204 ------IVGGNITIEGLRRVDFGYYECVVSNEVATIVQA--AQLVVEGTQP--HAPYNITGVATEFSVTLEWLPGYSGGP  273 (460)
Q Consensus       204 ------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~--~~l~v~~~~p--~~p~~~~~~~~~~~~~l~w~~~~~~~~  273 (460)
                            ...+.|.|..+...|.|.|+|.|.|..+.....  +.|.|..+|.  ..+........+..++|.|.  ..+.+
T Consensus       163 ~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~--~~g~P  240 (308)
T 4fom_A          163 FPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCN--ADANP  240 (308)
T ss_dssp             CTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECC--EEEES
T ss_pred             eeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEE--EecCC
Confidence                  123468899999999999999999987765443  3333332111  11111112223456777776  34444


Q ss_pred             CceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535          274 DLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK  337 (460)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~  337 (460)
                      .+  ..+.|++++......   ....+...+.|.++...+.|.|+|.|.|.+|....+..+.+.
T Consensus       241 ~p--~~v~W~k~~~~~~~~---~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~  299 (308)
T 4fom_A          241 PP--FKSVWSRLDGQWPDG---LLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYIS  299 (308)
T ss_dssp             CE--EEEECCBSSSCCCSS---CBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEE
T ss_pred             CC--cEEEEEECCeECCCc---EEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            43  225677765532211   122245667788999999999999999999976555555554

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.92  E-value=1.7e-23  Score=189.33  Aligned_cols=274  Identities=14%  Similarity=0.144  Sum_probs=182.3

Q ss_pred             eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCc------------cccccEEEe------ecCeEEEeecCCCCCeE
Q psy535           65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP------------YQTKDIVVM------QNGSLLFTRVNQNHQGR  126 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~------------~~~~~~~~~------~~~~l~i~~~~~~d~G~  126 (460)
                      ...+.+|++++|.|.+.+.|.+ .+.|+|++..+..            ....++...      ....|.|.+++.+|+|.
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~   81 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   81 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSC-CEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEE
T ss_pred             eEEEeCCCeEEEEEEecCCCce-EEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEE
Confidence            3457789999999999876655 7999999854211            112333332      24579999999999999


Q ss_pred             EEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEec
Q psy535          127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG  206 (460)
Q Consensus       127 y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  206 (460)
                      |+|.+.|..+      .+.|.|..   +...|..  .+..|+.++|.|.+   .+.|.+.+.|+++++.      .....
T Consensus        82 Y~C~~~n~~~------~~~l~V~~---~~~~~~~--~v~~G~~v~l~C~~---~~~p~~~v~W~~~~~~------~~~~~  141 (363)
T 1wio_A           82 YICEVEDQKE------EVQLLVFG---LTANSDT--HLLQGQSLTLTLES---PPGSSPSVQCRSPRGK------NIQGG  141 (363)
T ss_dssp             EEEEETTEEE------EEEEEEEE---EEESSCS--SEESBSCEEEEEEC---CTTCCCCEEEECSSSC------EEEES
T ss_pred             EEEEEEECCC------cEEEEEEe---CCCCCce--EEecCCCEEEEEEc---CCCCCCeEEEEcCCCc------ccccc
Confidence            9999987532      34444443   2333432  56789999999998   6789999999986543      23356


Q ss_pred             ceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceeeeeecceEEEEeecCCCCCC-CceeeEEEEEEe
Q psy535          207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGP-DLKQNYVIWYRE  285 (460)
Q Consensus       207 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~-~~~~~~~~~~~~  285 (460)
                      ..|.|.++...|+|.|+|.|.|..+.....+.+.|.. +|..+. ......+..+.|.|........ .| ..-+.|+++
T Consensus       142 ~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~-~p~~~~-~~~~~~G~~v~l~C~~~~~~~~~~P-~p~i~W~~~  218 (363)
T 1wio_A          142 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA-FQKASS-IVYKKEGEQVEFSFPLAFTVEKLTG-SGELWWQAE  218 (363)
T ss_dssp             SEEEECSBCGGGCEECEEEEEETTEEEEECCEECEEC-CSCSEE-EEEEETBCCEEEECCCCCCCCSSCE-EEEEEEEES
T ss_pred             eEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEec-CCCCCC-ceEEecCCEEEEEEEEecccccCCC-ceeEEEecC
Confidence            7899999999999999999999877777777777764 333332 1223346678888864322111 12 234677776


Q ss_pred             cCCCCee---------eeec-----------cCCCCceEEEccCccCccEEEEEEEEcC--CCCCCCCCcEEEEccCCCC
Q psy535          286 QGNKDWL---------PIPV-----------TPPGSTQITINRLTPATTYEFQVVGKNE--LGDGMLSNIVVVKTKGPKP  343 (460)
Q Consensus       286 ~~~~~~~---------~~~~-----------~~~~~~~~~i~~l~~~~~~~~~~~a~n~--~G~~~~s~~~~~~~~~~~P  343 (460)
                      +......         ....           ...+...|.|.++...+.|.|.|.|.|.  .|....+..+.+..   .+
T Consensus       219 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~---v~  295 (363)
T 1wio_A          219 RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR---AT  295 (363)
T ss_dssp             SCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE---EC
T ss_pred             CCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE---ec
Confidence            5432110         0000           1122458999999999999999999999  88655555555542   24


Q ss_pred             CCCcceEEEeecc---eEEEEecCC
Q psy535          344 GPPRNVSVTEVNN---GFVISWQPP  365 (460)
Q Consensus       344 ~~p~~~~~~~~~~---~v~l~W~~~  365 (460)
                      +.+..+.+.....   .+.+.|...
T Consensus       296 g~~~~l~C~~~g~p~p~~~i~W~~~  320 (363)
T 1wio_A          296 QLQKNLTCEVWGPTSPKLMLSLKLE  320 (363)
T ss_dssp             CCSSSEEEEEESSCCTTCCEEEECS
T ss_pred             CCCeeEEEEEccccCCCccEEEEeC
Confidence            5556666554432   355777764

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.92  E-value=2.8e-24  Score=193.47  Aligned_cols=267  Identities=15%  Similarity=0.163  Sum_probs=155.4

Q ss_pred             ceeeeecceeeEEEEEEEecCCC----------CCeEEEeeCCeecC---cc---ccccEEEeecCeEEEeecCCCCCeE
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPT----------FQYVTWTKDKRLLE---PY---QTKDIVVMQNGSLLFTRVNQNHQGR  126 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~----------~~~v~W~~~~~~~~---~~---~~~~~~~~~~~~l~i~~~~~~d~G~  126 (460)
                      .....+.+|+++.|.|.+.+.|.          .+.++|+|++....   +.   .........++.|.|.++..+|+|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   93 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN   93 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence            34566889999999999987653          24899999884211   00   1122233457789999999999999


Q ss_pred             EEEEEEcCCCCcceeeEEEEEeeCCCceeeC----CCcccccCCCCeEEEEeeeecc--CCCCCCeeEEEcCCCccCCc-
Q psy535          127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIK----PEAMYQRKVGESVDMHCEAQEA--EGTQKPTITWQRRDGVALPK-  199 (460)
Q Consensus       127 y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~----~~~~~~~~~g~~~~l~C~~~~~--~~~p~~~~~W~~~~~~~~~~-  199 (460)
                      |+|.|.|..+....+  +.|.|..+|.+...    +... .+..|+.+.|.|.+...  .+.|.+.+.|++++ ..+.. 
T Consensus        94 Y~C~a~n~~~~~~~~--~~l~V~~~~~~~~~~~~~~~~~-~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~-~~l~~~  169 (349)
T 4dep_C           94 YTCMLRNTTYCSKVA--FPLEVVQKDSCFNSPMKLPVHK-LYIEYGIQRITCPNVDGYFPSSVKPTITWYMGC-YKIQNF  169 (349)
T ss_dssp             EEEEEECSSCEEEEE--EEEEEECCCTTSCCSCCCCEEE-EETTCSEEEEECCSCTTSSCTTSCCEEEEEETT-EECCSC
T ss_pred             EEEEEecCCceEEEE--EEEEEecCCcccCcccccCcce-eeecCccEEEEcCCCcccccCCCCceEEEeeCC-EECCCc
Confidence            999999987765444  44555544433221    2222 56789999999974211  56789999999954 44443 


Q ss_pred             ccEEEecceEEEccccceeceEEEEEEeccc-cee---eeeeEEEEecCCC--CCCCcee-------eeeecceEEEEee
Q psy535          200 NRVKIVGGNITIEGLRRVDFGYYECVVSNEV-ATI---VQAAQLVVEGTQP--HAPYNIT-------GVATEFSVTLEWL  266 (460)
Q Consensus       200 ~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~-g~~---~~~~~l~v~~~~p--~~p~~~~-------~~~~~~~~~l~w~  266 (460)
                      .++...+..|.|.++...|+|.|+|.|.|.. |..   ...+.+.+...+.  .+|....       ....+..++|.|.
T Consensus       170 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~  249 (349)
T 4dep_C          170 NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCT  249 (349)
T ss_dssp             SSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEE
T ss_pred             cceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEE
Confidence            4555556789999999999999999999987 543   5566666654210  0221111       1223456777777


Q ss_pred             cCCC--CCCCceeeEEEEEEecCCCCe--eeeec------cC-CC---CceEEEccCccCcc-EEEEEEEEcCCCCCCCC
Q psy535          267 PGYS--GGPDLKQNYVIWYREQGNKDW--LPIPV------TP-PG---STQITINRLTPATT-YEFQVVGKNELGDGMLS  331 (460)
Q Consensus       267 ~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~-~~---~~~~~i~~l~~~~~-~~~~~~a~n~~G~~~~s  331 (460)
                      ....  +.+.+.   +.|++++.....  .....      .. ..   ...|.|.++...+. |.|.|.|.|..|....+
T Consensus       250 ~~~~~~g~p~p~---v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~  326 (349)
T 4dep_C          250 VYFSFLMDSRNE---VWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKA  326 (349)
T ss_dssp             EEECCCTTCCCE---EEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEE
T ss_pred             EEEccCCCCCCE---EEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEE
Confidence            4322  234333   677776543211  00000      00 11   23488999999999 99999999999977666


Q ss_pred             CcEEE
Q psy535          332 NIVVV  336 (460)
Q Consensus       332 ~~~~~  336 (460)
                      ..+.+
T Consensus       327 ~~l~v  331 (349)
T 4dep_C          327 AKVKQ  331 (349)
T ss_dssp             CC---
T ss_pred             EEEee
Confidence            66655

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.92  E-value=8e-24  Score=172.73  Aligned_cols=183  Identities=19%  Similarity=0.331  Sum_probs=143.7

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      +|.|...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+......++....++.|.|.++..+|+|.|+|.+.+..
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   80 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAP-AVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEA   80 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCC-EEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCC-EEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcC
Confidence            4667777888889999999999999988765 799999998887656677777778899999999999999999999987


Q ss_pred             CCcceeeEEEEEeeCCCceeeCCCc-ccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe--cceEEEc
Q psy535          136 GTQGSSGQMEVLVRKPPAFTIKPEA-MYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIE  212 (460)
Q Consensus       136 g~~~~~~~~~v~v~~~p~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~--~~~l~i~  212 (460)
                      +.......+.+.+..+|.+...+.. ...+..|+.+.|.|.+   .+.|.+.+.|++++.......+....  +..|.|.
T Consensus        81 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~---~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~  157 (189)
T 2v5t_A           81 RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA---SGSPEPAISWFRNGKLIEENEKYILKGSNTELTVR  157 (189)
T ss_dssp             TTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEE---EEESCCEEEEEETTEECCCSSSEEEETTTTEEEEC
T ss_pred             CCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEE---ccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEc
Confidence            6655556677777778777655442 2357789999999999   67799999999955444334444433  4579999


Q ss_pred             cccceeceEEEEEEecccceeeeeeEEEEe
Q psy535          213 GLRRVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       213 ~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                      ++...|.|.|+|.|.|..|.......|.|.
T Consensus       158 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          158 NIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            999999999999999999998888877765

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.92  E-value=7.8e-24  Score=185.25  Aligned_cols=217  Identities=15%  Similarity=0.215  Sum_probs=145.3

Q ss_pred             ceEEEeeC----CeEEEeecCCCCCeeEEEEEEeCCCCcce--eeeEEEEecCCee--EEcce--eeeecceeeEEEEEE
Q psy535           10 TRVVIKKD----GTLVINPVGSDDSGLYMCEVSNGIGEPQA--AQAYLNVEFPAKV--TFTPT--VQYLPFRLQGVVQCH   79 (460)
Q Consensus        10 ~r~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~~l~v~~~p~~--~~~~~--~~~~~~g~~~~l~C~   79 (460)
                      .++....+    ++|.|.+++.+|+|.|+|.|.|..|....  ..+.|.|..+...  ...+.  ...+.+|+++.|.|.
T Consensus        39 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~  118 (289)
T 3mjg_X           39 QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCR  118 (289)
T ss_dssp             EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCC
T ss_pred             cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeE
Confidence            45555444    38999999999999999999998876323  3444444433222  11122  256888999999999


Q ss_pred             EecCCCCCeEEEeeCC--eecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC--CCcee
Q psy535           80 IKANPTFQYVTWTKDK--RLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK--PPAFT  155 (460)
Q Consensus        80 ~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~--~p~~~  155 (460)
                      +. .|.+ .++|++++  ..+...     . .....+.    ...|+|.|+|.|.|..+.. .+..+.|.+..  +|.+.
T Consensus       119 ~~-~p~~-~v~w~~~~~~~~~~~~-----~-~~~~~~~----~~~d~G~Y~C~a~n~~~~~-~s~~~~l~v~~~~~p~i~  185 (289)
T 3mjg_X          119 VT-DPQL-VVTLHEKKGDVALPVP-----Y-DHQRGFS----GIFEDRSYICKTTIGDREV-DSDAYYVYRLQVSSINVS  185 (289)
T ss_dssp             BS-CTTS-CEEEEESSCCSCCCCC-----E-ETTTEEE----ECCCSSEEEEEEEETTEEE-ECCCEEEEECCCCCCCCE
T ss_pred             cC-CCCc-eEEEEeCCCCCcccee-----e-cCCcCee----eeccCcEEEEEEEeCCcee-eeeeEEEEecCCCCCCcE
Confidence            98 4554 68888865  332210     0 0111121    3579999999999776554 23334555554  77777


Q ss_pred             eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc--cEE-------EecceEEEccccceeceEEEEEE
Q psy535          156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN--RVK-------IVGGNITIEGLRRVDFGYYECVV  226 (460)
Q Consensus       156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~--~~~-------~~~~~l~i~~~~~~~~g~y~C~a  226 (460)
                      ..+... .+..|+.+.|.|.+   .+.|.+.+.|++++...-...  ...       .....|.|.++...|.|.|+|.|
T Consensus       186 ~~~~~~-~v~~G~~v~L~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  261 (289)
T 3mjg_X          186 VNAVQT-VVRQGENITLMCIV---IGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNV  261 (289)
T ss_dssp             EEESCS-EEETTSCEEEEEEE---ESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEE
T ss_pred             EeCCcc-eeEcCCCEEEEEEE---CCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEe
Confidence            766654 68899999999999   689999999997443221111  111       12357999999999999999999


Q ss_pred             ecccceeeeeeEEEEec
Q psy535          227 SNEVATIVQAAQLVVEG  243 (460)
Q Consensus       227 ~n~~g~~~~~~~l~v~~  243 (460)
                      .|..|....+..|.+..
T Consensus       262 ~N~~G~~~~~~~l~v~~  278 (289)
T 3mjg_X          262 TESVNDHQDEKAINITV  278 (289)
T ss_dssp             EETTTTEEEEEEEEEEE
T ss_pred             ecCCCCceeEEEEEEEE
Confidence            99999999999888875

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.92  E-value=5.3e-24  Score=174.25  Aligned_cols=183  Identities=22%  Similarity=0.393  Sum_probs=143.0

Q ss_pred             ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec-CeEEEeecCCCCCeEEEEEEE
Q psy535           54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GSLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~G~y~C~~~  132 (460)
                      ..+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+... ..++....+ ..|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (192)
T 2iep_A            5 PKAPVITTPLETVDALVEEVATFMCAVESYPQP-EISWTRNKILIKLF-DTRYSIRENGQLLTILSVEDSDDGIYCCTAN   82 (192)
T ss_dssp             CEEEEESSCCCEEEEETTSCEEEECCEEEESCC-EEEEEETTEECCTT-CTTEEEEGGGTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCceeecCccceeeeCCCcEEEEeeCCCCCCC-eEEEEECCEEcccc-CccEEEcCCccEEEEcCCCcccCeEEEEEEE
Confidence            345667777777888999999999999988766 89999999988643 344444433 469999999999999999999


Q ss_pred             cCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-ecceEEE
Q psy535          133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-VGGNITI  211 (460)
Q Consensus       133 ~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i  211 (460)
                      |..|.. ......|.|..+|.+...+... .+..|+.+.|.|.+   .+.|.+.+.|++++.......+... .++.|.|
T Consensus        83 ~~~~~~-~~~~~~l~v~~~p~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i  157 (192)
T 2iep_A           83 NGVGGA-VESCGALQVKMKPKITRPPINV-KIIEGLKAVLPCTT---MGNPKPSVSWIKGDSALRENSRIAVLESGSLRI  157 (192)
T ss_dssp             CSSSCC-EEEEEEEEEEEEEEEEECCCCE-EEETTSCEEECCEE---EEESCCEEEEEETTEECCCCSSEEECTTSCEEE
T ss_pred             cCCCce-eEeEEEEEEEeCCccccCCcce-EEeCCCcEEEEEEE---eccCCceEEEEeCCEEccCCCcEEEecCCcEEE
Confidence            987764 3345566666788877776654 67899999999998   6888999999996554444444443 3568999


Q ss_pred             ccccceeceEEEEEEeccccee-eeeeEEEEec
Q psy535          212 EGLRRVDFGYYECVVSNEVATI-VQAAQLVVEG  243 (460)
Q Consensus       212 ~~~~~~~~g~y~C~a~n~~g~~-~~~~~l~v~~  243 (460)
                      .++...|.|.|+|.|.|..|.. +..+.|.|..
T Consensus       158 ~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  190 (192)
T 2iep_A          158 HNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV  190 (192)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEe
Confidence            9999999999999999999987 4456777764

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.91  E-value=7.7e-25  Score=192.04  Aligned_cols=264  Identities=11%  Similarity=0.060  Sum_probs=172.1

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      .+|.+...+....+.+|++++|.|.+.+.     +.|++++........    ....+.|.|.+++.+|+|.|+|.+.|.
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~-----v~W~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~n~   73 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNGS-----VEWDGPPSPHWTLYS----DGSSSILSTNNATFQNTGTYRCTEPGD   73 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSSC-----CCBCCCCCSSCEECC----BTTEEEEEESSCCGGGCSCEEECCCC-
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCCc-----eEEccCCCCceEEec----cCceEEEEEcccccccCEEEEEEEccC
Confidence            46778777888889999999999998773     899976543211000    001237999999999999999999987


Q ss_pred             CCCcceeeEEEEEeeCCCce-eeCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEEcCCCccCCc-ccEEEe-cceE
Q psy535          135 HGTQGSSGQMEVLVRKPPAF-TIKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQRRDGVALPK-NRVKIV-GGNI  209 (460)
Q Consensus       135 ~g~~~~~~~~~v~v~~~p~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~~~~~~-~~~~~~-~~~l  209 (460)
                      .+..  +..+.|.|..+|.. ...+... .+..|+.+.|.|.+   .+ |.  +.+.|+++++..+.. .+.... ...|
T Consensus        74 ~~~~--~~~~~l~V~~~~~~~~~~~~~~-~v~~g~~v~l~C~~---~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L  146 (292)
T 4dkd_C           74 PLGG--SAAIHLYVKDPARPWNVLAQEV-VVFEDQDALLPCLL---TD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGF  146 (292)
T ss_dssp             ---C--CEEECCEECCSSCCEEESCSEE-EEETTSCEECCEEE---SS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSCC
T ss_pred             CCCc--ceEEEEEEcCccccccccCCeE-EEcCCCcEEEeeeC---CC-CCcceeEEEEecCCCccccCCcccccCCceE
Confidence            7765  45566667777663 4444443 67899999999998   45 44  789999865555433 233332 4469


Q ss_pred             EEccccceeceEEEEEEecccceee-eeeEEEEecCCCCCCCceee-----eeecceEEEEeecCCCCCCCceeeEEEEE
Q psy535          210 TIEGLRRVDFGYYECVVSNEVATIV-QAAQLVVEGTQPHAPYNITG-----VATEFSVTLEWLPGYSGGPDLKQNYVIWY  283 (460)
Q Consensus       210 ~i~~~~~~~~g~y~C~a~n~~g~~~-~~~~l~v~~~~p~~p~~~~~-----~~~~~~~~l~w~~~~~~~~~~~~~~~~~~  283 (460)
                      .|.++...|.|.|+|.+.|..+... ....|.|....+.+|.....     ...+..+.|.|...  +.+++  ..+.|+
T Consensus       147 ~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~--~~~~~--~~~~w~  222 (292)
T 4dkd_C          147 TIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSAS--SVDVN--FDVFLQ  222 (292)
T ss_dssp             EETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEE--ESSSC--CEEECC
T ss_pred             EECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEec--CCCCc--eEEEEe
Confidence            9999999999999999998877553 36777777544434433221     13466788988853  22322  113344


Q ss_pred             EecCCCCee-eeeccC---CCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEc
Q psy535          284 REQGNKDWL-PIPVTP---PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  338 (460)
Q Consensus       284 ~~~~~~~~~-~~~~~~---~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~  338 (460)
                      +++...... ......   .....|.|.++...+.|.|+|.|.|..|....+..+.+..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  281 (292)
T 4dkd_C          223 HNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE  281 (292)
T ss_dssp             BSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             CCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence            443321110 011111   0224799999999999999999999999765555555443

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.91  E-value=1.6e-23  Score=171.77  Aligned_cols=182  Identities=20%  Similarity=0.341  Sum_probs=139.9

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEE-eecC--eEEEeecCCCCCeEEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV-MQNG--SLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~--~l~i~~~~~~d~G~y~C~~  131 (460)
                      .+|.+...|....+.+|++++|.|.+.+.|.+ .+.|++++..+......+... ..++  .|.|.+++.+|+|.|+|.+
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   82 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVP-EVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKA   82 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCC-EEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEE
Confidence            35677778888889999999999999988765 799999999886543222222 2333  7999999999999999999


Q ss_pred             EcCCCCcceeeEEEEEee-CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe--cc-
Q psy535          132 YNAHGTQGSSGQMEVLVR-KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GG-  207 (460)
Q Consensus       132 ~~~~g~~~~~~~~~v~v~-~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~--~~-  207 (460)
                      .|..|.......+.|... .+|.+...+... .+..|+.+.|.|.+   .+.|.+.+.|++++.......+....  +. 
T Consensus        83 ~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  158 (194)
T 2a38_A           83 TNGSGQATSTAELLVKAETAPPNFVQRLQSM-TVRQGSQVRLQVRV---TGIPTPVVKFYRDGAEIQSSLDFQISQEGDL  158 (194)
T ss_dssp             EETTEEEEEEEEEEEECCCEEEEEEECCCCE-EECTTEEEEEEEEE---EEESCCEEEEEETTEECCCSSSEEEEEETTE
T ss_pred             EcCCceEeEEEEEEEccCCCCCEEEeCCccE-EEcCCCEEEEEEEE---EEecCCeEEEEECCEECCCCCcEEEEEcCCE
Confidence            998877655544444322 466666666554 68899999999999   68899999999965544444444433  22 


Q ss_pred             -eEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          208 -NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       208 -~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                       .|.|.++...|.|.|+|.|.|..|.......|.|
T Consensus       159 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          159 YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence             6999999999999999999999999888887766

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.91  E-value=2.7e-23  Score=170.83  Aligned_cols=181  Identities=17%  Similarity=0.314  Sum_probs=138.6

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe--ecC--eEEEeecCCCCCeEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--QNG--SLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~~~--~l~i~~~~~~d~G~y~C~  130 (460)
                      .+|.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+.... .++...  .++  .|.|.++..+|+|.|+|.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKEIIADG-LKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCC-EEEEEETTEECCCCS-SSEEEEEETTTEEEEEECSCCGGGCSEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCC-EEEEEECCEECccCC-CcEEEEEcCCCEEEEEECcCCHHhCEEEEEE
Confidence            46788888888899999999999999988765 799999999886432 233322  233  799999999999999999


Q ss_pred             EEcCCCCcceeeEEEEEeeCCCceeeCCC----cccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe-
Q psy535          131 PYNAHGTQGSSGQMEVLVRKPPAFTIKPE----AMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-  205 (460)
Q Consensus       131 ~~~~~g~~~~~~~~~v~v~~~p~~~~~~~----~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~-  205 (460)
                      +.|..|..  +..+.|.|..+|.+...+.    ....+..|+.+.|.|.+   .+.|.+.+.|++++..+....++... 
T Consensus        81 ~~n~~g~~--~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~g~p~p~i~W~~~~~~~~~~~~~~~~~  155 (197)
T 2j8h_A           81 ATNQGGSV--SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF---SGKPDPVITWQKGQDLIDNNGHYQVIV  155 (197)
T ss_dssp             EEETTEEE--EEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEE---EEESCCEEEEEESSCEECSSSSCEEEE
T ss_pred             EEECCCce--eEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEE---EecCCCcEEEEECCEEeecCCCEEEEE
Confidence            99987775  4445555555554433221    12256789999999999   68899999999966544444444432 


Q ss_pred             ---cceEEEcc-ccceeceEEEEEEecccceeeeeeEEEEe
Q psy535          206 ---GGNITIEG-LRRVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       206 ---~~~l~i~~-~~~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                         ...|.|.+ +...|.|.|+|.|.|..|.....+.|.|.
T Consensus       156 ~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          156 TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             CSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence               34789999 99999999999999999998888888764

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.91  E-value=4.3e-23  Score=169.25  Aligned_cols=177  Identities=19%  Similarity=0.311  Sum_probs=139.7

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEe-cCCCCCeEEEeeCCeecCccccccEEE--ee--------cCeEEEeecCCCCC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIK-ANPTFQYVTWTKDKRLLEPYQTKDIVV--MQ--------NGSLLFTRVNQNHQ  124 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~--~~--------~~~l~i~~~~~~d~  124 (460)
                      +|.|...|....+.+|+++.|.|.+. +.|.+ .+.|++++..+......+...  ..        .+.|.|.++..+|+
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   80 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPP-EVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT   80 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCC-CCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCc-EEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence            67788889999999999999999999 87765 799999999987532222222  22        35799999999999


Q ss_pred             eEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCcccEE
Q psy535          125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPKNRVK  203 (460)
Q Consensus       125 G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~~~~~  203 (460)
                      |.|+|.+.+..+.. .+..+.|.|..+|.+...+... .+..|+.+.|.|.+   .+.|.| .+.|++++......... 
T Consensus        81 G~Y~C~~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~p~~v~W~~~~~~~~~~~~~-  154 (195)
T 2c5d_C           81 GQYQCLVFLGHQTF-VSQPGYVGLEGLPYFLEEPEDR-TVAANTPFNLSCQA---QGPPEPVDLLWLQDAVPLATAPGH-  154 (195)
T ss_dssp             EEEEEEEEETTEEE-ECCCEEEEECCSCEEEECCCCE-EECTTCCEEEEEEE---ECSSCCCEEEEEESSCBSSSSTTS-
T ss_pred             cEEEEEEEeCCCce-ecccEEEEEecCCeEEcCCCcE-EEcCCCEEEEEeEC---CCCCCCCEEEEEECCEeccCCCCc-
Confidence            99999999977653 3445777888899888877765 67889999999999   788999 99999965543332221 


Q ss_pred             EecceEEEccccceeceEEEEEEecccceee-eeeEEEE
Q psy535          204 IVGGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVV  241 (460)
Q Consensus       204 ~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~-~~~~l~v  241 (460)
                      .....|.|.++.  |+|.|+|.|.|..|... ..+.|.|
T Consensus       155 ~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          155 GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            345678999887  78999999999999885 6777777

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.91  E-value=3.4e-24  Score=190.04  Aligned_cols=265  Identities=16%  Similarity=0.188  Sum_probs=174.7

Q ss_pred             eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecC--ccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceee
Q psy535           65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLE--PYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG  142 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~  142 (460)
                      ...+.+|+++.|.|.+.+.++.+.++|+|++..+.  .....++.. .++.|.|.+++.+|+|.|+|.|.|..|......
T Consensus        14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~   92 (315)
T 1itb_B           14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ-HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKI   92 (315)
T ss_dssp             CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEE-CSSBEECTTCCGGGCSCCEECCCSSSCCCCEEC
T ss_pred             EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEec-cCCeEEECCCChhhCEEEEEEEeCCceEEEEEE
Confidence            45678899999999999987455899999986532  122334333 356899999999999999999999887665444


Q ss_pred             EEEEEeeCCCceeeCCCc--ccccCCCCeEEEEeeeec---cCCCCCCeeEEEcCCCccCC-cccEEEecceEEEccccc
Q psy535          143 QMEVLVRKPPAFTIKPEA--MYQRKVGESVDMHCEAQE---AEGTQKPTITWQRRDGVALP-KNRVKIVGGNITIEGLRR  216 (460)
Q Consensus       143 ~~~v~v~~~p~~~~~~~~--~~~~~~g~~~~l~C~~~~---~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~  216 (460)
                      .+.+. ..+|.+...+..  ...+..|+.+.|.|.+..   ..+.|.+.+.|++++..... ..+....++.|.|.++..
T Consensus        93 ~v~v~-~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~  171 (315)
T 1itb_B           93 SAKFV-ENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAE  171 (315)
T ss_dssp             CCEEE-CCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCG
T ss_pred             EEEEe-CCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEecee
Confidence            44332 244544333221  125678999999998610   15788899999995543322 344555677999999999


Q ss_pred             eeceEEEEEEe-ccccee---eeeeEEEEecC-CCCCCCce------eeeeecceEEEEeecCCCCCCCceeeEEEEEEe
Q psy535          217 VDFGYYECVVS-NEVATI---VQAAQLVVEGT-QPHAPYNI------TGVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE  285 (460)
Q Consensus       217 ~~~g~y~C~a~-n~~g~~---~~~~~l~v~~~-~p~~p~~~------~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~  285 (460)
                      .|.|.|+|.|. |..|..   ...+.+.+... .+.+|...      .....+..+.|.|..  .+.+.+.   +.|+++
T Consensus       172 ~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~--~g~P~p~---i~W~~~  246 (315)
T 1itb_B          172 KHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNV--TGQLSDI---AYWKWN  246 (315)
T ss_dssp             GGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEE--EECTTSE---EEEEET
T ss_pred             hhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEE--ecCCCCe---eEEEEC
Confidence            99999999999 787876   33344433321 12233221      123345678898884  3444443   677775


Q ss_pred             cCCCCe-------eeeeccC-------CCCceEEEccCccCc-cEEEEEEEEcCCCCCCCCCcEEE
Q psy535          286 QGNKDW-------LPIPVTP-------PGSTQITINRLTPAT-TYEFQVVGKNELGDGMLSNIVVV  336 (460)
Q Consensus       286 ~~~~~~-------~~~~~~~-------~~~~~~~i~~l~~~~-~~~~~~~a~n~~G~~~~s~~~~~  336 (460)
                      +.....       .......       .....|.|.++...+ .|.|+|.|.|..|....+..+.+
T Consensus       247 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v  312 (315)
T 1itb_B          247 GSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY  312 (315)
T ss_dssp             TEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEEC
T ss_pred             CEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEe
Confidence            432110       1111110       012379999999999 99999999999997655444443

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.91  E-value=6.2e-23  Score=179.52  Aligned_cols=254  Identities=13%  Similarity=0.120  Sum_probs=159.6

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee----cCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ----NGSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      ......+.+|++++|.|.+.+.     ++|++++..+.    .+.....    .+.|.|.++..+|+|.|+|.|.|..|.
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~-----v~W~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~   76 (289)
T 3mjg_X            6 PGPELVLNVSSTFVLTCSGSAP-----VVWERMSQEPP----QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGL   76 (289)
T ss_dssp             SCSEEECCTTCCEEEEEEESSC-----CEEEBTTBCCS----EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC----
T ss_pred             CCCeEEEeCCCcEEEEEeccce-----EEEECCCCCcc----cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCC
Confidence            4445678899999999998773     89999998873    1222222    247999999999999999999998765


Q ss_pred             -cceeeEEEEEeeCCCceeeCCCcc---cccCCCCeEEEEeeeeccCCCCCCeeEEEcCC-CccCCcccEEEecceEEEc
Q psy535          138 -QGSSGQMEVLVRKPPAFTIKPEAM---YQRKVGESVDMHCEAQEAEGTQKPTITWQRRD-GVALPKNRVKIVGGNITIE  212 (460)
Q Consensus       138 -~~~~~~~~v~v~~~p~~~~~~~~~---~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~-~~~~~~~~~~~~~~~l~i~  212 (460)
                       ...+..+.|.+..|..........   ..+..|+.+.|.|.+   . .|.+.+.|++.+ +..+. ..... ...+.  
T Consensus        77 ~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~---~-~p~~~v~w~~~~~~~~~~-~~~~~-~~~~~--  148 (289)
T 3mjg_X           77 ETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV---T-DPQLVVTLHEKKGDVALP-VPYDH-QRGFS--  148 (289)
T ss_dssp             --CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCB---S-CTTSCEEEEESSCCSCCC-CCEET-TTEEE--
T ss_pred             CcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEc---C-CCCceEEEEeCCCCCccc-eeecC-CcCee--
Confidence             334556667666443322222111   257889999999998   4 567788888754 32222 11111 11111  


Q ss_pred             cccceeceEEEEEEecccceeee-eeEEEEecCCCCCCCcee-----eeeecceEEEEeecCCCCCCCceeeEEEEEEec
Q psy535          213 GLRRVDFGYYECVVSNEVATIVQ-AAQLVVEGTQPHAPYNIT-----GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ  286 (460)
Q Consensus       213 ~~~~~~~g~y~C~a~n~~g~~~~-~~~l~v~~~~p~~p~~~~-----~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~  286 (460)
                        ...|.|.|+|.|.|..+.... ...+.+...  .+|....     ....+..+.|.|...  +.+.+.   +.|++++
T Consensus       149 --~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~--~~p~i~~~~~~~~v~~G~~v~L~C~~~--g~p~p~---v~W~~~~  219 (289)
T 3mjg_X          149 --GIFEDRSYICKTTIGDREVDSDAYYVYRLQV--SSINVSVNAVQTVVRQGENITLMCIVI--GNEVVN---FEWTYPR  219 (289)
T ss_dssp             --ECCCSSEEEEEEEETTEEEECCCEEEEECCC--CCCCCEEEESCSEEETTSCEEEEEEEE--SCSSBE---EEEECTT
T ss_pred             --eeccCcEEEEEEEeCCceeeeeeEEEEecCC--CCCCcEEeCCcceeEcCCCEEEEEEEC--CCCCcc---eEEEcCC
Confidence              356899999999987665433 344555432  2222111     233466889999853  344442   6777544


Q ss_pred             CCCCe---eeeecc----CCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCC
Q psy535          287 GNKDW---LPIPVT----PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGP  341 (460)
Q Consensus       287 ~~~~~---~~~~~~----~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~  341 (460)
                      .....   ......    ......|.|.++...+.|.|.|.|.|..|....+..+.+...+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  281 (289)
T 3mjg_X          220 KESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVES  281 (289)
T ss_dssp             SSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC-
T ss_pred             ccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEec
Confidence            32111   111111    11336899999999999999999999999887777787765543

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.91  E-value=6.1e-24  Score=196.22  Aligned_cols=216  Identities=22%  Similarity=0.289  Sum_probs=156.8

Q ss_pred             cceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCC--CCee
Q psy535          215 RRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN--KDWL  292 (460)
Q Consensus       215 ~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~  292 (460)
                      ...+.|.|.|.+.|.++.............+|.+|.++.......++.|+|.++...+..++..|.+.++..+.  ..|.
T Consensus       303 ~s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPsaP~nl~~~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~~~~~  382 (536)
T 3fl7_A          303 LPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECG  382 (536)
T ss_dssp             ECCCTTCSSCEECTTCBCCTTCCTTSCCBCCCCCBSCEEEECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-CCCEE
T ss_pred             CCCCCCccEEEEeccccccCCCccccccccCCCcccceEEEecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCCCccc
Confidence            34567899999999988765443332333478888888777778899999999887776556899999886321  1111


Q ss_pred             e------e--eccCCCCceEEEccCccCccEEEEEEEEcCCCC---CCCCCcEEEEccCCCCCCCcceEEEeec-ceEEE
Q psy535          293 P------I--PVTPPGSTQITINRLTPATTYEFQVVGKNELGD---GMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVI  360 (460)
Q Consensus       293 ~------~--~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~---~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l  360 (460)
                      .      .  .........+.|.+|.+++.|.|+|.|.|..|.   +..+..+.+.+.   |.+|..+.....+ +++.|
T Consensus       383 ~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~---~~~Ps~~~~~~~s~tSV~L  459 (536)
T 3fl7_A          383 PCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSIN---QTEPPKVRLEGRSTTSLSV  459 (536)
T ss_dssp             ECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEECC---SCCCCEEEEEECCC-CCEE
T ss_pred             ccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEeec---ccCCCCCceeeccCCeEEE
Confidence            0      0  111224678999999999999999999999987   334556666654   4455566655544 59999


Q ss_pred             EecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEE
Q psy535          361 SWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV  440 (460)
Q Consensus       361 ~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v  440 (460)
                      +|++|...+++|.+|+|+|+..+..                        ..+..+   ....++++|.+|.|++.|.|+|
T Consensus       460 sW~pP~~~ng~I~~Y~V~y~~~~~~------------------------~~~~~v---~~~~ts~~l~gL~P~T~Y~frV  512 (536)
T 3fl7_A          460 SWSIPPPQQSRVWKYEVTYRKKGDS------------------------NSYNVR---RTEGFSVTLDDLAPDTTYLVQV  512 (536)
T ss_dssp             EEECCTTTTTTCSEEEEEEEEC--C------------------------CCCEEE---EESSSEEECCSCCSSCEEEEEE
T ss_pred             EEECCcCCCCcccEEEEEEEECCCC------------------------ceEEEE---cCCCCEEEECCCCCCCEEEEEE
Confidence            9999987789999999999976531                        011111   2356889999999999999999


Q ss_pred             EEeecCCCCCCCceeEeecC
Q psy535          441 VGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       441 ~a~n~~G~s~~s~~~~~~T~  460 (460)
                      +|.|..|.|++|+++.++|.
T Consensus       513 rA~n~~G~Gp~S~~v~~~T~  532 (536)
T 3fl7_A          513 QALTQEGQGAGSKVHEFQTL  532 (536)
T ss_dssp             EEECC---CEECCCEEEECC
T ss_pred             EEEcCCcccCCCCCEEEEeC
Confidence            99999999999999999984

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.91  E-value=3.1e-23  Score=184.75  Aligned_cols=261  Identities=12%  Similarity=0.151  Sum_probs=152.8

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCc-------cccccEEE--------eecCeEEEeecCC
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEP-------YQTKDIVV--------MQNGSLLFTRVNQ  121 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~-------~~~~~~~~--------~~~~~l~i~~~~~  121 (460)
                      .+...|....+.+|+++.|.|.+.+. |.+ .|+|+|++.+...       ....++..        .....|.|.+++.
T Consensus         5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~-~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   83 (327)
T 2wng_A            5 QVIQPDKSVSVAAGESAILHCTVTSLIPVG-PIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP   83 (327)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCC-CEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred             EEEcCCCceEEecCCcEEEEEEccCcCCCc-eEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence            45566778889999999999999887 544 7999998764320       01123332        2344799999999


Q ss_pred             CCCeEEEEEEEcCCCCcc---eeeEEEEEeeCCCce--eeCCCcccccCCCCeEEEEeeeeccCCCCCC--eeEEEcCCC
Q psy535          122 NHQGRYTCTPYNAHGTQG---SSGQMEVLVRKPPAF--TIKPEAMYQRKVGESVDMHCEAQEAEGTQKP--TITWQRRDG  194 (460)
Q Consensus       122 ~d~G~y~C~~~~~~g~~~---~~~~~~v~v~~~p~~--~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~--~~~W~~~~~  194 (460)
                      +|+|.|+|.+.|..+...   .+..+.|.|..+|..  ...+.  ..+..|+.+.|.|.+   .+.|++  .+.|++++ 
T Consensus        84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~--~~~~~g~~~~l~C~~---~g~p~~~~~v~W~k~g-  157 (327)
T 2wng_A           84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPA--ARATPQHTVSFTCES---HGFSPRDITLKWFKNG-  157 (327)
T ss_dssp             GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCS--SCBCTTCEEEEEEEE---EEEBSSCCEEEEEETT-
T ss_pred             ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccc--cccCCCCEEEEEEEE---eCccCCCcEEEEEECC-
Confidence            999999999999765421   122345555544432  22332  257889999999999   566655  89999954 


Q ss_pred             ccCCcccEEE----------ecceEEEccccceeceEEEEEEeccccee-eeeeEEEEecCCCCCCCcee---eeeecce
Q psy535          195 VALPKNRVKI----------VGGNITIEGLRRVDFGYYECVVSNEVATI-VQAAQLVVEGTQPHAPYNIT---GVATEFS  260 (460)
Q Consensus       195 ~~~~~~~~~~----------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~~~l~v~~~~p~~p~~~~---~~~~~~~  260 (460)
                      ..+.......          ....|.|......+.|.|+|.|.|..+.. .......+......+|....   ....+..
T Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~G~~  237 (327)
T 2wng_A          158 NELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQ  237 (327)
T ss_dssp             EECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEECCSSTTC
T ss_pred             EEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCCcCCCCc
Confidence            4443222111          12246666666677899999999987753 11112222111122232211   1224567


Q ss_pred             EEEEeecCCCCCCCceeeEEEEEEecCCCCee---eeeccCCCC----ceEEEccCccCccEEEEEEEEcCCCCC
Q psy535          261 VTLEWLPGYSGGPDLKQNYVIWYREQGNKDWL---PIPVTPPGS----TQITINRLTPATTYEFQVVGKNELGDG  328 (460)
Q Consensus       261 ~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~i~~l~~~~~~~~~~~a~n~~G~~  328 (460)
                      ++|.|...  +.+++ ...+.|++++......   .......+.    ..|.|..+...+.|.|.|.|.|..|..
T Consensus       238 v~l~C~~~--g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~  309 (327)
T 2wng_A          238 VNVTCQVR--KFYPQ-RLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA  309 (327)
T ss_dssp             CEEEEEEE--EEBSS-CEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred             EEEEEEEc--cccCC-CcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence            88888743  22222 1136777765421110   011111111    347788888899999999999998753

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.91  E-value=1.2e-22  Score=165.69  Aligned_cols=176  Identities=20%  Similarity=0.372  Sum_probs=135.8

Q ss_pred             cCCeeEEcceeeeecc-eeeEEEEEEEecCCC-CCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEE
Q psy535           55 FPAKVTFTPTVQYLPF-RLQGVVQCHIKANPT-FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~-g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  132 (460)
                      .||.+...+. ..+.+ |+++.|.|.+.+.+. .+.+.|++++..+......    ..++.|.|.++..+|+|.|+|.+.
T Consensus         2 ~~P~i~~~~~-~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~   76 (190)
T 2wv3_A            2 NEPRIVTSEE-VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN----ASNMEYRINKPRAEDSGEYHCVYH   76 (190)
T ss_dssp             -CCEEEECCC-EECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBC----CSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCcccccce-EEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceE----eccEEEEEecCCcccCEEEEEEEE
Confidence            3667665444 44445 999999999998875 2479999999988642211    145679999999999999999999


Q ss_pred             cCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcC-CCccC----CcccEEEec-
Q psy535          133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR-DGVAL----PKNRVKIVG-  206 (460)
Q Consensus       133 ~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~-~~~~~----~~~~~~~~~-  206 (460)
                      |. +.  .+..+.|.|..+|.+...+... .+..|+.+.|.|.+   .+.|.+.+.|+++ ++..+    ...++.... 
T Consensus        77 n~-~~--~~~~~~l~V~~~p~~~~~~~~~-~~~~g~~v~l~C~~---~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~  149 (190)
T 2wv3_A           77 FV-SA--PKANATIEVKAAPDITGHKRSE-NKNEGQDAMMYCKS---VGYPHPEWMWRKKENGVFEEISNSSGRFFIINK  149 (190)
T ss_dssp             ET-TE--EEEEEEEEEECCCEEEEECSEE-EEETTSCEEEEEEE---ECSSCCEEEEEEEETTEEEECCCTTSCEEEEEC
T ss_pred             eC-Cc--ccccEEEEEecCCcccccCCcc-eeeCCCcEEEEEEe---CccCCCceEEEEcCCCceeeeecCCCeEEEecC
Confidence            87 54  4556777778899888777665 68899999999999   7899999999984 23222    233444432 


Q ss_pred             ---ceEEEcccc-ceeceEEEEEEecccceeeeeeEEEEe
Q psy535          207 ---GNITIEGLR-RVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       207 ---~~l~i~~~~-~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                         ..|.|.++. ..|.|.|+|.|.|..|.......|.|.
T Consensus       150 ~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             SSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence               269999999 799999999999999998888887764

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.91  E-value=4.2e-23  Score=177.99  Aligned_cols=200  Identities=16%  Similarity=0.210  Sum_probs=148.6

Q ss_pred             CeEEEeec---CCCCCee--EEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEe
Q psy535           18 GTLVINPV---GSDDSGL--YMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWT   92 (460)
Q Consensus        18 ~~L~i~~~---~~~d~G~--Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~   92 (460)
                      +.|.|..+   +.+|+|.  |+|.+.|..|.. ...+.|.|...|...+.+....+.+|+.++|.|.+.  |.+ .++| 
T Consensus        56 ~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~-~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p~~-~i~W-  130 (265)
T 2oz4_A           56 DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ-ETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRA-KVTL-  130 (265)
T ss_dssp             SEEEEEEEEEECGGGCEEEEEEEEEEETTEEE-EEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC--TTS-EEEE-
T ss_pred             CeEEEEeecccccccCCcceEEEEEecCCCCc-EEEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc--CCC-EEEE-
Confidence            36777766   7888885  999999998874 678889997644333445556678899999999997  444 8999 


Q ss_pred             eCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC-CCcc-eeeEEEEEeeCCCceeeC--CCcccccCCCC
Q psy535           93 KDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH-GTQG-SSGQMEVLVRKPPAFTIK--PEAMYQRKVGE  168 (460)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-g~~~-~~~~~~v~v~~~p~~~~~--~~~~~~~~~g~  168 (460)
                       +|..+....       ..+.|.|..+..+|+|.|+|.|.|.. |... .+..+.|.|..+|.+...  |... .+..|+
T Consensus       131 -~g~~~~~~~-------~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~-~v~~g~  201 (265)
T 2oz4_A          131 -NGVPAQPLG-------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNW-TWPENS  201 (265)
T ss_dssp             -SSCSSSCCS-------SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEE-EEETTC
T ss_pred             -CCEEccCCC-------CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCcc-EEcCCC
Confidence             777764211       12458899999999999999998544 5542 235667777777766544  2233 577899


Q ss_pred             eEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535          169 SVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       169 ~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      .++|.|.+   .|.|.|.+.|++++.....       .+.+.  .+...|+|.|+|.|.|..|.....+.|.|..
T Consensus       202 ~~~l~C~~---~g~P~p~i~W~~~~~~~~~-------~g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  264 (265)
T 2oz4_A          202 QQTPMCQA---WGNPLPELKCLKDGTFPLP-------IGESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLS  264 (265)
T ss_dssp             EECCCCCC---EEESCCEEEEEETTTEECC-------TTSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eEEEEeEC---ccCCCCeEEEEECCcccCC-------CCcEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence            99999998   7999999999996552222       22222  3778999999999999999999888888763

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.91  E-value=1e-23  Score=188.34  Aligned_cols=267  Identities=14%  Similarity=0.212  Sum_probs=170.5

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecCC---CCCeEEEeeCCe---------------ecCccccccEEEe----ecCeEE
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKANP---TFQYVTWTKDKR---------------LLEPYQTKDIVVM----QNGSLL  115 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~~v~W~~~~~---------------~~~~~~~~~~~~~----~~~~l~  115 (460)
                      .+...|....+.+|++++|.|.+.+.+   +...+.|++++.               .+......++...    .+++|.
T Consensus        16 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~   95 (331)
T 3u83_A           16 QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIR   95 (331)
T ss_dssp             -----CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEE
T ss_pred             ceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEE
Confidence            344556778889999999999998752   223699999541               1211223444443    345799


Q ss_pred             EeecCCCCCeEEEEEE-EcCCCCcceeeEEEEEeeCCCceee--CCCcccccCCC---CeEEEEeeeeccCCCCCCeeEE
Q psy535          116 FTRVNQNHQGRYTCTP-YNAHGTQGSSGQMEVLVRKPPAFTI--KPEAMYQRKVG---ESVDMHCEAQEAEGTQKPTITW  189 (460)
Q Consensus       116 i~~~~~~d~G~y~C~~-~~~~g~~~~~~~~~v~v~~~p~~~~--~~~~~~~~~~g---~~~~l~C~~~~~~~~p~~~~~W  189 (460)
                      |.+++.+|+|.|+|.+ .+..+.  .+..+.|.|..+|.+..  .+... .+..|   +.+.|.|.+.  .+.|.+.+.|
T Consensus        96 I~~v~~~D~G~Y~C~~~~~~~~~--~~~~~~l~V~~~p~~~~~~~~~~~-~~~~g~~~~~~~l~C~~~--~~~p~~~i~W  170 (331)
T 3u83_A           96 LSRLELEDEGVYICEFATFPTGN--RESQLNLTVMAKPTNWIEGTQAVL-RAKKGQDDKVLVATCTSA--NGKPPSVVSW  170 (331)
T ss_dssp             ECSCCGGGCEEEEEEEEEETTEE--EEEEEEEEEEBCCEEEEEECSSCE-EECTTCCCCEEEEEEEEE--EEBSCCEEEE
T ss_pred             EcccCcccCcEEEEEEEecCCCc--cEEEEEEEEecCCcceeecCCCce-eecCCCccceEEEEEEec--CCcCCceEEE
Confidence            9999999999999985 444454  45566777777777643  23332 56667   7899999832  7889999999


Q ss_pred             EcCCCccCCcccE------EEecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCC--CCceeeeeecceE
Q psy535          190 QRRDGVALPKNRV------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHA--PYNITGVATEFSV  261 (460)
Q Consensus       190 ~~~~~~~~~~~~~------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~--p~~~~~~~~~~~~  261 (460)
                      +++..........      ......|.|..+...|.|.|+|.|.|..|.......|.|..+|...  +........+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~  250 (331)
T 3u83_A          171 ETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDV  250 (331)
T ss_dssp             EESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCE
T ss_pred             EcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeE
Confidence            9843222111111      1122357888889999999999999999888777777765422100  0000112234678


Q ss_pred             EEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEc-cCccCccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535          262 TLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITIN-RLTPATTYEFQVVGKNELGDGMLSNIVVVK  337 (460)
Q Consensus       262 ~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~  337 (460)
                      .|.|..  .+.+.+  ..+.|++++...... ...   ....|.|. ++...+.|.|+|.|.|..|....+..+.+.
T Consensus       251 ~l~C~~--~g~p~p--~~i~W~~~~~~~~~~-~~~---~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  319 (331)
T 3u83_A          251 KLTCKA--DANPPA--TEYHWTTLNGSLPKG-VEA---QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT  319 (331)
T ss_dssp             EEEEEE--EEESCC--CEEEEEETTBSCCTT-EEE---ETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCB
T ss_pred             EEEEeC--cCCCCC--CEEEEEECCCccccc-cee---cCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEe
Confidence            888874  333333  225777765532111 111   34579999 899999999999999999976444444444

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.91  E-value=1.9e-22  Score=164.87  Aligned_cols=180  Identities=19%  Similarity=0.369  Sum_probs=140.3

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEe----ecCeEEEeecCCCCCeEEEEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVM----QNGSLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~  130 (460)
                      |+.+...|....+.+|++++|.|.+.+.++.+.+.|++ ++..+.. ...++...    ..+.|.|.++..+|+|.|+|.
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV   80 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECC-BSSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccC-CCCeEEEEECCCCceEEEEccCCcccCEEEEEE
Confidence            45667788888899999999999999977455899999 8887764 23344433    235799999999999999999


Q ss_pred             EEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC--cccEEE-ecc
Q psy535          131 PYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--KNRVKI-VGG  207 (460)
Q Consensus       131 ~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~--~~~~~~-~~~  207 (460)
                      +.+..+. ..+..+.|.|..+|.+...+... .+..|+.+.|.|.+   .+.|.+.+.|++++.....  ..++.. .++
T Consensus        81 ~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  155 (191)
T 1epf_A           81 VTAEDGT-QSEATVNVKIFQKLMFKNAPTPQ-EFKEGEDAVIVCDV---VSSLPPTIIWKHKGRDVILKKDVRFIVLSNN  155 (191)
T ss_dssp             EEETTTE-EEEEEEEEEEECCSEEEECCSSE-ECCTTSCEEECCEE---ECSSCCEEEEEETTEEGGGGCCTTEEECTTS
T ss_pred             EEcCCCc-ceEEEEEEEeecCceEecCCCcE-eecCCCeEEEEEEE---CCCCCCEEEEEECCEEeeccCCceEEEecCC
Confidence            9998753 36777888888899888877765 68899999999999   6899999999995543322  223333 355


Q ss_pred             eEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          208 NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       208 ~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      .|.|.++...|.|.|+|.|.|..+.......+.+
T Consensus       156 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             eEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            8999999999999999999998865555544443

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.90  E-value=8e-23  Score=167.98  Aligned_cols=182  Identities=18%  Similarity=0.319  Sum_probs=139.3

Q ss_pred             ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEE
Q psy535           54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~  130 (460)
                      ..+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+..  ..+.....++   +|.|.++..+|+|.|+|.
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   81 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLP-DIKWYRFGKELIQ--SRKYKMSSDGRTHTLTVMTEEQEDEGVYTCI   81 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEEESCC-EEEEEETTEEECC--CSSEEEEESSSEEEEEEECCSGGGCEEEEEE
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEecCCCC-EEEEEECCEECCC--CccEEEEeCCCEEEEEEecCCccCCEEEEEE
Confidence            456778888888889999999999999887765 7999999998863  3444444554   799999999999999999


Q ss_pred             EEcCCCCcceeeEEEEEeeCCCceeeC--CCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEec--
Q psy535          131 PYNAHGTQGSSGQMEVLVRKPPAFTIK--PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG--  206 (460)
Q Consensus       131 ~~~~~g~~~~~~~~~v~v~~~p~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~--  206 (460)
                      +.|..+.....  +.|.|..+|.+...  ......+..|+.+.|.|.+   .+.|.+.+.|++++.......+.....  
T Consensus        82 ~~n~~~~~~~~--~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~p~v~W~~~~~~~~~~~~~~~~~~~  156 (197)
T 3lcy_A           82 ATNEVGEVETS--SKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY---IGRPVPAMTWFHGQKLLQNSENITIENTE  156 (197)
T ss_dssp             EECSSCEEEEE--EEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEE---EEESCCEEEEEETTEECCCCSSEEEEECS
T ss_pred             EECCCCceeEE--EEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEE---eeeeCCeeEEeECCEECCCCCceEEEEcC
Confidence            99888775444  44444545544322  1122256789999999999   688999999999554444444554433  


Q ss_pred             --ceEEEccccc-eeceEEEEEEecccceeeeeeEEEEec
Q psy535          207 --GNITIEGLRR-VDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       207 --~~l~i~~~~~-~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                        ..|.|.++.. .|.|.|+|.|.|..|.....+.|.|.+
T Consensus       157 ~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          157 HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             SEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             CEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence              4699999985 899999999999999998888887753

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.90  E-value=1.8e-22  Score=170.32  Aligned_cols=191  Identities=21%  Similarity=0.318  Sum_probs=148.4

Q ss_pred             CCCCCCceeee-eecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535          245 QPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN  323 (460)
Q Consensus       245 ~p~~p~~~~~~-~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n  323 (460)
                      ++.+|.++... ....++.|+|.++   +. .+.+|.+.|+..+...+...... .....+.|.+|.+++.|.|+|.|.|
T Consensus         5 p~~~P~~l~~~~~~~~si~l~W~~p---~g-~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~n   79 (234)
T 3f7q_A            5 DLGAPQNPNAKAAGSRKIHFNWLPP---SG-KPMGYRVKYWIQGDSESEAHLLD-SKVPSVELTNLYPYCDYEMKVCAYG   79 (234)
T ss_dssp             CCCCCEEEEEEECSSSCEEEEEECC---SS-CCCEEEEEEEETTSCGGGCEEEE-ESSSEEEECSCCTTCEEEEEEEEEE
T ss_pred             CCCCCcceEEEEcCCCEEEEEEECC---CC-ccceEEEEEEECCCCccceEEEc-CCccEEEECCCCCCCEEEEEEEEEe
Confidence            67788887754 4566999999986   22 34799999887654332211111 2567899999999999999999999


Q ss_pred             CCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccc
Q psy535          324 ELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG  402 (460)
Q Consensus       324 ~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~  402 (460)
                      ..|.+..+..+.+.+...+|.+|.++.+...+ +++.|+|++|...++.+.+|.|+|+..+....               
T Consensus        80 ~~G~g~~s~~~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~---------------  144 (234)
T 3f7q_A           80 AQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNR---------------  144 (234)
T ss_dssp             TTEECCCCCCEEEECCCCCCCCCCCCEEEECSSSCEEEECCCCSCCSSCCCEEEEEEEEBCTTSC---------------
T ss_pred             CCCcCCCCCeEEEEcCCCCCCCCCccEEEEecCCEEEEEEcCCCCCCCceeEEEEEEEECCCCCC---------------
Confidence            99999999999999998889999999998776 58999999998778899999999997543100               


Q ss_pred             cceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCce-eEeecC
Q psy535          403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI-VVVKTK  460 (460)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~-~~~~T~  460 (460)
                           ....|..+.......+.+.|.+|.|++.|.|+|+|.|..|.|++|.. +.++|+
T Consensus       145 -----~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~T~  198 (234)
T 3f7q_A          145 -----PIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQ  198 (234)
T ss_dssp             -----BSSCCEECCCSCTTCCEEEEECCCTTCCEEEEEEEEETTEECCCEEEEECGGGS
T ss_pred             -----ccCcceEEEecCCcceEEEeCCCCCCCeEEEEEEEECCCccCCCcCceeEeecC
Confidence                 00113333333456679999999999999999999999999999984 666663

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.90  E-value=1.1e-22  Score=164.90  Aligned_cols=175  Identities=20%  Similarity=0.321  Sum_probs=132.2

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee---cCeEEEeecCCCCCeEEEEEEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~  132 (460)
                      +|.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+............   .+.|.|.++..+|+|.|+|.+.
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   80 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEP-DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE   80 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSC-CEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCC-eEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence            3566677888889999999999999987665 79999999988643222222111   2579999999999999999999


Q ss_pred             cCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCcccEEEecceEEE
Q psy535          133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPKNRVKIVGGNITI  211 (460)
Q Consensus       133 ~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~l~i  211 (460)
                      +..+.. .+..+.|.|..+|.+...+... .+..|+.+.|.|.+   .+.|.| .+.|++++. .+....  .....|.|
T Consensus        81 ~~~~~~-~~~~~~l~V~~~p~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~p~~v~W~~~~~-~~~~~~--~~~~~L~i  152 (182)
T 1rhf_A           81 DGGETE-ISQPVWLTVEGVPFFTVEPKDL-AVPPNAPFQLSCEA---VGPPEPVTIVWWRGTT-KIGGPA--PSPSVLNV  152 (182)
T ss_dssp             SCTTCE-ECCCEEEEEECSCEEEECCCCE-EECTTCCEEEEEEE---ECSSSCCEEEEEETTE-ECSCSE--ESSEEEEE
T ss_pred             cCCCcE-EEEEEEEEEecCCeEEecCcce-EecCCCEEEEEeEe---cCCCCCCEEEEEcCCe-ECCCCC--CCceEEEE
Confidence            876543 4556777888899988887765 68899999999999   688999 999999544 443222  14567888


Q ss_pred             ccccceeceEEEEEEecccceeee-eeEEEE
Q psy535          212 EGLRRVDFGYYECVVSNEVATIVQ-AAQLVV  241 (460)
Q Consensus       212 ~~~~~~~~g~y~C~a~n~~g~~~~-~~~l~v  241 (460)
                      .++  .|+|.|+|.|.|..|.... .+.|.|
T Consensus       153 ~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          153 TGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             CCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            888  4789999999999998753 666655

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.90  E-value=2.5e-21  Score=182.46  Aligned_cols=313  Identities=15%  Similarity=0.133  Sum_probs=177.8

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCC-----------C-cceeeeEEEEec----CCeeE-Eccee
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIG-----------E-PQAAQAYLNVEF----PAKVT-FTPTV   65 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~-----------~-~~~~~~~l~v~~----~p~~~-~~~~~   65 (460)
                      ..+|+++..+     .+|.|.+++.+|+|.|.|.+.+..+           . .....+.|.|..    +|.+. ..+..
T Consensus        65 ~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~  144 (512)
T 1zvo_C           65 LRGRVTISVDTSRNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGC  144 (512)
T ss_pred             cCCceEEEecCCCCEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCc
Confidence            4689998754     4899999999999999999988642           1 112446777763    34433 22221


Q ss_pred             eeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEE-----eecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535           66 QYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVV-----MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                      .....++.++|.|.+.+. |.+..|+|++++.............     ...+.|.|.....+ .|.|+|.|.|..+...
T Consensus       145 ~~~~~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~  223 (512)
T 1zvo_C          145 RHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSK  223 (512)
T ss_pred             ccccCCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCce
Confidence            101235889999999987 5444899999764321101111110     11124888877777 9999999999887654


Q ss_pred             eee---------EEEEEeeCC----------------------------------------------------CceeeCC
Q psy535          140 SSG---------QMEVLVRKP----------------------------------------------------PAFTIKP  158 (460)
Q Consensus       140 ~~~---------~~~v~v~~~----------------------------------------------------p~~~~~~  158 (460)
                      ...         .+.|.+..|                                                    |.+.+.+
T Consensus       224 ~~~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~  303 (512)
T 1zvo_C          224 KEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLT  303 (512)
T ss_pred             EEEecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEEC
Confidence            443         112333222                                                    3332222


Q ss_pred             CcccccCCCCeEEEEeeeeccCCCCC--CeeEEEcCCCccCCcc---cEE-------EecceEEEccccceeceEEEEEE
Q psy535          159 EAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQRRDGVALPKN---RVK-------IVGGNITIEGLRRVDFGYYECVV  226 (460)
Q Consensus       159 ~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~~~~~~~---~~~-------~~~~~l~i~~~~~~~~g~y~C~a  226 (460)
                      .....+..|+.++|.|.+   .+..+  ..+.|++++.......   ...       .....|.|......|.|.|+|.|
T Consensus       304 p~~~~~~~g~~~~L~C~v---~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a  380 (512)
T 1zvo_C          304 PAVQDLWLRDKATFTCFV---VGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTL  380 (512)
T ss_pred             CChHHhccCCceEEEEEE---eceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEE
Confidence            222245679999999999   55433  4899999654322110   011       01234888888888999999999


Q ss_pred             ecccceeeeeeEEEEecCC--CCCCCceee--eeecceEE-EEeecCCCCCCCceeeEEEEEEecCCCCeee-----eec
Q psy535          227 SNEVATIVQAAQLVVEGTQ--PHAPYNITG--VATEFSVT-LEWLPGYSGGPDLKQNYVIWYREQGNKDWLP-----IPV  296 (460)
Q Consensus       227 ~n~~g~~~~~~~l~v~~~~--p~~p~~~~~--~~~~~~~~-l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  296 (460)
                      .|..+... ...+......  +.+|.....  ......+. |.|..  .+..++ .-.+.|++++.......     ...
T Consensus       381 ~n~~~~~~-~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~L~C~~--~g~~P~-~i~v~W~k~g~~~~~~~~~~~~~~~  456 (512)
T 1zvo_C          381 NHPSLPPQ-RLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEV--SGFSPP-NILLMWLEDQREVNTSGFAPARPPP  456 (512)
T ss_pred             EeCCCCCC-ceeEEeecCCCCCCCCEEEEEccCcCCCCceEEEEEE--eeeCCC-CcEEEEEECCeECcCccccccceeE
Confidence            99877543 2222221111  122322111  11345577 88873  332222 12366777654321110     001


Q ss_pred             cCCCC-----ceEEEccCccCccEEEEEEEEcCCCCC
Q psy535          297 TPPGS-----TQITINRLTPATTYEFQVVGKNELGDG  328 (460)
Q Consensus       297 ~~~~~-----~~~~i~~l~~~~~~~~~~~a~n~~G~~  328 (460)
                      ...+.     ..+.+......+.+.|.|.|.|.....
T Consensus       457 ~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~  493 (512)
T 1zvo_C          457 QPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRT  493 (512)
T ss_pred             CCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCC
Confidence            11121     134444444555999999999987543

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.90  E-value=2.2e-22  Score=167.23  Aligned_cols=182  Identities=24%  Similarity=0.346  Sum_probs=134.7

Q ss_pred             ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe--ecCeEEEeecC-CCCCeEEEEE
Q psy535           54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--QNGSLLFTRVN-QNHQGRYTCT  130 (460)
Q Consensus        54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~-~~d~G~y~C~  130 (460)
                      ..+|.|...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+...........  ....|.|.++. .+|+|.|+|.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   82 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRP-KIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECV   82 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEE
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCC-EEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEE
Confidence            457888888888899999999999999988775 8999999998864221111111  12359999994 9999999999


Q ss_pred             EEcCCCCcceeeEEEEEeeCC-------CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc---c
Q psy535          131 PYNAHGTQGSSGQMEVLVRKP-------PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK---N  200 (460)
Q Consensus       131 ~~~~~g~~~~~~~~~v~v~~~-------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~---~  200 (460)
                      +.|..|....  .+.|.|..+       |.+...+... .+..|+.+.|.|.+   .+.|.+.+.|++++..+...   .
T Consensus        83 a~n~~g~~~~--~~~l~V~~~~~~~~~~p~~~~~~~~~-~~~~g~~v~l~C~~---~g~p~p~v~W~~~g~~l~~~~~~~  156 (212)
T 2yd6_A           83 ASNNVGEISV--STRLTVLREDQIPRGFPTIDMGPQLK-VVERTRTATMLCAA---SGNPDPEITWFKDFLPVDTSNNNG  156 (212)
T ss_dssp             EEETTEEEEE--EEEEEEECGGGCCTTCCEEEECCCCE-EEETTSCEEEEEEE---ECSSCCEEEEEETTEEC------C
T ss_pred             EEcCCCcEEE--EEEEEEeccCccCCCcceeecCCcce-eEecCCCEEEEEEe---cCCCCCeEEEEECCccccCcCCCc
Confidence            9998887544  444444432       5666666554 57889999999999   78899999999954433221   2


Q ss_pred             cEEEe----cceEEEccccceeceEEEEEEecccceeeee-eEEEEe
Q psy535          201 RVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVVE  242 (460)
Q Consensus       201 ~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~-~~l~v~  242 (460)
                      ++...    ...|.|.++...|.|.|+|.|.|..|....+ ..+.+.
T Consensus       157 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          157 RIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             CEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             eEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence            33322    2579999999999999999999999986544 455554

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.90  E-value=3.5e-23  Score=177.30  Aligned_cols=208  Identities=14%  Similarity=0.241  Sum_probs=116.6

Q ss_pred             EeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCC----CCeE
Q psy535           14 IKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPT----FQYV   89 (460)
Q Consensus        14 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~~v   89 (460)
                      +...|.+.   ++++|+|.|+|.|.   |.. .....+.+..++.+...|....+.+|++++|.|.+.+.++    .+.+
T Consensus         3 ~~~~~~~~---v~~~dsg~Y~C~a~---g~~-~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v   75 (254)
T 2c1o_A            3 LQQSGAEL---VRPGTSVKLSCKAS---GYS-FTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYL   75 (254)
T ss_dssp             ------------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCE
T ss_pred             eecCCcce---ecCCccEEEEEcCc---hhh-hhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCce
Confidence            33444444   78999999999998   332 3334444555777777788899999999999999988773    2479


Q ss_pred             EEeeCC--eec----------CccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC---C
Q psy535           90 TWTKDK--RLL----------EPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK---P  151 (460)
Q Consensus        90 ~W~~~~--~~~----------~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~---~  151 (460)
                      .|+|++  ..+          ......++.....+   +|.|.+++.+|+|.|+|.|.|..+.. ......+.|..   +
T Consensus        76 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~-~~~~~~l~V~~~~~~  154 (254)
T 2c1o_A           76 NWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPT-FGAGTKLELKRADAA  154 (254)
T ss_dssp             EEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCE-EBCCEEEEECCCCBC
T ss_pred             EEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceE-ecCCEEEEECCCCCC
Confidence            999843  221          11112444444333   79999999999999999999875532 11122344432   5


Q ss_pred             CceeeCCCcccccCCCCeEEEEeeeeccCC-CCC-CeeEEEcCCCccCCcccEE-----------EecceEEEcccccee
Q psy535          152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQK-PTITWQRRDGVALPKNRVK-----------IVGGNITIEGLRRVD  218 (460)
Q Consensus       152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~-~~~~W~~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~~  218 (460)
                      |.+...+... ....|+.++|.|.+   .+ .|. +.+.|++++..+.......           .....|.|.++...|
T Consensus       155 P~v~~~~~~~-~~~~g~~v~l~C~~---~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d  230 (254)
T 2c1o_A          155 PTVSIFPPSS-EQLTSGGASVVCFL---NNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYER  230 (254)
T ss_dssp             CEEEEECCCH-HHHHTTEEEEEEEE---EEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHT
T ss_pred             CeeEeecCCh-hhccCCcEEEEEEE---ecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccC
Confidence            6666544433 23357799999998   45 344 4699999554333220110           123468999999999


Q ss_pred             ceEEEEEEeccccee
Q psy535          219 FGYYECVVSNEVATI  233 (460)
Q Consensus       219 ~g~y~C~a~n~~g~~  233 (460)
                      .|.|+|.|.|.....
T Consensus       231 ~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          231 HNSYTCEATHKTSTS  245 (254)
T ss_dssp             CCEEEEEEECTTCSS
T ss_pred             CCeEEEEEEcCCCCC
Confidence            999999999976543

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.90  E-value=4e-23  Score=185.20  Aligned_cols=219  Identities=13%  Similarity=0.189  Sum_probs=141.2

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe----cCCeeEEcceeeeecceeeEEEEE
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVVQC   78 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C   78 (460)
                      ..+|+.+..+     ++|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|.    .+|.+...+....+.+|++++|.|
T Consensus        64 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C  142 (344)
T 1za6_B           64 FKGKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYW-GQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC  142 (344)
T ss_dssp             TBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTCEE-CCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEE
T ss_pred             cCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCccee-cCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEE
Confidence            4689998764     389999999999999999999854332 455678887    244544433334467899999999


Q ss_pred             EEecC-CCCCeEEEeeCCeecCccccccEE-----EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE------
Q psy535           79 HIKAN-PTFQYVTWTKDKRLLEPYQTKDIV-----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV------  146 (460)
Q Consensus        79 ~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v------  146 (460)
                      .+.|. |.++.|+|++++..+.........     ....+.|.|.++..+| |.|+|.|.|..+.......+.+      
T Consensus       143 ~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~  221 (344)
T 1za6_B          143 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKT  221 (344)
T ss_dssp             EEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC---
T ss_pred             EEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccc
Confidence            99987 443589999999764311111110     0112368899888888 9999999998775433333321      


Q ss_pred             ----------------EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCC-C-CCeeEEEcCCCccCCccc--EE-Ee
Q psy535          147 ----------------LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-Q-KPTITWQRRDGVALPKNR--VK-IV  205 (460)
Q Consensus       147 ----------------~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p-~~~~~W~~~~~~~~~~~~--~~-~~  205 (460)
                                      .+..+|.+.+.+.....+ .|..++|.|.+   .|. | .+.+.|++++..+.....  .. ..
T Consensus       222 ~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~---~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~  297 (344)
T 1za6_B          222 HTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDEL-TKNQVSLTCLV---KGFYPSDIAVEWESNGQPENNYKTTPPVLDS  297 (344)
T ss_dssp             -----------------CCBCCEEEEECCCGGGG-GSSSEEEEEEE---EEEBSSCCEEEEESSSSCCCSEEECCCEECT
T ss_pred             cccCCCCCCccccccCCCCcCCEEEEeCCChHhc-cCCcEEEEEEE---eeEECCCeEEEEEECCeECCCcEecceEECC
Confidence                            123566665554333233 35569999999   563 4 468999995543322111  11 11


Q ss_pred             cc------eEEEccccceeceEEEEEEecccce
Q psy535          206 GG------NITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       206 ~~------~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      ++      .|.|......|.|.|+|.|.|....
T Consensus       298 ~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~  330 (344)
T 1za6_B          298 DGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  330 (344)
T ss_dssp             TSCEEEEEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred             CCcEEEEEEEEEChHHccCCCeEEEEEEcCCCC
Confidence            22      3445555556689999999986543

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=99.90  E-value=3.9e-22  Score=163.82  Aligned_cols=184  Identities=27%  Similarity=0.452  Sum_probs=145.5

Q ss_pred             CCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN  323 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n  323 (460)
                      +|.+|.++.. .....++.|+|.++...+..++..|.+.++..+...|...... .....+.+.+|.+++.|.|+|.|.|
T Consensus         5 ~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~~~L~p~t~Y~~~V~a~~   83 (197)
T 3lpw_A            5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATN-CHKTSWKVDQLQEGCSYYFRVLAEN   83 (197)
T ss_dssp             SCCCCEEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCSSCEEEEEE-ECSSEEEECCCCTTCEEEEEEEEEE
T ss_pred             CCCCCCCcEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECCCCccEEeecC-CCccEEEEcCCCCCCEEEEEEEEEc
Confidence            5777877764 4677899999998765555545799999998877777665432 2667899999999999999999999


Q ss_pred             CCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCC-ccceEEEEEEEEcCCeeeeccccCCCCccccc
Q psy535          324 ELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERA-SLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL  401 (460)
Q Consensus       324 ~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~-~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~  401 (460)
                      ..|.+..+....+.+...+|.+|.++.+...+ +++.|+|.+|...+ +.+.+|.|+|+..+..                
T Consensus        84 ~~g~~~~s~~~~~~t~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~----------------  147 (197)
T 3lpw_A           84 EYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSD----------------  147 (197)
T ss_dssp             TTEECCCEECSSCEESCCCCCCCSCEEEEEECSSCEEEEECCCSCCTTSCCCEEEEEEEETTCS----------------
T ss_pred             CccccCCCCCccceecCCCCCCCcccEEEeccCCeEEEEecCCCcCCCCcccEEEEEEEeCCCC----------------
Confidence            99988877666666666778999999988766 69999999987654 4899999999975530                


Q ss_pred             ccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeE
Q psy535          402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV  456 (460)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~  456 (460)
                               .|..+..  ...+++.+.+|.|++.|.|+|+|.|..|.|++|....
T Consensus       148 ---------~~~~~~~--~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~s~  191 (197)
T 3lpw_A          148 ---------KWATCAT--VKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSV  191 (197)
T ss_dssp             ---------CCEEEEE--ESSSEEEECCCCTTCEEEEEEEEEETTEECCCEECSS
T ss_pred             ---------ceEEeec--ccccEEEeCCcCCCCEEEEEEEEEeCCccCCCccCcc
Confidence                     1222111  2567899999999999999999999999999887643

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.89  E-value=4.7e-22  Score=165.50  Aligned_cols=181  Identities=21%  Similarity=0.309  Sum_probs=136.5

Q ss_pred             eeecceEEEEeecCCCCCCCceeeEEEEEEecCC-CCeeeeec-----------cCCCCceEEEccCccCccEEEEEEEE
Q psy535          255 VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN-KDWLPIPV-----------TPPGSTQITINRLTPATTYEFQVVGK  322 (460)
Q Consensus       255 ~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~i~~l~~~~~~~~~~~a~  322 (460)
                      .....++.|+|.++...+. .+.+|.+.++..+. ..|.....           .......+.+.+|.+++.|.|+|.|.
T Consensus        12 ~~~~~sv~l~W~~p~~~~~-~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   90 (214)
T 2ibg_A           12 RLSDESVMLRWMVPRNDGL-PIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAV   90 (214)
T ss_dssp             EEETTEEEEEEEEECCSSC-CEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCTTCEEEEEEEEE
T ss_pred             EecCCEEEEEEECCCCCCC-CceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcCCCEEEEEEEEE
Confidence            3467799999998776664 45899999988543 56655432           11234678999999999999999999


Q ss_pred             cCCCCCCCCC-cEEEEccCC----CCCCCcceEEEeec-ceEEEEecCCC-CCCccceEEEEEEEEcCCeeeeccccCCC
Q psy535          323 NELGDGMLSN-IVVVKTKGP----KPGPPRNVSVTEVN-NGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRP  395 (460)
Q Consensus       323 n~~G~~~~s~-~~~~~~~~~----~P~~p~~~~~~~~~-~~v~l~W~~~~-~~~~~i~~y~i~~~~~~~~~~~~~~~~~~  395 (460)
                      |..|.+..+. ...+.+...    +|.+|.++.+...+ +++.|+|++|. ..++.+.+|.|+|+..+.           
T Consensus        91 n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~-----------  159 (214)
T 2ibg_A           91 YSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSS-----------  159 (214)
T ss_dssp             ETTSCEEECCCCCCEECCCSTTSCCCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTC-----------
T ss_pred             ecCCCCCCCCCcccEEeccCcCCCCCCCCcccEEEEccCCeEEEEEeCCCccCCCCcceEEEEEEECCC-----------
Confidence            9999876655 233333222    34578888887766 58999999996 457899999999997542           


Q ss_pred             CcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          396 EENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                                   ...|..+.......+.++|.+|.|++.|.|+|+|+|..|.|++|..+.++|.
T Consensus       160 -------------~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  211 (214)
T 2ibg_A          160 -------------AGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQ  211 (214)
T ss_dssp             -------------CSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEEECC
T ss_pred             -------------CcceEEeeccCCcceEEEeCCCCCCCEEEEEEEEEcCCccCCCcceEeeEec
Confidence                         0123333333345678999999999999999999999999999999999985

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.89  E-value=7.7e-22  Score=170.08  Aligned_cols=234  Identities=17%  Similarity=0.190  Sum_probs=152.7

Q ss_pred             eecceeeEEEEEEEec-CCCC-CeEEEeeCCeecCccccccEEEeecCeEEEeec---CCCCCeE--EEEEEEcCCCCcc
Q psy535           67 YLPFRLQGVVQCHIKA-NPTF-QYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV---NQNHQGR--YTCTPYNAHGTQG  139 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~-~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~G~--y~C~~~~~~g~~~  139 (460)
                      .+.+|++++|.|.+.+ .|.+ ..++|+|+|..+..     .....+..|.+..+   +..|+|.  |+|.+.|..|...
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~-----~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~   88 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-----TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQE   88 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC-----EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEE
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc-----eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcE
Confidence            5788999999999998 5432 37999999998753     22233446777665   7788885  9999999888754


Q ss_pred             eeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceec
Q psy535          140 SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDF  219 (460)
Q Consensus       140 ~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~  219 (460)
                      ....+.|....+|.+..  ... .+..|+.++|.|.+   .  |.+.+.|  ++. .+....   ....|.+..+...|.
T Consensus        89 ~~~~l~V~~~p~p~~~~--~~~-~v~~G~~v~l~C~~---~--p~~~i~W--~g~-~~~~~~---~~~~l~i~~~~~~~~  154 (265)
T 2oz4_A           89 TLQTVTIYSFPAPNVIL--TKP-EVSEGTEVTVKCEA---H--PRAKVTL--NGV-PAQPLG---PRAQLLLKATPEDNG  154 (265)
T ss_dssp             EEEEEEEECCCCCEEEE--SCS-EEETTCEEEEEEEC---C--TTSEEEE--SSC-SSSCCS---SEECCEEECCGGGTT
T ss_pred             EEEEEEEeCCCCceeec--CCc-eecCCCcEEEEEEc---c--CCCEEEE--CCE-EccCCC---CcEEEEEccccccCC
Confidence            44444443322444443  233 46779999999997   4  8899999  333 332211   234578889999999


Q ss_pred             eEEEEEEeccc-ceee---eeeEEEEecCCCCC----CCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe
Q psy535          220 GYYECVVSNEV-ATIV---QAAQLVVEGTQPHA----PYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW  291 (460)
Q Consensus       220 g~y~C~a~n~~-g~~~---~~~~l~v~~~~p~~----p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (460)
                      |.|+|.|.|.. |...   ....|.|..+|...    |... ....+..+.|.|.  ..+.+.+.   +.|++++.    
T Consensus       155 g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~-~v~~g~~~~l~C~--~~g~P~p~---i~W~~~~~----  224 (265)
T 2oz4_A          155 RSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNW-TWPENSQQTPMCQ--AWGNPLPE---LKCLKDGT----  224 (265)
T ss_dssp             EEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEE-EEETTCEECCCCC--CEEESCCE---EEEEETTT----
T ss_pred             ceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCcc-EEcCCCeEEEEeE--CccCCCCe---EEEEECCc----
Confidence            99999998644 6544   55666665432211    1111 1234567777776  45555553   67888765    


Q ss_pred             eeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEE
Q psy535          292 LPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV  336 (460)
Q Consensus       292 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~  336 (460)
                      .   ... ....+   .+...+.|.|+|.|.|..|....+..+.+
T Consensus       225 ~---~~~-~g~~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  262 (265)
T 2oz4_A          225 F---PLP-IGESV---TVTRDLEGTYLCRARSTQGEVTREVTVNV  262 (265)
T ss_dssp             E---ECC-TTSCE---ECCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             c---cCC-CCcEE---EeehhhCeEEEEEEECCCCcEEEEEEEEE
Confidence            1   111 11122   37789999999999999986655544444

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.89  E-value=2.1e-22  Score=165.56  Aligned_cols=169  Identities=15%  Similarity=0.182  Sum_probs=129.6

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      .|.+...|....+.+|++++|.|.+.+.|.+..+.|+|+|..+...         .+.|.|.+++.+|+|.|+|.+.|..
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~---------~~~L~i~~v~~~D~G~Y~C~a~n~~   77 (204)
T 3sgj_C            7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ---------ASSYFIDAATVDDSGEYRCQTQLST   77 (204)
T ss_dssp             BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC---------SSEEEESSCCGGGCEEEEEEETTSB
T ss_pred             CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC---------ccEEEEecccccCCEEEEEEeCCCc
Confidence            3556677777788999999999999998776569999999988632         2679999999999999999998732


Q ss_pred             CCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEcccc
Q psy535          136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLR  215 (460)
Q Consensus       136 g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~  215 (460)
                          .+..+.|.|..+|.+...+..  .+..|+.++|.|.+.  .+.|.+.+.|++++. .+   ........|.|.++.
T Consensus        78 ----~s~~~~l~V~~~p~~~~~~~~--~v~~G~~v~L~C~~~--~~~p~~~v~W~k~g~-~~---~~~~~~~~L~i~~v~  145 (204)
T 3sgj_C           78 ----LSDPVQLEVHIGWLLLQAPRW--VFKEEDPIHLRCHSW--KNTALHKVTYLQNGK-GR---KYFHHNSDFYIPKAT  145 (204)
T ss_dssp             ----CCCCEEEEEECSSEEEECSCS--EEETTCCEEEEEEEG--GGCCCEEEEEEETTE-EE---EEEEECCCEEESSCC
T ss_pred             ----ccccEEEEEecCceEecCCce--eEeCCCcEEEEEEec--CCCCCceEEEEECCc-Ee---ecccCCceEEECcCC
Confidence                344566777777766665552  577899999999983  445678999999543 32   122346789999999


Q ss_pred             ceeceEEEEEEec-ccceeeeeeEEEEecCC
Q psy535          216 RVDFGYYECVVSN-EVATIVQAAQLVVEGTQ  245 (460)
Q Consensus       216 ~~~~g~y~C~a~n-~~g~~~~~~~l~v~~~~  245 (460)
                      ..|.|.|+|.|.| ..+..+..+.|.|..++
T Consensus       146 ~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~  176 (204)
T 3sgj_C          146 LKDSGSYFCRGLVGSKNVSSETVQITITQGL  176 (204)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             cccCEEEEEEEEeCCCceecCcEEEEEeCcC
Confidence            9999999999999 44556667778887643

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.89  E-value=2.6e-22  Score=167.04  Aligned_cols=182  Identities=16%  Similarity=0.278  Sum_probs=136.9

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeec----------CccccccEEEeecCeEEEeecCCCCCeE
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL----------EPYQTKDIVVMQNGSLLFTRVNQNHQGR  126 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~  126 (460)
                      ..+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+          ......++.. ..+.|.|.++..+|+|.
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~L~i~~v~~~D~G~   79 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYSGFSSP-RVEWKFVQGSTTALVCYNSQITAPYADRVTF-SSSGITFSSVTRKDNGE   79 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSE-EEEEEEEETTEEEEEEETTEECGGGTTTEEE-ETTEEEESCCCGGGCEE
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeCCCCCc-EEEEEECCCceeeEEecCCcccccccCcEEe-eceeEEEcccCcccCeE
Confidence            345566777888999999999999987655 79999987653          1112334443 34889999999999999


Q ss_pred             EEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-c-----
Q psy535          127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-N-----  200 (460)
Q Consensus       127 y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~-----  200 (460)
                      |+|.+.+..|....+..+.|.|..+|.+...+... .+..|+.+.|.|.+.  .+.|.+.+.|++++...+.. .     
T Consensus        80 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~-~~~~g~~~~l~C~~~--~~~p~~~i~W~~~~~~~l~~~~~~~~~  156 (212)
T 1f97_A           80 YTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPS-SVTIGNRAVLTCSEH--DGSPPSEYSWFKDGISMLTADAKKTRA  156 (212)
T ss_dssp             EEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCS-EEETTSCEEEEEECS--CCBSCCEEEEEETTEESBC-----CBS
T ss_pred             EEEEEEccCCCcccEEEEEEEEEcCCCCcccCCcc-ccCCCCeEEEEEEcc--cCcCCCEEEEEeCCccccccccccccc
Confidence            99999998775556777888888888776555444 578899999999932  78899999999955413332 1     


Q ss_pred             ----cEEE--ecceEEEccccceeceEEEEEEeccccee--eeeeEEEEec
Q psy535          201 ----RVKI--VGGNITIEGLRRVDFGYYECVVSNEVATI--VQAAQLVVEG  243 (460)
Q Consensus       201 ----~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~--~~~~~l~v~~  243 (460)
                          +...  ..+.|.|.++...|.|.|+|.|.|..|..  +..+.|.|..
T Consensus       157 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          157 FMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             CSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             ccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence                1222  25579999999999999999999999987  4455666553

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.89  E-value=1.7e-21  Score=170.42  Aligned_cols=214  Identities=19%  Similarity=0.205  Sum_probs=159.1

Q ss_pred             EEccccceeceEEEEEEecccceeeeeeEEEEecC---CCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEec
Q psy535          210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT---QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ  286 (460)
Q Consensus       210 ~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~---~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~  286 (460)
                      .+..+.....+.+++.|.|..|....+. +.+...   ++.++.++.......++.|+|.++..    .+.+|.+.|+..
T Consensus        64 ~~~~l~p~t~Y~~~V~A~n~~G~s~~s~-~~~~~~~~~~~~p~~~~~~~~~~~si~l~W~~p~~----~i~~Y~v~~~~~  138 (290)
T 3l5i_A           64 KLTVNLTNDRYLATLTVRNLVGKSDAAV-LTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRE----SVKKYILEWCVL  138 (290)
T ss_dssp             EEEEEECSSCEEEEEEEEESSCBCCCEE-EEECCTTCCCCCCCEEEEEEEETTEEEEEEECCSS----CCCEEEEEEEEE
T ss_pred             EEEEEcCCceEEEEEEEEcCCCCCCCce-EEeecccccCCCccceeEEEeCCCeEEEEEeCCCC----CCCcEEEEEEEC
Confidence            3445556677899999999988765443 333322   45555566655556799999998643    347999988876


Q ss_pred             CCC-----CeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEE
Q psy535          287 GNK-----DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVI  360 (460)
Q Consensus       287 ~~~-----~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l  360 (460)
                      ...     .|....  ......+.+.+|.+++.|.|++.|.|..|.+. +..+.+.+...+|..|..+.+...+ +++.|
T Consensus       139 ~~~~~~~~~~~~~~--~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~-~~~~~~~t~~~~P~~~p~~~~~~~~~~sv~l  215 (290)
T 3l5i_A          139 SDKAPCITDWQQED--GTVHRTYLRGNLAESKCYLITVTPVYADGPGS-PESIKAYLKQAPPSKGPTVRTKKVGKNEAVL  215 (290)
T ss_dssp             CSSSCCCCEEEEEE--TTCSEEECCSCCCTTCEEEEEEEEEETTEECC-CEEEEEESSCCCCSSCCCEEEEEECSSCEEE
T ss_pred             CCCCCCCcCeEEcc--CCCcceEEecCcCCccEEEEEEEEEeCCcccc-cEEEEeEccccCCCCCCeeeEeeccCCEEEE
Confidence            543     244442  33556788899999999999999999999886 4566666777777666677776665 69999


Q ss_pred             EecCC--CCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEE
Q psy535          361 SWQPP--LERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE  437 (460)
Q Consensus       361 ~W~~~--~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  437 (460)
                      +|+++  ...++.+.+|.|+|+..+. |...                            ......+.++|.+|.|++.|.
T Consensus       216 ~W~~~~~~~~~g~i~~Y~v~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~L~p~t~Y~  267 (290)
T 3l5i_A          216 EWDQLPVDVQNGFIRNYTIFYRTIIGNETAV----------------------------NVDSSHTEYTLSSLTSDTLYM  267 (290)
T ss_dssp             EECCCCHHHHSSCCCEEEEEEEETTSCCEEE----------------------------EEETTCSEEEECSCCTTCEEE
T ss_pred             EEcCCChhccCCEEEEEEEEEEeCCCCeEEE----------------------------EeCCCceEEEeCCCCCCCEEE
Confidence            99954  3558899999999997643 1111                            112467899999999999999


Q ss_pred             EEEEEeecCCCCCCCceeEeecC
Q psy535          438 FQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       438 ~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      |+|+|.|..| |++|..+.|+|.
T Consensus       268 ~~V~A~n~~G-g~~s~~~~~~T~  289 (290)
T 3l5i_A          268 VRMAAYTDEG-GKDGPEFTFTTP  289 (290)
T ss_dssp             EEEEEEETTE-EEECCCEEEECC
T ss_pred             EEEEEEeCCC-CCCCCceEeecC
Confidence            9999999999 899999999985

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.89  E-value=1.8e-22  Score=166.18  Aligned_cols=177  Identities=11%  Similarity=0.182  Sum_probs=124.3

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee-cC--eEEEeecCCCCCeEEEEEEEc
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NG--SLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~--~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      |.|. .+....+.+|+.+.|.|.+.+..+.+.|+|++||.++......++.... ++  +|.|.++..+|+|.|+|.|.|
T Consensus         4 p~~~-~~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N   82 (207)
T 3rbs_A            4 PFTK-SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD   82 (207)
T ss_dssp             --CC-EEEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred             Ceee-cCCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence            4443 3445678889999999999764334489999999999753333333211 12  599999999999999999998


Q ss_pred             CCCCcceeeEEEEE--------------e-----eCCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCCeeEEEcCC
Q psy535          134 AHGTQGSSGQMEVL--------------V-----RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKPTITWQRRD  193 (460)
Q Consensus       134 ~~g~~~~~~~~~v~--------------v-----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~~~~W~~~~  193 (460)
                        |.......+.+.              +     ..+|.+...+ . ..+..|+.+.|.|.+   .|. |.|.+.|++++
T Consensus        83 --g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~-~~v~~g~~v~l~C~v---~g~~P~p~i~W~k~g  155 (207)
T 3rbs_A           83 --GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-S-WEVTGECNVLLKCKV---ANIKKETHIVWYKDE  155 (207)
T ss_dssp             --TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-E-EEEETTTEEEEEEEE---ESCCTTCEEEEEETT
T ss_pred             --CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-C-cEEcCCCcEEEEEEE---eCCCCCCEEEEEECC
Confidence              433222222110              0     0256555443 2 367889999999998   677 99999999965


Q ss_pred             CccCCcccEEEec--ceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          194 GVALPKNRVKIVG--GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       194 ~~~~~~~~~~~~~--~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      ..+....++....  ..|.|.++...|+|.|+|.|.|..|....+..|..
T Consensus       156 ~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          156 REISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             EEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            5443333332222  36999999999999999999999999888877754

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=99.89  E-value=3.3e-23  Score=199.96  Aligned_cols=270  Identities=21%  Similarity=0.333  Sum_probs=182.6

Q ss_pred             CCCcccccCCCCeEEEEeeeeccC----CCCCCeeEEEcCCCccCCcccEEEe---cceEEEccccceeceEEEEEEecc
Q psy535          157 KPEAMYQRKVGESVDMHCEAQEAE----GTQKPTITWQRRDGVALPKNRVKIV---GGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       157 ~~~~~~~~~~g~~~~l~C~~~~~~----~~p~~~~~W~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      .|... .+..|++++|.|.+..+.    +.+.+.+.|+++ +..+........   ...|.|.++...+. .|.|.+...
T Consensus         9 ~p~~~-~v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~-~~~i~~~~~~~~~~~~~~l~i~~~~~~~~-~y~C~~~~~   85 (589)
T 3l5h_A            9 SPESP-VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTN-HFTIPKEQYTIINRTASSVTFTDIASLNI-QLTCNILTF   85 (589)
T ss_dssp             SCSCC-CCCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCS-SSBSCGGGCBCCSSSCCBCCCCCCCSSCC-CCCCC-CCT
T ss_pred             ecCCC-EEeCCCCEEEEEEEeCccCccccccccceEEEeC-CEECChHHccccCCcEeEEEEecCCCcce-eeEEecccC
Confidence            45554 678999999999984221    567789999985 455544433322   33688888888765 477887632


Q ss_pred             c--ceeeeeeEEEEecCCCCCCCceeeee-ecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEE
Q psy535          230 V--ATIVQAAQLVVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI  306 (460)
Q Consensus       230 ~--g~~~~~~~l~v~~~~p~~p~~~~~~~-~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  306 (460)
                      .  ........|.+. .+|.+|.++.+.. ....++++|.++...+.  ...|.+.++.... .+............+.+
T Consensus        86 ~~~~~~~~~~~l~v~-~pP~~P~nl~c~~~~~~~~~~~W~~~~~~~~--~~~y~l~~~~~~~-~~~~c~~~~~~~~~c~~  161 (589)
T 3l5h_A           86 GQLEQNVYGITIISG-LPPEKPKNLSCIVNEGKKMRCEWDGGRETHL--ETNFTLKSEWATH-KFADCKAKRDTPTSCTV  161 (589)
T ss_dssp             TCC-CCCCCCCCCC--CCCCCCEEEEEEEETTSCEEEEEECCSCCSS--CEEEEECCBCSSS-BCCCEECBTTBSSCCBC
T ss_pred             CCcccEEEeEEEecc-CCCCCCEeeEEEECCCceEEEEECCCCcCCc--CceEEEEEEEcCC-CcccCCCCCCCcEEEEE
Confidence            1  112233344443 4788888887643 45689999998765433  3688888765442 22222222223455666


Q ss_pred             c-cCccCccEEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEe--ec-ceEEEEecCCCCCCccceEEEEEEEE
Q psy535          307 N-RLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTE--VN-NGFVISWQPPLERASLIQYYLIKYRT  381 (460)
Q Consensus       307 ~-~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~--~~-~~v~l~W~~~~~~~~~i~~y~i~~~~  381 (460)
                      . ++.+...|.|+|.|.|..|.+. +..+.+.... ..|.||.++.+..  .. +++.|+|++|...++++.+|+|+|+.
T Consensus       162 ~~~l~~~~~Y~~~v~a~n~~G~~~-s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~~~~~~~Y~v~~~~  240 (589)
T 3l5h_A          162 DYSTVYFVNIEVWVEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRT  240 (589)
T ss_dssp             CSCCCSSSCEEECEEEEESSCCBC-CCCEEECGGGSEECCCCCSCEEECTTTCTTCEEEECCCCGGGGTSCEEEEEEEEE
T ss_pred             CCCCchheeEEEEEEEEeCCCCcc-cccEEEccccEEEcCCCceEEEEecCCCCCeEEEEeCCCCCCCeeeEEEEEEECC
Confidence            6 7889999999999999999863 4556665443 2589999999853  33 58999999998777889999999998


Q ss_pred             cCCeeeeccccCCCCcccccccceecCceeeeeecc--CCCCcceEEECCCCcCceEEEEEEEeecCCCCCC---CceeE
Q psy535          382 DGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV--TPPGSTQITINRLTPATTYEFQVVGKNELGDGML---SNIVV  456 (460)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~---s~~~~  456 (460)
                      .+.                         ..|..+..  .......+.+.+|.|++.|.|+|+|.|..|.|.+   |..+.
T Consensus       241 ~~~-------------------------~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~  295 (589)
T 3l5h_A          241 KDA-------------------------STWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEAS  295 (589)
T ss_dssp             TTC-------------------------SCCBCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBC
T ss_pred             CCC-------------------------CCcEEEccccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccc
Confidence            642                         11222211  1235678999999999999999999999998766   55555


Q ss_pred             eec
Q psy535          457 VKT  459 (460)
Q Consensus       457 ~~T  459 (460)
                      ++|
T Consensus       296 ~~T  298 (589)
T 3l5h_A          296 GIT  298 (589)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            555

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.88  E-value=1.6e-21  Score=162.34  Aligned_cols=188  Identities=24%  Similarity=0.318  Sum_probs=140.0

Q ss_pred             CCCCCCCceeeeee-cceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccC-ccCccEEEEEEE
Q psy535          244 TQPHAPYNITGVAT-EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRL-TPATTYEFQVVG  321 (460)
Q Consensus       244 ~~p~~p~~~~~~~~-~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~~~~~~~~~~a  321 (460)
                      .+|.+|.++.+... ...+.|+|.++...+..  ..|.+.++..+...+... ........+.|.+| .+.+.|.|+|.|
T Consensus         6 ~pP~~P~~l~~~~~~~~sv~l~W~~p~~~~~~--~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~i~~L~~~~t~Y~~~V~A   82 (215)
T 1bqu_A            6 LPPEKPKNLSCIVNEGKKMRCEWDGGRETHLE--TNFTLKSEWATHKFADCK-AKRDTPTSCTVDYSTVYFVNIEVWVEA   82 (215)
T ss_dssp             CCCCCCEEEEEEEETTSCCEEEEECCSCCSSC--CEEEEEEEETTEECCCEE-CCSSCTTEEECSSCCCTTSCEEEEEEE
T ss_pred             CCCCCCEeeEeEECCCCcEEEEcCCCCCCCCC--ceEEEEEEEcCCCccccc-cccCCcceEEEcCCccccccEEEEEEE
Confidence            47888888876544 37899999988766543  589999876543222211 22235578999999 899999999999


Q ss_pred             EcCCCCCCCCCcEEEEccC-CCCCCCcceEEEee--c-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCc
Q psy535          322 KNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEV--N-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEE  397 (460)
Q Consensus       322 ~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~--~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~  397 (460)
                      .|..|.+. +..+.+.+.. ..|.+|.++.+...  + +++.|+|++|...++.+.+|+|+|+..+.             
T Consensus        83 ~n~~G~~~-s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~y~~~~~-------------  148 (215)
T 1bqu_A           83 ENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDA-------------  148 (215)
T ss_dssp             EETTEEEE-CCCEEECGGGSEECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEEEEEETTC-------------
T ss_pred             EecccCcc-CCcEEecccccCcCCCCCceEEEEecCCCceEEEEEeCCCCCCcceEEEEEEEccCCC-------------
Confidence            99999875 4455554433 35889999998764  3 69999999998777889999999997542             


Q ss_pred             ccccccceecCceeeeeecc--CCCCcceEEECCCCcCceEEEEEEEeecCCCCC---CCceeEeecC
Q psy535          398 NSYLGEYREQGNKDWLPIPV--TPPGSTQITINRLTPATTYEFQVVGKNELGDGM---LSNIVVVKTK  460 (460)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~---~s~~~~~~T~  460 (460)
                                  ..|..+..  .....+.+.|.+|.|++.|.|+|+|.|..|.|.   +|+.+.++|+
T Consensus       149 ------------~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~  204 (215)
T 1bqu_A          149 ------------STWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY  204 (215)
T ss_dssp             ------------SSCEECCGGGGCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEEC
T ss_pred             ------------CCceEeccccccCccceEEeCCCCCCCEEEEEEEEccCCCCCccCCCCCccccccc
Confidence                        12322221  134678999999999999999999999999865   5666777774

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.88  E-value=3.1e-22  Score=185.99  Aligned_cols=212  Identities=13%  Similarity=0.165  Sum_probs=141.9

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec--CCeeEEcceeeeecceeeEEEEEEEecCCC-CCeEEEeeC
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF--PAKVTFTPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKD   94 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~   94 (460)
                      +.|.|.+++.+|+|.|+|.|.|..+..   .+.+.+..  ++.....|....+.+|++++|.|.+.+.|. .+.+.|+|+
T Consensus       181 ~~L~i~~~~~~d~G~Y~C~a~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~  257 (438)
T 1qgc_4          181 STLTLTKDEYERHNSYTCEATHKTSTS---PIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQ  257 (438)
T ss_dssp             EEEEEEHHHHHTCCEEEEEEEETTCSS---CEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEEEeCcccCCCCeEEEEEEecccCC---ceecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEEC
Confidence            379999999999999999999987753   23334432  222334456677889999999999999872 347999996


Q ss_pred             --CeecCc---------------cccccEEEeec-----CeEEEeecCCCCCeEEEEEEEcCCCC---cceeeEEEEEee
Q psy535           95 --KRLLEP---------------YQTKDIVVMQN-----GSLLFTRVNQNHQGRYTCTPYNAHGT---QGSSGQMEVLVR  149 (460)
Q Consensus        95 --~~~~~~---------------~~~~~~~~~~~-----~~l~i~~~~~~d~G~y~C~~~~~~g~---~~~~~~~~v~v~  149 (460)
                        +..+..               ....++....+     ..|.|.+++.+|+|.|+|.|.|..+.   ........+.|.
T Consensus       258 ~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~  337 (438)
T 1qgc_4          258 TPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVS  337 (438)
T ss_dssp             ETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEEC
T ss_pred             CCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEe
Confidence              443210               11234444432     27999999999999999999984431   011122334444


Q ss_pred             ----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCC-eeEEEcCCCccCCc---ccEE-----EecceEEEcccc
Q psy535          150 ----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKP-TITWQRRDGVALPK---NRVK-----IVGGNITIEGLR  215 (460)
Q Consensus       150 ----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~-~~~W~~~~~~~~~~---~~~~-----~~~~~l~i~~~~  215 (460)
                          .+|.+...+... .+..|+.++|.|.+   .+. |.+ .+.|++++. .+..   ....     ...+.|.|.++.
T Consensus       338 ~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~---~g~~P~~~~v~W~~~g~-~~~~~~~~~~~~~g~~~~~s~L~i~~~~  412 (438)
T 1qgc_4          338 AAKTTPPSVYPLAPGS-AAAAASMVTLGCLV---KGYFPEPVTVTWNSGSL-SSGVHTFPAVLQSDLYTLSSSVTVPSST  412 (438)
T ss_dssp             SSCCBCCEEEEECCCG-GGCCSSEEEEEEEE---ESCBSSCCEEEEGGGTC-CSSEEECCCEEETTEEEEEEEEEEEEEH
T ss_pred             cCCCCCCeEEEcCccc-ccccCCcEEEEEEe---ccccCCCcEEEEecCCC-CCceeecCccccCCcEEEEEEEEEehhh
Confidence                345444333333 46789999999999   565 877 999998544 3321   1111     112258888888


Q ss_pred             ceeceEEEEEEecccceeeeeeE
Q psy535          216 RVDFGYYECVVSNEVATIVQAAQ  238 (460)
Q Consensus       216 ~~~~g~y~C~a~n~~g~~~~~~~  238 (460)
                      ..| |.|+|.|.|..|.......
T Consensus       413 ~~d-g~Y~C~a~n~~g~~~~~~~  434 (438)
T 1qgc_4          413 WPS-ETVTCNVAHPASSTKVDKK  434 (438)
T ss_dssp             HHH-SCCEEEEEEGGGTEEEEEE
T ss_pred             cCC-ceEEEEEEeCCCCcceeee
Confidence            888 9999999999987654443

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.88  E-value=2.5e-21  Score=164.53  Aligned_cols=179  Identities=23%  Similarity=0.364  Sum_probs=130.0

Q ss_pred             ceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccc--cEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTK--DIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS  140 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~  140 (460)
                      +....+.+|+++.|.|.+.+.|.+ .+.|++++..+......  .........|.|.+++.+|+|.|+|.+.+..+....
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~  100 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ  100 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCC-EEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCc-eeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEE
Confidence            346788899999999999998766 89999999988643221  233344568999999999999999999998877655


Q ss_pred             eeEEEEEeeC--CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEc----CCCccCCccc--EEE--------
Q psy535          141 SGQMEVLVRK--PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR----RDGVALPKNR--VKI--------  204 (460)
Q Consensus       141 ~~~~~v~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~----~~~~~~~~~~--~~~--------  204 (460)
                      ...+.|....  +|.+...+.....+..|+.+.|.|.+   .+.|.+.+.|++    ++........  ...        
T Consensus       101 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~---~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  177 (241)
T 3grw_A          101 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV---YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISES  177 (241)
T ss_dssp             EEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEE---ECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSB
T ss_pred             EEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEE---ecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeee
Confidence            5444443321  23333332222367889999999999   788999999998    4443322221  110        


Q ss_pred             --ecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCC
Q psy535          205 --VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ  245 (460)
Q Consensus       205 --~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~  245 (460)
                        ....|.|.++...|.|.|+|.|.|..|.....+.|.|..++
T Consensus       178 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p  220 (241)
T 3grw_A          178 VEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR  220 (241)
T ss_dssp             SEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC----
T ss_pred             cCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCC
Confidence              23469999999999999999999999999999988887643

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.88  E-value=1.5e-22  Score=165.88  Aligned_cols=169  Identities=14%  Similarity=0.162  Sum_probs=113.1

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      .+|.+...|.. .+.+|++++|.|.+.+.+.  .+.|+|++..+............++.|.|.+++.+|+|.|+|.+.|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~--~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 2d3v_A            4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ--EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSP   80 (196)
T ss_dssp             CBCEEEEESCS-EEETTCCEEEEEECCTTCC--EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc--EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCC
Confidence            35677777764 7889999999999987654  79999999876431111111123457999999999999999999988


Q ss_pred             CCCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccE-EE-----e
Q psy535          135 HGTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV-KI-----V  205 (460)
Q Consensus       135 ~g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~-~~-----~  205 (460)
                      .|....+..+.|.|..   +|.+...+.  ..+..|+.++|.|.+   .+.| +.+.|++++......... ..     .
T Consensus        81 ~g~~~~s~~~~l~V~~~~~~p~i~~~~~--~~v~~G~~v~L~C~~---~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~  154 (196)
T 2d3v_A           81 AGWSEPSDPLELVVTGFYNKPTLSALPS--PVVTSGENVTLQCGS---RLRF-DRFILTEEGDHKLSWTLDSQLTPSGQF  154 (196)
T ss_dssp             TEECBCCCCEEEEEECSSCCCEEEC-------------CEEEEEE---SSCC-SEEEEEEC---CCEEEEECEECTTSCE
T ss_pred             CCcCCcCccEEEEecCCCCCCeEEccCC--ccccCCCcEEEEEEc---CCCC-CEEEEEccCCcccccccccccccCCCc
Confidence            7655445566666665   455554443  257899999999998   6777 899999955433221111 11     1


Q ss_pred             cceEEEccccceeceEEEEEEecccce
Q psy535          206 GGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       206 ~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      ...|.|.++...|+|.|+|.|.|..+.
T Consensus       155 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          155 QALFPVGPVTPSHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             EEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred             eeEEEeeecCcccCeeEEEEEEccCCC
Confidence            257999999999999999999997653

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.88  E-value=3e-21  Score=160.78  Aligned_cols=185  Identities=22%  Similarity=0.287  Sum_probs=145.9

Q ss_pred             CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc--ccEEEe----cceEEEccccceeceEEE
Q psy535          150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK--NRVKIV----GGNITIEGLRRVDFGYYE  223 (460)
Q Consensus       150 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~--~~~~~~----~~~l~i~~~~~~~~g~y~  223 (460)
                      .+|.+ ..+... .+..|+.+.|.|.+   .+.|.|.+.|++++..+...  .++.+.    ...|.|.++...|.|.|+
T Consensus        18 ~~P~~-~~p~~~-~~~~G~~v~l~C~~---~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   92 (215)
T 3mtr_A           18 YAPKL-QGPVAV-YTWEGNQVNITCEV---FAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYN   92 (215)
T ss_dssp             EEEEE-ECCSEE-EECTTCCEEEEEEE---EEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEE
T ss_pred             cCCcc-cCCceE-EEECCCCEEEEEEE---eecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEE
Confidence            35555 355554 68899999999999   78899999999955433322  234443    357999999999999999


Q ss_pred             EEEecccceeeeeeEEEEecCCCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccC---CC
Q psy535          224 CVVSNEVATIVQAAQLVVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP---PG  300 (460)
Q Consensus       224 C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  300 (460)
                      |.|.|..|.......+.+.. +|.+|..+........+.|.|.++...+..++..|.+.|+..+...|.......   ..
T Consensus        93 C~a~n~~g~~~~~~~l~v~~-~P~~p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~  171 (215)
T 3mtr_A           93 CTAVNRIGQESLEFILVQAD-TPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM  171 (215)
T ss_dssp             EEEECSSCEEEEEEEEEECC-CCCCCEEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHH
T ss_pred             EEEEECCCceEEEEEEEECC-CCCCCcceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccc
Confidence            99999999998888888875 577777766666778999999977666666668999999988877777553211   12


Q ss_pred             CceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccC
Q psy535          301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG  340 (460)
Q Consensus       301 ~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~  340 (460)
                      ...+.|.+|.+++.|.|+|.|.|..|.+.+|..+.+.+.+
T Consensus       172 ~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p  211 (215)
T 3mtr_A          172 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP  211 (215)
T ss_dssp             HTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred             cccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence            2689999999999999999999999999999999988753

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.88  E-value=3.8e-22  Score=165.70  Aligned_cols=180  Identities=15%  Similarity=0.180  Sum_probs=125.2

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccE-EEeecC--eEEEeecCCCCCeEEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDI-VVMQNG--SLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~--~l~i~~~~~~d~G~y~C~~  131 (460)
                      .+|.+...|. ..+.+|++++|.|.+.+ +. +.+.|+|+|..+.... ... .....+  .|.|.+++.+|+|.|+|.+
T Consensus         8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~-~~~~W~k~g~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   83 (218)
T 1uct_A            8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EA-YLTQLMIIKNSTYREI-GRRLKFWNETDPEFVIDHMDANKAGRYQCQY   83 (218)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEEECCCT-TC-SEEEEEEEETTEEEEC-SEECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCCEEEecCC-CccCCCCCEEEEEEcCC-CC-CEEEEEECCCcccccc-cccCCCCcceeeEEEEcccccccCEEEEEEE
Confidence            3566777776 57889999999999976 43 4799999987654211 111 112344  8999999999999999999


Q ss_pred             EcCCCCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecce
Q psy535          132 YNAHGTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN  208 (460)
Q Consensus       132 ~~~~g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~  208 (460)
                      .|..+....+..+.|.|..   +|.+...+..  .+..|+.++|.|..   .+.+.+.+.|++++.............+.
T Consensus        84 ~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~--~v~~G~~v~L~C~~---~~~~~~~~~W~k~g~~~~~~~~~~~~~~~  158 (218)
T 1uct_A           84 RIGHYRFRYSDTLELVVTGLYGKPFLSADRGL--VLMPGENISLTCSS---AHIPFDRFSLAKEGELSLPQHQSGEHPAN  158 (218)
T ss_dssp             EETTTEEEECCCEEEEEECSSCCCEEEESSCS--EECTTCCCEEEEEC---SSSCCSEEEEEETTCSSCCSEEECSSSEE
T ss_pred             EcCCCceeecCCEEEEEcCcccCCEEEeCCCC--ccCCCCCEEEEEeC---CCCCCCEEEEEECCCcccccccCCCccCE
Confidence            9977644455566777654   5666555532  57899999999965   56677899999955433221111123567


Q ss_pred             EEEccccceeceEEEEEEecccc-----eeeeeeEEEEec
Q psy535          209 ITIEGLRRVDFGYYECVVSNEVA-----TIVQAAQLVVEG  243 (460)
Q Consensus       209 l~i~~~~~~~~g~y~C~a~n~~g-----~~~~~~~l~v~~  243 (460)
                      |.|.++...|+|.|+|.|.|...     ..+..+.|.|.+
T Consensus       159 L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          159 FSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD  198 (218)
T ss_dssp             EECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred             EEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence            99999999999999999998532     223445666654

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.88  E-value=7.4e-20  Score=160.77  Aligned_cols=273  Identities=15%  Similarity=0.199  Sum_probs=169.3

Q ss_pred             EcceeeeecceeeEEEEEEEecC------CCCCeEEEeeCCeecCccccccEEEeec--CeEEEeecCCCCCeEEEEEEE
Q psy535           61 FTPTVQYLPFRLQGVVQCHIKAN------PTFQYVTWTKDKRLLEPYQTKDIVVMQN--GSLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~~~~~------~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~  132 (460)
                      +.|....+..|++++|.|.+.+.      .+.+.|.|+++|..+...   ++.+...  +.|.|.++...| |.|+|.|.
T Consensus         9 i~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~---~~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~   84 (303)
T 1i1r_A            9 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE---QYTIINRTASSVTFTDIASLN-IQLTCNIL   84 (303)
T ss_dssp             EESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG---GCEEEETTEEEEEECSCCCSE-EEEEEEEE
T ss_pred             EccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh---heeeeCCcEEEEEEcCcCCCc-eEEEEecc
Confidence            46777888999999999999863      233479999999988532   3333333  369999999885 99999998


Q ss_pred             cCCCCcceeeEEEEEeeCCCceeeCCCccc-ccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCCccCCcccEEEecceEE
Q psy535          133 NAHGTQGSSGQMEVLVRKPPAFTIKPEAMY-QRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDGVALPKNRVKIVGGNIT  210 (460)
Q Consensus       133 ~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~l~  210 (460)
                      +..+.......+.|.+..+|..   |.... .......+.|.+....+.+.+ ...+.+...++..............+.
T Consensus        85 ~~g~~~~~~~~~~l~v~~~P~~---P~~l~~~~~~~~~v~l~W~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~  161 (303)
T 1i1r_A           85 TFGQLEQNVYGITIISGLPPEK---PKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCT  161 (303)
T ss_dssp             ETTTEEEEEEEEEEEEECCCCC---CEEEEEEEETTSCCEEEEECCSCCSSCCEEEEEEEETTEECCCEECCSSCTTEEE
T ss_pred             cCCCcceEEEEEEEeccCCCCC---CeeeEEEECCCCcEEEEccCCCCCCCCcCEEEEEEecCCCCccCCCcCCCceEEE
Confidence            7422222233455566666532   11110 111113333333321111111 012222211110000000000123577


Q ss_pred             Eccc-cceeceEEEEEEecccceeeee-eEEEE-ecCCCCCCCceeeee---ecceEEEEeecCCCCCCCceeeEEEEEE
Q psy535          211 IEGL-RRVDFGYYECVVSNEVATIVQA-AQLVV-EGTQPHAPYNITGVA---TEFSVTLEWLPGYSGGPDLKQNYVIWYR  284 (460)
Q Consensus       211 i~~~-~~~~~g~y~C~a~n~~g~~~~~-~~l~v-~~~~p~~p~~~~~~~---~~~~~~l~w~~~~~~~~~~~~~~~~~~~  284 (460)
                      |.++ .....+.|+|.|.|..|..... ..+.. ...+|.+|..+....   ...++.|+|.++...+. ++.+|.+.|+
T Consensus       162 i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~p~~~~~-~i~~Y~v~y~  240 (303)
T 1i1r_A          162 VDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV-IILKYNIQYR  240 (303)
T ss_dssp             CSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEEEECCSSSSSCEEEEEECCGGGGT-SCEEEEEEEE
T ss_pred             ECCcCcccccEEEEEEEEcCCCCcccCCEEECHHHeEecCCCcceEEEEecCCCCEEEEEECCCCCCCc-ccEEEEEEEE
Confidence            8888 7888899999999999986532 22211 113577787766532   45799999998766554 3479999999


Q ss_pred             ecCCCCeeeeecc--CCCCceEEEccCccCccEEEEEEEEcCCCCCCC---CCcEEEEccCC
Q psy535          285 EQGNKDWLPIPVT--PPGSTQITINRLTPATTYEFQVVGKNELGDGML---SNIVVVKTKGP  341 (460)
Q Consensus       285 ~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~---s~~~~~~~~~~  341 (460)
                      ..+...|..+...  ......+.|.+|.+++.|.|++.|.|..|.|.+   |..+.++|.+.
T Consensus       241 ~~~~~~w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~~~T~e~  302 (303)
T 1i1r_A          241 TKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED  302 (303)
T ss_dssp             ETTCSSCEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEEEECCCC
T ss_pred             eCCCCCceEEccccCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCccceeCCcC
Confidence            9877778766432  335678999999999999999999999887654   56677776543

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.88  E-value=3.6e-22  Score=163.29  Aligned_cols=163  Identities=18%  Similarity=0.170  Sum_probs=115.9

Q ss_pred             eeecceeeEEEEEE---EecCCCCCeEEEeeCCeecCcc---------------ccccEEEee---cCeEEEeecCCCCC
Q psy535           66 QYLPFRLQGVVQCH---IKANPTFQYVTWTKDKRLLEPY---------------QTKDIVVMQ---NGSLLFTRVNQNHQ  124 (460)
Q Consensus        66 ~~~~~g~~~~l~C~---~~~~~~~~~v~W~~~~~~~~~~---------------~~~~~~~~~---~~~l~i~~~~~~d~  124 (460)
                      ..+.+|++++|.|.   +.+.|.+ .|+|+|+|..+...               ...++....   ...|.|.+++.+|+
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~-~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEI-EVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTS-EEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCc-EEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            45778999999996   4556665 79999987543210               011111111   23699999999999


Q ss_pred             eEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC----cc
Q psy535          125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP----KN  200 (460)
Q Consensus       125 G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~----~~  200 (460)
                      |.|+|.|.|..|...  ..+.|.|..||.+...+... .+..|+.++|.|.+   .|.|.|.+.|+++++....    ..
T Consensus        82 G~Y~C~a~n~~g~~~--~~~~l~V~~p~~~~~~~~~~-~v~~g~~~~l~C~~---~G~P~P~v~W~~~~~~~~~~~~~~~  155 (203)
T 4fa8_A           82 GNYLCRMKLGETEVT--KQEHLSVVKPLTLSVHSERS-QFPDFSVLTVTCTV---NAFPHPHVQWLMPEGVEPAPTAANG  155 (203)
T ss_dssp             EEEEEEEEETTEEEE--EEEEEEEEEEEEEEEEEEEC-CSSCSCCEEEEEEE---EEESCCEEEECCC------------
T ss_pred             eEEEEEEEcCCCcEE--EEEEEEecCCceeeecceeE-EEcCCCEEEEEEEc---CCCCCCEEEEEECCeeecCcccccc
Confidence            999999999877654  45566666788877776665 68899999999999   7999999999986654432    22


Q ss_pred             cEEEe-cceE---EEccccceeceEEEEEEecccceeee
Q psy535          201 RVKIV-GGNI---TIEGLRRVDFGYYECVVSNEVATIVQ  235 (460)
Q Consensus       201 ~~~~~-~~~l---~i~~~~~~~~g~y~C~a~n~~g~~~~  235 (460)
                      ++... ++++   .+.++...|.|.|+|.|.|..|+...
T Consensus       156 r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          156 GVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             eEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            33332 4444   44688999999999999999998764

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.88  E-value=1e-22  Score=180.98  Aligned_cols=204  Identities=13%  Similarity=0.161  Sum_probs=133.0

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE---ecCCee-EEcceeeeecceeeEEEEEEEecCCCCC---eEEE
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV---EFPAKV-TFTPTVQYLPFRLQGVVQCHIKANPTFQ---YVTW   91 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v---~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~---~v~W   91 (460)
                      .|.|.++..+|+|.|+|.|.|..+.. ...+.+.+   ..+|.+ ...|....+.+|++++|.|.+.+.++.+   .|+|
T Consensus        73 ~l~i~~~~~~d~g~Y~C~a~n~~~~~-~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W  151 (323)
T 2wqr_A           73 ELTLSQKHWLSDRTYTCQVTYQGHTF-EDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTW  151 (323)
T ss_dssp             EEEEEHHHHHTTCCEEEEEEETTEEE-EEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEE
T ss_pred             EEEEcHHHcCCCCcEEEEEEeCCCCc-ceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEE
Confidence            57788888889999999999976542 22221111   112333 3445555577899999999998865433   7999


Q ss_pred             eeCC-eecCccc-------cccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE----eeCCCceeeCCC
Q psy535           92 TKDK-RLLEPYQ-------TKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL----VRKPPAFTIKPE  159 (460)
Q Consensus        92 ~~~~-~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~----v~~~p~~~~~~~  159 (460)
                      ++++ ..+....       ...+  ...+.|.|.++..+|+|.|+|.|.|..+....  .+.|.    +..+|.+.+.+.
T Consensus       152 ~k~~g~~~~~~~~~~~~~~~g~~--~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~--~~~v~~~~~~~~~P~v~~~~~  227 (323)
T 2wqr_A          152 SRASGKPVNHSTRKEEKQRNGTL--TVTSTLPVGTRDWIEGETYQCRVTHPHLPRAL--MRSTTKTSGPRAAPEVYAFAT  227 (323)
T ss_dssp             EETTCCCCCCCCCEEEECTTSCE--EEEEEEECCHHHHHTTCCEEEEEECTTSSSCE--EEEECCCCSCCBCCEEEEEEC
T ss_pred             EECCCcccccccCCCccCCCCCE--EEEEEEEECHHHccCCCCEEEEEECCCCCCCe--eeEEEccCCCCCCCEEEEeCC
Confidence            9965 4432110       0111  12346999999999999999999987643322  33332    235676655433


Q ss_pred             cccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcCCCccCCcccEEE------------ecceEEEccccceeceEEEEE
Q psy535          160 AMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRRDGVALPKNRVKI------------VGGNITIEGLRRVDFGYYECV  225 (460)
Q Consensus       160 ~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~~~~~~~~~~~~~------------~~~~l~i~~~~~~~~g~y~C~  225 (460)
                      .. ....|+.++|.|.+   .+ .|.+ .+.|+++ +..+.......            ..+.|.|..+...|.|.|+|.
T Consensus       228 ~~-~~~~g~~~~l~C~~---~g~~p~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~  302 (323)
T 2wqr_A          228 PE-WPGSRDKRTLACLI---QNFMPEDISVQWLHN-EVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICR  302 (323)
T ss_dssp             CC-CTTCTTEEEEEEEE---EEEBSSCCEEEEEET-TEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEE
T ss_pred             Ch-HHhcCCcEEEEEEe---eeeeCCCcEEEEEEC-CEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEE
Confidence            32 12339999999998   45 4443 8999994 44443332211            123588888899999999999


Q ss_pred             Eecccce
Q psy535          226 VSNEVAT  232 (460)
Q Consensus       226 a~n~~g~  232 (460)
                      |.|..+.
T Consensus       303 a~n~~~~  309 (323)
T 2wqr_A          303 AVHEAAS  309 (323)
T ss_dssp             EECTTST
T ss_pred             EEeCCCC
Confidence            9998765

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.88  E-value=4.3e-21  Score=159.58  Aligned_cols=167  Identities=13%  Similarity=0.195  Sum_probs=125.0

Q ss_pred             ceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535           70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV  146 (460)
Q Consensus        70 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v  146 (460)
                      .++.+.|.|.+.+.++.+.++|+|+|..+...  .++.....+   .|.|.++..+|+|.|+|.+.|..+...  ..+.|
T Consensus        16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~--~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~--~~~~l   91 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS--DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQ--KTVDL   91 (212)
T ss_dssp             CSSEEEEEEEBSSCCSSCEEEEEETTEECCCC--SSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEE--EEEEE
T ss_pred             cCceEEEEEEEeccCCCceEEEEECCEEccCC--CeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceE--EEEEE
Confidence            46678999999887655689999999998743  333333332   499999999999999999999776643  44555


Q ss_pred             EeeC--------------------CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEec
Q psy535          147 LVRK--------------------PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG  206 (460)
Q Consensus       147 ~v~~--------------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  206 (460)
                      .+..                    .|.+.........+..|+.+.|.|.+   .+.|.|.+.|++++.......+.....
T Consensus        92 ~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~  168 (212)
T 2r15_A           92 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV---WGDPPPEVSWLKNEKALAQTDHCNLKF  168 (212)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEE---ECSSCCEEEEEETTEEECCCSSEEEEE
T ss_pred             EEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEE---cCCCCceEEEEECCeECccCCCEEEEE
Confidence            4431                    23333332222367899999999999   789999999999655444444554443


Q ss_pred             c-----eEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535          207 G-----NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       207 ~-----~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      .     .|.|.++...|.|.|+|.|.|..|.......|.|..
T Consensus       169 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  210 (212)
T 2r15_A          169 EAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  210 (212)
T ss_dssp             ETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence            2     799999999999999999999999988888887763

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.88  E-value=1e-21  Score=158.97  Aligned_cols=159  Identities=16%  Similarity=0.225  Sum_probs=119.9

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      .+|.+...|.. .+.+|++++|.|.+.+ +. +.+.|+|+|...         ...++.|.|.+++.+|+|.|+|.+.|.
T Consensus         7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~-~~~~W~k~g~~~---------~~~~~~L~i~~v~~~D~G~Y~C~a~n~   74 (184)
T 2gi7_A            7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GV-DLYRLEKLSSSR---------YQDQAVLFIPAMKRSLAGRYRCSYQNG   74 (184)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECST-TC-SEEEEEETTTCC---------EESSSEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCeEEeCCCc-cccCCCcEEEEEeCCC-CC-CEEEEEECCccc---------cCcccEEEECcCChhhCceEEEEEEcC
Confidence            46677777764 7889999999999877 44 479999998751         234568999999999999999999998


Q ss_pred             CCCcceeeEEEEEee---CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEE
Q psy535          135 HGTQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITI  211 (460)
Q Consensus       135 ~g~~~~~~~~~v~v~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i  211 (460)
                      .|....+..+.|.|.   .+|.+...+. . .+..|+.++|.|.+   .+. .+.+.|++++...............|.|
T Consensus        75 ~g~~~~s~~~~l~V~~~~~~p~i~~~p~-~-~v~~G~~v~l~C~~---~~~-~~~~~w~k~g~~~~~~~~~~~~~~~L~i  148 (184)
T 2gi7_A           75 SLWSLPSDQLELVATGVFAKPSLSAQPG-P-AVSSGGDVTLQCQT---RYG-FDQFALYKEGDPAPYKNPERWYRASFPI  148 (184)
T ss_dssp             TEEBCCCCCEEEEEESSSCCCEEEEECC-C-SSCCTTCEEEEEEC---SSC-CCEEEEEECCCCTTSCCCCEEEEESSSE
T ss_pred             CCccCCCCCEEEEecCcCCCCEEEeCCC-c-eecCCCcEEEEEEc---CCC-CcEEEEEECCCcCcceecCCCceEEEEE
Confidence            764444555666664   3566666663 2 57799999999997   444 4699999965544332223334567899


Q ss_pred             ccccceeceEEEEEEecccc
Q psy535          212 EGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       212 ~~~~~~~~g~y~C~a~n~~g  231 (460)
                      .++...|.|.|+|.|.|..+
T Consensus       149 ~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          149 ITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             EEETTCCSEEEEEEEECTTS
T ss_pred             ccCCccCCeEEEEEEEeCCC
Confidence            99999999999999999754

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.88  E-value=2.6e-21  Score=163.28  Aligned_cols=190  Identities=24%  Similarity=0.335  Sum_probs=134.4

Q ss_pred             cCCeeEEcc----eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcccccc--EEEeecCeEEEeecCCCCCeEEE
Q psy535           55 FPAKVTFTP----TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD--IVVMQNGSLLFTRVNQNHQGRYT  128 (460)
Q Consensus        55 ~~p~~~~~~----~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~  128 (460)
                      .+|.|...+    ....+.+|+++.|.|.+.+.|.+ .+.|++++..+.......  ........|.|.++..+|+|.|+
T Consensus        14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   92 (231)
T 3ojm_B           14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT   92 (231)
T ss_dssp             EEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCC-EEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred             cCCccccccccCceeEEEccCCCEEEEEecccCCCC-eEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEE
Confidence            355665454    67788899999999999998766 799999999886432221  23334457999999999999999


Q ss_pred             EEEEcCCCCcceeeEEEEEeeC--CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEc----CCCccCCcc--
Q psy535          129 CTPYNAHGTQGSSGQMEVLVRK--PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQR----RDGVALPKN--  200 (460)
Q Consensus       129 C~~~~~~g~~~~~~~~~v~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~----~~~~~~~~~--  200 (460)
                      |.+.|..+.......+.|....  +|.+.........+..|+.+.|.|.+   .+.|.+.+.|++    ++.......  
T Consensus        93 C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~p~v~W~~~~~~~g~~~~~~~~~  169 (231)
T 3ojm_B           93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKV---YSDAQPHIQWIKHVEKNGSKYGPDGLP  169 (231)
T ss_dssp             EEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCE---ECSSCCEEEEEEECCBTTBSBCTTSCB
T ss_pred             EEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEE---ecCCCCEEEEEECCCCCCccccCCCcc
Confidence            9999988776444444443321  22222222222367889999999998   688999999998    332221111  


Q ss_pred             cEEE---------ecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCC
Q psy535          201 RVKI---------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP  249 (460)
Q Consensus       201 ~~~~---------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p  249 (460)
                      ....         ....|.|.++...|.|.|+|.|.|..|.......|.|.. +|.+|
T Consensus       170 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-~p~~p  226 (231)
T 3ojm_B          170 YLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLP-KQQAP  226 (231)
T ss_dssp             CEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC-CC---
T ss_pred             eEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEec-CCCCC
Confidence            1110         124699999999999999999999999998889998875 34444

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.87  E-value=4.4e-21  Score=160.03  Aligned_cols=170  Identities=17%  Similarity=0.271  Sum_probs=132.9

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      ..+.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+...        ..+.|.|.++..+|+|.|+|.+.|.
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~   87 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFV-QYQWFKMNKEIPNG--------NTSELIFNAVHVKDAGFYVCRVNNN   87 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEETTTTSS-EEEEEETTEECTTC--------CSSEEEETTCCGGGCEEEEEEEECT
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeeecCCCCC-EEEEEECCEECCCC--------CCCEEEEccCChhhCeEeEEEEEcC
Confidence            35677888988999999999999999887765 89999999987532        3467999999999999999999998


Q ss_pred             CCCcceeeEEEEEeeCC---------------CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc
Q psy535          135 HGTQGSSGQMEVLVRKP---------------PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK  199 (460)
Q Consensus       135 ~g~~~~~~~~~v~v~~~---------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~  199 (460)
                      .|.. .+..+.|.|..+               |.+...+... .+..|+.+.|.|.+   .+.|.+.+.|++++. .+..
T Consensus        88 ~~~~-~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~v~~G~~v~L~C~~---~g~p~~~v~W~~~~~-~~~~  161 (218)
T 3k0w_A           88 FTFE-FSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQ-KLMPGSTLVLQCVA---VGSPIPHYQWFKNEL-PLTH  161 (218)
T ss_dssp             TCCE-ECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCE-EECTTCCEEEECEE---EBSSCCEEEEEETTE-ECTT
T ss_pred             CCCc-eeeEEEEEEEccCcccccccccccCCCceEEECCCce-eecCCCcEEEEEEe---cccCCCeEEEEECCE-ECCC
Confidence            7654 344455555544               4555566554 67899999999999   688999999999544 3332


Q ss_pred             ccEEEecceEEEccccceeceEEEEEEecccce-eeeeeEEEEec
Q psy535          200 NRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT-IVQAAQLVVEG  243 (460)
Q Consensus       200 ~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~-~~~~~~l~v~~  243 (460)
                      .    ....|.|.++...|.|.|+|.|.|..|. .+..+.|.|..
T Consensus       162 ~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  202 (218)
T 3k0w_A          162 E----TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE  202 (218)
T ss_dssp             C----CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred             C----CCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence            2    2357999999999999999999998887 45566676654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.87  E-value=2.3e-21  Score=161.82  Aligned_cols=183  Identities=21%  Similarity=0.418  Sum_probs=135.3

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcccc-ccEEEeecCeE----EEeecCCCCCeEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQT-KDIVVMQNGSL----LFTRVNQNHQGRYTC  129 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~l----~i~~~~~~d~G~y~C  129 (460)
                      .+|.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+..... .......++.+    .|.++..+|+|.|+|
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   86 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEP-TIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC   86 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSCC-EEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCCC-eEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence            57888888888899999999999999987765 7999999998864321 12222334444    578899999999999


Q ss_pred             EEEcCCCCcc-eeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--------Ccc
Q psy535          130 TPYNAHGTQG-SSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--------PKN  200 (460)
Q Consensus       130 ~~~~~~g~~~-~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--------~~~  200 (460)
                      .+.|..|... ....+.|.+. +|.+...+... .+..|+.+.|.|.+.  .+.|.+.+.|++++....        ...
T Consensus        87 ~~~n~~g~~~~~~~~l~v~~~-~~~~~~~~~~~-~~~~g~~v~l~C~~~--~g~p~~~v~W~~~g~~~~~~~~~~~~~~~  162 (217)
T 2vr9_A           87 VAKNRVGQAVSRHASLQIAVL-RDDFRVEPKDT-RVAKGETALLECGPP--KGIPEPTLIWIKDGVPLDDLKAMSFGASS  162 (217)
T ss_dssp             EEEETTEEEECCCEEEEECEE-CCSCSBCCCCE-EECTTSCEEECCBCC--CEESCCEEEEEETTEEECCCCCC---CCC
T ss_pred             EEecCCCccccccceEEEEEe-CCCcEECCCcc-EEcCCCeEEEEEECC--CCCCCCeEEEEECCcCCCcccccccccCC
Confidence            9999877542 2334444332 45555555554 678999999999873  578899999999554332        122


Q ss_pred             cEEE-ecceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535          201 RVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       201 ~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                      +... .++.|.|.++...|.|.|+|.|.|..|....+..+.+.
T Consensus       163 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          163 RVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             SEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence            3332 35689999999999999999999999998777665554

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.87  E-value=3.1e-21  Score=154.90  Aligned_cols=166  Identities=14%  Similarity=0.182  Sum_probs=124.7

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      +|.+...|....+.+|++++|.|.+.+.|.+..+.|++++..+..         ..+.|.|.++..+|+|.|+|.+.|..
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~---------~~~~L~i~~~~~~d~G~Y~C~~~n~~   77 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS---------QASSYFIDAATVNDSGEYRCQTNLST   77 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES---------SCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC---------CceEEEEeCCCcccCEEEEEEeeCCc
Confidence            466777787778899999999999999876655899999988752         34679999999999999999998754


Q ss_pred             CCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC-CeeEEEcCCCccCCcccEEEecceEEEccc
Q psy535          136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK-PTITWQRRDGVALPKNRVKIVGGNITIEGL  214 (460)
Q Consensus       136 g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~  214 (460)
                      +    +..+.|.|..++.....+. . .+..|+.++|.|.+   .+.++ +.+.|++++. .+.   .......|.|.++
T Consensus        78 ~----s~~~~l~V~~~~~~~~~~~-~-~~~~g~~~~l~C~~---~~~~~~~~~~W~k~g~-~~~---~~~~~~~L~i~~v  144 (175)
T 1fnl_A           78 L----SDPVQLEVHIGWLLLQAPR-W-VFKEEDPIHLRCHS---WKNTALHKVTYLQNGK-DRK---YFHHNSDFHIPKA  144 (175)
T ss_dssp             C----CCCEEEEEECSSEEEECSC-S-EEETTCCEEEEEEE---CTTCCCEEEEEEETTE-EEE---EEEECCCEEESSC
T ss_pred             c----cccEEEEEeCCCceeeCCC-c-eecCCCCEEEEEEc---CCCCCceEEEEEECCe-Ecc---CCCCCCEEEEccc
Confidence            4    3345555555554443333 2 57789999999998   55544 5999999543 331   2234678999999


Q ss_pred             cceeceEEEEEEecccce-eeeeeEEEEec
Q psy535          215 RRVDFGYYECVVSNEVAT-IVQAAQLVVEG  243 (460)
Q Consensus       215 ~~~~~g~y~C~a~n~~g~-~~~~~~l~v~~  243 (460)
                      ...|.|.|+|.|.|..+. .+..+.|.|.+
T Consensus       145 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          145 TLKDSGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence            999999999999997654 45556666653

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.87  E-value=6.2e-22  Score=162.55  Aligned_cols=168  Identities=13%  Similarity=0.208  Sum_probs=118.9

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      .+|.+...|. ..+.+|++++|.|.+.+.+.  .+.|+|+|..+.............+.|.|.++..+|+|.|+|.+.|.
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~--~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (198)
T 1ugn_A            4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ--EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD   80 (198)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECCTTCC--CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCeEeccCC-CcccCCCcEEEEEEecCCCc--EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECC
Confidence            3567777776 47889999999999988764  59999999876421111111234568999999999999999999998


Q ss_pred             C-CCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccE---EE---
Q psy535          135 H-GTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV---KI---  204 (460)
Q Consensus       135 ~-g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~---~~---  204 (460)
                      . |....+..+.|.|..   +|.+...+. . .+..|+.++|.|.+   .+. .+.+.|++++.........   ..   
T Consensus        81 ~~g~~~~s~~~~l~V~~~~~~p~i~~~~~-~-~v~~G~~v~L~C~~---~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~  154 (198)
T 1ugn_A           81 TAGRSESSDPLELVVTGAYIKPTLSAQPS-P-VVNSGGNVTLQCDS---QVA-FDGFILCKEGEDEHPQCLNSQPHARGS  154 (198)
T ss_dssp             TTEECCCCCCEEEEEECSSCCCEEEEESC-S-EEETTCCEEEEEEC---SSC-CSEEEEEEC------CEEEC------C
T ss_pred             CCCcccCCccEEEEEcccccCCccccCCc-c-ccCCCCcEEEEEec---CCC-CcEEEEEECCCccCCccccccccCCCc
Confidence            7 533345566666665   455544443 2 57789999999998   566 7899999965543322111   11   


Q ss_pred             ecceEEEccccceeceEEEEEEecccc
Q psy535          205 VGGNITIEGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       205 ~~~~l~i~~~~~~~~g~y~C~a~n~~g  231 (460)
                      ....|.|.++...|.|.|+|.|.|..+
T Consensus       155 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          155 SRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             CEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             ceeEEEecccCcccCeEEEEEEEeCCC
Confidence            136799999999999999999999865

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.87  E-value=9e-22  Score=161.28  Aligned_cols=167  Identities=13%  Similarity=0.202  Sum_probs=121.1

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      +|.+...|.. .+.+|++++|.|.+.+ +. +.+.|+|++..+.............+.|.|.+++.+|+|.|+|.|.|..
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 3p2t_A            5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EA-REYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV   81 (196)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TC-CEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEccCCC-cCCCCCcEEEEeeCCC-CC-CEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence            4666677766 7889999999999988 44 3799999998775311111111234579999999999999999999988


Q ss_pred             CCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc-----EEEecc
Q psy535          136 GTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR-----VKIVGG  207 (460)
Q Consensus       136 g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~-----~~~~~~  207 (460)
                      |....+..+.|.|..   +|.+...+..  .+..|+.++|.|.+   .+ +.+.+.|++++........     .....+
T Consensus        82 g~~~~s~~~~l~V~~~~~~p~~~~~~~~--~v~~G~~v~L~C~~---~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~  155 (196)
T 3p2t_A           82 GWSQPSDPLELVMTGAYSKPTLSALPSP--LVTSGKSVTLLCQS---RS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQA  155 (196)
T ss_dssp             EEBCCCCCEEEEEECSSCCCEEEEESCS--EECTTCCEEEEEEE---EE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEE
T ss_pred             cccCCCccEEEEecCCCCCCEEEeCCcc--eecCCCeEEEEEec---CC-CCCEEEEEeCCCcccceeecccccccCcce
Confidence            744455566676653   4555555543  56899999999998   44 4568999995543322211     112356


Q ss_pred             eEEEccccceeceEEEEEEecccc
Q psy535          208 NITIEGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       208 ~l~i~~~~~~~~g~y~C~a~n~~g  231 (460)
                      .|.|.++...|+|.|+|.|.|..+
T Consensus       156 ~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          156 EFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEECSCCGGGCEEEEEEEECGGG
T ss_pred             EEEeCCCcccCCCeEEEEEEcCCC
Confidence            799999999999999999999876

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.87  E-value=3.3e-21  Score=160.29  Aligned_cols=184  Identities=26%  Similarity=0.454  Sum_probs=135.8

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcccc---ccEEEeecCeEE-----EeecCCCCCeE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQT---KDIVVMQNGSLL-----FTRVNQNHQGR  126 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~l~-----i~~~~~~d~G~  126 (460)
                      .||.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+.....   .......++.+.     |.++..+|+|.
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   86 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTP-TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCC-EEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcCCCCCC-EEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence            46778888888899999999999999988766 8999999988754221   123333444444     44568999999


Q ss_pred             EEEEEEcCCCCcceeeEEEEEeeC-CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEE
Q psy535          127 YTCTPYNAHGTQGSSGQMEVLVRK-PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKI  204 (460)
Q Consensus       127 y~C~~~~~~g~~~~~~~~~v~v~~-~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~  204 (460)
                      |+|.+.|..|.. .+..+.|.|.. ++.+...+... .+..|+.++|.|.+.  .+.|.+.+.|++++..... ..+...
T Consensus        87 Y~C~~~n~~g~~-~~~~~~l~V~~~~~~~~~~~~~~-~~~~g~~~~l~C~~~--~~~p~~~v~W~~~~~~l~~~~~~~~~  162 (212)
T 2v9r_A           87 YVCVARNYLGEA-VSHDASLEVAILRDDFRQNPSDV-MVAVGEPAVMECQPP--RGHPEPTISWKKDGSPLDDKDERITI  162 (212)
T ss_dssp             EEEEEEETTEEE-ECCCEEEEECEECSSCSBCCCCE-EEETTSCEEEECBCC--CEESCCEEEEEETTEEECTTSTTEEE
T ss_pred             EEEEEECCCCce-eecceEEEEEeccccceeCCCce-EecCCCcEEEEEecC--CCCCCCEEEEEECCccCCCCcceEEc
Confidence            999999987754 22233444433 44444445444 678999999999973  5778999999995543332 345566


Q ss_pred             ecceEEEccccceeceEEEEEEecccceeeee-eEEEEec
Q psy535          205 VGGNITIEGLRRVDFGYYECVVSNEVATIVQA-AQLVVEG  243 (460)
Q Consensus       205 ~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~-~~l~v~~  243 (460)
                      .++.|.|.++...|.|.|+|.|.|..|..... +.|.|..
T Consensus       163 ~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~  202 (212)
T 2v9r_A          163 RGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE  202 (212)
T ss_dssp             ETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             cCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEe
Confidence            77899999999999999999999999986554 6777765

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.87  E-value=6.7e-22  Score=160.71  Aligned_cols=166  Identities=14%  Similarity=0.201  Sum_probs=117.3

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      +|.+...|.. .+.+|++++|.|.+.+.  +..+.|+|+|..+............++.|.|.+++.+|+|.|+|.+.|..
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~--~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   80 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNYG--AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCTT--CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCCC--CCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCC
Confidence            4666667765 78899999999998754  34799999998764211111111234579999999999999999998875


Q ss_pred             CCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEc
Q psy535          136 GTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIE  212 (460)
Q Consensus       136 g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~  212 (460)
                      +....+..+.|.|..   +|.+...+..  .+..|+.++|.|.+   .+ +.+.+.|++++.............+.|.|.
T Consensus        81 ~~~~~s~~~~l~V~~~~~~p~i~~~p~~--~v~~G~~v~L~C~~---~~-~~~~~~w~k~g~~~~~~~~~~~~~~~L~I~  154 (188)
T 1oll_A           81 LWSEPSNLLDLVVTEMYDTPTLSVHPGP--EVISGEKVTFYCRL---DT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLG  154 (188)
T ss_dssp             EECCCCCCEEEEEESCSCCCEEEEESCS--EEETTCEEEEEEEC---SS-SCSEEEEEEESSSCEEEEEECSSEEEEEEE
T ss_pred             CCCCCCCceEEEecccCCCCeEEECCCC--ccccCCEEEEEEEc---CC-CCCEEEEEECCccccccccCCCceeEEEEC
Confidence            544445566666653   5666655532  57899999999997   44 457899999554332211111134579999


Q ss_pred             cccceeceEEEEEEeccc
Q psy535          213 GLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       213 ~~~~~~~g~y~C~a~n~~  230 (460)
                      ++...|+|.|+|.|.|..
T Consensus       155 ~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          155 PVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             ECCGGGCEEEEEECEEET
T ss_pred             CCCcCCCcEEEEEEEcCC
Confidence            999999999999999864

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.87  E-value=7.2e-19  Score=159.29  Aligned_cols=301  Identities=17%  Similarity=0.178  Sum_probs=192.9

Q ss_pred             eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCccc-ccCCCCeEEEEeeeeccCCCCCCeeEEEc
Q psy535          113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMY-QRKVGESVDMHCEAQEAEGTQKPTITWQR  191 (460)
Q Consensus       113 ~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~~~~p~~~~~W~~  191 (460)
                      .+.|.++.....-.|+..|.|..|.....   ...+...+  . .|.... .......+.|.+............+.|..
T Consensus        59 ~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~---~~~~~~~~--~-~p~~l~~~~~~~~si~l~W~~p~~~~~~~Y~v~~~~  132 (368)
T 1fnf_A           59 SCTFDNLSPGLEYNVSVYTVKDDKESVPI---SDTIIPAV--P-PPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSP  132 (368)
T ss_dssp             EEECCCCCTTSCEEEEEEEEETTEECCCE---EEEECCCC--C-CCEEEEEESCCSSCEEEEEECCTTCCCSEEEEEEEE
T ss_pred             EEEECCCCCCCEEEEEEEEEcCCCccCce---eeeecCCC--c-CCceeEEEEcCCCeEEEEeeCCCCCCCcEEEEEEEE
Confidence            57777888777777788888877643322   22221111  0 122221 12235567777765211011112555654


Q ss_pred             CCCccCCcccEEE--ecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-eeecceEEEEeecC
Q psy535          192 RDGVALPKNRVKI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPG  268 (460)
Q Consensus       192 ~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~  268 (460)
                      .++.. .......  ....+.+.++.....+.|++.|.|..|..... ..... .+|.+|..+.. .....++.|+|.++
T Consensus       133 ~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~-~~~~~-~~~~~P~~l~~~~~~~~sv~l~W~~p  209 (368)
T 1fnf_A          133 VKNEE-DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL-RGRQK-TGLDSPTGIDFSDITANSFTVHWIAP  209 (368)
T ss_dssp             TTCTT-CCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE-EEEEE-CCCCCCEEEEEESCCSSEEEEEEECC
T ss_pred             CCCCC-ccEEEEcCCCcceEEecCCCCCCEEEEEEEEEeCCCCCCCe-Eeeec-CCCCCCCccEEEEccCCEEEEEEeCC
Confidence            22211 1111112  23468888999988899999999988764332 22222 35566766654 34667999999975


Q ss_pred             CCCCCCceeeEEEEEEecCCC-CeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCc
Q psy535          269 YSGGPDLKQNYVIWYREQGNK-DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPR  347 (460)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~  347 (460)
                      .   . .+.+|.+.++..... .+..... ......+.+.+|.+++.|.|++.|.|..|.+..+.. .   ...+|.+|.
T Consensus       210 ~---~-~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~~-~---~~t~p~~P~  280 (368)
T 1fnf_A          210 R---A-TITGYRIRHHPEHFSGRPREDRV-PHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIG-Q---QSTVSDVPR  280 (368)
T ss_dssp             S---S-CCSEEEEEEECSCCSSCCEEEEE-ETTCCEEEEESCCTTCEEEEEEEEEETTEECCCEEE-E---EECCCCSCE
T ss_pred             C---C-CcCEEEEEEecCCCCCCccEEEe-CCCcCEEEECCCCCCCEEEEEEEEEeCCccCCcccc-c---ccCCCCCCC
Confidence            3   2 347899998876542 3332222 235678999999999999999999999997755432 2   224578899


Q ss_pred             ceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEE
Q psy535          348 NVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQIT  426 (460)
Q Consensus       348 ~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (460)
                      ++.+.... +++.|+|++|..   ++.+|.|+|+..+...                      ...+..   .....+.+.
T Consensus       281 ~l~~~~~~~~sv~l~W~~p~~---~i~~Y~v~~~~~~~~~----------------------~~~~~~---~~~~~~~~~  332 (368)
T 1fnf_A          281 DLEVVAATPTSLLISWDAPAV---TVRYYRITYGETGGNS----------------------PVQEFT---VPGSKSTAT  332 (368)
T ss_dssp             EEEEEEEETTEEEEEEECCSS---CCSEEEEEEEETTCCS----------------------CCEEEE---EETTCCEEE
T ss_pred             eeEEEecCCCEEEEEeeCCCC---ccceEEEEEEECCCCC----------------------ccEEEE---cCCCeeEEE
Confidence            99988766 699999999854   5899999999764300                      000111   124568999


Q ss_pred             ECCCCcCceEEEEEEEeecCCCCCCCc---eeEeec
Q psy535          427 INRLTPATTYEFQVVGKNELGDGMLSN---IVVVKT  459 (460)
Q Consensus       427 i~~L~p~~~Y~~~v~a~n~~G~s~~s~---~~~~~T  459 (460)
                      +.+|.|++.|.|+|+|.|..|.|++|.   .+.|+|
T Consensus       333 ~~~L~p~t~Y~~~V~A~~~~G~g~~s~~~~~i~~~T  368 (368)
T 1fnf_A          333 ISGLKPGVDYTITVYAVTGRGDSPASSKPISINYRT  368 (368)
T ss_dssp             ECSCCTTCCEEEEEEEECCCSSSCCBCCCEEEEECC
T ss_pred             ecCCCCCCEEEEEEEEeCCCCcCcccCceeeeeeeC
Confidence            999999999999999999999999886   344544

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.87  E-value=9.5e-22  Score=162.08  Aligned_cols=178  Identities=19%  Similarity=0.256  Sum_probs=132.8

Q ss_pred             EcceeeeecceeeEEEEEE-EecCCCCCeEEEeeCCeecCcccccc-EEEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           61 FTPTVQYLPFRLQGVVQCH-IKANPTFQYVTWTKDKRLLEPYQTKD-IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~-~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      ..+....+.+|+++.|.|. +.+.|..+.+.|++++..+......+ .....++.|.|.++..+|+|.|+|.+.+..+..
T Consensus        13 ~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~   92 (201)
T 3s97_C           13 EERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITK   92 (201)
T ss_dssp             SCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTE
T ss_pred             CCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCc
Confidence            3456678899999999999 77877624899999998775322233 333456689999999999999999999866544


Q ss_pred             ce-eeEEEEEee-------CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEE
Q psy535          139 GS-SGQMEVLVR-------KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNIT  210 (460)
Q Consensus       139 ~~-~~~~~v~v~-------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~  210 (460)
                      .. ...+.+.+.       .+|.+...+... .+..|+.++|.|.+   .+.|.+.+.|++++.......+....+..|.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~  168 (201)
T 3s97_C           93 SVFSKFIPLIPIPERTTKPYPADIVVQFKDV-YALMGQNVTLECFA---LGNPVPDIRWRKVLEPMPSTAEISTSGAVLK  168 (201)
T ss_dssp             EEECCCEEEEEECCSSCCCEEEEEEEECCCE-EEETTCCEEEEEEE---EEESCCEEEEEETTBCCCTTCEEETTTTEEE
T ss_pred             chhhcccceeeccccccCCCCCceEecCCce-EEecCCcEEEEEEc---cCCCCCceEEEeCCCcCCCceeecCCCCEEE
Confidence            32 223333332       244455544433 67889999999998   6889999999996554333334444567899


Q ss_pred             EccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535          211 IEGLRRVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       211 i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                      |.++...|.|.|+|.|.|..|.......|.|.
T Consensus       169 i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          169 IFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            99999999999999999999999888888775

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.87  E-value=1.4e-21  Score=157.22  Aligned_cols=169  Identities=16%  Similarity=0.153  Sum_probs=124.3

Q ss_pred             ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535           54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      ..+|.+...|....+.+|++++|.|.+.+.+.+..+.|++++..+..         .++.|.|.+++.+|+|.|+|.+.|
T Consensus         2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~~   72 (176)
T 1f2q_A            2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE---------TNSSLNIVNAKFEDSGEYKCQHQQ   72 (176)
T ss_dssp             --CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC---------CSSEEEECSCCGGGCEEEEEECTT
T ss_pred             CCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC---------CceEEEEeccceecCEEEEEEcCC
Confidence            34677778888888999999999999988876556999999988752         256799999999999999999987


Q ss_pred             CCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEcc
Q psy535          134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEG  213 (460)
Q Consensus       134 ~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~  213 (460)
                      ..+.    ..+.|.|..++.....+. . .+..|+.+.|.|.+.  .+.|.+.+.|+++ +..+..   ...+..|.|.+
T Consensus        73 ~~~s----~~~~l~V~~~~~~~~~~~-~-~~~~g~~~~l~C~~~--~~~p~~~~~W~~~-g~~~~~---~~~~~~L~i~~  140 (176)
T 1f2q_A           73 VNES----EPVYLEVFSDWLLLQASA-E-VVMEGQPLFLRCHGW--RNWDVYKVIYYKD-GEALKY---WYENHNISITN  140 (176)
T ss_dssp             SSCC----CCEEEEEECSSEEEEESC-S-EEETTSCEEEEEEEG--GGCCEEEEEEEET-TEECCS---CCCSSEEEESS
T ss_pred             cccc----ccEEEEEeCcceeecCCc-c-eeeCCCCEEEEEEec--CCCCceEEEEEEC-CEEEee---ecCCCeEEECC
Confidence            5543    234455554444433333 2 577999999999983  4667789999994 444321   12356899999


Q ss_pred             ccceeceEEEEEEecccce-eeeeeEEEEec
Q psy535          214 LRRVDFGYYECVVSNEVAT-IVQAAQLVVEG  243 (460)
Q Consensus       214 ~~~~~~g~y~C~a~n~~g~-~~~~~~l~v~~  243 (460)
                      +...|.|.|+|.|.|..+. .+..+.|.|..
T Consensus       141 v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  171 (176)
T 1f2q_A          141 ATVEDSGTYYCTGKVWQLDYESEPLNITVIK  171 (176)
T ss_dssp             CCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CCcccCEEEEEEEEeCCcceEecCEEEEEec
Confidence            9999999999999996443 45556777765

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.87  E-value=5.8e-22  Score=164.50  Aligned_cols=174  Identities=18%  Similarity=0.300  Sum_probs=131.7

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeec----------CccccccEEEeecCeEEEeecCCCCCe
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL----------EPYQTKDIVVMQNGSLLFTRVNQNHQG  125 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G  125 (460)
                      ++.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+          ......++.. ..+.|.|.++..+|+|
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~L~i~~~~~~d~G   81 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSP-RVEWKFDQGDTTRLVCYNNKITASYEDRVTF-LPTGITFKSVTREDTG   81 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSE-EEEEEEEETTEEEESEETTEECTTTTTTCEE-ETTEEECSCCCTTSCS
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCc-EEEEEEcCCceeEEEEecCccCccccCceEe-eccEEEEeeCCHHHCc
Confidence            3445566777788899999999999987655 79999987652          1112233333 3478999999999999


Q ss_pred             EEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc----
Q psy535          126 RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR----  201 (460)
Q Consensus       126 ~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~----  201 (460)
                      .|+|.+.+..|....+..+.|.|..+|.+...+... .+..|+.+.|.|.+.  .+.|.+.+.|++++........    
T Consensus        82 ~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~-~~~~g~~~~l~C~~~--~~~p~~~v~W~~~~~~~~~~~~~~~~  158 (209)
T 1nbq_A           82 TYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPS-SATIGNRAVLTCSEQ--DGSPPSEYTWFKDGIVMPTNPKSTRA  158 (209)
T ss_dssp             EEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBS-EEETTSCEEECCCCC--SCBSCCEEEEEETTCCCCSCSSSSSS
T ss_pred             EEEEEEecCCCCccceEEEEEEEecCCcCCCccccc-ceecCCEEEEEEeCC--CCCCCceeEEEECCeeCCCcccccee
Confidence            999999998775555667777788888776655544 578899999999963  6889999999996543332211    


Q ss_pred             -----EEE--ecceEEEccccceeceEEEEEEecccceee
Q psy535          202 -----VKI--VGGNITIEGLRRVDFGYYECVVSNEVATIV  234 (460)
Q Consensus       202 -----~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  234 (460)
                           ...  ....|.|.++...|.|.|+|.|.|..|...
T Consensus       159 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  198 (209)
T 1nbq_A          159 FSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPM  198 (209)
T ss_dssp             CTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCE
T ss_pred             eeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCccc
Confidence                 111  345799999999999999999999999873

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.87  E-value=2.7e-23  Score=186.33  Aligned_cols=198  Identities=11%  Similarity=0.097  Sum_probs=148.6

Q ss_pred             CCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEE
Q psy535           29 DSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV  108 (460)
Q Consensus        29 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~  108 (460)
                      |.|.|+|.+.+..     ..+.+.+-.+|.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+.... .....
T Consensus       136 ~~~~~~C~~~~~l-----~~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p-~i~W~~~~~~~~~~~-~~~~~  208 (347)
T 2ifg_A          136 PEQKLQCHGQGPL-----AHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLE-QAGWILTELEQSATV-MKSGG  208 (347)
T ss_dssp             GGGCCCCSSSSCS-----SCCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCC-CCCEEESCCCSSEEE-CCCCC
T ss_pred             cccCCCCCCChHH-----hcCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCC-EEEEEcCCceeeccc-cccee
Confidence            5789999887732     2222333457888888888889999999999999998876 799999987654321 11122


Q ss_pred             eecCeEEEeecCCCCCe-EEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCee
Q psy535          109 MQNGSLLFTRVNQNHQG-RYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTI  187 (460)
Q Consensus       109 ~~~~~l~i~~~~~~d~G-~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~  187 (460)
                      ..++.|.|.++..+|+| .|+|.|.|..|...  ..+.|.|..+|.+     ....+..|+.++|.|.+   .|.|.|.+
T Consensus       209 ~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~--~~~~l~V~~~P~i-----~~~~~~~g~~v~l~C~~---~g~P~p~i  278 (347)
T 2ifg_A          209 LPSLGLTLANVTSDLNRKNVTCWAENDVGRAE--VSVQVNVSFPASV-----QLHTAVEMHHWCIPFSV---DGQPAPSL  278 (347)
T ss_dssp             SSEEEEEEESCCSTTTTCCEEECCEETTEECC--EEECCCCBEEEEE-----EECCCEESSSEEEEEEE---EEESCCEE
T ss_pred             cccceEEEeeCChHHCCCeEEEEEEcCCCCEE--EEEEEEEcCCCee-----eeccCccCceEEEEEEe---eecCCCcE
Confidence            34567999999999999 99999999887764  4555666667765     11134568999999999   68899999


Q ss_pred             EEEcCCCccCCcccEEE-----------ecceEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535          188 TWQRRDGVALPKNRVKI-----------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       188 ~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      .|++++...........           ..+.|.|.++...|+|.|+|.|.|..|....++.+.|..
T Consensus       279 ~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  345 (347)
T 2ifg_A          279 RWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD  345 (347)
T ss_dssp             EEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCC
T ss_pred             EEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecC
Confidence            99985443332222221           144699999999999999999999999998888887764

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.87  E-value=7.8e-22  Score=183.43  Aligned_cols=206  Identities=13%  Similarity=0.186  Sum_probs=137.2

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE------------------ecCCeeE-Ecceeee-ecceeeEEEE
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV------------------EFPAKVT-FTPTVQY-LPFRLQGVVQ   77 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v------------------~~~p~~~-~~~~~~~-~~~g~~~~l~   77 (460)
                      +.|.|.++..+| |.|+|.|.|..+.. .....+.+                  ..+|.+. ..|.... +.+|++++|.
T Consensus       184 s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~  261 (444)
T 1igt_B          184 SSVTVTSSTWPS-QSITCNVAHPASST-KVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVT  261 (444)
T ss_dssp             EEEEECSTTTTT-SCCEEEEEETTTTE-EEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEE
T ss_pred             EEEEEchhhcCC-CeEEEEEEeCCCCc-ceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEE
Confidence            469999999999 99999999988763 22233322                  1245543 3333333 4789999999


Q ss_pred             EEEecCC---CCCeEEEeeCCeecCccccccEEEe------ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE--
Q psy535           78 CHIKANP---TFQYVTWTKDKRLLEPYQTKDIVVM------QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV--  146 (460)
Q Consensus        78 C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v--  146 (460)
                      |.+.+.+   +.+.|+|+|++..+...........      ..+.|.|.++..+|+|.|+|.|.|..+.......+.+  
T Consensus       262 C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~  341 (444)
T 1igt_B          262 CVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPK  341 (444)
T ss_dssp             EEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCC
T ss_pred             EEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccC
Confidence            9999874   4458999999988753222211111      2346999999999999999999998887644444443  


Q ss_pred             EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcCCCccCCccc-EE---Eecc------eEEEccc
Q psy535          147 LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRRDGVALPKNR-VK---IVGG------NITIEGL  214 (460)
Q Consensus       147 ~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~~~~~~~~~~-~~---~~~~------~l~i~~~  214 (460)
                      .+..+|.+.+.+.....+..| .++|.|.+   .| .|.+ .+.|++++. .+.... ..   ..++      .|.+...
T Consensus       342 ~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~---~g~~P~~~~v~W~k~g~-~l~~~~~~~~~~~~~g~~~~~s~l~i~~~  416 (444)
T 1igt_B          342 GSVRAPQVYVLPPPEEEMTKK-QVTLTCMV---TDFMPEDIYVEWTNNGK-TELNYKNTEPVLDSDGSYFMYSKLRVEKK  416 (444)
T ss_dssp             CCCBCCEEEEECCCGGGTTSS-EEEEEEEE---EEEBSSCCEEEEEETTE-ECSSEEECCCEECTTSCEEEEEEEEEEHH
T ss_pred             CCCCCCEEEEeCCChHHccCC-eEEEEEEE---EeeeCCCCEEEEEECCE-EccccccccceeCCCCCEEEEEEEEEChH
Confidence            456788776655443234444 59999999   55 5555 899999544 332211 10   1122      2445555


Q ss_pred             cceeceEEEEEEeccc
Q psy535          215 RRVDFGYYECVVSNEV  230 (460)
Q Consensus       215 ~~~~~g~y~C~a~n~~  230 (460)
                      ...|.|.|+|.|.|..
T Consensus       417 ~~~d~g~YtC~a~n~~  432 (444)
T 1igt_B          417 NWVERNSYSCSVVHEG  432 (444)
T ss_dssp             HHHTCCCEEEEEECTT
T ss_pred             HhcCCCeEEEEEECCC
Confidence            5566899999999864

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.87  E-value=2.7e-21  Score=161.08  Aligned_cols=177  Identities=17%  Similarity=0.261  Sum_probs=131.3

Q ss_pred             EcceeeeecceeeEEEEEEEecCCC---CCeEEEee----------------CCeecCc---cccccEEEee------cC
Q psy535           61 FTPTVQYLPFRLQGVVQCHIKANPT---FQYVTWTK----------------DKRLLEP---YQTKDIVVMQ------NG  112 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~----------------~~~~~~~---~~~~~~~~~~------~~  112 (460)
                      ..+....+.+|++++|.|.+.+.+.   .+.+.|++                ++..+..   ....++....      +.
T Consensus         5 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   84 (214)
T 3jz7_A            5 TPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDA   84 (214)
T ss_dssp             -CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBC
T ss_pred             cCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcc
Confidence            3455677889999999999988763   24799998                3333321   1234554443      45


Q ss_pred             eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcC
Q psy535          113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRR  192 (460)
Q Consensus       113 ~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~  192 (460)
                      +|.|.+++.+|+|.|+|.+.+..|..  +..+.|.|..+|.+...+... .+..|+.+.|.|.+.  .+.|.+.+.|+++
T Consensus        85 ~L~i~~v~~~D~G~Y~C~~~~~~~~~--~~~~~l~V~~~p~~~~~~~~~-~~~~g~~v~l~C~~~--~g~p~~~v~W~~~  159 (214)
T 3jz7_A           85 SINVTNLQLSDIGTYQCKVKKAPGVA--NKKFLLTVLVKPSGTRCFVDG-SEEIGNDFKLKCEPK--EGSLPLQFEWQKL  159 (214)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTEEE--EEEEEEEEECCCBSCEEEEES-CCBTTCCEEEEEECS--BCCSSCEEEEEEC
T ss_pred             cEEEccCChhhCeEEEEEEEeCCCcc--ccEEEEEEEcCCCCceeeeec-ceecCCcEEEEecCC--CCCCCCEEEEEEC
Confidence            79999999999999999999987754  556667777787765544443 477899999999984  6889999999985


Q ss_pred             CCcc-CCc-ccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535          193 DGVA-LPK-NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       193 ~~~~-~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                      ++.. +.. ......++.|.|.++...|.|.|+|.|.|..|.....+.|.|.
T Consensus       160 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          160 SDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             STTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             CCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            4322 221 1222235689999999999999999999999999888888776

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.86  E-value=8.1e-21  Score=157.72  Aligned_cols=174  Identities=19%  Similarity=0.216  Sum_probs=123.3

Q ss_pred             cceeeeecce--eeEEEEEEEecCCCCCeEEEeeC---CeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           62 TPTVQYLPFR--LQGVVQCHIKANPTFQYVTWTKD---KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        62 ~~~~~~~~~g--~~~~l~C~~~~~~~~~~v~W~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      .|....+.+|  ++++|.|.+.+ |.+ .++|+++   +..+..  ..++.....+.|.|.+++.+|+|.|+|.|.|..+
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~-~v~w~~~~~~g~~~~~--~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~   88 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNL-NVSLCARYPEKRFVPD--GNRISWDSKKGFTIPSYMISYAGMVFCEAKINDE   88 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTC-CEEEEEETTTEEECCC--SSSCEEETTTEEEEEGGGTTTCSEEEEEEC----
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCc-EEEEEhhcCCCccccC--CCcccccCCccEEEccCChhcCceEEEEEEECCe
Confidence            4577888999  99999999976 554 7999884   555542  2344444566899999999999999999988543


Q ss_pred             CcceeeEEEEEeeC--CCceeeCCCcccccCCCCeEEEEeeeeccCCCC--CCeeEEEcCCCccCCccc-E---------
Q psy535          137 TQGSSGQMEVLVRK--PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ--KPTITWQRRDGVALPKNR-V---------  202 (460)
Q Consensus       137 ~~~~~~~~~v~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p--~~~~~W~~~~~~~~~~~~-~---------  202 (460)
                      . ..+..+.|.|..  +|.+...+.....+..|+.++|.|.+   .+.|  .+.+.|++++........ .         
T Consensus        89 ~-~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~---~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~  164 (213)
T 2x1w_L           89 S-YQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTA---RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS  164 (213)
T ss_dssp             C-EECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEE---EECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSC
T ss_pred             e-EEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEE---ECCCCCceEEEEEecCCccceEEEeccccccccCc
Confidence            3 344445565543  34455555443367899999999999   5543  457999986554221111 0         


Q ss_pred             --EEecceEEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535          203 --KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       203 --~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                        ......|.|.++...|+|.|+|.|.|..|.....+.|.|..
T Consensus       165 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  207 (213)
T 2x1w_L          165 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE  207 (213)
T ss_dssp             SCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             cceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence              12234699999999999999999999999998888888875

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.86  E-value=3.1e-21  Score=157.77  Aligned_cols=145  Identities=29%  Similarity=0.488  Sum_probs=119.7

Q ss_pred             ccCcccceEEEeeCC-eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEec
Q psy535            4 KVGSLETRVVIKKDG-TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA   82 (460)
Q Consensus         4 ~~~~~~~r~~~~~~~-~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~   82 (460)
                      .+...+.|+.+..++ +|.|.+++.+|+|.|+|.+.+..|......+.|.|..+|.+...+....+.+|+++.|.|.+.+
T Consensus        47 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g  126 (192)
T 2iep_A           47 LIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMG  126 (192)
T ss_dssp             ECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEE
T ss_pred             EccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEec
Confidence            344557888887765 6999999999999999999998887556778899998888888888888899999999999999


Q ss_pred             CCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535           83 NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP  152 (460)
Q Consensus        83 ~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p  152 (460)
                      .|.+ .+.|++++..+..  ..++....++.|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|..||
T Consensus       127 ~p~~-~v~W~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~s~~~~l~V~~pp  192 (192)
T 2iep_A          127 NPKP-SVSWIKGDSALRE--NSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA-YSKLVKLEVEVFA  192 (192)
T ss_dssp             ESCC-EEEEEETTEECCC--CSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEEC--
T ss_pred             cCCc-eEEEEeCCEEccC--CCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcE-EEEEEEEEEEeCC
Confidence            8776 7999999998863  345666677889999999999999999999998876 3445666666554

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.86  E-value=6e-21  Score=155.88  Aligned_cols=142  Identities=18%  Similarity=0.292  Sum_probs=119.4

Q ss_pred             cCcccceEEEeeC----CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE
Q psy535            5 VGSLETRVVIKKD----GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI   80 (460)
Q Consensus         5 ~~~~~~r~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~   80 (460)
                      +...+.|+.+..+    ++|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+...+....+.+|+++.|.|.+
T Consensus        45 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~  124 (191)
T 1epf_A           45 LSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV  124 (191)
T ss_dssp             ECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEE
T ss_pred             ccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEE
Confidence            3446678887543    599999999999999999999998655577888899999999888888889999999999999


Q ss_pred             ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535           81 KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL  147 (460)
Q Consensus        81 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~  147 (460)
                      .+.|.+ .+.|++++..+......++....++.|.|.++..+|+|.|+|.|.|..+.......+.|.
T Consensus       125 ~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~  190 (191)
T 1epf_A          125 VSSLPP-TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI  190 (191)
T ss_dssp             ECSSCC-EEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred             CCCCCC-EEEEEECCEEeeccCCceEEEecCCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence            998876 799999999987655667777778899999999999999999999988665555555554

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.85  E-value=1.9e-20  Score=149.71  Aligned_cols=164  Identities=15%  Similarity=0.215  Sum_probs=122.8

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      |.+...|....+.+|+++.|.|.+.+.|+...+.|+++|..+...         ...+.|.++..+|+|.|+|.+.+...
T Consensus         5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~---------~~~~~~~~~~~~d~G~Y~C~~~~~~~   75 (170)
T 3ry4_A            5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH---------TQPSYRFKANNNDSGEYTCQTGQTSL   75 (170)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC---------CSSEEEEECCGGGCEEEEEEETTSBC
T ss_pred             CEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC---------ccceEEEecccccCeEEEEEEeCCCc
Confidence            345566776778899999999999998755589999999988632         34577889999999999999986433


Q ss_pred             CcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccc
Q psy535          137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRR  216 (460)
Q Consensus       137 ~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~  216 (460)
                          +..+.|.|..++.+...+..  .+..|+.+.|.|.+.  .+.|.+.+.|++++. .+.   ....+..|.|.++..
T Consensus        76 ----s~~~~l~v~~~~~~~~~~~~--~~~~g~~~~l~C~~~--~~~p~~~~~W~~~g~-~~~---~~~~~~~L~i~~v~~  143 (170)
T 3ry4_A           76 ----SDPVHLTVLFEWLVLQTPHL--EFQEGETIMLRCHSW--KDKPLVKVTFFQNGK-SQK---FSHLDPTFSIPQANH  143 (170)
T ss_dssp             ----CCCEEEEEECCSEEEECSCS--EECTTCCEEEEEEEG--GGCCEEEEEEEETTE-EEE---EESSCCEEEESSCCG
T ss_pred             ----eEeEEEEEECCceEecCCCc--eeecCCeEEEEEECC--CCCCCceEEEEECCe-Ecc---ccCCCCeEEEEeccc
Confidence                33466667767655554433  567899999999984  456778999999443 321   112356799999999


Q ss_pred             eeceEEEEEEecccce-eeeeeEEEE
Q psy535          217 VDFGYYECVVSNEVAT-IVQAAQLVV  241 (460)
Q Consensus       217 ~~~g~y~C~a~n~~g~-~~~~~~l~v  241 (460)
                      .|.|.|+|.|.|..|. .+..+.|.|
T Consensus       144 ~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          144 SHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cCCEEEEEEEEeCcCccccccEEEEE
Confidence            9999999999999886 344444444

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.85  E-value=2.1e-20  Score=159.68  Aligned_cols=174  Identities=16%  Similarity=0.162  Sum_probs=121.9

Q ss_pred             cceeeeecceeeEEEEEEEec---CCCCCeEEEeeCCeecC----------------------------ccccccEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKA---NPTFQYVTWTKDKRLLE----------------------------PYQTKDIVVMQ  110 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~---~~~~~~v~W~~~~~~~~----------------------------~~~~~~~~~~~  110 (460)
                      .+....+.+|++++|.|.+.+   .+.+ .+.|++++....                            +....+..+..
T Consensus         8 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   86 (250)
T 2fbo_J            8 THTEVEVHAGGTVELPCSYQLANDTQPP-VISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN   86 (250)
T ss_dssp             SCSEEEECTTSCEEECCEEEECSCCSCC-EEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC
T ss_pred             CCCceEEecCCeEEEEEEeEcCCCCCce-EEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc
Confidence            445677889999999999987   5544 799999875430                            11223333332


Q ss_pred             --cCeEEEeecCCCCCeEEEEEEEcCCCCcce---eeEEEEEeeCC---CceeeCCCcccccCCCCeEEEEeeeeccCCC
Q psy535          111 --NGSLLFTRVNQNHQGRYTCTPYNAHGTQGS---SGQMEVLVRKP---PAFTIKPEAMYQRKVGESVDMHCEAQEAEGT  182 (460)
Q Consensus       111 --~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~---~~~~~v~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~  182 (460)
                        +..|.|.+++.+|+|.|+|.+.+..+....   +..+.|.|..+   |.+...+.....+..|+.+.|.|.+   .+.
T Consensus        87 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~---~g~  163 (250)
T 2fbo_J           87 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPC---TDC  163 (250)
T ss_dssp             TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCE---ESC
T ss_pred             CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEe---cCC
Confidence              347999999999999999999988775432   44666777654   4444444433367789999999999   788


Q ss_pred             CCCeeEEEcCCCccCCc------------------------ccEEE-ecceEEEccccceeceEEEEEEeccc---ceee
Q psy535          183 QKPTITWQRRDGVALPK------------------------NRVKI-VGGNITIEGLRRVDFGYYECVVSNEV---ATIV  234 (460)
Q Consensus       183 p~~~~~W~~~~~~~~~~------------------------~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~---g~~~  234 (460)
                      |.|.+.|++++......                        .+... ....|.|.++...|.|.|+|.|.|..   |...
T Consensus       164 p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~  243 (250)
T 2fbo_J          164 ANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR  243 (250)
T ss_dssp             TTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEE
T ss_pred             CCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccc
Confidence            88999999954322210                        11111 23689999999999999999999954   4444


Q ss_pred             eeeEE
Q psy535          235 QAAQL  239 (460)
Q Consensus       235 ~~~~l  239 (460)
                      .++.|
T Consensus       244 ~~~~l  248 (250)
T 2fbo_J          244 SSTIL  248 (250)
T ss_dssp             EEEEE
T ss_pred             eeEEE
Confidence            44444

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.85  E-value=5.2e-20  Score=152.51  Aligned_cols=174  Identities=19%  Similarity=0.270  Sum_probs=125.0

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCc-----------------cccccEEEeecCeEEEeecCCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP-----------------YQTKDIVVMQNGSLLFTRVNQN  122 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~-----------------~~~~~~~~~~~~~l~i~~~~~~  122 (460)
                      .+.+....+.+|++++|.|.+.+.+.+ .+.|++++.....                 ....+..+..+++|.|.+++.+
T Consensus         3 ~i~~~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~   81 (208)
T 3r4d_A            3 TIEAVPPQVAEDNNVLLLVHNLPLALG-AFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMK   81 (208)
T ss_dssp             EEEEESSEEETTCCEEEEEECCCSSCS-EEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGG
T ss_pred             cccCccceeecCCcEEEEEeCCCCCce-EEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEcccccc
Confidence            344555678899999999997776654 7999997542211                 1234555666678999999999


Q ss_pred             CCeEEEEEEEcCCCCcceeeEEEEEeeCC---CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc
Q psy535          123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKP---PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK  199 (460)
Q Consensus       123 d~G~y~C~~~~~~g~~~~~~~~~v~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~  199 (460)
                      |+|.|+|.+.+..+. .....+.|.|..+   |.+...+..   +..|+.+.|.|.+   .+.| +.+.|++++..+...
T Consensus        82 D~G~Y~C~~~~~~~~-~~~~~~~l~V~~~~~~p~i~~~~~~---~~~g~~v~l~C~~---~~~p-p~i~W~~~g~~l~~~  153 (208)
T 3r4d_A           82 DMGVYTLDMTDENYR-RTQATVRFHVHQPVTQPFLQVTNTT---VKELDSVTLTCLS---NDIG-ANIQWLFNSQSLQLT  153 (208)
T ss_dssp             GCEEEEEEEECSSCE-EEEEEEEEEEECCCCCCEEEESCSS---CCTTCCEEEEEEC---SCTT-CEEEEEETTEECCCC
T ss_pred             CCeEEEEEEEcccCc-eeEEEEEEEeccCCCCCEEecCCce---EeeCCCEEEEEEC---CCCC-CceEEEECCEeCCCC
Confidence            999999999987542 2455666666655   444333322   7889999999998   5655 799999955444444


Q ss_pred             ccEEEe--cceEEEccccceeceEEEEEEecccceeee-eeEEEEe
Q psy535          200 NRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQ-AAQLVVE  242 (460)
Q Consensus       200 ~~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~-~~~l~v~  242 (460)
                      .++...  +..|.|.++...|.|.|+|.|.|..|...+ .+.|.|.
T Consensus       154 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~  199 (208)
T 3r4d_A          154 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII  199 (208)
T ss_dssp             SSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred             CCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence            455543  367999999999999999999999998543 3344443

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.85  E-value=1.9e-21  Score=172.75  Aligned_cols=264  Identities=14%  Similarity=0.143  Sum_probs=152.6

Q ss_pred             CCeeEEcceeeeecce--eeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecC------eEEEeecCCCCCeE
Q psy535           56 PAKVTFTPTVQYLPFR--LQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNG------SLLFTRVNQNHQGR  126 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g--~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~  126 (460)
                      +|.+.+.+.......|  +++.|.|.+.+. |+.+.|+|+|+|..+............++      .|.|.++..+|+|.
T Consensus         7 ~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~   86 (323)
T 2wqr_A            7 PPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRT   86 (323)
T ss_dssp             CCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCC
T ss_pred             CCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCc
Confidence            4555444433322334  699999999886 43458999999998864221111111233      47777777789999


Q ss_pred             EEEEEEcCCCCcceeeEEEEE---eeCCCceee-CCCcccccCCCCeEEEEeeeeccCCCCCC---eeEEEcCCCccCCc
Q psy535          127 YTCTPYNAHGTQGSSGQMEVL---VRKPPAFTI-KPEAMYQRKVGESVDMHCEAQEAEGTQKP---TITWQRRDGVALPK  199 (460)
Q Consensus       127 y~C~~~~~~g~~~~~~~~~v~---v~~~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~p~~---~~~W~~~~~~~~~~  199 (460)
                      |+|.|.|..+...  ..+.+.   +..+|.+.+ .|... .+..|+.++|.|.+.  ...|.+   .+.|+++++..+..
T Consensus        87 Y~C~a~n~~~~~~--~~~~~~~~~~~~~p~v~~~~p~~~-~v~~G~~v~L~C~~~--g~~P~p~~~~i~W~k~~g~~~~~  161 (323)
T 2wqr_A           87 YTCQVTYQGHTFE--DSTKKCADSNPRGVSAYLSRPSPF-DLFIRKSPTITCLVV--DLAPSKGTVQLTWSRASGKPVNH  161 (323)
T ss_dssp             EEEEEEETTEEEE--EEECCCCCSSGGGCEEEECCCCHH-HHHTSSCCEEEEEEE--EECCCSSCCEEEEEETTCCCCCC
T ss_pred             EEEEEEeCCCCcc--eeeecCCCCCCCCCEEEEcCCCHH-HhccCCeEEEEEEEe--ccCCCCCceEEEEEECCCccccc
Confidence            9999998765432  222110   111233323 33332 577899999999983  234555   89999966555432


Q ss_pred             cc-EE--------EecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCcee-e----eeecceEEEEe
Q psy535          200 NR-VK--------IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNIT-G----VATEFSVTLEW  265 (460)
Q Consensus       200 ~~-~~--------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~-~----~~~~~~~~l~w  265 (460)
                      .. ..        ...+.|.|.++...|.|.|+|.|.|..+.......+.+......+|.... .    ...+..++|.|
T Consensus       162 ~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C  241 (323)
T 2wqr_A          162 STRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLAC  241 (323)
T ss_dssp             CCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEE
T ss_pred             ccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEE
Confidence            11 11        12346999999999999999999998643322222221100112222111 1    11267899999


Q ss_pred             ecCCCCCCCceeeEEEEEEecCCCCee--ee--ec-cCCC----CceEEEccCccCccEEEEEEEEcCCCC
Q psy535          266 LPGYSGGPDLKQNYVIWYREQGNKDWL--PI--PV-TPPG----STQITINRLTPATTYEFQVVGKNELGD  327 (460)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~-~~~~----~~~~~i~~l~~~~~~~~~~~a~n~~G~  327 (460)
                      ...  +.+++ ...+.|++++......  ..  .. ...+    ...|.|..+...+.|.|.|.|.|..+.
T Consensus       242 ~~~--g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          242 LIQ--NFMPE-DISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EEE--EEBSS-CCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             Eee--eeeCC-CcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            742  21111 1136788765421111  00  00 0111    135788888888899999999998864

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.85  E-value=7.6e-19  Score=153.40  Aligned_cols=209  Identities=22%  Similarity=0.290  Sum_probs=153.7

Q ss_pred             ceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEe
Q psy535          207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYRE  285 (460)
Q Consensus       207 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~  285 (460)
                      ..+.+.++.....+.|+..|.|..|..............+.+|.++.. .....++.|+|.++.   . .+.+|.+.++.
T Consensus        74 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~t~~~~~~P~~l~~~~~~~~sv~l~W~~p~---~-~~~~Y~v~~~~  149 (290)
T 3r8q_A           74 SSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISWRTKT---E-TITGFQVDAVP  149 (290)
T ss_dssp             CEEEECSCCSSCEEEEEEEEEETTEECCCEEEEEECCCCCCCCEEEEEEEECSSCEEEEEECCS---C-CCCEEEEEEEE
T ss_pred             cEEEeCCCCCCCEEEEEEEEEeCCCCCCCcceeEecCCCCCCCceeEEEEcCCCeEEEEEeCCC---C-cccEEEEEEEE
Confidence            468899999998999999999988876544322222223456666654 446779999999752   2 34789999887


Q ss_pred             cCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecC
Q psy535          286 QGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQP  364 (460)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~  364 (460)
                      .+...+..... ......+.|.+|.++..|.|++.|.|..|.+... .+...+   .|.+|.++.+...+ +++.|+|++
T Consensus       150 ~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~-~~~~~t---~p~~P~~l~~~~~~~~sv~l~W~~  224 (290)
T 3r8q_A          150 ANGQTPIQRTI-KPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPV-VIDAST---AIDAPSNLRFLATTPNSLLVSWQP  224 (290)
T ss_dssp             SSSCCCEEEEE-CTTCSEEEECSCCTTCEEEEEEEEEETTEECCCE-EEEEEC---CCCCCEEEEEEEEETTEEEEEEEC
T ss_pred             CCCCcceEEec-CCCccEEEECCCCCCCEEEEEEEEEeCCcccCCE-EEEecC---CCCCCCccEEEeeCCCEEEEEEeC
Confidence            66544333322 2366789999999999999999999998876542 233332   37889999988766 699999999


Q ss_pred             CCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEee
Q psy535          365 PLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN  444 (460)
Q Consensus       365 ~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  444 (460)
                      |.   +.+.+|.|+|+..+..                         .|..........+.+.+.+|.|++.|.|+|+|.|
T Consensus       225 p~---~~~~~Y~v~~~~~~~~-------------------------~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~  276 (290)
T 3r8q_A          225 PR---ARITGYIIKYEKPGSP-------------------------PREVVPRPRPGVTEATITGLEPGTEYTIYVIALK  276 (290)
T ss_dssp             CS---SCCCEEEEEEECTTSC-------------------------CEECSSCCCTTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred             CC---CcccEEEEEEEeCCCC-------------------------cceeEeccCCCccEEEECCCCCCCEEEEEEEEEe
Confidence            85   4799999999975431                         1111222335678999999999999999999999


Q ss_pred             cCCCCCCC
Q psy535          445 ELGDGMLS  452 (460)
Q Consensus       445 ~~G~s~~s  452 (460)
                      ..|.|++.
T Consensus       277 ~~g~s~p~  284 (290)
T 3r8q_A          277 NNQKSEPL  284 (290)
T ss_dssp             TTEECCCE
T ss_pred             CCCcCCcc
Confidence            99998663

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.85  E-value=2.1e-19  Score=158.52  Aligned_cols=275  Identities=15%  Similarity=0.119  Sum_probs=168.3

Q ss_pred             cceeeeecceeeEEEEEEEecC--C--CCCeEEEeeCCeecCccccccEEEeec---CeEEEeecCCCCCeEEEEEEEcC
Q psy535           62 TPTVQYLPFRLQGVVQCHIKAN--P--TFQYVTWTKDKRLLEPYQTKDIVVMQN---GSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~--~--~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      .|....+..|++++|.|.+.+.  +  +.+.+.|+++|..+.. . .......+   +.|.|.++...|+|.|.|.+.+.
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~-~-~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~   83 (313)
T 2d9q_B            6 SVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPG-G-RQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGN   83 (313)
T ss_dssp             EESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTT-C-EECCCSSSCCCEEEEESCCCSSEEEEEEEEESSS
T ss_pred             ECCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCc-c-ceEEEecCeEEEEEEEeccCCCccceEEeeecCC
Confidence            4556778899999999999886  2  1347999999987742 1 11111122   46999999999999999988653


Q ss_pred             CCCcceeeEEEEEeeCCCceeeCCCcccccCC--CCeEEEEeeeeccCCCCC-CeeEEEcCCCccC-CcccEE-E----e
Q psy535          135 HGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKV--GESVDMHCEAQEAEGTQK-PTITWQRRDGVAL-PKNRVK-I----V  205 (460)
Q Consensus       135 ~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~--g~~~~l~C~~~~~~~~p~-~~~~W~~~~~~~~-~~~~~~-~----~  205 (460)
                        .......+.|.+..+|..   |........  ...+++.+....+.+.+. ..+.+...+.... ...... .    .
T Consensus        84 --~~~~~~~~~l~v~~~P~~---P~~l~c~~~~~~~~~~~~W~~~~~~~~~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~  158 (313)
T 2d9q_B           84 --SLQILDQVELRAGYPPAI---PHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDG  158 (313)
T ss_dssp             --SEEEEEEEEEEECCCCCC---CEEEEEEEETTTTEEEEEEECCSCCSSCCEEEEEEEECCTTSCSCCCCEEEECCCTT
T ss_pred             --CceeEEEEEEccCCCCCC---CccceeeECCCCccEEEEecCCCCCCCceeEEEEEEecCCCcccCCcccccCCCCCC
Confidence              333455667777777643   222211112  234444443211111111 1233332211100 001111 1    0


Q ss_pred             cceEEE--ccccceeceEEEEEEecccceeeeee-EEEEe-cCCCCCCCceeeee-------ecceEEEEeecCCCCCCC
Q psy535          206 GGNITI--EGLRRVDFGYYECVVSNEVATIVQAA-QLVVE-GTQPHAPYNITGVA-------TEFSVTLEWLPGYSGGPD  274 (460)
Q Consensus       206 ~~~l~i--~~~~~~~~g~y~C~a~n~~g~~~~~~-~l~v~-~~~p~~p~~~~~~~-------~~~~~~l~w~~~~~~~~~  274 (460)
                      .....+  .++.....+.+++.|.|..|...... .+... ..+|.+|.++....       ....+.|+|.++...+. 
T Consensus       159 ~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~~~~~-  237 (313)
T 2d9q_B          159 QSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLH-  237 (313)
T ss_dssp             CSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEECCC-------CCSCEEEEEECCGGGTT-
T ss_pred             CcEEEECccccccceeEEEEEEEECCCCCccCccEEEehhheeccCcCceeEEEEecccccCCCCeEEEEECCCCCCCc-
Confidence            123344  34777778999999999999864322 22221 13577887776543       35789999998764333 


Q ss_pred             ceeeEEEEEE-ecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCC---CCCCcEEEEccCCCCC
Q psy535          275 LKQNYVIWYR-EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGPKPG  344 (460)
Q Consensus       275 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~---~~s~~~~~~~~~~~P~  344 (460)
                      ....|.+.|+ ..+...|..+.........+.|.+|.+++.|.|+++|.|..|.|   .+|..+.+.+.+.+|.
T Consensus       238 ~~l~Y~v~y~~~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~P~  311 (313)
T 2d9q_B          238 INQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAA  311 (313)
T ss_dssp             SCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC----
T ss_pred             eeEEEEEEEccCCCCCCcEEcccccCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCccceeCCccCCC
Confidence            3479999999 66667787665443355789999999999999999999986655   5777888888766553

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.85  E-value=1.5e-18  Score=153.79  Aligned_cols=271  Identities=15%  Similarity=0.132  Sum_probs=168.7

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      +...+....+..|++++|.|.+.+.+..+.|+|++++..+.. ...+ ....++.|.|.++...|+|.|+|.+   .|..
T Consensus         9 ~~~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~-~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~---~g~~   83 (325)
T 1n26_A            9 QEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGS-HPSR-WAGMGRRLLLRSVQLHDSGNYSCYR---AGRP   83 (325)
T ss_dssp             CCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSC-CCEE-EEEESSEEEECSCCGGGCEEEEEES---SSSC
T ss_pred             cccCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCc-cccc-cccccceEEecccchhhCeEeEEEe---CCEE
Confidence            334445555578999999999987664558999998876521 2222 3345678999999999999999993   4554


Q ss_pred             ceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeecc-CCCCCC--eeEEEcCCCccCCcccEEEe------cceE
Q psy535          139 GSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEA-EGTQKP--TITWQRRDGVALPKNRVKIV------GGNI  209 (460)
Q Consensus       139 ~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~p~~--~~~W~~~~~~~~~~~~~~~~------~~~l  209 (460)
                      ..  .+.|.|..+|..   |. ......+....+.|.+... .+.+..  .+.+.+..+...........      ...+
T Consensus        84 ~~--~~~L~V~~pP~~---P~-l~c~~~~~~~~~~c~W~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~c~~~~~~~~~~c  157 (325)
T 1n26_A           84 AG--TVHLLVDVPPEE---PQ-LSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSC  157 (325)
T ss_dssp             SC--EEEEEECCCCCC---CC-CEEEBSSTTSCEEEEECCSSCCCTTCEEEEEEEEESSSSCEEEEEEEEEETTTTEEEE
T ss_pred             ee--eEEEEeccCCCC---Cc-eeEEeecCCCcEEEEECCCCCCCCCceEEEEEEEccCCCCCcccccCCCCCCCCCEEE
Confidence            33  466667777753   22 2111123333566766421 111111  33333311110000000110      1235


Q ss_pred             EEcccc-ceeceEEEEEEecccceeee-eeEEEE-ecCCCCCCCceeeeee---cceEEEEeecCCCC-CCCceeeEEEE
Q psy535          210 TIEGLR-RVDFGYYECVVSNEVATIVQ-AAQLVV-EGTQPHAPYNITGVAT---EFSVTLEWLPGYSG-GPDLKQNYVIW  282 (460)
Q Consensus       210 ~i~~~~-~~~~g~y~C~a~n~~g~~~~-~~~l~v-~~~~p~~p~~~~~~~~---~~~~~l~w~~~~~~-~~~~~~~~~~~  282 (460)
                      .+..+. ....+.|+|.|.|..|.... ...+.+ ...+|.+|.++.....   ...+.|+|.++... ...++..|.++
T Consensus       158 ~i~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~  237 (325)
T 1n26_A          158 QLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELR  237 (325)
T ss_dssp             EECCCTTCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEE
T ss_pred             EECCCcccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeEEEEEE
Confidence            555544 44667889999999998642 222222 1235778877765443   25899999987653 22334799999


Q ss_pred             EEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCC---CCCCcEEEEccCC
Q psy535          283 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKTKGP  341 (460)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~---~~s~~~~~~~~~~  341 (460)
                      |+..+...|....... ....+.|.+|.++..|.|+++|.|..|.|   .+|..+..++...
T Consensus       238 yr~~~~~~W~~~~~~~-~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~wS~~~~~~~~~~  298 (325)
T 1n26_A          238 YRAERSKTFTTWMVKD-LQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTE  298 (325)
T ss_dssp             EEETTCSCCEEEECGG-GCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCCCCCEEECCCCC
T ss_pred             EEeCCCCCCEEEcccC-CceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCCCCccceecCCC
Confidence            9998877887765432 45789999999999999999999988754   4556666655443

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=99.85  E-value=7.2e-20  Score=152.23  Aligned_cols=189  Identities=16%  Similarity=0.176  Sum_probs=135.0

Q ss_pred             CCCCCCCceeeeee--cceEEEEeecCCCCCCCceeeEEEEEEecCCC------Ceeeeec-cCCCCceEEEccCccCcc
Q psy535          244 TQPHAPYNITGVAT--EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK------DWLPIPV-TPPGSTQITINRLTPATT  314 (460)
Q Consensus       244 ~~p~~p~~~~~~~~--~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~i~~l~~~~~  314 (460)
                      .+|.+|.++.+...  ...+.++|.++.+++..  ..|.+.++.....      .+..... .......+.+.+|.+...
T Consensus         3 ~pP~~P~~l~c~~~~~~~~~~~~W~p~~~~~~~--~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~   80 (215)
T 1cd9_B            3 YPPASPSNLSCLMHLTTNSLVCQWEPGPETHLP--TSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQY   80 (215)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECCSCCSSC--CEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSC
T ss_pred             CCCCCCeeeeeecCCCcccEEEEecCCCCCCCc--eeEEEEEEecCCcccccccccccCCCCCCCcEEEECCcccccceE
Confidence            57888988886544  67999999988765543  4688888865421      1222211 122335677778999999


Q ss_pred             EEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEee-------cceEEEEecCCCCCCccceEEEEEEE-EcCCe
Q psy535          315 YEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEV-------NNGFVISWQPPLERASLIQYYLIKYR-TDGSW  385 (460)
Q Consensus       315 ~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~-------~~~v~l~W~~~~~~~~~i~~y~i~~~-~~~~~  385 (460)
                      |.|+|.|.|..|.+ .+..+.+.+.. ..|.||.++.+...       .+++.|+|++|...+..+.+|+|+|+ ..+. 
T Consensus        81 Y~~~V~A~N~~G~~-~s~~~~~~~~~~v~p~pP~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~~l~Y~v~y~~~~~~-  158 (215)
T 1cd9_B           81 MAIWVQAENMLGSS-ESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKG-  158 (215)
T ss_dssp             EEEEEEEEETTEEE-ECCCEEECGGGGBCCCCCEEEECCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESSTT-
T ss_pred             EEEEEEEECCCCCc-cCccEEEchHHceEeCCCcEEEEEEeccccCCCCCeEEEEEeCCCCCCeEEEEEEEEEccCCCC-
Confidence            99999999999975 35556665544 35899999998775       36899999999765555689999999 4332 


Q ss_pred             eeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCC---CCCCceeEeecC
Q psy535          386 KTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD---GMLSNIVVVKTK  460 (460)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~---s~~s~~~~~~T~  460 (460)
                                              ..|..+.......+.+.|.+|.|++.|.|+|+|.|..|.   |++|..+.++|.
T Consensus       159 ------------------------~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~~~~~~T~  212 (215)
T 1cd9_B          159 ------------------------ANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPT  212 (215)
T ss_dssp             ------------------------CCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEEECCC
T ss_pred             ------------------------CCcEEEecccCcceEEEEcCCCCCCEEEEEEEeeECCCCCCCcCCCCccceecC
Confidence                                    122222111234578999999999999999999999765   567888888874

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=99.85  E-value=1.4e-19  Score=149.68  Aligned_cols=187  Identities=22%  Similarity=0.334  Sum_probs=138.6

Q ss_pred             CCCCCCCceeee-eecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeecc-CCCCceEEE--ccCccCccEEEEE
Q psy535          244 TQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT-PPGSTQITI--NRLTPATTYEFQV  319 (460)
Q Consensus       244 ~~p~~p~~~~~~-~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i--~~l~~~~~~~~~~  319 (460)
                      .||.+|.++.+. .....+.++|.++...+.+  ..|.+.|+..+...|...... ......+.+  .+|.+...|.|++
T Consensus         2 ~pP~~P~nl~c~~~~~~~~~c~W~p~~~~~~~--~~Y~l~y~~~~~~~~~~c~~~~~~~~~~c~~~~~~l~~~~~Y~~~V   79 (210)
T 3n06_B            2 LPPGKPEIFKCRSPNKETFTCWWRPGTDGGLP--TNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMV   79 (210)
T ss_dssp             CCCCCCEEEEEEBSSSSCEEEEEECCSSSCCC--SEEEEEEEETTCCCCEECSCSSTTCTTEEEECGGGCCSSSCEEEEE
T ss_pred             CCCCCCeEeEEEeCCCCeEEEEECCCCCCCCC--ceEEEEEEECCCCccccCCCCCCCCCeEEEeCCCCcccceeEEEEE
Confidence            378889888764 4667999999988765543  589999987665566554311 112334544  5689999999999


Q ss_pred             EEEcCCCCCCCCCcEEEEccCC-CCCCCcceEEEeec-----ceEEEEecCCCCCC---c-cceEEEEEEEEcCCeeeec
Q psy535          320 VGKNELGDGMLSNIVVVKTKGP-KPGPPRNVSVTEVN-----NGFVISWQPPLERA---S-LIQYYLIKYRTDGSWKTLN  389 (460)
Q Consensus       320 ~a~n~~G~~~~s~~~~~~~~~~-~P~~p~~~~~~~~~-----~~v~l~W~~~~~~~---~-~i~~y~i~~~~~~~~~~~~  389 (460)
                      .|.|..|.+ .+..+.+..... .|.||.++.+....     +++.|+|++|....   + .+.+|+|+|+..+.     
T Consensus        80 ~A~N~~G~~-~s~~~~~~~~~~v~p~pP~~l~~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~~~Y~v~y~~~~~-----  153 (210)
T 3n06_B           80 NATNQMGSS-FSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKA-----  153 (210)
T ss_dssp             EEEETTEEE-ECCCEEECGGGCBCCCCCEEEEEEEECCSSSCCEEEEEEECCTTCCCTTSSCCEEEEEEEECTTC-----
T ss_pred             EEEcCCCCe-eCCcEEEchhheEecCCCceEEEEEecCcCCCceEEEEcCCCCCccccCCeEEEEEEEEEecCCC-----
Confidence            999999987 355566654443 48899999988653     68999999986543   3 57999999997542     


Q ss_pred             cccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCC-CCCCceeEeecC
Q psy535          390 KGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD-GMLSNIVVVKTK  460 (460)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~-s~~s~~~~~~T~  460 (460)
                                          ..|....  ....+.+.|.+|.|++.|.|+|+|.|..|. |+||..+.++|+
T Consensus       154 --------------------~~~~~~~--~~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~wS~wS~~~~~~Tp  203 (210)
T 3n06_B          154 --------------------AEWEIHF--AGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIP  203 (210)
T ss_dssp             --------------------SSCEEEE--EETCSEEEECCCCTTCEEEEEEEEEESSSCCCCCCCCEEEECC
T ss_pred             --------------------CCCEEEe--ccCceEEEEeccCCCCEEEEEEEEecCCCcccCCCCceeEECc
Confidence                                0121111  124578999999999999999999999997 999999999985

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.85  E-value=1.1e-20  Score=159.09  Aligned_cols=180  Identities=15%  Similarity=0.213  Sum_probs=124.9

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      .+|.+...|.. .+.+|++++|.|.+.+.  +..+.|+|++..+............++.|.|.+++.+|+|.|+|.+.+.
T Consensus         6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~~--~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   82 (242)
T 1p6f_A            6 PKPFIWAEPHF-MVPKEKQVTICCQGNYG--AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG   82 (242)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTT--CCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEEeeCCC--CcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecC
Confidence            35667777765 78899999999998653  3479999999876421111001123457999999999999999999886


Q ss_pred             CCCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc-EEEecceEE
Q psy535          135 HGTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR-VKIVGGNIT  210 (460)
Q Consensus       135 ~g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~l~  210 (460)
                      .+....+..+.|.|..   +|.+...+..  .+..|++++|.|.+   .+ +.+.+.|++++. .+.... .......|.
T Consensus        83 ~~~s~~S~~~~L~V~~~~~~P~i~~~p~~--~v~~G~~vtL~C~~---~~-~~~~~~w~k~g~-~~~~~~~~~~~~~~l~  155 (242)
T 1p6f_A           83 ELWSEPSNLLDLVVTEMYDTPTLSVHPGP--EVISGEKVTFYCRL---DT-ATSMFLLLKEGR-SSHVQRGYGKVQAEFP  155 (242)
T ss_dssp             TEECCCCCCEEEEEECCSCCCEEEEESCS--EEETTCEEEEEEEC---TT-SCSEEEEEECSS-SCEEEEEECSSEEEEE
T ss_pred             CccccCCcceEEEeecccCCCceEccCCC--ccCCCCcEEEEEec---CC-CCCEEEEEECCC-ccCccccCCCceEEEE
Confidence            5544445566676663   5666655533  57899999999997   33 356999999554 332211 111245799


Q ss_pred             EccccceeceEEEEEEeccc---ceeeeeeEEEEecC
Q psy535          211 IEGLRRVDFGYYECVVSNEV---ATIVQAAQLVVEGT  244 (460)
Q Consensus       211 i~~~~~~~~g~y~C~a~n~~---g~~~~~~~l~v~~~  244 (460)
                      |.++...|+|.|+|.+.|..   ...+..+.|.|.+.
T Consensus       156 I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~  192 (242)
T 1p6f_A          156 LGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD  192 (242)
T ss_dssp             EEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred             eCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence            99999999999999999864   23445667777753

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.85  E-value=1.3e-19  Score=146.80  Aligned_cols=162  Identities=18%  Similarity=0.312  Sum_probs=122.7

Q ss_pred             eeecceeeEEEEEEEecCCCC-CeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535           66 QYLPFRLQGVVQCHIKANPTF-QYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM  144 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~  144 (460)
                      ..+.+|++++|.|.+.+.+.+ ..+.|+|++..+.......    ....|.|.  +.+|+|.|+|.+.|.     ....+
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~----~~~~l~i~--~~~d~G~Y~C~~~n~-----~~~~~   76 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG----QKTEFKVD--SDDQWGEYSCVFLPE-----PMGTA   76 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC----SEEEEEEC--GGGCCEEEEEEEEST-----TSCEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC----CcEEEEEe--chhhCeEEEEEEECC-----cCcEE
Confidence            346789999999999887543 2799999998886432111    12245555  689999999999972     23456


Q ss_pred             EEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCC-CCeeEEEc---CCCccCC---cccEEEe----cceEEEcc
Q psy535          145 EVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-KPTITWQR---RDGVALP---KNRVKIV----GGNITIEG  213 (460)
Q Consensus       145 ~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~---~~~~~~~---~~~~~~~----~~~l~i~~  213 (460)
                      .|.|..+|.+...+... .+..|+.++|.|.+   .+.| .+.+.|++   ++...+.   ..++.+.    ...|.|.+
T Consensus        77 ~l~V~~~P~~~~~~~~~-~~~~g~~~~l~C~~---~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  152 (184)
T 3b5h_A           77 NIQLHGPPRVKAVKSSE-HINEGETAMLVCKS---ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIEN  152 (184)
T ss_dssp             EEEECCSCCCEESCSEE-EECTTSCEEEEEEC---CCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECS
T ss_pred             EEEEecCCceeecCCCc-EEcCCCcEEEEEEE---CCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEee
Confidence            67778899988887655 67889999999998   7888 79999999   4444442   1344432    13799999


Q ss_pred             cc-ceeceEEEEEEecccceeeeeeEEEEe
Q psy535          214 LR-RVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       214 ~~-~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                      +. ..|.|.|+|.|.|..|.....+.|.|.
T Consensus       153 v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          153 LNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             CCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            99 899999999999999998888888775

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.85  E-value=6e-21  Score=156.03  Aligned_cols=128  Identities=20%  Similarity=0.252  Sum_probs=101.0

Q ss_pred             ceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCC
Q psy535           10 TRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTF   86 (460)
Q Consensus        10 ~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~   86 (460)
                      +++.+..+   ++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..||.+...+....+.+|++++|.|.+.|.|.|
T Consensus        58 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P  136 (203)
T 4fa8_A           58 GFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHP  136 (203)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCC
T ss_pred             ceEEEEEcCCEEEEEEccCCHHHCeEEEEEEEcCCCcE-EEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCC
Confidence            44554443   379999999999999999999998875 77889999999988888888899999999999999999876


Q ss_pred             CeEEEeeCCeecC-c-cccccEEEeecCeEEE---eecCCCCCeEEEEEEEcCCCCcc
Q psy535           87 QYVTWTKDKRLLE-P-YQTKDIVVMQNGSLLF---TRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        87 ~~v~W~~~~~~~~-~-~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                       .|+|++++..+. + ....++.+..+++|.|   .++..+|+|.|+|.|.|..|..+
T Consensus       137 -~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~  193 (203)
T 4fa8_A          137 -HVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH  193 (203)
T ss_dssp             -EEEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEE
T ss_pred             -EEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence             899998765442 1 2345666777776555   58999999999999999999764

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=99.84  E-value=2.3e-19  Score=174.66  Aligned_cols=218  Identities=16%  Similarity=0.241  Sum_probs=152.4

Q ss_pred             eeceEEEEEEecccceeeeeeEEEEecCCCCCC-Cceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCC------
Q psy535          217 VDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP-YNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN------  288 (460)
Q Consensus       217 ~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p-~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~------  288 (460)
                      ...|.+.| +.|..|..=.. ...+....|.+| .++.. .....++.|+|.++...+..++. |.+.++....      
T Consensus       133 ~c~g~~~C-c~n~cG~~C~~-P~~~~~~~P~~P~~~l~v~~~~~~sv~l~W~pp~~~~~~~i~-Y~V~~r~~~g~~~~~~  209 (680)
T 1zlg_A          133 ECSGVKKC-CSNGCGHTCQV-PKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI-YVVQRRWNYGIHPSED  209 (680)
T ss_pred             cCCCcccc-ccccccccccc-cceeeecccccccccceEEeccCceEEEEEeCCCCCCCCCEE-EEEEEEECCCCCcCcc
Confidence            34566777 45555553111 122222356666 56553 45678999999987654455555 9999987532      


Q ss_pred             --CCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCC-CCCCCCcEEEEccC--CCCCCCcceEEEee--c-c---e
Q psy535          289 --KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG-DGMLSNIVVVKTKG--PKPGPPRNVSVTEV--N-N---G  357 (460)
Q Consensus       289 --~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G-~~~~s~~~~~~~~~--~~P~~p~~~~~~~~--~-~---~  357 (460)
                        ..|..+..  .....+.|.+|.+++.|.|+|.|.|..| .+..+....+++..  .+|.+|.++++...  + +   +
T Consensus       210 ~~~~w~~v~~--~~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~~~~~~~g~~s  287 (680)
T 1zlg_A          210 DATHWQTVAQ--TTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVT  287 (680)
T ss_pred             ccCceEEEEe--cCCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeeeeeecCCCceE
Confidence              46766543  2456799999999999999999999999 44444445555543  46889999998876  4 6   9


Q ss_pred             EEEEecCCCCCCccceEEEEEEEEc-CCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceE
Q psy535          358 FVISWQPPLERASLIQYYLIKYRTD-GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTY  436 (460)
Q Consensus       358 v~l~W~~~~~~~~~i~~y~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  436 (460)
                      +.|+|++|...+++|.+|.|+|+.. +.-.                   ......|..... ....+.++|.+|.|++.|
T Consensus       288 v~l~W~pP~~~~g~i~~Y~V~~~~~~~~~~-------------------~~~~~~~~~~~v-~~~~~~~~l~~L~p~t~Y  347 (680)
T 1zlg_A          288 VTIVWDLPEEPDIPVHHYKVFWSWMVSSKS-------------------LVPTKKKRRKTT-DGFQNSVILEKLQPDCDY  347 (680)
T ss_pred             EEEEecCCCCCCCceeEEEEEEEecccccc-------------------cCCccceEEEEE-cCCeeEEEeCCCCCCCEE
Confidence            9999999887789999999999832 1100                   001112333222 235678999999999999


Q ss_pred             EEEEEEeecCCCCCCCce---eEeec
Q psy535          437 EFQVVGKNELGDGMLSNI---VVVKT  459 (460)
Q Consensus       437 ~~~v~a~n~~G~s~~s~~---~~~~T  459 (460)
                      .|+|.|+|..|.|++|..   +.++|
T Consensus       348 ~~~V~A~n~~G~g~~S~~~~~v~~~T  373 (680)
T 1zlg_A          348 VVELQAITYWGQTRLKSAKVSLHFTS  373 (680)
T ss_pred             EEEEEEEECCCcCCCCCCceeEEEEC
Confidence            999999999999999887   77776

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=99.84  E-value=2.2e-17  Score=160.76  Aligned_cols=329  Identities=13%  Similarity=0.134  Sum_probs=185.6

Q ss_pred             CeEEEeecCCCCCeEEEEEEEcCCCC-cceeeEEEEEeeCCCceeeCCCccccc-C--CCC---eEEEEeeeeccCCCC-
Q psy535          112 GSLLFTRVNQNHQGRYTCTPYNAHGT-QGSSGQMEVLVRKPPAFTIKPEAMYQR-K--VGE---SVDMHCEAQEAEGTQ-  183 (460)
Q Consensus       112 ~~l~i~~~~~~d~G~y~C~~~~~~g~-~~~~~~~~v~v~~~p~~~~~~~~~~~~-~--~g~---~~~l~C~~~~~~~~p-  183 (460)
                      ..+.|.++.....-.|++.|.|..|. ...+....+.....+.....|...... .  ...   .+.|.+......+.+ 
T Consensus       223 ~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~~~~~~~g~~sv~l~W~pP~~~~g~i  302 (680)
T 1zlg_A          223 ERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPV  302 (680)
T ss_pred             CeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeeeeeecCCCceEEEEEecCCCCCCCce
Confidence            35788888887777888889888772 212222222221111111223222111 1  234   677777642111111 


Q ss_pred             -CCeeEEEcC-CC-ccCCc---ccEEEe--cceEEEccccceeceEEEEEEecccceeeeeeE---EEEe--cCCCCCCC
Q psy535          184 -KPTITWQRR-DG-VALPK---NRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ---LVVE--GTQPHAPY  250 (460)
Q Consensus       184 -~~~~~W~~~-~~-~~~~~---~~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~---l~v~--~~~p~~p~  250 (460)
                       ...+.|... ++ .....   ......  ...+.|.++.....+.|+..|.|..|....+..   +.+.  ..+|. |.
T Consensus       303 ~~Y~V~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~v~~~T~~~~P~-p~  381 (680)
T 1zlg_A          303 HHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNN-KE  381 (680)
T ss_pred             eEEEEEEEecccccccCCccceEEEEEcCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCCceeEEEECCCCCCC-cc
Confidence             125666521 11 01111   111122  236788999999999999999998886543222   3332  22333 44


Q ss_pred             ceee-eeecceEEE-----------EeecCCCCCCCceeeEEEEEEecCCCC-------e------------eeeeccCC
Q psy535          251 NITG-VATEFSVTL-----------EWLPGYSGGPDLKQNYVIWYREQGNKD-------W------------LPIPVTPP  299 (460)
Q Consensus       251 ~~~~-~~~~~~~~l-----------~w~~~~~~~~~~~~~~~~~~~~~~~~~-------~------------~~~~~~~~  299 (460)
                      ++.. .....++.|           .|.++...+.  +..|.+.|+..+...       |            ........
T Consensus       382 ~l~~~~~s~tsi~lp~~~~~~~~~l~W~~P~~~~~--~~~y~v~w~~~~~~~v~~Y~V~w~~~~~~~~~~~~~~~~~~~~  459 (680)
T 1zlg_A          382 QLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDG--QLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMT  459 (680)
T ss_pred             ccccccccCccccccccccCCCccccccCCcccCC--cceEEEEEeCCCCCccceEEEEEeeeecccCCCCcceeeeeec
Confidence            3332 233344544           8987753322  246777766544321       1            01111122


Q ss_pred             CCceEEEccCccCccEEEEEEEEcCCCCCCCCCc-----------------EEEEcc-----CCCCCCCcc----eEEEe
Q psy535          300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNI-----------------VVVKTK-----GPKPGPPRN----VSVTE  353 (460)
Q Consensus       300 ~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~-----------------~~~~~~-----~~~P~~p~~----~~~~~  353 (460)
                      ....+.|.+|.+++.|.|++.|.|..|.+.....                 +.....     ...+.+|.+    +.+..
T Consensus       460 ~~~~~~l~~L~p~t~Y~~~V~A~n~~G~s~~~~~~f~T~~~~~~~~~~~~~v~~~~~~~P~~~~v~~~P~~l~~~v~v~~  539 (680)
T 1zlg_A          460 HENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQD  539 (680)
T ss_pred             cCceEEecCCCCCCeEEEEEEEecCCCCCCccccceeCCCccccccCCccccccCCCCccccccccCCccccceeEEEec
Confidence            4568999999999999999999999996532111                 000000     012367888    55555


Q ss_pred             ecceEEEEecCCC-CCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCc
Q psy535          354 VNNGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTP  432 (460)
Q Consensus       354 ~~~~v~l~W~~~~-~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  432 (460)
                      ...++.|+|++|. ..++.|.+|.|+|+....-....           .+     .+.........+.+.+++.|.+|.|
T Consensus       540 ~~~ti~lsW~pP~~~~ng~I~gY~V~y~~~~~~~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~l~~L~p  603 (680)
T 1zlg_A          540 VNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQN-----------SL-----PNSIISQSQILPSDHYVLTVPNLRP  603 (680)
T ss_pred             cCceEEEEecCCCCCCCCCceeEEEEEEEccCCCccc-----------cc-----cceeeecccccCCcccEEEecCCCC
Confidence            5545999999986 34789999999998643200000           00     0000000112234678999999999


Q ss_pred             CceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          433 ATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       433 ~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ++.|.|+|.|.|..|.|++ ..+.++|+
T Consensus       604 ~t~Y~~~V~A~n~~G~G~~-~~~~~~T~  630 (680)
T 1zlg_A          604 STLYRLEVQVLTPGGEGPA-TIKTFRTP  630 (680)
T ss_pred             CceEEEEEEEEcCCCcCCC-cceEEECC
Confidence            9999999999999999988 77777774

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.84  E-value=7.7e-18  Score=152.89  Aligned_cols=294  Identities=16%  Similarity=0.181  Sum_probs=192.2

Q ss_pred             CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe-eCCCceeeCCCccc-ccCCCCeEEEEeeeeccCCCC--CCee
Q psy535          112 GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV-RKPPAFTIKPEAMY-QRKVGESVDMHCEAQEAEGTQ--KPTI  187 (460)
Q Consensus       112 ~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v-~~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~~~~p--~~~~  187 (460)
                      ..+.|.++.....-.|+..|.|..|....   ..+.. ...|    .|.... .......+.|.+...  .+.+  ...+
T Consensus        59 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~---~~~~~~~~~p----~p~~l~~~~~~~~si~l~W~~~--~~~~i~~Y~v  129 (375)
T 3t1w_A           59 SSCTFDNLSPGLEYNVSVYTVKDDKESVP---ISDTIIPEVP----QLTDLSFVDITDSSIGLRWTPL--NSSTIIGYRI  129 (375)
T ss_dssp             CEEEECCCCTTCCEEEEEEEEETTEECCC---EEEEECCCCC----CCSCCEEECCCSSEEEEECCCC--CCTTEEEEEE
T ss_pred             cEEEEcCCcCCCEEEEEEEEEcCCCCCCc---EEeeEcCCCC----CCceEEEEecCCCeEEEEEECC--CCCCceEEEE
Confidence            45788888877777777778776654322   22222 1222    122221 222445777777652  1111  1255


Q ss_pred             EEEcCCCccCCcccEEE--ecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-eeecceEEEE
Q psy535          188 TWQRRDGVALPKNRVKI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLE  264 (460)
Q Consensus       188 ~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~  264 (460)
                      .|...+.. ........  ....+.+.++.....+.|++.|.|..|....... .... .+.+|..+.. .....++.|+
T Consensus       130 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~-~~~t-~~~~p~~l~~~~~~~~si~l~  206 (375)
T 3t1w_A          130 TVVAAGEG-IPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTL-TQQT-AVPPPTDLRFTNIGPDTMRVT  206 (375)
T ss_dssp             EEEESSSC-CSCEEEEECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEEE-EEEC-CCCCCEEEEEESCCSSCEEEE
T ss_pred             EEEECCCC-CceeEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCeee-eeec-CCCCCceeEEEecccCEEEEE
Confidence            56543321 11111111  2346888999999889999999998886554442 2222 3346666654 3567899999


Q ss_pred             eecCCCCCCCceeeEEEEEEecCC-CCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCC
Q psy535          265 WLPGYSGGPDLKQNYVIWYREQGN-KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKP  343 (460)
Q Consensus       265 w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P  343 (460)
                      |.++..  . .+..|.+.++..+. ..+...... .....+.+.+|.++..|.|++.|.|..|.+..+. ..+.+   .|
T Consensus       207 W~~p~~--~-~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~-~~~~t---~p  278 (375)
T 3t1w_A          207 WAPPPS--I-DLTNFLVRYSPVKNEEDVAELSIS-PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR-GRQKT---GL  278 (375)
T ss_dssp             EECCSS--C-CCCEEEEEEEEGGGTTCCEEEEEC-TTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEEC---CC
T ss_pred             EcCCCC--C-CccEEEEEEEeCCCCCCcEEEEcC-CCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCcee-eEEec---CC
Confidence            998632  2 24789998887653 344444332 2558899999999999999999999998775432 33332   47


Q ss_pred             CCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535          344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS  422 (460)
Q Consensus       344 ~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (460)
                      .+|.++.+.... +++.|+|++|   .+.+.+|.|+|+..+...                      .....   ......
T Consensus       279 ~~P~~l~~~~~~~~sv~l~W~~p---~~~~~~Y~v~~~~~~~~~----------------------~~~~~---~~~~~~  330 (375)
T 3t1w_A          279 DSPTGIDFSDITANSFTVHWIAP---RATITGYRIRHHPEHFSG----------------------RPRED---RVPHSR  330 (375)
T ss_dssp             CCCEEEEEESCCSSCEEEEEECC---SSCCSEEEEEEEETTCCS----------------------SCEEE---EEETTC
T ss_pred             CCCCccEeeeccCCEEEEEECCC---CcceeeEEEEEEECCCCC----------------------cceeE---EcCCCc
Confidence            889999998766 6999999998   377999999999865300                      00001   112457


Q ss_pred             ceEEECCCCcCceEEEEEEEeecCCCCCCCc
Q psy535          423 TQITINRLTPATTYEFQVVGKNELGDGMLSN  453 (460)
Q Consensus       423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~  453 (460)
                      +.+.|.+|.|++.|.|+|+|.|..|.|++..
T Consensus       331 ~~~~i~~L~p~t~Y~~~V~A~~~~G~s~p~s  361 (375)
T 3t1w_A          331 NSITLTNLTPGTEYVVSIVALNGREESPLLI  361 (375)
T ss_dssp             CEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             cEEEECCCCCCCEEEEEEEEECCCCCCCcee
Confidence            7899999999999999999999999998764

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.84  E-value=8.3e-21  Score=177.14  Aligned_cols=207  Identities=15%  Similarity=0.194  Sum_probs=130.4

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe-----------------cCCee-EEcceeee-ecceeeEEEEEE
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE-----------------FPAKV-TFTPTVQY-LPFRLQGVVQCH   79 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~-----------------~~p~~-~~~~~~~~-~~~g~~~~l~C~   79 (460)
                      .|.|.++..+| |.|+|.|.|..+.. .....|.+.                 .+|.+ ...|.... +.+|++++|.|.
T Consensus       195 ~L~i~~~~~~d-G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~  272 (457)
T 1hzh_H          195 VVTVPSSSLGT-QTYICNVNHKPSNT-KVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCV  272 (457)
T ss_dssp             EEEECSGGGGT-SCCEEEEEEGGGTE-EEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEE
T ss_pred             EEEecccccCC-ceEEEEEEeCCCCc-ceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEE
Confidence            69999999999 99999999976652 222233221                 13444 33333222 567999999999


Q ss_pred             EecCCCC---CeEEEeeCCeecCccccccEEEeecCeEEEee---cCCCC---CeEEEEEEEcCCCCcceeeEEEE--Ee
Q psy535           80 IKANPTF---QYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR---VNQNH---QGRYTCTPYNAHGTQGSSGQMEV--LV  148 (460)
Q Consensus        80 ~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~~d---~G~y~C~~~~~~g~~~~~~~~~v--~v  148 (460)
                      +.+.+++   ..|+|+|++..+............++.|.+..   +...|   +|.|+|.|.|..+.......+.+  .+
T Consensus       273 ~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~  352 (457)
T 1hzh_H          273 VVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQ  352 (457)
T ss_dssp             EECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCC
T ss_pred             EEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCC
Confidence            9987654   37999999988753222222233455666553   33555   99999999987655433433433  34


Q ss_pred             eCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEEcCCCccCCccc---EE-Eecc------eEEEccccc
Q psy535          149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQRRDGVALPKNR---VK-IVGG------NITIEGLRR  216 (460)
Q Consensus       149 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~~~~~~~~---~~-~~~~------~l~i~~~~~  216 (460)
                      ..+|.+.+.+.....+..|+ +.|.|.+   .|.++  +.+.|+++ +..+....   .. ..++      .|.+.....
T Consensus       353 ~~~P~v~~~~~~~~~~~~~~-~~l~C~~---~g~~p~~~~v~W~k~-g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~  427 (457)
T 1hzh_H          353 PREPQVYTLPPSRDELTKNQ-VSLTCLV---KGFYPSDIAVEWESN-GQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRW  427 (457)
T ss_dssp             CBCCEEEEECCCGGGGGSSE-EEEEEEE---EEEBSSCCEEEEEET-TEECCCEEECCCEECTTSCEEEEEEEEEEHHHH
T ss_pred             CCCCeEEEECCCccccCCCc-EEEEEEE---EeEECCCCEEEEEEC-CEECcceeecCceeCCCCCEEEEEEEEEChHHc
Confidence            56787776654433445555 9999998   56433  39999995 44443211   11 1122      244444444


Q ss_pred             eeceEEEEEEecccce
Q psy535          217 VDFGYYECVVSNEVAT  232 (460)
Q Consensus       217 ~~~g~y~C~a~n~~g~  232 (460)
                      .|.|.|+|.|.|....
T Consensus       428 ~~~g~YtC~a~n~~l~  443 (457)
T 1hzh_H          428 QQGNVFSCSVMHEALH  443 (457)
T ss_dssp             HTTCCEEEEEECTTSG
T ss_pred             cCCCeEEEEEEECCCC
Confidence            6789999999997543

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.84  E-value=1.1e-20  Score=151.43  Aligned_cols=158  Identities=13%  Similarity=0.166  Sum_probs=113.1

Q ss_pred             eeecceeeEEEEEEEec-CCCCCeEEEeeCCeecC--------ccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           66 QYLPFRLQGVVQCHIKA-NPTFQYVTWTKDKRLLE--------PYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~-~~~~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      ..+.+|++++|.|...+ ..+.+.|.|+|++..+.        .....++.+..+++|.|.+++.+|+|.|+|.|.|..|
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g   85 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   85 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCC
Confidence            45678999999994322 22334799999986542        1124566667788899999999999999999999888


Q ss_pred             CcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccc
Q psy535          137 TQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRR  216 (460)
Q Consensus       137 ~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~  216 (460)
                      ....+..+.|.|..++.   .|.   ....+..++|.|.+   .+.|.|.+.|++++ ..+.      ....+.|..+..
T Consensus        86 ~~~~~~~~~l~V~~~~~---~p~---i~~~~~~v~L~C~~---~g~p~p~i~W~~~g-~~l~------~~~~~~i~~~~~  149 (176)
T 1hng_A           86 TRILNKALDLRILEMVS---KPM---IYWECSNATLTCEV---LEGTDVELKLYQGK-EHLR------SLRQKTMSYQWT  149 (176)
T ss_dssp             CEEEEEEEEEEEECCCC---CCE---EEEETTTTEEEEEC---SSCSSCEEEEEETT-EEEE------EESSSEEEEECS
T ss_pred             CEEEEEEEEEEEeCCCC---CCE---EEecCCcEEEEEEe---cCCCCcEEEEEECC-EECC------CCCcEEEEEEEc
Confidence            76445566676665432   111   11224469999998   78888999999944 3322      122345557778


Q ss_pred             eeceEEEEEEecccceeeeeeEE
Q psy535          217 VDFGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       217 ~~~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      .|.|.|+|.|.|..|.......|
T Consensus       150 ~d~G~Y~C~a~N~~g~~~~~~~l  172 (176)
T 1hng_A          150 NLRAPFKCKAVNRVSQESEMEVV  172 (176)
T ss_dssp             CCSSCEEEEEEETTEEEEEEECC
T ss_pred             cCCeEEEEEEEecCCCceecccc
Confidence            99999999999999987776554

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.83  E-value=1.2e-19  Score=169.93  Aligned_cols=208  Identities=14%  Similarity=0.167  Sum_probs=136.0

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe------------------cCCee-EEcceeeeecceeeEEEEEE
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE------------------FPAKV-TFTPTVQYLPFRLQGVVQCH   79 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~------------------~~p~~-~~~~~~~~~~~g~~~~l~C~   79 (460)
                      .|.|.++..+|+|.|+|.|.|..+......+.|.|.                  .+|.+ ...|....+.+|++++|.|.
T Consensus       191 ~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~  270 (475)
T 1iga_A          191 QLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCT  270 (475)
T ss_pred             EEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEE
Confidence            588999999999999999999886432333333331                  23444 23333344578999999999


Q ss_pred             EecCCC--CCeEEEeeCCeecCccccccEEE------eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE-EeeC
Q psy535           80 IKANPT--FQYVTWTKDKRLLEPYQTKDIVV------MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV-LVRK  150 (460)
Q Consensus        80 ~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v-~v~~  150 (460)
                      +.+.++  +..|+| ++ ..+..........      ...+.|.|.++..+|+|.|+|.|.|..+.......+.+ .+..
T Consensus       271 ~~g~~p~~~~~i~W-~~-~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~  348 (475)
T 1iga_A          271 LTGLRDASGVTFTW-TP-SSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTF  348 (475)
T ss_pred             EEcccCCCceEEEE-CC-CCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCC
Confidence            998754  248999 44 3332111111111      13346999999999999999999998887544443332 2356


Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCC-C-CCeeEEEcCCCccCCcccE-----E-E---e------cceEEEcc
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-Q-KPTITWQRRDGVALPKNRV-----K-I---V------GGNITIEG  213 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p-~~~~~W~~~~~~~~~~~~~-----~-~---~------~~~l~i~~  213 (460)
                      +|.+.+.+.....+..|+.+.|.|.+   .+. | .+.+.|+++ +..+.....     . .   .      ...|.|..
T Consensus       349 ~P~v~~~~~~~~~v~~g~~~~L~C~~---~g~~P~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~  424 (475)
T 1iga_A          349 RPEVHLLPPPSEELALNELVTLTCLA---RGFSPKDVLVRWLQG-SQELPREKYLTWASRQEPSQGTTTFAVTSILRVAA  424 (475)
T ss_pred             CCeEEEECCChHHhccCCceEEEEEE---eeeECCCCEEEEEEC-CEECCCCceeecccccccCCCCCcEEEEEEEEECh
Confidence            78776665443346789999999998   564 3 359999995 444432210     0 1   1      12456666


Q ss_pred             ccceeceEEEEEEecccce
Q psy535          214 LRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       214 ~~~~~~g~y~C~a~n~~g~  232 (460)
                      ....+.|.|+|.|.|....
T Consensus       425 ~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          425 EDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             HHhcCCCEEEEEEEcCCCC
Confidence            6667889999999987544

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.83  E-value=5.2e-19  Score=153.81  Aligned_cols=247  Identities=16%  Similarity=0.171  Sum_probs=148.5

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                      .+..|++++|.|.+.   . +. .+.|.+++.....     ..+++|.|.++...|+|.|+|.+   .|.......+.|.
T Consensus        17 ~~~~G~~v~l~C~~~---~-~~-~i~W~~~~~~~~~-----~~~~~L~i~~~~~~d~G~YtC~~---~~~~~~~~~l~v~   83 (306)
T 3d85_D           17 PDAPGEMVVLTCDTP---E-ED-GITWTLDQSSEVL-----GSGKTLTIQVKEFGDAGQYTCHK---GGEVLSHSLLLLH   83 (306)
T ss_dssp             SSCCCEEEEEECSSS---C-CS-SCEEEETTCCCCC-----EESSEEEEEECSGGGCEEEEEEE---TTEEEEEEEEEEE
T ss_pred             cCccCCcEEEECCCC---C-CC-cCEEEECCccccC-----CCCCEEEEEecCcCCCceEEEee---CCcccceEEEEEE
Confidence            467899999999973   2 22 7999996553322     25678999999999999999999   3555544444443


Q ss_pred             c------------CCCCC--CCceeeeee--cceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceE--
Q psy535          243 G------------TQPHA--PYNITGVAT--EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI--  304 (460)
Q Consensus       243 ~------------~~p~~--p~~~~~~~~--~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  304 (460)
                      .            .++.+  +..+.+...  ...++++|.++.....  ...|... +......+............+  
T Consensus        84 ~~~~~~~~t~i~~~~~~pp~~~~lsC~~~~~~~~~~C~W~pg~~~~l--~~~~~~~-r~~~~~~~~~C~~~~~~~~~c~v  160 (306)
T 3d85_D           84 KKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDL--TFSVKSS-RGSSDPQGVTCGAATLSAERVRG  160 (306)
T ss_dssp             EEETTEECCCSSCCCC---CCCCCEEEBSSSSSEEEEEEEESCCSSE--EEEEEEE-ECSSSCEEEEECCCEEEEEEEC-
T ss_pred             eccCCcceeeeecccCCCCCCCcceEEcCCcccCcEEEecCCCCCce--eEEEEEE-ecCCCCcceECCCCCCCccceee
Confidence            2            11222  224444322  2389999998765332  2233322 221111122111000000111  


Q ss_pred             -----------EEccCccC----ccEEEEEEEEcCCCCCCCCCcEEEEc-cCCCCCCCcceEEEeec--ceEEEEecCCC
Q psy535          305 -----------TINRLTPA----TTYEFQVVGKNELGDGMLSNIVVVKT-KGPKPGPPRNVSVTEVN--NGFVISWQPPL  366 (460)
Q Consensus       305 -----------~i~~l~~~----~~~~~~~~a~n~~G~~~~s~~~~~~~-~~~~P~~p~~~~~~~~~--~~v~l~W~~~~  366 (460)
                                 ....+.+.    ..|.|+|.|.|.+|....+  ..+.. ....|.||.++.+....  ..+.|+|++|.
T Consensus       161 ~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~--~~f~~~~iVkPdPP~~l~~~~~~~~~~l~vsW~~P~  238 (306)
T 3d85_D          161 DNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYT--SSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPD  238 (306)
T ss_dssp             -CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEE--EEECHHHHBCCCCCEEEEEEEC----CEEEEEECCT
T ss_pred             cCccccceeeeeeccccccccccEEEEEEEEEEccCCccccc--eEEEehhcEecCCCceEEEEEecCCCcEEEEEcCCC
Confidence                       12233333    4799999999999854333  33321 12348999999998743  58999999997


Q ss_pred             CCCccc----eEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEE
Q psy535          367 ERASLI----QYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG  442 (460)
Q Consensus       367 ~~~~~i----~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  442 (460)
                      +.+.+.    +.|+|+|+..+.+.                         |....  ....+++.|   .+++.|.|+|+|
T Consensus       239 ~~~~p~~~~~L~Y~vryr~~~~~~-------------------------~~~~~--~~~~ts~~l---~~~~~Y~vqVRa  288 (306)
T 3d85_D          239 TWSTPHSYFSLTFCVQVQGKSKRE-------------------------KKDRV--FTDKTSATV---ICRKNASISVRA  288 (306)
T ss_dssp             TSCSCTTTSCEEEEEEEECC-------------------------------CEE--EESSSEEEE---CCCSSCEEEEEE
T ss_pred             CCcCCCceeeEEEEEEEEECCCCc-------------------------cEEEe--eccccEEEE---eCCCeEEEEEEe
Confidence            655433    79999999765311                         11111  123455665   459999999999


Q ss_pred             eecCCCCCCCceeEe
Q psy535          443 KNELGDGMLSNIVVV  457 (460)
Q Consensus       443 ~n~~G~s~~s~~~~~  457 (460)
                      .|..|.|.||++...
T Consensus       289 ~~~~~~G~WSeWS~~  303 (306)
T 3d85_D          289 QDRYYSSSWSEWASV  303 (306)
T ss_dssp             EESSSCCCCCCCEEE
T ss_pred             ccCCCCCCCCCCCCC
Confidence            999999999998654

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.83  E-value=4.7e-19  Score=145.60  Aligned_cols=173  Identities=19%  Similarity=0.311  Sum_probs=127.5

Q ss_pred             CCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCC
Q psy535          248 APYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG  326 (460)
Q Consensus       248 ~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G  326 (460)
                      +|.++.. .....++.|+|.++..  . .+.+|.+.|+..+...+............+.|.+|.+++.|.|++.|.|..|
T Consensus        25 ~P~~l~~~~~~~~sv~lsW~~p~~--~-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g  101 (203)
T 2gee_A           25 QPTDLSFVDITDSSIGLRWTPLNS--S-TIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGG  101 (203)
T ss_dssp             CCEEEEEECCTTTCEEEEEECCSS--S-SCCEEEEEEEESSSSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEESSSC
T ss_pred             CCCccEEEecCCCEEEEEecCCCC--C-CccEEEEEEEECCCCCCceeEEcCCCccEEEeCCCCCCCEEEEEEEEEeCCC
Confidence            5666654 4457799999998752  2 3479999988766543332222223567899999999999999999999887


Q ss_pred             CCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccce
Q psy535          327 DGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYR  405 (460)
Q Consensus       327 ~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (460)
                      .+.   ...+.+...+| +|.++++...+ +++.|+|++|.  ++.+.+|.|+|+..+...                   
T Consensus       102 ~s~---~~~~~t~~~~p-~P~~l~~~~~~~~sv~l~W~~p~--~~~i~~Y~v~~~~~~~~~-------------------  156 (203)
T 2gee_A          102 EST---PTTLTQQTAVP-PPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRYSPVKNEE-------------------  156 (203)
T ss_dssp             BCC---CEEEEEECCCC-CCEEEEEEEEETTEEEEEEECCS--SCCCSEEEEEEEETTCGG-------------------
T ss_pred             ccc---cEeeeecCCCc-CCCceEEEEcCCCEEEEEEcCCC--CCCccEEEEEEEECCCCC-------------------
Confidence            654   44555555545 89999987766 69999999995  458999999999754300                   


Q ss_pred             ecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCce
Q psy535          406 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI  454 (460)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~  454 (460)
                           .|... ......+.+.|.+|.|++.|.|+|+|.|..|.|+++..
T Consensus       157 -----~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~~  199 (203)
T 2gee_A          157 -----DVAEL-SISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG  199 (203)
T ss_dssp             -----GCEEE-EECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEE
T ss_pred             -----ccEEE-EcCCCcCEEEECCCCCCCEEEEEEEEecCCCcCCCeee
Confidence                 01111 11356789999999999999999999999999987643

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.83  E-value=4.1e-19  Score=159.05  Aligned_cols=165  Identities=13%  Similarity=0.188  Sum_probs=109.5

Q ss_pred             cceeeeecceeeEEEEEEEecCC-CCCeEEEeeC--CeecC---------------ccccccEEEeec-----CeEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRLLE---------------PYQTKDIVVMQN-----GSLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~-----~~l~i~~  118 (460)
                      .|....+.+|++++|.|.+.+.+ +.+.|.|+|+  +..+.               .....++.+..+     .+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (344)
T 1za6_B            6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS   85 (344)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence            34456788999999999998864 2347999996  33221               012345555432     3799999


Q ss_pred             cCCCCCeEEEEEEEcCCCCcceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CC-CeeEEEcC
Q psy535          119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QK-PTITWQRR  192 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~-~~~~W~~~  192 (460)
                      ++.+|+|.|+|.+.|..+.....  ..|.|.    .+|.+...+... .+..|+.++|.|.+   .|. |. +.+.|+++
T Consensus        86 v~~~D~G~Y~C~~~n~~~~~~~~--~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~---~g~~P~~~~v~W~k~  159 (344)
T 1za6_B           86 LRSEDTAVYFCTRSLNMAYWGQG--TLVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLV---KDYFPEPVTVSWNSG  159 (344)
T ss_dssp             CCGGGCEEEEEEETTTTCEECCC--EEEEECSSCCBCCEEEEECCSC-TTTSSSEEEEEEEE---EEEBSSCCCEEETTT
T ss_pred             CCcccCEEEEEEEecCcceecCc--EEEEEecCCCCCCeEEEccccc-cccCCCcEEEEEEE---eeEECCCeEEEEecC
Confidence            99999999999998854332223  344444    345444333222 46789999999999   454 64 79999985


Q ss_pred             CCccC---------CcccEEEecceEEEccccceeceEEEEEEecccceee
Q psy535          193 DGVAL---------PKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV  234 (460)
Q Consensus       193 ~~~~~---------~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  234 (460)
                      +....         ....+. ....|.|..+...| |.|+|.|.|..+...
T Consensus       160 g~~~~~~~~~~~~~~~~~~~-~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~  208 (344)
T 1za6_B          160 ALTSGVHTFPAVLQSSGLYS-LSSVVTVPSSSLGT-QTYICNVNHKPSNTK  208 (344)
T ss_dssp             TBCTTEEECCCEECTTSCEE-EEEEEEEETTHHHH-BCEEEEEEEGGGTEE
T ss_pred             CccCceeECCCeECCCCCEE-EEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence            43210         011111 22368888888878 999999999887643

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.83  E-value=7.2e-20  Score=149.16  Aligned_cols=138  Identities=17%  Similarity=0.337  Sum_probs=110.8

Q ss_pred             ccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCC-cceeeeEEEEecCCeeEEcce--eeeecceeeEEEEEEEecCC
Q psy535            8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGE-PQAAQAYLNVEFPAKVTFTPT--VQYLPFRLQGVVQCHIKANP   84 (460)
Q Consensus         8 ~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~   84 (460)
                      .+.|+.+..+++|.|.+++.+|+|.|+|.+.+..+. .....+.|.|..+|.+...+.  ...+.+|+.+.|.|.+.+.|
T Consensus        47 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p  126 (189)
T 2v5t_A           47 SDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSP  126 (189)
T ss_dssp             CCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEES
T ss_pred             cCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCC
Confidence            568888888899999999999999999999998744 334567777877777765443  45677899999999999987


Q ss_pred             CCCeEEEeeCCeecCccccccEEE-eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535           85 TFQYVTWTKDKRLLEPYQTKDIVV-MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus        85 ~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      .+ .+.|+++|..+...  .+... ..++.|.|.++..+|+|.|+|.|.|..|....+..+.|.|
T Consensus       127 ~~-~v~W~~~g~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          127 EP-AISWFRNGKLIEEN--EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  188 (189)
T ss_dssp             CC-EEEEEETTEECCCS--SSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CC-eEEEEECCEECcCC--CcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence            76 79999999988642  23332 2346799999999999999999999999887777766655

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.83  E-value=1.6e-19  Score=149.93  Aligned_cols=143  Identities=24%  Similarity=0.442  Sum_probs=113.5

Q ss_pred             cCcccceEEEee--CC--eEEEeecCC-CCCeeEEEEEEeCCCCcceeeeEEEEecC-------CeeEEcceeeeeccee
Q psy535            5 VGSLETRVVIKK--DG--TLVINPVGS-DDSGLYMCEVSNGIGEPQAAQAYLNVEFP-------AKVTFTPTVQYLPFRL   72 (460)
Q Consensus         5 ~~~~~~r~~~~~--~~--~L~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~   72 (460)
                      +...+.|+.+..  +|  +|.|.+++. +|+|.|+|.|.|..|...+..+.|.|..+       |.+...+....+.+|+
T Consensus        47 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~  126 (212)
T 2yd1_A           47 VSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH  126 (212)
T ss_dssp             CCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTC
T ss_pred             CCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCC
Confidence            344667777754  33  899999999 99999999999998874477888998765       6777777778888999


Q ss_pred             eEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCC
Q psy535           73 QGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP  151 (460)
Q Consensus        73 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~  151 (460)
                      .++|.|.+.+.|.+ .+.|++++..+... ..++ ...++.|.|.++..+|+|.|+|.|.|..|..... .+.|.|..+
T Consensus       127 ~v~l~C~~~g~p~p-~i~W~~~~~~~~~~-~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~-~~~l~V~~~  201 (212)
T 2yd1_A          127 TVLMTCKAIGNPTP-NIYWIKNQTKVDMS-NPRY-SLKDGFLQIENSREEDQGKYECVAENSMGTEHSK-ATNLYVKVR  201 (212)
T ss_dssp             CEEECCEEECSSCC-EEEEEETTEECCTT-STTE-EEETTEEEECSCCGGGCEEEEEEEEETTEEEECC-CEEEEEEC-
T ss_pred             eEEEEEEeccCCCC-eEEEEECCeEcccC-CCeE-EccCCeEEEccCChhhCEEEEEEeecCCCceeEE-EEEEEEEec
Confidence            99999999998776 79999999988642 2333 3457799999999999999999999999876432 345555544

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.83  E-value=1.5e-19  Score=147.31  Aligned_cols=127  Identities=20%  Similarity=0.277  Sum_probs=105.0

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CC
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DK   95 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~   95 (460)
                      ++|.|.+++.+|+|.|+|.|.|. +.. +..+.|.|..+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|++  ++
T Consensus        56 ~~L~i~~~~~~d~G~Y~C~~~n~-~~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~g  132 (190)
T 2wv3_A           56 MEYRINKPRAEDSGEYHCVYHFV-SAP-KANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHP-EWMWRKKENG  132 (190)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEET-TEE-EEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCC-EEEEEEEETT
T ss_pred             EEEEEecCCcccCEEEEEEEEeC-Ccc-cccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCC-ceEEEEcCCC
Confidence            47999999999999999999998 554 78899999999999888888889999999999999998876 899999  77


Q ss_pred             eecCcc-ccccEEEeecC---eEEEeecC-CCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535           96 RLLEPY-QTKDIVVMQNG---SLLFTRVN-QNHQGRYTCTPYNAHGTQGSSGQMEVL  147 (460)
Q Consensus        96 ~~~~~~-~~~~~~~~~~~---~l~i~~~~-~~d~G~y~C~~~~~~g~~~~~~~~~v~  147 (460)
                      ..+... ...++.+..++   .|.|.++. .+|+|.|+|.|.|..|....+..+.|.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          133 VFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            766421 23444444433   69999999 799999999999999987666666554

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.82  E-value=3.1e-19  Score=144.62  Aligned_cols=159  Identities=14%  Similarity=0.210  Sum_probs=117.9

Q ss_pred             eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCc------------cccccEEEe----e--cCeEEEeecCCCCCeE
Q psy535           65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEP------------YQTKDIVVM----Q--NGSLLFTRVNQNHQGR  126 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~------------~~~~~~~~~----~--~~~l~i~~~~~~d~G~  126 (460)
                      ...+.+|++++|.|.+.+.|.+ .+.|++++..+..            ....+....    .  ..+|.|.+++.+|+|.
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~   82 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   82 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCC-CEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCce-EEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence            3567789999999999877655 7999998863211            012223222    1  2349999999999999


Q ss_pred             EEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEec
Q psy535          127 YTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG  206 (460)
Q Consensus       127 y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  206 (460)
                      |+|.+.+..+      .+.|.|..   +...+ .. .+..|+.++|.|.+   .+.|.+.+.|+++++..      ....
T Consensus        83 Y~C~~~~~~~------~~~l~V~~---~~~~~-~~-~v~~g~~~~l~C~~---~~~p~~~v~W~~~~~~~------~~~~  142 (184)
T 2ny1_B           83 YICEVEDQKE------EVQLLVFG---LTANS-DT-HLLQGQSLTLTLES---PPGSSPSVQCRSPRGKN------IQGG  142 (184)
T ss_dssp             EEEEETTEEE------EEEEEEEE---EEESS-CS-EEETTCCEEEEEEC---CTTCCCEEEEECTTSCE------EEES
T ss_pred             EEEEEEcCCC------cEEEEEEE---ecCCC-Cc-eeecCCCEEEEEEc---CCCCCCEEEEEeCCCcc------ccCc
Confidence            9999987543      33444432   22222 22 57889999999998   67899999999854432      3466


Q ss_pred             ceEEEccccceeceEEEEEEecccceeeeeeEEEEecC
Q psy535          207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT  244 (460)
Q Consensus       207 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~  244 (460)
                      ..|.|.++...|.|.|+|.|.|..+.......|.|.+.
T Consensus       143 ~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~  180 (184)
T 2ny1_B          143 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF  180 (184)
T ss_dssp             SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             eEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEec
Confidence            78999999999999999999999999888888888763

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.82  E-value=1.5e-19  Score=148.36  Aligned_cols=171  Identities=12%  Similarity=0.132  Sum_probs=114.5

Q ss_pred             Ecceee-eecceeeEEEEEEEecCCCCCeEEEeeCC-eecCccccccEE-EeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           61 FTPTVQ-YLPFRLQGVVQCHIKANPTFQYVTWTKDK-RLLEPYQTKDIV-VMQNGSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        61 ~~~~~~-~~~~g~~~~l~C~~~~~~~~~~v~W~~~~-~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      +.|... .+.+|++++|.|.+.|.|.+ .+.|+++. .++.    .... ....+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         5 i~p~~~~~~~~G~~v~L~C~~~g~P~p-~i~W~~~~~~~~~----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~   79 (202)
T 1vca_A            5 TTPESRYLAQIGDSVSLTCSTTGCESP-FFSWRTQIDSPLN----GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK   79 (202)
T ss_dssp             EESSSEEEEETTSCEEEEEEEESCSSC-EEEEEETTCCCCS----SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE
T ss_pred             ECCCCcEEEcCCCcEEEEEeecCCCCC-eEEEECCCCCCcc----ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCce
Confidence            344443 34489999999999998776 69999843 2221    1111 112346999999999999999999998765


Q ss_pred             cceeeEEEEEeeCCCce-eeCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEEcCCCccCCcccE---------EEe
Q psy535          138 QGSSGQMEVLVRKPPAF-TIKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQRRDGVALPKNRV---------KIV  205 (460)
Q Consensus       138 ~~~~~~~~v~v~~~p~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~~~~~~~~~~~~---------~~~  205 (460)
                        .+..+.|.|..+|.. .+.+.  ..+..|+.++|.|.+.  .+.|.  +.+.|++++. .+.....         ...
T Consensus        80 --~~~~~~l~V~~~p~~~~~~~~--~~~~~G~~~~L~C~~~--~~~p~~~~~i~W~k~~~-~l~~~~~~~~~~~~~~~~~  152 (202)
T 1vca_A           80 --LEKGIQVEIYSFPKDPEIHLS--GPLEAGKPITVKCSVA--DVYPFDRLEIDLLKGDH-LMKSQEFLEDADRKSLETK  152 (202)
T ss_dssp             --EEEEEEEEEEBCCSCCEEEES--SCEETTSCEEEEEEEE--EEBSGGGEEEEEEETTE-EEEEEECCSCCSSCCCEEE
T ss_pred             --EeeEEEEEEEeCCCCCEeCCc--eEEcCCCCEEEEEEEC--CcCCCCCeEEEEEeCCe-ECcccccccccCcCcceEE
Confidence              455667777766643 33333  2578999999999983  23343  4799999543 3321111         112


Q ss_pred             cceEEEccccceeceEEEEEEecccce-------eeeeeEEEEec
Q psy535          206 GGNITIEGLRRVDFGYYECVVSNEVAT-------IVQAAQLVVEG  243 (460)
Q Consensus       206 ~~~l~i~~~~~~~~g~y~C~a~n~~g~-------~~~~~~l~v~~  243 (460)
                      ...|.|......|.|.|+|.|.|..+.       ...+..|.|..
T Consensus       153 ~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y  197 (202)
T 1vca_A          153 SLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYI  197 (202)
T ss_dssp             EEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEEC
T ss_pred             EEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEec
Confidence            234677888888899999999998875       23455666653

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.82  E-value=3.5e-19  Score=153.79  Aligned_cols=181  Identities=20%  Similarity=0.351  Sum_probs=125.7

Q ss_pred             eeEEcceeeeecceeeEEEEEEEe---cCCCCCeEEEeeCCeecCcc----------------ccccEEEe-----ecCe
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIK---ANPTFQYVTWTKDKRLLEPY----------------QTKDIVVM-----QNGS  113 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~---~~~~~~~v~W~~~~~~~~~~----------------~~~~~~~~-----~~~~  113 (460)
                      .+...+....+.+|++++|.|.+.   +.+. +.|.|++++......                ...++...     .+++
T Consensus         7 ~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHV-DRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             -----CCEEEEETTCCEEECCBCCCSSCCCE-EEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             ccccCCCceEEecCCcEEEEEEeecCCCCce-EEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            445566778889999999999987   4443 479999965432110                11333332     1267


Q ss_pred             EEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCC
Q psy535          114 LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD  193 (460)
Q Consensus       114 l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~  193 (460)
                      |.|.+++.+|+|.|+|.+.+..+.......+.|.|...     .|... .+..|+.++|.|.+....+.|.+.+.|++++
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~-----~p~~~-~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~  159 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE-----EPRDL-RVRVGDTTQMRCSIQSTEEKRVTKVNWMFSS  159 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC-----CCSEE-EEETTCCEEECCBCEESSSSCCCEEEEEEEC
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc-----CCCcc-ccccCCcEEEEEEecCCCCCCccceEEEecC
Confidence            99999999999999999998766655566666666411     22233 6789999999999843357789999999854


Q ss_pred             CccCCc----------------------ccEEE------ecceEEEccccceeceEEEEEEecccceeeeeeEEEEecCC
Q psy535          194 GVALPK----------------------NRVKI------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ  245 (460)
Q Consensus       194 ~~~~~~----------------------~~~~~------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~  245 (460)
                      +.....                      .++..      ....|.|.++...|.|.|+|.|.|..|.....+.|.|...+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~  239 (268)
T 3mj6_A          160 GSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE  239 (268)
T ss_dssp             TTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC-
T ss_pred             CCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCC
Confidence            432211                      11221      24579999999999999999999999998888888885433

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.82  E-value=1.2e-19  Score=150.26  Aligned_cols=140  Identities=18%  Similarity=0.280  Sum_probs=109.5

Q ss_pred             ccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecC---CeeEEcceeeeecceeeEEEEEEEecCC
Q psy535            8 LETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP---AKVTFTPTVQYLPFRLQGVVQCHIKANP   84 (460)
Q Consensus         8 ~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~~   84 (460)
                      ..+|+.+..+++|.|.+++.+|+|.|+|.+.+..+......+.|.|..+   |.+...+..  +.+|+++.|.|.+.+.|
T Consensus        61 ~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p  138 (208)
T 3r4d_A           61 YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG  138 (208)
T ss_dssp             CCSSEEECTTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT
T ss_pred             ccceeEEecCCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC
Confidence            5679999888999999999999999999999986554567788888765   344443333  78899999999998865


Q ss_pred             CCCeEEEeeCCeecCccccccEEEee-cCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCce
Q psy535           85 TFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAF  154 (460)
Q Consensus        85 ~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~  154 (460)
                       + .+.|++++..+..  ..++.... ++.|.|.++..+|+|.|+|.|.|..|.. .+..++|.|..+|..
T Consensus       139 -p-~i~W~~~g~~l~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~s~~~~l~v~~~~~~  204 (208)
T 3r4d_A          139 -A-NIQWLFNSQSLQL--TERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVR-RSNSIKLDIIFDPHH  204 (208)
T ss_dssp             -C-EEEEEETTEECCC--CSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCE-ECCCEEECCC-----
T ss_pred             -C-ceEEEECCEeCCC--CCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcc-cCCceeeeEEeCCcc
Confidence             3 7999999998863  23444433 3689999999999999999999999887 577888888877653

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.82  E-value=1.6e-17  Score=144.49  Aligned_cols=207  Identities=18%  Similarity=0.283  Sum_probs=154.0

Q ss_pred             ceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEe
Q psy535          207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYRE  285 (460)
Q Consensus       207 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~  285 (460)
                      ..+.|.++.....+.+++.|.|..|... ...+.+. .+|.+|.++.. .....++.|+|.++.    ..+.+|.+.++.
T Consensus        68 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~-~~~~~~~-t~p~~P~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~  141 (283)
T 1tdq_A           68 SQYSVQALRPGSRYEVSISAVRGTNESD-ASSTQFT-TEIDAPKNLRVGSRTATSLDLEWDNSE----AEAQEYKVVYST  141 (283)
T ss_dssp             SEEEECSCCTTCEEEEEEEEEETTEECC-CEEEEEE-CCCCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEE
T ss_pred             CEEEecCCCCCCEEEEEEEEECCCCCCC-CeeEEEE-CCCCCCCceEEEecCCCeEEEEecCCC----CCccEEEEEEEe
Confidence            4688999999888999999999877643 2333333 46777777664 446779999999764    234799999988


Q ss_pred             cCCCCeeeeeccCCC---CceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEE
Q psy535          286 QGNKDWLPIPVTPPG---STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVIS  361 (460)
Q Consensus       286 ~~~~~~~~~~~~~~~---~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~  361 (460)
                      .....+....... .   ...+.+.+|.+++.|.|++.|.|..|.+.   ...+..... |.+|.++.+.... +++.|+
T Consensus       142 ~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~---~~~~~~~t~-~~~P~~l~~~~~~~~sv~l~  216 (283)
T 1tdq_A          142 LAGEQYHEVLVPK-GIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSI---PATMNARTE-LDSPRDLMVTASSETSISLI  216 (283)
T ss_dssp             TTCCCCEEEEEEC-CSSSEEEEEECSCCTTCEEEEEEEEEETTEECC---CEEEEEECC-CCCCEEEEEEEECSSCEEEE
T ss_pred             CCCCcceEEECCC-CCcccceEEEecCCCCCEEEEEEEEEeCCCCCc---ceEEEecCC-CCCCCccEEeEecCCEEEEE
Confidence            7665554443322 2   67899999999999999999999988653   333333333 6688899988866 699999


Q ss_pred             ecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEE
Q psy535          362 WQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV  441 (460)
Q Consensus       362 W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  441 (460)
                      |++|   ++.+.+|.|+|+..+...                        ....   .....+.+.|.+|.|++.|.|+|+
T Consensus       217 W~~p---~~~i~~Y~v~~~~~~~~~------------------------~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~  266 (283)
T 1tdq_A          217 WTKA---SGPIDHYRITFTPSSGIS------------------------SEVT---VPRDRTSYTLTDLEPGAEYIISIT  266 (283)
T ss_dssp             EECC---CSCCSEEEEEEECSSSCC------------------------EEEE---EESSCSEEEECCCCTTCCEEEEEE
T ss_pred             EeCC---CCcccEEEEEEEcCCCCe------------------------eEEE---eCCCccEEEECCCCCCCEEEEEEE
Confidence            9997   467899999999754310                        0011   124567899999999999999999


Q ss_pred             EeecCCCCCCCce
Q psy535          442 GKNELGDGMLSNI  454 (460)
Q Consensus       442 a~n~~G~s~~s~~  454 (460)
                      |.|..|.|+++..
T Consensus       267 A~~~~g~s~~~~~  279 (283)
T 1tdq_A          267 AERGRQQSLESTV  279 (283)
T ss_dssp             EEETTEECCCEEE
T ss_pred             EEcCCCCCcceee
Confidence            9999999987754

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.82  E-value=8e-20  Score=147.92  Aligned_cols=147  Identities=13%  Similarity=0.181  Sum_probs=105.9

Q ss_pred             eecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEee-cCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR-VNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      ...+|+++.|.|.+.+ ++  .|+|+|+|..+...        .+++|.|.+ +..+|+|.|+|.|.|..|.......+.
T Consensus        10 v~~~G~~v~L~C~~~~-~~--~i~W~k~g~~l~~~--------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~   78 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE--NLKWEKNGQELPQK--------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR   78 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT--TCEEEETTEEECSC--------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCC
T ss_pred             EEeCCcEEEEEEeCCC-CC--ceEEEECCEECCCC--------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEE
Confidence            3467999999999987 43  39999999998642        345799999 999999999999999888744443333


Q ss_pred             EEeeCCCceee--------------CCC--------cccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEE
Q psy535          146 VLVRKPPAFTI--------------KPE--------AMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVK  203 (460)
Q Consensus       146 v~v~~~p~~~~--------------~~~--------~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~  203 (460)
                      |.+..++....              .+.        ....+..|+.+.|.|.+      |.|.+.|++++ ..+....  
T Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~------p~p~i~W~k~g-~~i~~~~--  149 (186)
T 1jbj_A           79 VGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL------TDKTIKWLKDG-SIISPLN--  149 (186)
T ss_dssp             CCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS------SCSCEEEEETT-EECCCSS--
T ss_pred             EecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC------CCCeEEEEECC-EECcccC--
Confidence            33322222100              000        01134489999999985      77899999954 4443221  


Q ss_pred             EecceEEEccccceeceEEEEEEeccccee
Q psy535          204 IVGGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       204 ~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      .....|.|.++...|+|.|+|.|.|..|..
T Consensus       150 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          150 ATKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            145679999999999999999999998876

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.82  E-value=3.2e-21  Score=178.69  Aligned_cols=208  Identities=13%  Similarity=0.170  Sum_probs=135.4

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe----------cC--CeeEE-cceeee-ecceeeEEEEEEEecC
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE----------FP--AKVTF-TPTVQY-LPFRLQGVVQCHIKAN   83 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~----------~~--p~~~~-~~~~~~-~~~g~~~~l~C~~~~~   83 (460)
                      +.|.|.+++.+| |.|+|.|.|..+.. .....+.+.          .+  |.+.. .|.... +.+|++++|.|.+.+.
T Consensus       180 s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~  257 (434)
T 1igy_B          180 SSVTVPSSPRPS-ETVTCNVAHPASST-KVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDI  257 (434)
T ss_dssp             EEEEEETTTTTS-SCCEEEEECTTTTC-CEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCC
T ss_pred             EEEEEcchhcCC-CcEEEEEEeCCCCc-cceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEecc
Confidence            369999999999 99999999988763 222333221          00  33333 332222 7789999999999987


Q ss_pred             CC---CCeEEEeeCCeecCccccccEEE------eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE--EeeCCC
Q psy535           84 PT---FQYVTWTKDKRLLEPYQTKDIVV------MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV--LVRKPP  152 (460)
Q Consensus        84 ~~---~~~v~W~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v--~v~~~p  152 (460)
                      ++   ++.|+|+|++..+..........      ...+.|.|.++..+|+|.|+|.|.|..|.......+.+  .+..+|
T Consensus       258 ~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P  337 (434)
T 1igy_B          258 SKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAP  337 (434)
T ss_dssp             CSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCC
T ss_pred             ccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCC
Confidence            42   34799999998764321111100      11346999999999999999999998886534344433  445678


Q ss_pred             ceeeCCCcccccCCCCeEEEEeeeeccCCC-CC-CeeEEEcCCCccCCcccE-E---Eecc------eEEEccccceece
Q psy535          153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QK-PTITWQRRDGVALPKNRV-K---IVGG------NITIEGLRRVDFG  220 (460)
Q Consensus       153 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~-~~~~W~~~~~~~~~~~~~-~---~~~~------~l~i~~~~~~~~g  220 (460)
                      .+.+.+... ....|+.++|.|.+   .|. |. +.+.|++++. .+..... .   ..++      .|.|......|.|
T Consensus       338 ~v~~~~~~~-~~~~~~~~~L~C~~---~g~~P~~~~v~W~k~g~-~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g  412 (434)
T 1igy_B          338 QVYTIPPPK-EQMAKDKVSLTCMI---TDFFPEDITVEWQSDGQ-APENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGN  412 (434)
T ss_dssp             CCEEECCCS-SSSSSSEEEEEEEE---EEEBCSCEEEEEEETTS-CCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTC
T ss_pred             EEEEECCCH-HHhcCCcEEEEEEE---EeeECCCeEEEEEECCE-ecCCceeccceeCCCCcEEEEEEEEECchhccCCC
Confidence            776665543 23457789999998   553 43 4899999554 3332111 0   1122      3555556666789


Q ss_pred             EEEEEEecccce
Q psy535          221 YYECVVSNEVAT  232 (460)
Q Consensus       221 ~y~C~a~n~~g~  232 (460)
                      .|+|.|.|....
T Consensus       413 ~YtC~a~n~~l~  424 (434)
T 1igy_B          413 TFTCSVLHEGLH  424 (434)
T ss_dssp             CEEEEEEETTSG
T ss_pred             EEEEEEEcCCCC
Confidence            999999997543

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=99.81  E-value=1.1e-18  Score=143.39  Aligned_cols=179  Identities=20%  Similarity=0.295  Sum_probs=124.4

Q ss_pred             CCCceee-eee--cceEEEEeecCCCCCCCceeeEEEEEEecCC-CCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535          248 APYNITG-VAT--EFSVTLEWLPGYSGGPDLKQNYVIWYREQGN-KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN  323 (460)
Q Consensus       248 ~p~~~~~-~~~--~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n  323 (460)
                      +|.++.. ...  ..++.|+|.++  .+. .+.+|.+.|+.... ..|...... .....+.|.+|.+++.|.|++.|.|
T Consensus         2 ~P~~l~v~~v~~~~~si~l~W~~p--~~~-~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~a~n   77 (201)
T 2ha1_A            2 GPVEVFITETPSQPNSHPIQWNAP--QPS-HISKYILRWRPKNSVGRWKEATIP-GHLNSYTIKGLKPGVVYEGQLISIQ   77 (201)
T ss_dssp             CCCEEECCSCSCCSSCEEEEEECC--SST-TCCEEEEEEEETTCSSCCEEEEEC-TTCCEEEECSCCTTEEEEEEEEEEC
T ss_pred             CceeEEEEecCCCCCEEEEEEeCC--CCC-CceEEEEEEEECCCCCceEEEecC-CCccEEEecCCCCCCEEEEEEEEEe
Confidence            3445543 223  67999999987  222 34799998887543 455555443 2567899999999999999999999


Q ss_pred             CCCCCCCCCcEEEEccCC-----------CCC-CC----cceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCee
Q psy535          324 ELGDGMLSNIVVVKTKGP-----------KPG-PP----RNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWK  386 (460)
Q Consensus       324 ~~G~~~~s~~~~~~~~~~-----------~P~-~p----~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~  386 (460)
                      ..|.+..+ .+.+.+...           .|. +|    .++.+...+ +++.|+|++|   .+.+.+|.|+|+..+.- 
T Consensus        78 ~~G~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~sv~l~W~~p---~~~i~~Y~v~~~~~~~~-  152 (201)
T 2ha1_A           78 QYGHQEVT-RFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA---SDTVSGFRVEYELSEEG-  152 (201)
T ss_dssp             TTSCEEEE-EEEEEECCCCCTTCSCCCCCSCCCCCCSCSCCSSCCCCCSCCEEEECCCS---CTTEEEEEEEEEETTTC-
T ss_pred             cccccCce-eEEEecCCCCCCcccccccCCCCCCCCccCCceEEEecCCCeEEEEEeCC---CCCccEEEEEEEECCCC-
Confidence            99987643 333333211           122 22    456776655 6999999998   45899999999964320 


Q ss_pred             eeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          387 TLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                                              .|..........+++.|.+|.|++.|.|+|+|+|..|.|++......+|
T Consensus       153 ------------------------~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~~~s~~~~tT  201 (201)
T 2ha1_A          153 ------------------------DEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT  201 (201)
T ss_dssp             ------------------------CCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSCEEEEEEEEEEC
T ss_pred             ------------------------CceeEEEcCCceeEEEeCCCCCCCEEEEEEEEEcCCCCcccEeeEeecC
Confidence                                    0101111234678999999999999999999999999998776555443

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.81  E-value=1.2e-19  Score=149.30  Aligned_cols=136  Identities=14%  Similarity=0.186  Sum_probs=98.0

Q ss_pred             CcccCcccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe---------------------c
Q psy535            2 NTKVGSLETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE---------------------F   55 (460)
Q Consensus         2 ~~~~~~~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---------------------~   55 (460)
                      |++....+.|+++..++     +|.|.+++.+|+|.|+|.|.|+  .. .....+.+.                     .
T Consensus        40 ng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng--~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (207)
T 3rbs_A           40 NEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG--KA-TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQ  116 (207)
T ss_dssp             TTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEET--TE-EEEEEEEECTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECC--Ce-EEEEEEEEEccchhhhcccccccccccccCC
Confidence            34444455666665543     6999999999999999999993  32 222333211                     2


Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEe-ecCeEEEeecCCCCCeEEEEEEEc
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      +|.|...+ ...+.+|+++.|.|.+.|. |.+ .|+|+|+|.++...  .++... ...+|.|.++..+|+|.|+|.|.|
T Consensus       117 ~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p-~i~W~k~g~~l~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  192 (207)
T 3rbs_A          117 GPHFVEYL-SWEVTGECNVLLKCKVANIKKET-HIVWYKDEREISVD--EKHDFKDGICTLLITEFSKKDAGIYEVILKD  192 (207)
T ss_dssp             SSEEEEEE-EEEEETTTEEEEEEEEESCCTTC-EEEEEETTEEECCC--CCCCCSSEEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             CCceEecC-CcEEcCCCcEEEEEEEeCCCCCC-EEEEEECCEECCCC--CceEcCCCEEEEEECCCCcccCEEEEEEEEc
Confidence            56665554 4678889999999999998 555 89999999998642  222211 223699999999999999999999


Q ss_pred             CCCCcceeeEE
Q psy535          134 AHGTQGSSGQM  144 (460)
Q Consensus       134 ~~g~~~~~~~~  144 (460)
                      ..|....+..|
T Consensus       193 ~~G~~~~~~~L  203 (207)
T 3rbs_A          193 DRGKDKSRLKL  203 (207)
T ss_dssp             TTEEEEEEEEE
T ss_pred             CCCEEEEEEEE
Confidence            99986555443

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.81  E-value=1.6e-19  Score=149.87  Aligned_cols=150  Identities=17%  Similarity=0.169  Sum_probs=101.9

Q ss_pred             cccCcccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec--CCeeEEccee-eeecceeeEEEEEE
Q psy535            3 TKVGSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF--PAKVTFTPTV-QYLPFRLQGVVQCH   79 (460)
Q Consensus         3 ~~~~~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~-~~~~~g~~~~l~C~   79 (460)
                      +.+...+.++.+..++.|.|.+++.+|+|.|+|.|.|..+...+..+.|.|..  +|.+...+.. ..+.+|++++|.|.
T Consensus        49 g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~  128 (213)
T 2x1w_L           49 KRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT  128 (213)
T ss_dssp             EEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEE
T ss_pred             CccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEE
Confidence            44444556667666779999999999999999999986554434446777754  3445555444 47889999999999


Q ss_pred             EecCCCC-CeEEEeeCCeecCcccc--ccEE-------EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535           80 IKANPTF-QYVTWTKDKRLLEPYQT--KDIV-------VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR  149 (460)
Q Consensus        80 ~~~~~~~-~~v~W~~~~~~~~~~~~--~~~~-------~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~  149 (460)
                      +.+.|.+ ..+.|++++..+.....  ....       ....++|.|.+++.+|+|.|+|.|.|..|..  +..+.|.|.
T Consensus       129 ~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~--~~~~~l~V~  206 (213)
T 2x1w_L          129 ARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK--KNSTFVRVH  206 (213)
T ss_dssp             EEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEE--EEEEEEEEE
T ss_pred             EECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcE--EEEEEEEEe
Confidence            9986543 36999999886532110  0000       1123469999999999999999999998875  556666667


Q ss_pred             CCCce
Q psy535          150 KPPAF  154 (460)
Q Consensus       150 ~~p~~  154 (460)
                      .+|.+
T Consensus       207 ~~p~i  211 (213)
T 2x1w_L          207 EDPIE  211 (213)
T ss_dssp             C----
T ss_pred             ccccc
Confidence            77654

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.81  E-value=3.7e-19  Score=144.92  Aligned_cols=160  Identities=16%  Similarity=0.255  Sum_probs=110.5

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecC---cc-------------ccccEEEeecCeEEEeecCCCCCe
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLE---PY-------------QTKDIVVMQNGSLLFTRVNQNHQG  125 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~---~~-------------~~~~~~~~~~~~l~i~~~~~~d~G  125 (460)
                      .|....+.+|++++|.|.+.+.++...|.|++++..+.   ..             ...++.+..+++|.|.+++.+|+|
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G   83 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG   83 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCE
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCc
Confidence            46667788999999999987644444799999876542   10             012555556788999999999999


Q ss_pred             EEEEEEEcCCCCcceeeEEEEEeeCCC---ceeeCCCcccccCCCC-eEEEEeeeeccCC-CCCCeeEEEcCCCccCCcc
Q psy535          126 RYTCTPYNAHGTQGSSGQMEVLVRKPP---AFTIKPEAMYQRKVGE-SVDMHCEAQEAEG-TQKPTITWQRRDGVALPKN  200 (460)
Q Consensus       126 ~y~C~~~~~~g~~~~~~~~~v~v~~~p---~~~~~~~~~~~~~~g~-~~~l~C~~~~~~~-~p~~~~~W~~~~~~~~~~~  200 (460)
                      .|+|.+.+..+...  ..+.|.|..++   .+...+.   ....|. .++|.|.+   .+ .|.|.+.|++++. .+.  
T Consensus        84 ~Y~C~~~~~~~~~~--~~~~L~V~~~~~~p~i~~~~~---~~~~g~~~v~L~C~~---~g~~p~p~i~W~~~g~-~l~--  152 (193)
T 2if7_A           84 SYRAQISTKTSAKL--SSYTLRILRQLRNIQVTNHSQ---LFQNMTCELHLTCSV---EDADDNVSFRWEALGN-TLS--  152 (193)
T ss_dssp             EEEEEEECSSCEEE--EEEEEEEECCCEEEEEEECCC------CSSEEEEEEEEE---ESCCTTCEEEEEETTE-EEE--
T ss_pred             eEEEEEEecCCCeE--EEEEEEEEccCCCCeEecCce---eecCCCceEEEEEEE---ecCCCceEEEEEeCCE-EcC--
Confidence            99999998877643  35666666554   2332221   233465 89999999   45 5688999999443 221  


Q ss_pred             cEEEecceEEEccccce-eceEEEEEEecccceeeee
Q psy535          201 RVKIVGGNITIEGLRRV-DFGYYECVVSNEVATIVQA  236 (460)
Q Consensus       201 ~~~~~~~~l~i~~~~~~-~~g~y~C~a~n~~g~~~~~  236 (460)
                          .+..|.|...... |.|.|+|.|.|..|..+..
T Consensus       153 ----~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          153 ----SQPNLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             ----SSSEEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             ----CCCeEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence                2345666544443 8999999999999987543

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.81  E-value=6.1e-19  Score=144.34  Aligned_cols=124  Identities=20%  Similarity=0.262  Sum_probs=102.2

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCee
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL   97 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~   97 (460)
                      ++|.|.+++.+|+|.|+|.|.+..+...+..+.|.|..+|.+...|....+.+|+.+.|.|.+.+.|.+..+.|++++..
T Consensus        68 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~  147 (195)
T 2c5d_C           68 SQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVP  147 (195)
T ss_dssp             EEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCB
T ss_pred             cEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEe
Confidence            48999999999999999999998776555668999999999988888888999999999999999876547999999998


Q ss_pred             cCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535           98 LEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus        98 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      +......    ..++.|.|.++.  |+|.|+|.|.|..|... +..+.|.|
T Consensus       148 ~~~~~~~----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~-s~~~~l~V  191 (195)
T 2c5d_C          148 LATAPGH----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTT-SRTATITV  191 (195)
T ss_dssp             SSSSTTS----SCCEEEEECCCS--SCEEEEEEEEETTEEEE-CCCEEEEE
T ss_pred             ccCCCCc----CCCCeEEEcccc--cCceEEEEEEcCCCceE-EEEEEEEE
Confidence            8643221    345679999887  89999999999988763 23444554

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.81  E-value=2.8e-17  Score=149.21  Aligned_cols=213  Identities=16%  Similarity=0.215  Sum_probs=153.5

Q ss_pred             cceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEE
Q psy535          206 GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYR  284 (460)
Q Consensus       206 ~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~  284 (460)
                      ...+.+.++.....+.|+..|.|..|...... +.....+| +|.++.. .....++.|+|.++.  + ..+.+|.+.++
T Consensus        58 ~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~-~~~~~~~p-~p~~l~~~~~~~~si~l~W~~~~--~-~~i~~Y~v~~~  132 (375)
T 3t1w_A           58 QSSCTFDNLSPGLEYNVSVYTVKDDKESVPIS-DTIIPEVP-QLTDLSFVDITDSSIGLRWTPLN--S-STIIGYRITVV  132 (375)
T ss_dssp             CCEEEECCCCTTCCEEEEEEEEETTEECCCEE-EEECCCCC-CCSCCEEECCCSSEEEEECCCCC--C-TTEEEEEEEEE
T ss_pred             ccEEEEcCCcCCCEEEEEEEEEcCCCCCCcEE-eeEcCCCC-CCceEEEEecCCCeEEEEEECCC--C-CCceEEEEEEE
Confidence            34688999999999999999999877544332 33332334 3555554 446789999999763  2 24589999988


Q ss_pred             ecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEec
Q psy535          285 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQ  363 (460)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~  363 (460)
                      ..+................+.|.+|.+++.|.|++.|.|..|.+..+. ....+   .|.+|.++.+...+ +++.|+|+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~-~~~~t---~~~~p~~l~~~~~~~~si~l~W~  208 (375)
T 3t1w_A          133 AAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTT-LTQQT---AVPPPTDLRFTNIGPDTMRVTWA  208 (375)
T ss_dssp             ESSSCCSCEEEEECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEE-EEEEC---CCCCCEEEEEESCCSSCEEEEEE
T ss_pred             ECCCCCceeEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCee-eeeec---CCCCCceeEEEecccCEEEEEEc
Confidence            765433222222333667899999999999999999999999876665 33333   35588899988666 69999999


Q ss_pred             CCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEe
Q psy535          364 PPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK  443 (460)
Q Consensus       364 ~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  443 (460)
                      +|.  ++.+.+|.|+|+..+.-                        ..|.... .....+.+.+.+|.|++.|.|+|+|.
T Consensus       209 ~p~--~~~i~~Y~v~~~~~~~~------------------------~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~  261 (375)
T 3t1w_A          209 PPP--SIDLTNFLVRYSPVKNE------------------------EDVAELS-ISPSDNAVVLTNLLPGTEYVVSVSSV  261 (375)
T ss_dssp             CCS--SCCCCEEEEEEEEGGGT------------------------TCCEEEE-ECTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCC--CCCccEEEEEEEeCCCC------------------------CCcEEEE-cCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence            974  46799999999975420                        0111111 12456899999999999999999999


Q ss_pred             ecCCCCCCCce
Q psy535          444 NELGDGMLSNI  454 (460)
Q Consensus       444 n~~G~s~~s~~  454 (460)
                      |..|.|+++..
T Consensus       262 ~~~g~s~~~~~  272 (375)
T 3t1w_A          262 YEQHESTPLRG  272 (375)
T ss_dssp             ETTEECCCEEE
T ss_pred             cCCCcCCceee
Confidence            99999876643

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.81  E-value=4.1e-19  Score=143.65  Aligned_cols=134  Identities=20%  Similarity=0.269  Sum_probs=106.0

Q ss_pred             CcccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE
Q psy535            6 GSLETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI   80 (460)
Q Consensus         6 ~~~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~   80 (460)
                      .....++.+..+     ++|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+...+....+.+|+++.|.|.+
T Consensus        43 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~  122 (182)
T 1rhf_A           43 VQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA  122 (182)
T ss_dssp             CCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEE
T ss_pred             cCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEe
Confidence            333445544443     489999999999999999999987765567899999999999888888889999999999999


Q ss_pred             ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535           81 KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus        81 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      .+.|.+..+.|++++..+.....      ..+.|.|.++  +|+|.|+|.|.|..|... +..+.|.|
T Consensus       123 ~g~p~p~~v~W~~~~~~~~~~~~------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~-s~~~~l~V  181 (182)
T 1rhf_A          123 VGPPEPVTIVWWRGTTKIGGPAP------SPSVLNVTGV--TQSTMFSCEAHNLKGLAS-SRTATVHL  181 (182)
T ss_dssp             ECSSSCCEEEEEETTEECSCSEE------SSEEEEECCC--SSCEEEEEEEEETTEEEE-CCCEEEEE
T ss_pred             cCCCCCCEEEEEcCCeECCCCCC------CceEEEEecc--ccCeEEEEEEECCCCCcc-cceEEEEe
Confidence            99877647999999998853211      4557888887  589999999999988763 23444443

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.81  E-value=2.5e-19  Score=148.97  Aligned_cols=174  Identities=13%  Similarity=0.232  Sum_probs=118.0

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC----------ccccccEEEe---ecCeEEEeecCCC
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE----------PYQTKDIVVM---QNGSLLFTRVNQN  122 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~----------~~~~~~~~~~---~~~~l~i~~~~~~  122 (460)
                      .+...| ...+.+|++++|.|.+.+.+.+ .+.|+|.  +....          .....++...   .+..|.|.+++.+
T Consensus         3 ~v~~~~-~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   80 (213)
T 3mj8_L            3 TLTQPP-LVSVALGQKATITCSGDKLSDV-YVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG   80 (213)
T ss_dssp             CBBCCS-EEEEETTSCEEEEEECSSTTTS-CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eEEeCC-cEEEeCCCCEEEEEEcCCCCCc-eEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence            344456 7788899999999999977665 7999982  22110          0012233322   2336999999999


Q ss_pred             CCeEEEEEEEcCCCC-cceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CC-CeeEEEcCCCc
Q psy535          123 HQGRYTCTPYNAHGT-QGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QK-PTITWQRRDGV  195 (460)
Q Consensus       123 d~G~y~C~~~~~~g~-~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~-~~~~W~~~~~~  195 (460)
                      |+|.|+|.+.+..+. ......+.|.|.    .+|.+...+... .+..|+.++|.|.+   .+. |. +.+.|++++..
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~l~C~~---~g~~p~~~~v~W~k~g~~  156 (213)
T 3mj8_L           81 DEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSS-EELKTNQATLVCMI---NGFYPADVAVTWEADGTP  156 (213)
T ss_dssp             GCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCH-HHHTTTEEEEEEEE---EEEBSSCCEEEEEETTEE
T ss_pred             hCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCc-ccccCCcEEEEEEe---eceeCCCeEEEEEcCCcc
Confidence            999999999998772 113334455555    677777766554 34589999999999   453 44 49999995443


Q ss_pred             cCCc---------ccEEEecceEEEccccceeceEEEEEEecccceeeeee
Q psy535          196 ALPK---------NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       196 ~~~~---------~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      +...         .........|.|..+...|.|.|+|.|.|..+.....+
T Consensus       157 l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          157 ITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             ECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             cCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence            3221         01111234588999999999999999999887655444

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.81  E-value=3.5e-19  Score=147.97  Aligned_cols=139  Identities=21%  Similarity=0.241  Sum_probs=103.7

Q ss_pred             ccCcccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec--------------------CC-ee
Q psy535            4 KVGSLETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF--------------------PA-KV   59 (460)
Q Consensus         4 ~~~~~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--------------------~p-~~   59 (460)
                      .....++|+++..++   +|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|..                    .| .+
T Consensus        42 ~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~  120 (212)
T 2r15_A           42 SAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH-QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL  120 (212)
T ss_dssp             EECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEE
T ss_pred             EEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcce-EEEEEEEEeeccchhhhccccCcccccccCCCccc
Confidence            334455777776654   59999999999999999999987764 4555555432                    23 33


Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec-C---eEEEeecCCCCCeEEEEEEEcCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-G---SLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~---~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      ...|....+.+|+.+.|.|.+.+.|.+ .+.|++++..+....  ++..... +   .|.|.++..+|+|.|+|.|.|..
T Consensus       121 ~~~~~~~~v~~g~~~~l~C~~~g~p~p-~v~W~~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~  197 (212)
T 2r15_A          121 GGLPDVVTIQEGKALNLTCNVWGDPPP-EVSWLKNEKALAQTD--HCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKY  197 (212)
T ss_dssp             EBCCSEEEEETTCCEEEEEEEECSSCC-EEEEEETTEEECCCS--SEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             ccCCCcEEEccCCeEEEEEEEcCCCCc-eEEEEECCeECccCC--CEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCC
Confidence            344666788899999999999998876 799999999987533  3333222 2   79999999999999999999999


Q ss_pred             CCcceeeEEEE
Q psy535          136 GTQGSSGQMEV  146 (460)
Q Consensus       136 g~~~~~~~~~v  146 (460)
                      |.......+.|
T Consensus       198 g~~~~~~~l~V  208 (212)
T 2r15_A          198 GSETSDFTVSV  208 (212)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CcEEEEEEEEE
Confidence            88654444443

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.81  E-value=1.1e-19  Score=151.25  Aligned_cols=138  Identities=18%  Similarity=0.250  Sum_probs=107.3

Q ss_pred             cccceEEEee------CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE
Q psy535            7 SLETRVVIKK------DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI   80 (460)
Q Consensus         7 ~~~~r~~~~~------~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~   80 (460)
                      ...+|+.+..      +++|.|.+++.+|+|.|+|.|.+..+.. ...+.|.|..+|.+...+....+.+|+.++|.|.+
T Consensus        67 ~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~  145 (214)
T 3jz7_A           67 DLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEP  145 (214)
T ss_dssp             GGTTTEEESCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEEC
T ss_pred             ccccceEEeccCccCCcccEEEccCChhhCeEEEEEEEeCCCcc-ccEEEEEEEcCCCCceeeeecceecCCcEEEEecC
Confidence            4467888865      4689999999999999999999987765 77889999988887665655668889999999999


Q ss_pred             -ecCCCCCeEEEeeCCe--ecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCC
Q psy535           81 -KANPTFQYVTWTKDKR--LLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP  151 (460)
Q Consensus        81 -~~~~~~~~v~W~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~  151 (460)
                       .+.|.+ .+.|++++.  .+..   .......++.|.|.++..+|+|.|+|.|.|..|..  +..+.|.|..|
T Consensus       146 ~~g~p~~-~v~W~~~~~~~~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~--~~~~~l~V~~P  213 (214)
T 3jz7_A          146 KEGSLPL-QFEWQKLSDSQTMPT---PWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSD--QCMLRLDVVPP  213 (214)
T ss_dssp             SBCCSSC-EEEEEECSTTCCCCG---GGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEE--EEEEEECCBCC
T ss_pred             CCCCCCC-EEEEEECCCCCccCc---cceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcE--EEEEEEEEeCC
Confidence             677665 899999543  3321   11122345689999999999999999999999876  44555655544

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.81  E-value=8.2e-19  Score=146.84  Aligned_cols=175  Identities=15%  Similarity=0.240  Sum_probs=119.1

Q ss_pred             cceeeeecceeeEEEEEEEecCCC----CCeEEEeeCCeecCc-------------cccccEEEeec------CeEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPT----FQYVTWTKDKRLLEP-------------YQTKDIVVMQN------GSLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~----~~~v~W~~~~~~~~~-------------~~~~~~~~~~~------~~l~i~~  118 (460)
                      .+....+.+|++++|.|.+.+.|.    ...+.|+|++..+..             ....+.....+      .+|.|.+
T Consensus         7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   86 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD   86 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred             CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence            345566788999999999877653    237999997533211             11234444322      3799999


Q ss_pred             cCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC
Q psy535          119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP  198 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~  198 (460)
                      ++.+|+|.|+|.+.+ .+.  ....+.|.|..++......... .+..|+.++|.|.+   .|.|.|.+.|+++++..+.
T Consensus        87 v~~~D~G~Y~C~~~~-~~~--~~~~~~l~V~~~~~~~~~~~~~-~~~~g~~v~L~C~~---~g~P~p~i~W~~~~g~~~~  159 (222)
T 3sbw_C           87 VKLQDAGVYRCMISY-GGA--DYKRITVKVNAPYNKINQRILV-VDPVTSEHELTCQA---EGYPKAEVIWTSSDHQVLS  159 (222)
T ss_dssp             CCGGGCEEEEEEEES-SSE--EEEEEEEEEEBCCCCCEEEEEE-EETTTTEEEEEEEE---EEBSCCEEEEEETTCCEEC
T ss_pred             cccccCeEEEEEEEe-CCC--ceeEEEEEEECCCCCCCceeee-eecCCCcEEEEEEe---cCCCCCeEEEEECCCceec
Confidence            999999999999998 443  3445667777666533222111 45789999999999   6789999999997565554


Q ss_pred             cccEE-E---ecceEE---EccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535          199 KNRVK-I---VGGNIT---IEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       199 ~~~~~-~---~~~~l~---i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      ..... .   .++.+.   ...+...|.|.|+|.|.|..|.......+.|..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~  211 (222)
T 3sbw_C          160 GKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPE  211 (222)
T ss_dssp             CEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred             CccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecC
Confidence            32211 1   122222   224566889999999999999988888887764

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.81  E-value=5.3e-19  Score=144.65  Aligned_cols=122  Identities=25%  Similarity=0.339  Sum_probs=100.4

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe---cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK   95 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~   95 (460)
                      +|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|.   .+|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++
T Consensus        64 ~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~  141 (194)
T 2a38_A           64 KLTIPAVTKANSGRYSLKATNGSGQA-TSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTP-VVKFYRDG  141 (194)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCC-EEEEEETT
T ss_pred             EEEECCCCcccCEEEEEEEEcCCceE-eEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCC-eEEEEECC
Confidence            89999999999999999999988764 566778887   56677777777888999999999999998776 79999999


Q ss_pred             eecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535           96 RLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM  144 (460)
Q Consensus        96 ~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~  144 (460)
                      ..+..  ..++....++   .|.|.++..+|+|.|+|.|.|..|....+..+
T Consensus       142 ~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  191 (194)
T 2a38_A          142 AEIQS--SLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL  191 (194)
T ss_dssp             EECCC--SSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EECCC--CCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEE
Confidence            98864  2344444443   69999999999999999999999876544433

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.81  E-value=1.8e-18  Score=142.03  Aligned_cols=164  Identities=13%  Similarity=0.215  Sum_probs=113.0

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcccccc-EE-EeecCeEEEeecCCCCCeEEEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD-IV-VMQNGSLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~-~~-~~~~~~l~i~~~~~~d~G~y~C~~~  132 (460)
                      .+|.+...|. ..+.+|++++|.|.+.+ +. +.+.|+|+|..+....... .. ...++.|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~   83 (201)
T 1nkr_A            7 RKPSLLAHPG-PLVKSEETVILQCWSDV-MF-EHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS   83 (201)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEEESS-CC-SEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEEEcC-CccCCCCcEEEEEeccC-CC-CEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence            4566766676 66789999999999974 43 4799999988664211100 00 1234579999999999999999998


Q ss_pred             cCCC---CcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc-cEEE-
Q psy535          133 NAHG---TQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVKI-  204 (460)
Q Consensus       133 ~~~g---~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~-~~~~-  204 (460)
                      +...   ....+..+.|.|..   +|.+...+..  .+..|+.++|.|.+   .+ +.+.+.|++++....... .... 
T Consensus        84 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~--~v~~G~~v~L~C~~---~~-~~~~~~w~k~g~~~~~~~~~~~~~  157 (201)
T 1nkr_A           84 VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGP--TVLAGENVTLSCSS---RS-SYDMYHLSREGEAHERRLPAGPKV  157 (201)
T ss_dssp             BTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCS--EECTTCEEEEEEEE---SS-CCSEEEEEETTCSSCEEEECEEEE
T ss_pred             cCCCCccccCCCCCEEEEeeccCCCCceecCCCC--ccCCCCeEEEEEeC---CC-CCceEEEEECCcccCccccccccc
Confidence            6532   22234455566553   4666665652  57899999999998   44 568999999654332211 1111 


Q ss_pred             ---ecceEEEccccceeceEEEEEEecc
Q psy535          205 ---VGGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       205 ---~~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                         ....|.|.++.  |+|.|+|.|.+.
T Consensus       158 ~~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          158 NGTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             TTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             CCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence               14578999998  999999999865

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.80  E-value=1.1e-18  Score=144.89  Aligned_cols=132  Identities=25%  Similarity=0.448  Sum_probs=101.9

Q ss_pred             eEEEeec-CCCCCeeEEEEEEeCCCCcceeeeEEEEecC-------CeeEEcceeeeecceeeEEEEEEEecCCCCCeEE
Q psy535           19 TLVINPV-GSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP-------AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVT   90 (460)
Q Consensus        19 ~L~i~~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~   90 (460)
                      .|.|.++ +.+|+|.|+|.|.|..|.. ...+.|.|..+       |.+...|....+.+|+++.|.|.+.+.|.+ .+.
T Consensus        64 ~L~i~~v~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~v~  141 (212)
T 2yd6_A           64 VLRIQPLRTPRDEAIYECVASNNVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP-EIT  141 (212)
T ss_dssp             EEEECSCCTTTTCEEEEEEEEETTEEE-EEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCC-EEE
T ss_pred             EEEEeccCCCCCCeEEEEEEEcCCCcE-EEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCC-eEE
Confidence            6999999 5999999999999988874 67788888753       567777777788899999999999998776 799


Q ss_pred             EeeCCeecCccc-cccEEEeec---CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCc
Q psy535           91 WTKDKRLLEPYQ-TKDIVVMQN---GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA  153 (460)
Q Consensus        91 W~~~~~~~~~~~-~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~  153 (460)
                      |++++..+.... ..++.....   +.|.|.++..+|+|.|+|.|.|..|.. .+..+.|.+..++.
T Consensus       142 W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~s~~a~l~~~~~~~  207 (212)
T 2yd6_A          142 WFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTR-YSAPANLYVRGTKH  207 (212)
T ss_dssp             EEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEEC---
T ss_pred             EEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCcc-ccccccEEEEeccc
Confidence            999999886432 234433332   579999999999999999999999876 34455666665554

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.80  E-value=4.8e-19  Score=148.63  Aligned_cols=172  Identities=12%  Similarity=0.181  Sum_probs=112.4

Q ss_pred             eeeecceeeEEEEEEEecCCCC--CeEEEeeCCeec-----------Cc----cccccEEEee------cCeEEEeecCC
Q psy535           65 VQYLPFRLQGVVQCHIKANPTF--QYVTWTKDKRLL-----------EP----YQTKDIVVMQ------NGSLLFTRVNQ  121 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~-----------~~----~~~~~~~~~~------~~~l~i~~~~~  121 (460)
                      ...+.+|++++|.|.+.+.+.+  ..|.|+|++...           ..    ....+.....      +.+|.|.+++.
T Consensus        13 pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~   92 (226)
T 4f80_A           13 PILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTA   92 (226)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCch
Confidence            3567889999999999775443  369999876421           11    0112222222      23699999999


Q ss_pred             CCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc
Q psy535          122 NHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR  201 (460)
Q Consensus       122 ~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~  201 (460)
                      +|+|.|+|.|.|..|..  ...+.+.+..++..  .+.. ..+..|..+.|.|.+.  .+.|.|.+.|+++++..+....
T Consensus        93 ~D~G~Y~C~a~n~~~~~--~~~v~~~~~~~~~~--~~~~-~~~~~g~~v~l~c~~~--g~~P~p~i~W~k~~~~~~~~~~  165 (226)
T 4f80_A           93 SDSGKYLCYFQDGDFYE--KALVELKVAALGSD--LHVD-VKGYKDGGIHLECRST--GWYPQPQIQWSNNKGENIPTVE  165 (226)
T ss_dssp             GGCEEEEEEEEETTEEE--EEEEEEEEEBCCCC--CEEE-EEEEETTEEEEEEEEE--EEBSCCEEEEECTTSCBCCCEE
T ss_pred             HHCeeEEEEEECCCcEE--EEEEEEeeccceec--ccce-eeeccCCceeeEEEec--cCCCCCEEEEEECCceEcCCCc
Confidence            99999999999977654  34455544333221  2222 2567899999999983  3469999999987766654332


Q ss_pred             EE--E-ecce---EEEccccceeceEEEEEEecccceeeeeeEEEEec
Q psy535          202 VK--I-VGGN---ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       202 ~~--~-~~~~---l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      ..  . .++.   +.+..+...|.|.|+|.|.|..|.......|.|.+
T Consensus       166 ~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e  213 (226)
T 4f80_A          166 APVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD  213 (226)
T ss_dssp             CCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred             eEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence            11  1 1222   33446778899999999999999988888777654

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.80  E-value=9.8e-19  Score=145.90  Aligned_cols=177  Identities=18%  Similarity=0.276  Sum_probs=121.9

Q ss_pred             cceeeeecceeeEEEEEEEecCCCC--CeEEEeeCCeecCcc----------------ccccEEEe------ecCeEEEe
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTF--QYVTWTKDKRLLEPY----------------QTKDIVVM------QNGSLLFT  117 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~----------------~~~~~~~~------~~~~l~i~  117 (460)
                      .|....+.+|++++|.|.+.+.+.+  ..|+|+|++..+...                ...++...      .+++|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            4566778899999999999887654  248999977544211                11122111      12469999


Q ss_pred             ecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC
Q psy535          118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL  197 (460)
Q Consensus       118 ~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~  197 (460)
                      +++.+|+|.|+|.+.+..+..... ...+.+..++.....+.....+..|..+.+.|.+   .+.|.|.+.|++++....
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~---~g~p~p~i~W~~~~~~~~  160 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQA-RLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTA---EGSPAPSVTWDTEVKGTT  160 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEE-EEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEE---EEBSCCEEEEEESSCCEE
T ss_pred             eccHHHCCceeEEEEeccCceeee-EEEEEEeeeccceeeeeeeeeeeeccccceeeec---cCCcCceEEEEECCcccc
Confidence            999999999999998766554332 3333334344333333333367789999999998   788999999999655443


Q ss_pred             CcccEEE-----ecceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535          198 PKNRVKI-----VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       198 ~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                      .......     ..+.|.|..+...|.|.|+|.|.|..|.......+.+.
T Consensus       161 ~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          161 SSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             EEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             cCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            2222221     23469999999999999999999999987666665553

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.80  E-value=1.1e-17  Score=135.54  Aligned_cols=175  Identities=18%  Similarity=0.325  Sum_probs=125.2

Q ss_pred             CCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN  323 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n  323 (460)
                      +|.+|.++.. .....++.|+|.++..    .+.+|.+.++... ..+..... ......+.|.+|.+++.|.|++.|.|
T Consensus         6 ~p~~P~~l~~~~~~~~sv~l~W~~p~~----~i~~Y~v~~~~~~-~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a~~   79 (186)
T 1qr4_A            6 DLDNPKDLEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPS-GKKNEMEI-PVDSTSFILRGLDAGTEYTISLVAEK   79 (186)
T ss_dssp             --CCCEEEEEESCCSSEEEEEEECCSS----CCSEEEEEEECTT-CCEEEEEE-CTTCSEEEEESCCSSCEEEEEEEEES
T ss_pred             CCcCCCceEEEecCCCEEEEEEeCCCC----CccEEEEEEEeCC-CCeeEEEC-CCCCCEEEECCCCCCCEEEEEEEEEc
Confidence            5777887764 4567799999997631    3468999888543 33333332 23567899999999999999999999


Q ss_pred             CCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccc
Q psy535          324 ELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG  402 (460)
Q Consensus       324 ~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~  402 (460)
                      ..|.+.. ..+.+.+   .|.+|.++.+...+ +++.|+|++|.   +.+.+|.|+|+..+...                
T Consensus        80 ~~~~s~~-~~~~~~t---~p~~P~~l~~~~~~~~sv~l~W~~p~---~~i~~Y~v~~~~~~~~~----------------  136 (186)
T 1qr4_A           80 GRHKSKP-TTIKGST---VVGSPKGISFSDITENSATVSWTPPR---SRVDSYRVSYVPITGGT----------------  136 (186)
T ss_dssp             SSCBCCC-EEEEEEC---CCCCCSCEEEESCCSSCEEEEECCCS---SCCSEEEEEEEETTCCC----------------
T ss_pred             CCccCCC-EEEEEEC---CCCCCCccEEEEeCCCEEEEEEECCC---CcccEEEEEEEeCCCCC----------------
Confidence            7665532 2333433   38889999998776 69999999884   56999999999754200                


Q ss_pred             cceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                             .....   .....+++.|.+|.|++.|.|+|+|.|..|.|++.. ..+.|
T Consensus       137 -------~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~-~~~~T  182 (186)
T 1qr4_A          137 -------PNVVT---VDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPIS-GILKT  182 (186)
T ss_dssp             -------CEEEE---EETTCCEEEECSCCSSCEEEEEEEEEETTEECCCEE-EEEEC
T ss_pred             -------ceEEE---cCCCcCEEEEcCCCCCCEEEEEEEEEcCCCcCcCEE-EEEEe
Confidence                   00011   113568899999999999999999999999887643 34444

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=99.80  E-value=4.1e-19  Score=148.65  Aligned_cols=169  Identities=21%  Similarity=0.319  Sum_probs=105.9

Q ss_pred             eeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCC-CCCCcceEEEee
Q psy535          276 KQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK-PGPPRNVSVTEV  354 (460)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~-P~~p~~~~~~~~  354 (460)
                      +..|.+.+++.... +..... ......+.+.+|.+++.|.|++.|.|..|.+..+..+.+.+.... |.+|..+.....
T Consensus        22 Vt~Y~~~~~~~~~~-~~~~~~-~~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~~~~~~~~~~~~~~~~~   99 (232)
T 4go6_B           22 VTHYFLPPDDAVPS-DDDLGT-VPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKS   99 (232)
T ss_dssp             ECEEECCCC--------------------CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECCCTTSCCCCEEEEEEEE
T ss_pred             EEEEEEEeeCCCCC-cEEEEE-CCCccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeecCCCCCCCCeeeEEecC
Confidence            35666655443322 222221 224567999999999999999999999999998888888765443 455555555444


Q ss_pred             cceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceE-------EE
Q psy535          355 NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQI-------TI  427 (460)
Q Consensus       355 ~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i  427 (460)
                      .+++.|+|.+|...+++|.+|.|+|+..+.-.            .............|..+.........+       .+
T Consensus       100 ~~sv~l~W~~P~~~~G~i~~Y~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  167 (232)
T 4go6_B          100 PDGAHLTWEPPSVTSGKIIEYSVYLAIQSSQA------------GGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAH  167 (232)
T ss_dssp             TTEEEEEEECCSCCSSCCCEEEEEEEEC-------------------------CCEEEEEEEEESSSEEEEEHHHHTTBC
T ss_pred             CCEEEEEEeCCCCCCCceeeEEEEEEECCCCC------------cceeeeccCCceeeEEEEeccCceEEEEccccEEee
Confidence            57999999999888889999999999754310            000111112333455444333333333       35


Q ss_pred             CCCCcCceEEEEEEEeecCCCCCCCceeEee
Q psy535          428 NRLTPATTYEFQVVGKNELGDGMLSNIVVVK  458 (460)
Q Consensus       428 ~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~  458 (460)
                      .+|.+++.|.|||+|+|.+|.|++|++..+.
T Consensus       168 ~~L~~~t~Y~frV~A~N~~G~Gp~S~v~t~~  198 (232)
T 4go6_B          168 IDYTTKPAIIFRIAARNEKGYGPATQVRWLQ  198 (232)
T ss_dssp             BEESSSEEEEEEEEEECSSCBCCCEEEEEEC
T ss_pred             ecCccCCceEEEEEEECCCcCCCCcccEEec
Confidence            6789999999999999999999999865543

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.79  E-value=1.2e-18  Score=144.81  Aligned_cols=169  Identities=14%  Similarity=0.210  Sum_probs=114.7

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eec----------CccccccEEEeecC---eEEEeecCCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLL----------EPYQTKDIVVMQNG---SLLFTRVNQNH  123 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~----------~~~~~~~~~~~~~~---~l~i~~~~~~d  123 (460)
                      +...|....+.+|++++|.|.+.+.|.+ .|.|+|++  ..+          ......++.....+   +|.|.+++.+|
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGN-NLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCC-CEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhh
Confidence            3445777888999999999999988765 69999843  211          11112344444332   79999999999


Q ss_pred             CeEEEEEEEcCCCCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCc
Q psy535          124 QGRYTCTPYNAHGTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPK  199 (460)
Q Consensus       124 ~G~y~C~~~~~~g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~  199 (460)
                      +|.|+|.+.|..+.... ....|.|..   +|.+...+... .+..|+.++|.|.+.  ...|.+ .+.|++++. .+..
T Consensus        83 ~G~Y~C~~~~~~~~~~~-~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~~~l~C~~~--g~~p~~~~v~W~k~g~-~~~~  157 (213)
T 3d9a_L           83 FGMYFCQQSNSWPYTFG-GGTKLEIKRADAAPTVSIFPPSS-EQLTSGGASVVCFLN--NFYPKDINVKWKIDGS-ERQN  157 (213)
T ss_dssp             CEEEEEEECSSSSCEEC-CCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEE--EEBSSCCEEEEEETTE-EECT
T ss_pred             CEEEEEeeecCCcceeC-CCEEEEEecCCCCceeEeECCCh-hhcCCCcEEEEEEEe--eecCCceEEEEEcCCC-cCcc
Confidence            99999999987664322 223344443   67666644433 234688999999983  225655 899999543 3332


Q ss_pred             c-cEE-----------EecceEEEccccceeceEEEEEEeccccee
Q psy535          200 N-RVK-----------IVGGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       200 ~-~~~-----------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      . ...           .....|.|.++...|.|.|+|.|.|.....
T Consensus       158 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          158 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             TEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             eeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            2 111           112379999999999999999999976554

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.79  E-value=1.5e-19  Score=180.63  Aligned_cols=228  Identities=15%  Similarity=0.173  Sum_probs=165.2

Q ss_pred             ceEEEccccceeceEEEEEE-ecccce----eeee--eEEEEecCCCCCCCceeee-eecceEEEEeecCCCCCCCceee
Q psy535          207 GNITIEGLRRVDFGYYECVV-SNEVAT----IVQA--AQLVVEGTQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQN  278 (460)
Q Consensus       207 ~~l~i~~~~~~~~g~y~C~a-~n~~g~----~~~~--~~l~v~~~~p~~p~~~~~~-~~~~~~~l~w~~~~~~~~~~~~~  278 (460)
                      ..+.+.++.+...+.|+..| .|..|.    ...+  ..+.....+|.+|..+... ....++.|+|.|+...++. +.+
T Consensus       549 ~~~~l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~~Ps~P~~l~~~~~s~tsI~LsW~pP~~~nG~-I~~  627 (897)
T 2dtg_E          549 PGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGN-ITH  627 (897)
T ss_dssp             CEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCCCCCCCEEEEEEECSSSCEEEEEECCCCSSSS-CSE
T ss_pred             cceEeCCCCCCcEEEEEEEEEEeccCCccccCCccceEEEECCCCCCcCCcceEEEeCCCCEEEEEEeCCCCCCCC-eeE
Confidence            46888999999999999999 887775    2222  2223333456777777653 4557999999998666665 478


Q ss_pred             EEEEEEecCCC-----------------------------------------------------------------Ceee
Q psy535          279 YVIWYREQGNK-----------------------------------------------------------------DWLP  293 (460)
Q Consensus       279 ~~~~~~~~~~~-----------------------------------------------------------------~~~~  293 (460)
                      |.+.|+.....                                                                 .|..
T Consensus       628 Y~V~~~~~~~~~~~~~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p~~~~~~~~~~s~~~~W~~  707 (897)
T 2dtg_E          628 YLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFED  707 (897)
T ss_dssp             EECCEEEECCCCSCTTCSSSCSCCCCCC----------------------------------------------------
T ss_pred             EEEEEEECCCCccceecccccCCCcCCccccceeeecccccCcccccccccCCCccCCcCcccchhhhhhhhheeeeEEE
Confidence            99987653320                                                                 0110


Q ss_pred             e-----e--------------------------ccCCCCceEEEccCccCccEEEEEEEEcCCCCCCC---CCcEEEEcc
Q psy535          294 I-----P--------------------------VTPPGSTQITINRLTPATTYEFQVVGKNELGDGML---SNIVVVKTK  339 (460)
Q Consensus       294 ~-----~--------------------------~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~---s~~~~~~~~  339 (460)
                      .     .                          ........+.|.+|.+++.|.|++.|.|..|.+..   +..+.+++.
T Consensus       708 ~~~n~v~~~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~~G~g~~~s~s~~v~~~T~  787 (897)
T 2dtg_E          708 YLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTM  787 (897)
T ss_dssp             ----------------------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEECC
T ss_pred             ccCceEEccCCCcccccccccccccCccccceEEecCCceEEEECCCCCCcEEEEEEEEEeCCCCCCCCCCCceeEEecc
Confidence            0     0                          00013368999999999999999999999997653   566777776


Q ss_pred             C--CCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeee
Q psy535          340 G--PKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPI  415 (460)
Q Consensus       340 ~--~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (460)
                      .  .+|.+|.++.+...+ +++.|+|++|...++.|.+|.|+|+..+. |..                       .+. .
T Consensus       788 ~~~~~p~~P~~l~~~~~~~~sv~LsW~~P~~~nG~I~~Y~V~y~~~~~~~~~-----------------------~~~-~  843 (897)
T 2dtg_E          788 PEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELH-----------------------LCD-T  843 (897)
T ss_dssp             CCCCCCCCCCCCCCCSSSSSCCCCCCCCCCSCSSCEEEECCCCBSSSBCCCC-----------------------CCC-C
T ss_pred             CccCCCCCCcceEEEeCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCcceE-----------------------EEE-e
Confidence            5  457889998887766 58999999998888899999999987542 100                       000 0


Q ss_pred             ccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          416 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       416 ~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      .......+.++|.+|.|+ .|.|+|+|.|.+|.|++|+++.++|+
T Consensus       844 ~~~~~~~~~~~l~~L~pg-tY~~rV~A~n~~G~G~~S~~v~~~T~  887 (897)
T 2dtg_E          844 RKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSWTEPTYFYVT  887 (897)
T ss_dssp             SSSCCCTTCCCCCSCCSS-EECCCCCEEETTBCCCCCCCCEECCC
T ss_pred             eeeecccCcEEECCCCCC-cEEEEEEEEeCCcccCCCCCEEEEeC
Confidence            011235678899999999 69999999999999999999999884

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.79  E-value=1.3e-18  Score=144.56  Aligned_cols=142  Identities=22%  Similarity=0.343  Sum_probs=110.9

Q ss_pred             cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCC-cceeeeEEEEecCCeeEEcceeeeecceeeEEEEEE-EecCC
Q psy535            7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGE-PQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCH-IKANP   84 (460)
Q Consensus         7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~-~~~~~   84 (460)
                      ..++|+.+.. ++|.|.+++.+|+|.|+|.|.+..|. .....+.|.|..+|.+...+....+.+|++++|.|. +.+.|
T Consensus        55 ~~~~r~~~~~-~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p  133 (212)
T 1f97_A           55 PYADRVTFSS-SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSP  133 (212)
T ss_dssp             GGTTTEEEET-TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBS
T ss_pred             cccCcEEeec-eeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcC
Confidence            4567888754 89999999999999999999998763 235678888988887765555567888999999999 67777


Q ss_pred             CCCeEEEeeCCe-ecCcccc-------ccEEE-eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC
Q psy535           85 TFQYVTWTKDKR-LLEPYQT-------KDIVV-MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK  150 (460)
Q Consensus        85 ~~~~v~W~~~~~-~~~~~~~-------~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~  150 (460)
                      .+ .+.|++++. .+.....       .++.. ...+.|.|.++..+|+|.|+|.|.|..|....+..+.|.|..
T Consensus       134 ~~-~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          134 PS-EYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             CC-EEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             CC-EEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            66 799999999 7754221       12222 235679999999999999999999999987667777777754

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.79  E-value=9.6e-19  Score=143.48  Aligned_cols=138  Identities=22%  Similarity=0.331  Sum_probs=105.7

Q ss_pred             ccCcccceEEEee--CC--eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEE-----cceeeeecceeeE
Q psy535            4 KVGSLETRVVIKK--DG--TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF-----TPTVQYLPFRLQG   74 (460)
Q Consensus         4 ~~~~~~~r~~~~~--~~--~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-----~~~~~~~~~g~~~   74 (460)
                      .+...+.|+.+..  ++  +|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|..+|.+..     .+....+.+|+.+
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~  122 (197)
T 2j8h_A           44 EIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV  122 (197)
T ss_dssp             ECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEE-EEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCC
T ss_pred             ECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCce-eEEEEEEEcCCCcCCCCccccccCeEEEeCCCEE
Confidence            3444456777654  34  89999999999999999999988775 7788888887665532     2355667889999


Q ss_pred             EEEEEEecCCCCCeEEEeeCCeecCccccccEEEe---ecCeEEEee-cCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           75 VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM---QNGSLLFTR-VNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        75 ~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~-~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      .|.|.+.+.|.+ .+.|++++..+...  .++...   ..+.|.|.+ +..+|+|.|+|.|.|..|....+..+.
T Consensus       123 ~l~C~~~g~p~p-~i~W~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~  194 (197)
T 2j8h_A          123 SIKIPFSGKPDP-VITWQKGQDLIDNN--GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD  194 (197)
T ss_dssp             EEEEEEEEESCC-EEEEEESSCEECSS--SSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEEecCCC-cEEEEECCEEeecC--CCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEE
Confidence            999999998876 89999999988632  333332   224799999 999999999999999998864444333

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.79  E-value=3.2e-18  Score=136.95  Aligned_cols=161  Identities=14%  Similarity=0.234  Sum_probs=113.0

Q ss_pred             ceeeeecceeeEEEEEEEec-CCCCCeEEEee--CCeecCc--------cccccEEEeecCeEEEeecCCCCCeEEEEEE
Q psy535           63 PTVQYLPFRLQGVVQCHIKA-NPTFQYVTWTK--DKRLLEP--------YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~-~~~~~~v~W~~--~~~~~~~--------~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  131 (460)
                      +......+|++++|.|.... ..+.+.|.|++  ++..+..        ....++.+..+++|.|.+++.+|+|.|+|.+
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~   85 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI   85 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence            34456778999999995432 12334799999  8876621        1346777788899999999999999999999


Q ss_pred             EcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEE
Q psy535          132 YNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITI  211 (460)
Q Consensus       132 ~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i  211 (460)
                      .|..|.......+.|.|..+..   .|..  . ..+..++|.|.+   .+.|.+.+.|++++. .+.     .....+.+
T Consensus        86 ~n~~g~~~~~~~~~L~V~~~~~---~P~i--~-~~~~~v~L~C~~---~~~p~~~~~W~~~g~-~l~-----~~~~~i~~  150 (182)
T 1hnf_A           86 YDTKGKNVLEKIFDLKIQERVS---KPKI--S-WTCINTTLTCEV---MNGTDPELNLYQDGK-HLK-----LSQRVITH  150 (182)
T ss_dssp             EETTSCEEEEEEEEEEEECCCC---CCEE--E-EETTTTEEEEEC---SSCSSCEEEEEESSC-EEE-----EESSCEEE
T ss_pred             EeCCCceeEEEEEEEEEcCcCC---CCEE--E-EccCcEEEEeEc---cCCCCCEEEEEECCE-ECC-----CCCcEEEE
Confidence            9988876555667777765421   1111  1 123368999998   677889999999554 331     12233443


Q ss_pred             ccccceeceEEEEEEecccceeeeeeEE
Q psy535          212 EGLRRVDFGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       212 ~~~~~~~~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      .. ...|.|.|+|.|.|..+.......+
T Consensus       151 ~~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          151 KW-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             EC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             ec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence            32 4678999999999999987766554

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.79  E-value=4.7e-19  Score=148.31  Aligned_cols=173  Identities=20%  Similarity=0.366  Sum_probs=119.7

Q ss_pred             eeeecceeeEEEEEEEecCCC----CCeEEEeeCCeec-----------CccccccEEEee------cCeEEEeecCCCC
Q psy535           65 VQYLPFRLQGVVQCHIKANPT----FQYVTWTKDKRLL-----------EPYQTKDIVVMQ------NGSLLFTRVNQNH  123 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~----~~~v~W~~~~~~~-----------~~~~~~~~~~~~------~~~l~i~~~~~~d  123 (460)
                      ...+.+|++++|.|.+.+.+.    ...+.|++++...           .+....+.....      +.+|.|.+++.+|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            345778999999999987653    2479999976443           111223444333      4679999999999


Q ss_pred             CeEEEEEEEcCCCCcceeeEEEEEeeCC---CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc
Q psy535          124 QGRYTCTPYNAHGTQGSSGQMEVLVRKP---PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN  200 (460)
Q Consensus       124 ~G~y~C~~~~~~g~~~~~~~~~v~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~  200 (460)
                      +|.|+|.+.+.. ..  +..+.|.|..+   |.+...+..  .+..|+.++|.|.+.  .+.|.+.+.|+++++..+...
T Consensus        84 ~G~Y~C~~~~~~-~~--~~~~~l~V~~~~~~p~i~~~~~~--~v~~G~~~~l~C~~~--~g~P~~~v~W~~~~~~~~~~~  156 (222)
T 4i0k_A           84 EGSYTCFVSIQD-FD--SAAVSLQVAAPYSKPSMTLEPNK--DLRPGNMVTITCSSY--QGYPEAEVFWKDGQGVPLTGN  156 (222)
T ss_dssp             CSCEEEEEEECC-CC--CCCCCCCCCBCCCCCEEECCC-------CCSEEEEEEEEE--EEBSCCEEEEECTTSCBCCSE
T ss_pred             CEEEEEEEEeCC-Cc--eEEEEEEEEcCCCCCcEEeCCCc--eecCCceEEEEEecc--cccCCCeEEEEcCCCccCCCC
Confidence            999999999753 22  23344444443   555544432  567899999999984  578889999998666555432


Q ss_pred             c-EEE---ecc---eEEEccccceeceEEEEEEecccceeeeeeEEEEecC
Q psy535          201 R-VKI---VGG---NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGT  244 (460)
Q Consensus       201 ~-~~~---~~~---~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~  244 (460)
                      . ...   ..+   .|.|.++...|.|.|+|.|.|..|.......|.|..+
T Consensus       157 ~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  207 (222)
T 4i0k_A          157 VTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQ  207 (222)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-
T ss_pred             cceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCC
Confidence            1 111   122   2788899999999999999999999988888888653

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.79  E-value=3.4e-19  Score=142.66  Aligned_cols=120  Identities=16%  Similarity=0.166  Sum_probs=92.8

Q ss_pred             cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCC
Q psy535            7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPT   85 (460)
Q Consensus         7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~   85 (460)
                      ..++|+++..+|+|.|.+++.+|+|.|+|.|.|..|.. ....+.|.|..++.   .|..  ...+..++|.|.+.+.|+
T Consensus        50 ~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~---~p~i--~~~~~~v~L~C~~~g~p~  124 (176)
T 1hng_A           50 LKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVS---KPMI--YWECSNATLTCEVLEGTD  124 (176)
T ss_dssp             ESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCC---CCEE--EEETTTTEEEEECSSCSS
T ss_pred             CCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCC---CCEE--EecCCcEEEEEEecCCCC
Confidence            45789999889999999999999999999999988874 35567788876432   1111  112345899999999887


Q ss_pred             CCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceee
Q psy535           86 FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG  142 (460)
Q Consensus        86 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~  142 (460)
                      + .|+|+++|..+...          ..+.|.++..+|+|.|+|.|.|..|......
T Consensus       125 p-~i~W~~~g~~l~~~----------~~~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~  170 (176)
T 1hng_A          125 V-ELKLYQGKEHLRSL----------RQKTMSYQWTNLRAPFKCKAVNRVSQESEME  170 (176)
T ss_dssp             C-EEEEEETTEEEEEE----------SSSEEEEECSCCSSCEEEEEEETTEEEEEEE
T ss_pred             c-EEEEEECCEECCCC----------CcEEEEEEEccCCeEEEEEEEecCCCceecc
Confidence            5 89999999887531          1255668889999999999999998765443

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=99.79  E-value=4.5e-18  Score=154.95  Aligned_cols=264  Identities=16%  Similarity=0.213  Sum_probs=171.0

Q ss_pred             eeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccce--eceEEEEEEecccce
Q psy535          155 TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRV--DFGYYECVVSNEVAT  232 (460)
Q Consensus       155 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~--~~g~y~C~a~n~~g~  232 (460)
                      .+.|... .+..|.++++.|.+.   .   ....... +.......++......+.+.++...  ....|.|....    
T Consensus       202 ~ifP~~~-vv~~GS~vt~~Ci~~---~---~~~~~~l-~~~~~~~~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~~----  269 (483)
T 3e0g_A          202 KVFPQDK-VILVGSDITFCCVSQ---E---KVLSALI-GHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTED----  269 (483)
T ss_dssp             CEESCSE-EEETTCCEEEEECCS---S---CEEEEES-SSCCBCCEECSSSCEEEEECSCCCCCSSCEEEEEEESS----
T ss_pred             EEeccCC-EEeCCCCEEEEEEeC---c---cccceec-CcccceeEEecCCEEEEEEeCCCCccCccceEEEecCC----
Confidence            3445555 578999999999872   1   1233333 2211111111111234666666542  23468998632    


Q ss_pred             eeeeeEEEEecCCCCCCCceeeee-ecceEEEEeecCCCCCC--CceeeEEEEEEecCCCCeeeeecc---CCCCceEEE
Q psy535          233 IVQAAQLVVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGP--DLKQNYVIWYREQGNKDWLPIPVT---PPGSTQITI  306 (460)
Q Consensus       233 ~~~~~~l~v~~~~p~~p~~~~~~~-~~~~~~l~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i  306 (460)
                      ......+.+. .||.+|.++.+.. ....+.++|.|+.+.+.  +....|.+.|+..+..  ......   ......+.+
T Consensus       270 ~~~g~~l~vg-~PP~~P~nlsC~s~~~~sltCsW~pg~dt~l~G~~~t~YtL~y~~~g~~--~~C~~~~~~~~~~~~C~~  346 (483)
T 3e0g_A          270 NIFGTVIFAG-YPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKY--VRLKRAEAPTNESYQLLF  346 (483)
T ss_dssp             CEEEEEEEEE-CCCCCCEEEEEEBSSTTEEEEEEECCSCCSCCGGGCCEEEEEETTTCCE--EEECCCSSCSCSCEEEEE
T ss_pred             cccceEEECc-CCCCCCCccEEEecCCCEEEEEECCCCcCCcCCCCCeeEEEEEEECCCC--ccccCCcccCCCEEEEEE
Confidence            2233345554 5788999888654 34689999998766542  2236899988754321  111111   123457889


Q ss_pred             ccCccCccEEEEEEEEcCCCCCCCCCcEEEEcc-CCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCC
Q psy535          307 NRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK-GPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS  384 (460)
Q Consensus       307 ~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~-~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~  384 (460)
                      ..+.+...|.|+|.|.|..|.+.. . +.+... ...|.||.++.+.... +++.|+|++|...++.+..|+|+|+..+.
T Consensus       347 ~~l~~~t~Y~f~V~A~N~lG~~~S-~-~~~~~~~~VkP~PP~nl~v~~~~stsl~LsW~~P~~~~~~~L~YeVrYr~~~~  424 (483)
T 3e0g_A          347 QMLPNQEIYNFTLNAHNPLGRSQS-T-ILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNS  424 (483)
T ss_dssp             ECCTTCCCEEEEEEEECSSCEEEE-E-EEECGGGGBCCCCCEEEEECCSSSSSCCEEEECCSCCTTSBCCCEEEEECSSS
T ss_pred             ccCCCCcEEEEEEEEEeCCCCccc-c-eEEEeccccCCCCCeeeEEEEecCCeEEEEECCCCCCCCceEEEEEEEEECCC
Confidence            999999999999999999997653 2 444322 2458999999998655 68999999997666678999999997653


Q ss_pred             eeeeccccCCCCcccccccceecCceeeeeeccC--CCCcceEEECCCCcCceEEEEEEEeecCCC---CCCCceeEeec
Q psy535          385 WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT--PPGSTQITINRLTPATTYEFQVVGKNELGD---GMLSNIVVVKT  459 (460)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~---s~~s~~~~~~T  459 (460)
                      ..                        .|..+...  ......+.+.+|.|++.|.|||+|. ..|.   |+||.++.++|
T Consensus       425 ~~------------------------~~~~vsv~~~~~~~~s~~l~~L~PgT~Y~vrVRA~-~~g~g~WSeWS~~~~f~T  479 (483)
T 3e0g_A          425 VQ------------------------EQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCS-TETFWKWSKWSNKKQHLT  479 (483)
T ss_dssp             CC------------------------CEEECCCBCCSSSBCCCCCCSCCSSSSCEEEEECC-CSSCCCCCCCCCCCCCCC
T ss_pred             CC------------------------ceEEEEEeccCCceeEEEEeccCCCcEEEEEEEEe-eCCCCCcCCCCCceeeEC
Confidence            10                        11111111  1123467899999999999999999 6675   78888888887


Q ss_pred             C
Q psy535          460 K  460 (460)
Q Consensus       460 ~  460 (460)
                      +
T Consensus       480 ~  480 (483)
T 3e0g_A          480 T  480 (483)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.79  E-value=1.5e-18  Score=142.35  Aligned_cols=139  Identities=21%  Similarity=0.344  Sum_probs=107.5

Q ss_pred             ccCcccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEE---cceeeeecceeeEEEE
Q psy535            4 KVGSLETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF---TPTVQYLPFRLQGVVQ   77 (460)
Q Consensus         4 ~~~~~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~---~~~~~~~~~g~~~~l~   77 (460)
                      .....+.++.+..++   +|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|..+|.+..   .+....+.+|+.+.|.
T Consensus        46 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~  124 (197)
T 3lcy_A           46 KELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEV-ETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH  124 (197)
T ss_dssp             EEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEE
T ss_pred             EECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCce-eEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEE
Confidence            334456778887776   89999999999999999999988764 6677888877665532   2344567789999999


Q ss_pred             EEEecCCCCCeEEEeeCCeecCccccccEEEeec---CeEEEeecCC-CCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535           78 CHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN---GSLLFTRVNQ-NHQGRYTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus        78 C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~-~d~G~y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      |.+.+.|.+ .+.|++++..+..  ..++.....   +.|.|.++.. +|+|.|+|.|.|..|.....  +.|.|
T Consensus       125 C~~~~~p~p-~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~V  194 (197)
T 3lcy_A          125 VMYIGRPVP-AMTWFHGQKLLQN--SENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAI--LDVEI  194 (197)
T ss_dssp             EEEEEESCC-EEEEEETTEECCC--CSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEE--EEEEE
T ss_pred             EEEeeeeCC-eeEEeECCEECCC--CCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEE--EEEEE
Confidence            999998876 7999999998864  234444333   4699999985 89999999999999886444  44444

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.78  E-value=8e-18  Score=139.90  Aligned_cols=168  Identities=15%  Similarity=0.208  Sum_probs=112.1

Q ss_pred             cceeeeecceeeEEEEEEEecC------CCCCeEEEeeCCeec-----C----------ccccccEEEee-----cCeEE
Q psy535           62 TPTVQYLPFRLQGVVQCHIKAN------PTFQYVTWTKDKRLL-----E----------PYQTKDIVVMQ-----NGSLL  115 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~------~~~~~v~W~~~~~~~-----~----------~~~~~~~~~~~-----~~~l~  115 (460)
                      .|....+.+|++++|.|.+.+.      .+.+.+.|+|++...     .          .....++....     +.+|.
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~   85 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS   85 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred             CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence            4666778899999999998754      134579999976521     0          11224555433     23799


Q ss_pred             EeecCCCCCeEEEEEEEcCCCCcc--eeeEEEEEeeCC---CceeeCCCcccccCCCCeEEEEeeeeccCC----CCCCe
Q psy535          116 FTRVNQNHQGRYTCTPYNAHGTQG--SSGQMEVLVRKP---PAFTIKPEAMYQRKVGESVDMHCEAQEAEG----TQKPT  186 (460)
Q Consensus       116 i~~~~~~d~G~y~C~~~~~~g~~~--~~~~~~v~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~p~~~  186 (460)
                      |.+++.+|+|.|+|.+.+..+...  .+..+.|.|..+   |.+.. +.   .+..|+.++|.|.+   .+    .|.|.
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~---~~~~G~~v~L~C~~---~~~~~~~p~p~  158 (214)
T 2zg1_A           86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE---PLESGRPTRLSCSL---PGSCEAGPPLT  158 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C---CCCTTCCEEEEEEC---TTCCSCSSCCE
T ss_pred             EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc---cccCCCeEEEEEEe---ccCCCCCCCce
Confidence            999999999999999998653221  123455666553   33332 21   35689999999998   44    48899


Q ss_pred             eEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535          187 ITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ  238 (460)
Q Consensus       187 ~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~  238 (460)
                      +.|++++..... ... ...+.|.|..+..+|.|.|+|.|.|..+.......
T Consensus       159 v~W~~~~~~~~~-~~~-~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~  208 (214)
T 2zg1_A          159 FSWTGNALSPLD-PET-TRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERT  208 (214)
T ss_dssp             EEEESSTTSSSC-SSC-CCSSEEEECCCTTCCSCEEEEEEECC----CCEEE
T ss_pred             EEEeCCCCccCC-CCc-eeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEE
Confidence            999996543322 221 34567999999999999999999997655433333

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.78  E-value=1.5e-18  Score=146.30  Aligned_cols=163  Identities=12%  Similarity=0.205  Sum_probs=112.5

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecC-----------ccccccEE----------EeecCeEEEeecC
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLE-----------PYQTKDIV----------VMQNGSLLFTRVN  120 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~-----------~~~~~~~~----------~~~~~~l~i~~~~  120 (460)
                      .|....+.+|+++.|.|.+.+.+..+.+.|++++....           .....++.          ...++.|.|.+++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~   85 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ   85 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence            45667788999999999998877434799998654321           00112333          4555679999999


Q ss_pred             CCCCeEEEEEEEcCC-CCcceeeEEEEEeeCCC---ceeeCCCcccccCCCCeE-EEEeeeeccCCCCCCeeEEEcCCCc
Q psy535          121 QNHQGRYTCTPYNAH-GTQGSSGQMEVLVRKPP---AFTIKPEAMYQRKVGESV-DMHCEAQEAEGTQKPTITWQRRDGV  195 (460)
Q Consensus       121 ~~d~G~y~C~~~~~~-g~~~~~~~~~v~v~~~p---~~~~~~~~~~~~~~g~~~-~l~C~~~~~~~~p~~~~~W~~~~~~  195 (460)
                      .+|+|.|+|.+.+.. +.  .+..+.|.|..+|   .+...+... .+..|+.+ .|.|.+.  .+.|.|.+.|++++..
T Consensus        86 ~~D~G~Y~C~~~~~~~~~--~~~~~~l~V~~~p~~~~~~~~~~~~-~~~~g~~~~~l~C~~~--~~~p~p~i~W~~~~~~  160 (231)
T 2pet_A           86 VGDERDYVCVVRAGAAGT--AEATARLNVFAKPEATEVSPNKGTL-SVMEDSAQEIATCNSR--NGNPAPKITWYRNGQR  160 (231)
T ss_dssp             GGGCEEEEEEEECGGGCE--EEEEEEEEEEBCCCCCEEEECCSSC-CTTCCSEEEEEEEEEE--EEBSCCEEEEEETTEE
T ss_pred             cccCceEEEEEEecCCCc--eEEEEEEEEEecCCCcEEecCCcce-eecCCCceEEEEEEeE--CcccCCEEEEEECCcc
Confidence            999999999999876 44  3455666666554   344444433 56788887 9999984  5788999999995443


Q ss_pred             cCCcc----cEEEec-------------ceEEEccccceeceEEEEEEecc
Q psy535          196 ALPKN----RVKIVG-------------GNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       196 ~~~~~----~~~~~~-------------~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      +....    +..+..             ..|.|......|.|.|+|.|.|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          161 LEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             CCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             CccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            33222    222221             45777755666699999999994

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.78  E-value=1.5e-16  Score=144.10  Aligned_cols=209  Identities=19%  Similarity=0.251  Sum_probs=151.7

Q ss_pred             ceEEEccccceeceEEEEEEecccceeeeeeEEEEecCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEe
Q psy535          207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYRE  285 (460)
Q Consensus       207 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~  285 (460)
                      ..+.+.++.....+.|++.|.|..|..... ...+.. .+.+|.++.. .....++.|+|.++..  . .+.+|.+.++.
T Consensus        58 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~-~~~~~~-~~~~p~~l~~~~~~~~si~l~W~~p~~--~-~~~~Y~v~~~~  132 (368)
T 1fnf_A           58 SSCTFDNLSPGLEYNVSVYTVKDDKESVPI-SDTIIP-AVPPPTDLRFTNIGPDTMRVTWAPPPS--I-DLTNFLVRYSP  132 (368)
T ss_dssp             CEEECCCCCTTSCEEEEEEEEETTEECCCE-EEEECC-CCCCCEEEEEESCCSSCEEEEEECCTT--C-CCSEEEEEEEE
T ss_pred             CEEEECCCCCCCEEEEEEEEEcCCCccCce-eeeecC-CCcCCceeEEEEcCCCeEEEEeeCCCC--C-CCcEEEEEEEE
Confidence            467888999999999999999988764432 223332 2336666654 3467799999998732  2 24789999887


Q ss_pred             cCCC-CeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEec
Q psy535          286 QGNK-DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQ  363 (460)
Q Consensus       286 ~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~  363 (460)
                      .... .|...... .....+.+.+|.+++.|.|++.|.|..|.+..   +..... ..|.+|.++.+...+ +++.|+|+
T Consensus       133 ~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~---~~~~~~-~~~~~P~~l~~~~~~~~sv~l~W~  207 (368)
T 1fnf_A          133 VKNEEDVAELSIS-PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTP---LRGRQK-TGLDSPTGIDFSDITANSFTVHWI  207 (368)
T ss_dssp             TTCTTCCEEEEEC-TTCCEEEECSCCTTCEEEEEEEEEETTEECCC---EEEEEE-CCCCCCEEEEEESCCSSEEEEEEE
T ss_pred             CCCCCccEEEEcC-CCcceEEecCCCCCCEEEEEEEEEeCCCCCCC---eEeeec-CCCCCCCccEEEEccCCEEEEEEe
Confidence            5543 45544432 35678999999999999999999999986643   333332 236788899988766 69999999


Q ss_pred             CCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEe
Q psy535          364 PPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK  443 (460)
Q Consensus       364 ~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  443 (460)
                      +|.   +.+.+|.|+|+..+..                      +...+.   ......+.+.|.+|.|++.|.|+|.|.
T Consensus       208 ~p~---~~i~~Y~v~~~~~~~~----------------------~~~~~~---~~~~~~~~~~i~~L~p~t~Y~~~V~A~  259 (368)
T 1fnf_A          208 APR---ATITGYRIRHHPEHFS----------------------GRPRED---RVPHSRNSITLTNLTPGTEYVVSIVAL  259 (368)
T ss_dssp             CCS---SCCSEEEEEEECSCCS----------------------SCCEEE---EEETTCCEEEEESCCTTCEEEEEEEEE
T ss_pred             CCC---CCcCEEEEEEecCCCC----------------------CCccEE---EeCCCcCEEEECCCCCCCEEEEEEEEE
Confidence            973   6799999999975420                      000011   112466789999999999999999999


Q ss_pred             ecCCCCCCCc
Q psy535          444 NELGDGMLSN  453 (460)
Q Consensus       444 n~~G~s~~s~  453 (460)
                      |..|.|+++.
T Consensus       260 n~~g~~~~~~  269 (368)
T 1fnf_A          260 NGREESPLLI  269 (368)
T ss_dssp             ETTEECCCEE
T ss_pred             eCCccCCccc
Confidence            9999987764

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.78  E-value=4.8e-18  Score=140.72  Aligned_cols=164  Identities=10%  Similarity=0.193  Sum_probs=110.9

Q ss_pred             ceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Ceec----------CccccccEEEeecC---eEEEeecCCCCCeEE
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLL----------EPYQTKDIVVMQNG---SLLFTRVNQNHQGRY  127 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~----------~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y  127 (460)
                      |....+.+|++++|.|.+.+.+.+ .+.|+|+  +..+          ......++.....+   .|.|.+++.+|+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   85 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTS-RMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIY   85 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCC-CEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEE
Confidence            777788999999999999988755 6999984  2221          01112344443322   799999999999999


Q ss_pred             EEEEEcCCCCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCcc-cE
Q psy535          128 TCTPYNAHGTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPKN-RV  202 (460)
Q Consensus       128 ~C~~~~~~g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~~-~~  202 (460)
                      +|.+.|..+... .....|.|..   +|.+...+... .+..|+.++|.|.+.  ...|.+ .+.|++++ ..+... ..
T Consensus        86 ~C~~~~~~~~~~-~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~~--g~~p~~~~v~W~k~g-~~~~~~~~~  160 (210)
T 1lk3_L           86 FCQQSWNGPLTF-GAGTKLELKRADAAPTVSIFPPST-EQLATGGASVVCLMN--NFYPRDISVKWKIDG-TERRDGVLD  160 (210)
T ss_dssp             EEEECSSSSCEE-CCCEEEEECCCCBCCEEEEECCCH-HHHTTTEEEEEEEEE--EEBSSCCEEEEEETT-EECCTTEEE
T ss_pred             EEEEEcCCCcee-CCCEEEEEcCCCcCCeEEEECCch-hhccCCcEEEEEEEE--eEeCCceEEEEEeCC-ccCCCCceE
Confidence            999998765432 2222344443   56666544433 234799999999983  224544 89999954 344322 11


Q ss_pred             E-----------EecceEEEccccceeceEEEEEEecccce
Q psy535          203 K-----------IVGGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       203 ~-----------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      .           .....|.|..+...|.|.|+|.|.|....
T Consensus       161 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          161 SVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS  201 (210)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             ccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence            0           01126889999999999999999997654

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.78  E-value=1.7e-18  Score=143.88  Aligned_cols=136  Identities=24%  Similarity=0.456  Sum_probs=100.1

Q ss_pred             EEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec-CCeeEEcceeeeecceeeEEEEEEE-ecCCCCCeEEEeeCCee
Q psy535           20 LVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-PAKVTFTPTVQYLPFRLQGVVQCHI-KANPTFQYVTWTKDKRL   97 (460)
Q Consensus        20 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~v~W~~~~~~   97 (460)
                      |.|.+++.+|+|.|+|.|.|..|...+..+.|.|.. ++.+...+....+.+|+.++|.|.+ .+.|.+ .+.|++++..
T Consensus        74 l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~v~W~~~~~~  152 (212)
T 2v9r_A           74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEP-TISWKKDGSP  152 (212)
T ss_dssp             CCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCC-EEEEEETTEE
T ss_pred             EEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCC-EEEEEECCcc
Confidence            334566999999999999998876545677888765 4556566777788899999999998 777766 8999999999


Q ss_pred             cCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCC
Q psy535           98 LEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPE  159 (460)
Q Consensus        98 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~  159 (460)
                      +... ..+ ....++.|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|..+|.+...|.
T Consensus       153 l~~~-~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~s~~~~l~V~~~P~~~~~P~  211 (212)
T 2v9r_A          153 LDDK-DER-ITIRGGKLMITYTRKSDAGKYVCVGTNMVGER-ESEVAELTVLERPSFVKAAA  211 (212)
T ss_dssp             ECTT-STT-EEEETTEEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEEC---------
T ss_pred             CCCC-cce-EEccCCeEEEeeCCHhhCeeEEEEEecccCce-ecceEEEEEEeCchHhhhcc
Confidence            8642 223 33467789999999999999999999998875 33346777888888776553

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.77  E-value=2.5e-17  Score=140.59  Aligned_cols=177  Identities=15%  Similarity=0.260  Sum_probs=120.8

Q ss_pred             cceeeeecceeeEEEEEEEecCC-CCCeEEEeeC--CeecC---------------ccccccEEEeec-----CeEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRLLE---------------PYQTKDIVVMQN-----GSLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~-----~~l~i~~  118 (460)
                      .|....+.+|++++|.|.+.+.+ +.+.+.|+|+  +..+.               .....++.+..+     .+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (256)
T 1nqb_A            6 QSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS   85 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence            45567788999999999998875 2347999994  22210               011245554432     3799999


Q ss_pred             cCCCCCeEEEEEEEcCCCC---cceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-----eeEEE
Q psy535          119 VNQNHQGRYTCTPYNAHGT---QGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-----TITWQ  190 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~g~---~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-----~~~W~  190 (460)
                      ++.+|+|.|+|.+.|..|.   ......+.|.|..+|.+...|... .+..|+.++|.|.+   .+.+.+     .+.|+
T Consensus        86 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~-~v~~G~~v~L~C~~---~~~~~~~~~~~~v~W~  161 (256)
T 1nqb_A           86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSL-PVSLGDQASISCRS---SQSIVHSNGNTYLEWY  161 (256)
T ss_dssp             CCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEE-EECTTCCEEEEEEE---SSCCBCTTSCBCEEEE
T ss_pred             CChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEE-EEecCCcEEEEeEe---cCcccccccceEEEEE
Confidence            9999999999999987652   222334567777777776666654 68899999999998   676654     99999


Q ss_pred             cC--CCccC------------CcccEEEe----cceEEEccccceeceEEEEEEecccce-eeeeeEEEEe
Q psy535          191 RR--DGVAL------------PKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVAT-IVQAAQLVVE  242 (460)
Q Consensus       191 ~~--~~~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~-~~~~~~l~v~  242 (460)
                      +.  +..+.            ...++...    ...|.|.++...|+|.|.|.+.|.... ......|.|.
T Consensus       162 k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  232 (256)
T 1nqb_A          162 LQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK  232 (256)
T ss_dssp             EECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence            83  32220            02233322    236999999999999999999985432 2223345554

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.77  E-value=3.6e-18  Score=144.86  Aligned_cols=178  Identities=14%  Similarity=0.227  Sum_probs=118.5

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccc--cEEEeecCeEEEeecCCCCCeEEEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTK--DIVVMQNGSLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~~~  132 (460)
                      .+|.+...|. ..+.+|++++|.|.+.+.  ...+.|+|+|..+.+....  ......++.|.|.+++.+|+|.|+|.+.
T Consensus         6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~~--~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   82 (257)
T 1b6u_A            6 RKPSLLAHPG-PLVKSEETVILQCWSDVR--FQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS   82 (257)
T ss_dssp             CCCEECCBSC-SEEESSCCEEEEEEESSC--CSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred             CCCEEEEcCC-CEecCCCCEEEEEecCCC--CcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence            3566666665 667889999999999753  3479999998765321100  0001234579999999999999999998


Q ss_pred             cCCC---CcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc-EEE-
Q psy535          133 NAHG---TQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR-VKI-  204 (460)
Q Consensus       133 ~~~g---~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~-~~~-  204 (460)
                      +..+   ....+..+.|.|..   +|.+...+..  .+..|++++|.|.+   .+. .+.+.|++++........ ... 
T Consensus        83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~--~V~~G~~vtL~C~~---~~~-~~~~~w~k~g~~~~~~~~~~~~~  156 (257)
T 1b6u_A           83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGP--TVLAGESVTLSCSS---RSS-YDMYHLSREGEAHERRFSAGPKV  156 (257)
T ss_dssp             CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCT--TCBTTCEEEEEEEC---SSC-CSEEEEEETTSSCEECCBCBCCS
T ss_pred             ccCCCccccccCCCEEEecccCCCCcceEccCCC--ccCCCCEEEEEEeC---CCC-CcEEEEEECCcccCccccccccc
Confidence            6432   22345566666654   4666666653  57899999999997   444 478999996543322111 111 


Q ss_pred             ---ecceEEEccccceeceEEEEEEecccc-----eeeeeeEEEEec
Q psy535          205 ---VGGNITIEGLRRVDFGYYECVVSNEVA-----TIVQAAQLVVEG  243 (460)
Q Consensus       205 ---~~~~l~i~~~~~~~~g~y~C~a~n~~g-----~~~~~~~l~v~~  243 (460)
                         .+..|.|.++.  |.|.|+|.+.+...     ..+..+.|.|.+
T Consensus       157 ~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g  201 (257)
T 1b6u_A          157 NGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTG  201 (257)
T ss_dssp             SSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBC
T ss_pred             CCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEec
Confidence               24578999998  99999999997532     223445566654

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1.1e-18  Score=131.04  Aligned_cols=117  Identities=27%  Similarity=0.382  Sum_probs=98.4

Q ss_pred             EEEEEEcCCCCCCCCCcEEEEccCCCCC-CCcceEEEeec-ceEEEEecCCCC--CCccceEEEEEEEEcCCeeeecccc
Q psy535          317 FQVVGKNELGDGMLSNIVVVKTKGPKPG-PPRNVSVTEVN-NGFVISWQPPLE--RASLIQYYLIKYRTDGSWKTLNKGQ  392 (460)
Q Consensus       317 ~~~~a~n~~G~~~~s~~~~~~~~~~~P~-~p~~~~~~~~~-~~v~l~W~~~~~--~~~~i~~y~i~~~~~~~~~~~~~~~  392 (460)
                      ++|.|.|..|.+..|..+.+.+....|. +|.++++...+ +++.|+|++|..  .++.+.+|.|+|+..+..       
T Consensus         2 ~~V~A~n~~G~g~~s~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~-------   74 (124)
T 2ed9_A            2 SSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRR-------   74 (124)
T ss_dssp             CSCCCCCCCCCCCCCCCCCCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSS-------
T ss_pred             CeEEEEeCCccCCCCCCEEEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCC-------
Confidence            3578999999999999999988888786 89899998776 599999999976  688999999999976430       


Q ss_pred             CCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          393 IRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                                        .|...  .....+.+.|.+|.|++.|.|+|+|.|..|.|++|+++.++|+
T Consensus        75 ------------------~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  122 (124)
T 2ed9_A           75 ------------------GEMET--LEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETP  122 (124)
T ss_dssp             ------------------CCEEE--ECSSCSEEEEECCCSSCEEEECEEEECSSCBCCCCCCEEEECC
T ss_pred             ------------------cceEE--ecCCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEEECC
Confidence                              11111  2346788999999999999999999999999999999999985

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.77  E-value=4.2e-17  Score=142.31  Aligned_cols=174  Identities=21%  Similarity=0.276  Sum_probs=131.9

Q ss_pred             cCCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCC-CCeeeeeccCCCCceEEEccCccCccEEEEEE
Q psy535          243 GTQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN-KDWLPIPVTPPGSTQITINRLTPATTYEFQVV  320 (460)
Q Consensus       243 ~~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~  320 (460)
                      .++|.+|.++.. .....++.|+|.++.   . .+.+|.+.|+.... ..|...... .....+.|.+|.+++.|.|++.
T Consensus        18 ~~~p~~P~~l~~~~~~~~sv~l~W~~p~---~-~~~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~   92 (290)
T 3r8q_A           18 GPAIPAPTDLKFTQVTPTSLSAQWTPPN---V-QLTGYRVRVTPKEKTGPMKEINLA-PDSSSVVVSGLMVATKYEVSVY   92 (290)
T ss_dssp             --CCCCCEEEEEEEECSSCEEEEEECCS---S-CCCEEEEEEEESSSSSCCEEEEEC-TTCCEEEECSCCSSCEEEEEEE
T ss_pred             CCCCCCCCceEEEECCCCEEEEEEeCCC---C-CeeEEEEEEEeCCCCCceEEEEcC-CCccEEEeCCCCCCCEEEEEEE
Confidence            356777887775 566789999999862   2 34789999887653 445554433 3567999999999999999999


Q ss_pred             EEcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCccc
Q psy535          321 GKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS  399 (460)
Q Consensus       321 a~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~  399 (460)
                      |.|..|.+..+ ...+.+... |.+|.++.+...+ +++.|+|+++   ++.+.+|.|+|+..+....            
T Consensus        93 a~~~~g~s~~s-~~~~~t~~~-~~~P~~l~~~~~~~~sv~l~W~~p---~~~~~~Y~v~~~~~~~~~~------------  155 (290)
T 3r8q_A           93 ALKDTLTSRPA-QGVVTTLEN-VSPPRRARVTDATETTITISWRTK---TETITGFQVDAVPANGQTP------------  155 (290)
T ss_dssp             EEETTEECCCE-EEEEECCCC-CCCCEEEEEEEECSSCEEEEEECC---SCCCCEEEEEEEESSSCCC------------
T ss_pred             EEeCCCCCCCc-ceeEecCCC-CCCCceeEEEEcCCCeEEEEEeCC---CCcccEEEEEEEECCCCcc------------
Confidence            99999988766 455565544 6789999998766 6999999997   4679999999997543110            


Q ss_pred             ccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCC
Q psy535          400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS  452 (460)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s  452 (460)
                                  +  ........+.+.|.+|.|++.|.|+|.|.|..|.|+++
T Consensus       156 ------------~--~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~  194 (290)
T 3r8q_A          156 ------------I--QRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPV  194 (290)
T ss_dssp             ------------E--EEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             ------------e--EEecCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCE
Confidence                        0  00112467789999999999999999999999988764

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.77  E-value=1.3e-17  Score=138.56  Aligned_cols=181  Identities=18%  Similarity=0.223  Sum_probs=128.4

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee---cCeEEEeecCCCCCeEEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~  131 (460)
                      .+|.+ ..|....+.+|+.+.|.|.+.+.|.+ .+.|+|+|..+......++.+..   .+.|.|.++..+|+|.|+|.|
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a   95 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSA-TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA   95 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEEEEESCC-EEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEEeecCCC-EEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence            45666 46767888999999999999998876 89999999998764444555443   357999999999999999999


Q ss_pred             EcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeec-cCCCCCC--eeEEEcCCCccCCcccEEEe---
Q psy535          132 YNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQE-AEGTQKP--TITWQRRDGVALPKNRVKIV---  205 (460)
Q Consensus       132 ~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~p~~--~~~W~~~~~~~~~~~~~~~~---  205 (460)
                      .|..|...  ..+.|.+..+|.......   ....+..+.|.|.... +.+.|..  .+.|.+.+............   
T Consensus        96 ~n~~g~~~--~~~~l~v~~~P~~p~~~~---~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~  170 (215)
T 3mtr_A           96 VNRIGQES--LEFILVQADTPSSPSIDQ---VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS  170 (215)
T ss_dssp             ECSSCEEE--EEEEEEECCCCCCCEEEE---EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHH
T ss_pred             EECCCceE--EEEEEEECCCCCCCcceE---EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCccccccccccccc
Confidence            99998764  456666666664332211   2234677888886421 1333433  47888754432221111111   


Q ss_pred             -cceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535          206 -GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       206 -~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                       ...+.|.++...+.|.|+|.|.|..|....+..+.+.
T Consensus       171 ~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~  208 (215)
T 3mtr_A          171 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK  208 (215)
T ss_dssp             HHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred             ccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeE
Confidence             2679999999999999999999999988777666655

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.77  E-value=2.1e-17  Score=139.86  Aligned_cols=166  Identities=16%  Similarity=0.184  Sum_probs=111.0

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Ceec-------------CccccccEEEee----cCeEEEeec
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLL-------------EPYQTKDIVVMQ----NGSLLFTRV  119 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~-------------~~~~~~~~~~~~----~~~l~i~~~  119 (460)
                      +...|....+.+|++++|.|. .+.+.+ .|.|+|+  +...             ......++.+..    ..+|.|.++
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v   80 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHN-NMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELA   80 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCS-EEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSC
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCc-cEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecC
Confidence            445677788999999999999 666654 7999995  2111             000123343332    347999999


Q ss_pred             CCCCCeEEEEEEEcCCCCcc---eeeEEEEEeeCCC------------ceeeCCCcccccCCCCeEEEEeeeeccCCCCC
Q psy535          120 NQNHQGRYTCTPYNAHGTQG---SSGQMEVLVRKPP------------AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK  184 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~~g~~~---~~~~~~v~v~~~p------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~  184 (460)
                      +.+|+|.|+|.+.|..|...   ......|.|..++            .+...|... .+..|+.++|.|.+   .+.|.
T Consensus        81 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~-~v~~G~~v~L~C~~---~~~p~  156 (238)
T 2p1y_A           81 TPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSL-TVWEGETAILNCSY---ENSAF  156 (238)
T ss_dssp             CGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEE-EEETTSCEEEEEEC---CCTTC
T ss_pred             CcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceE-EEeCCCeEEEEEEE---ecCCC
Confidence            99999999999998765211   1122344444433            444445554 67899999999998   78888


Q ss_pred             CeeEEEcCCCcc-C-------------CcccEEEe------cceEEEccccceeceEEEEEEeccc
Q psy535          185 PTITWQRRDGVA-L-------------PKNRVKIV------GGNITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       185 ~~~~W~~~~~~~-~-------------~~~~~~~~------~~~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      +.+.|++++... .             ...++...      ...|.|.++..+|+|.|.|.|.|..
T Consensus       157 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          157 DYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             CEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            999999854211 0             12334432      2479999999999999999999873

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.77  E-value=2.3e-17  Score=141.13  Aligned_cols=176  Identities=17%  Similarity=0.219  Sum_probs=115.4

Q ss_pred             ceeeeecceeeEEEEEEEecCC-CCCeEEEeeC--CeecC--------------ccccccEEEeec-----CeEEEeecC
Q psy535           63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRLLE--------------PYQTKDIVVMQN-----GSLLFTRVN  120 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~~--------------~~~~~~~~~~~~-----~~l~i~~~~  120 (460)
                      |....+.+|++++|.|.+.+.| +.+.|.|+|+  +..+.              .....++.+..+     .+|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (257)
T 1f3r_B            7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ   86 (257)
T ss_dssp             ECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence            4445688999999999999875 2347999995  22110              001245554432     379999999


Q ss_pred             CCCCeEEEEEEEcCCC-------CcceeeEEEEEeeCCC---------------ceeeCCCcccccCCCCeEEEEeeeec
Q psy535          121 QNHQGRYTCTPYNAHG-------TQGSSGQMEVLVRKPP---------------AFTIKPEAMYQRKVGESVDMHCEAQE  178 (460)
Q Consensus       121 ~~d~G~y~C~~~~~~g-------~~~~~~~~~v~v~~~p---------------~~~~~~~~~~~~~~g~~~~l~C~~~~  178 (460)
                      .+|+|.|+|.|.|..|       .........|.|..+|               .+...+... .+..|+.++|.|.+  
T Consensus        87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~v~~G~~v~L~C~~--  163 (257)
T 1f3r_B           87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLL-SASVGDRVTLSCKG--  163 (257)
T ss_dssp             TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEE-CCCTTCCEEEEEEC--
T ss_pred             cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEE-EEcCCCCEEEEEEE--
Confidence            9999999999998754       1111223455565443               222334333 57899999999998  


Q ss_pred             cCCCCCCeeEEEcC--CCccC------------CcccEEEe----cceEEEccccceeceEEEEEEecccceeeeeeEEE
Q psy535          179 AEGTQKPTITWQRR--DGVAL------------PKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLV  240 (460)
Q Consensus       179 ~~~~p~~~~~W~~~--~~~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~  240 (460)
                       .+.+.+.+.|++.  +..+.            ...++...    ...|.|.++..+|+|.|.|.|.|..........|.
T Consensus       164 -~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~  242 (257)
T 1f3r_B          164 -SQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLE  242 (257)
T ss_dssp             -SSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEEC
T ss_pred             -CCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEE
Confidence             6778889999983  32210            02333322    23699999999999999999999652222333455


Q ss_pred             Ee
Q psy535          241 VE  242 (460)
Q Consensus       241 v~  242 (460)
                      |.
T Consensus       243 V~  244 (257)
T 1f3r_B          243 LK  244 (257)
T ss_dssp             CS
T ss_pred             Ee
Confidence            54

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.77  E-value=6.6e-18  Score=135.39  Aligned_cols=121  Identities=16%  Similarity=0.226  Sum_probs=95.6

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCee
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL   97 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~   97 (460)
                      ++|.|.+++.+|+|.|+|.+.|..+   +..+.|.|..++... .+....+.+|+.++|.|.+.+.++++.+.|+|+|..
T Consensus        54 ~~L~i~~~~~~d~G~Y~C~~~n~~~---s~~~~l~V~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~  129 (175)
T 1fnl_A           54 SSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLL-QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKD  129 (175)
T ss_dssp             SEEEESSCCGGGCEEEEEECSSSCC---CCCEEEEEECSSEEE-ECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEE
T ss_pred             eEEEEeCCCcccCEEEEEEeeCCcc---cccEEEEEeCCCcee-eCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeE
Confidence            4899999999999999999998543   566788887655443 334466788999999999998876668999999998


Q ss_pred             cCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC
Q psy535           98 LEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK  150 (460)
Q Consensus        98 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~  150 (460)
                      +..       ...++.|.|.++..+|+|.|+|.|.|..+.. .+..+.|.|..
T Consensus       130 ~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~  174 (175)
T 1fnl_A          130 RKY-------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNV-SSETVNITITQ  174 (175)
T ss_dssp             EEE-------EEECCCEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEEC
T ss_pred             ccC-------CCCCCEEEEcccChhhCeEEEEEEEcCCCCc-cCccEEEEEeC
Confidence            742       1345689999999999999999999976543 45566676654

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*

Probab=99.77  E-value=1e-16  Score=141.24  Aligned_cols=234  Identities=14%  Similarity=0.141  Sum_probs=139.3

Q ss_pred             EEEccccceeceEEEEEEe---cccceeeeeeEEEE---ecCCCCCCCceeeee-ecceEEEEeecCCCCCCCceeeEEE
Q psy535          209 ITIEGLRRVDFGYYECVVS---NEVATIVQAAQLVV---EGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVI  281 (460)
Q Consensus       209 l~i~~~~~~~~g~y~C~a~---n~~g~~~~~~~l~v---~~~~p~~p~~~~~~~-~~~~~~l~w~~~~~~~~~~~~~~~~  281 (460)
                      ..+..+.....+.++..|.   +..|..+......+   ...+|.+|.++.+.. ....+.++|.++...+.  ...|.+
T Consensus        55 ~~~~~~~~~~~y~~~V~a~~~~~~~g~~s~~~~~~~~~~~~~pp~~P~~l~c~~~~~~~~~c~W~~~~~~~~--~~~Y~l  132 (314)
T 3bpo_C           55 RRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNTSP--DTNYTL  132 (314)
T ss_dssp             EEEEECCCSSCEEEEEEECC---------CCEEEEECCCCC-CCSSCEEEEEEEETTTEEEEEEECCC---C--CCCEEE
T ss_pred             EEEEEEcCCCcEEEEEEEEecCCCCCCCCcCeeeeeecCCCCCCCCCEeceEEECCCCeEEEEECCCCCCCC--CccEEE
Confidence            3444455556666777774   33343332232222   234566788777644 46799999998765533  368888


Q ss_pred             EEEecCCCCeeeeec--cCCCCceEEEccCcc----CccEEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEee
Q psy535          282 WYREQGNKDWLPIPV--TPPGSTQITINRLTP----ATTYEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEV  354 (460)
Q Consensus       282 ~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~----~~~~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~  354 (460)
                      .|+..+...+.....  .......+.+..+..    ...|.|++.|.|..|.+..+ .+.+.... ..|.||.++++...
T Consensus       133 ~y~~~~~~~~~~C~~~~~~~~~~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~-~~~~~~~~~v~P~pP~~l~~~~~  211 (314)
T 3bpo_C          133 YYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPS-FNIVPLTSRVKPDPPHIKNLSFH  211 (314)
T ss_dssp             EEEESSCSSCEECCCEEEETTEEEEEEECCC--------CCEEEEEEETTSCSCCE-EEEECSSSSEECCCCEEEEEEEE
T ss_pred             EEEeCCCCccccCcCeecCCCeEEEEECCCCccccceeEEEEEEEEEcCCCceecc-cEEEehhheEeeCCCCEEEEEEc
Confidence            876654333332211  111335677776653    67899999999999987543 45554333 34999999999844


Q ss_pred             cceEEEEecCCCCCCccceEEEEEEEEcCC--eeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCc
Q psy535          355 NNGFVISWQPPLERASLIQYYLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTP  432 (460)
Q Consensus       355 ~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  432 (460)
                      .+++.|+|++|....+.+.+|+|+|+..+.  |........     ...  .        ..+.......+.+.|.+|.|
T Consensus       212 ~~~l~lsW~~P~~~~~~~l~Yev~y~~~~~~~w~~~~~~~~-----~c~--~--------~~~~~~~~~~~~~~l~~L~p  276 (314)
T 3bpo_C          212 NDDLYVQWENPQNFISRCLFYEVEVNNSQTETHNVFYVQEA-----KCE--N--------PEFERNVENTSCFMVPGVLP  276 (314)
T ss_dssp             TTEEEEEEECCTTCCGGGEEEEEEEEC--CCCEEEEEESCC-----CCC--C--------TTSSCCCSSEEEEEEESCCT
T ss_pred             CCcEEEEEeCCCccCCceEEEEEEEEECCCCcceEEecccc-----ccc--c--------cccccccCCceEEEEccCCC
Confidence            479999999997555567999999997532  332211000     000  0        00000113467889999999


Q ss_pred             CceEEEEEEEeec------CC-CCCCCceeEeecC
Q psy535          433 ATTYEFQVVGKNE------LG-DGMLSNIVVVKTK  460 (460)
Q Consensus       433 ~~~Y~~~v~a~n~------~G-~s~~s~~~~~~T~  460 (460)
                      ++.|.|||+|.+.      .| +|+||.++.+.++
T Consensus       277 ~t~Y~~qVra~~~~~~~~~~g~WS~WS~~~~~~~~  311 (314)
T 3bpo_C          277 DTLNTVRIRVKTNKLCYEDDKLWSNWSQEMSIGKK  311 (314)
T ss_dssp             TSCEEEEEEEEECTTTSCCCCCCCCCCCCEEESCC
T ss_pred             CCEEEEEEEeeecccccCCCCeeCCCCCCeEeccc
Confidence            9999999999995      56 5888888887653

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.77  E-value=4e-18  Score=139.91  Aligned_cols=151  Identities=17%  Similarity=0.250  Sum_probs=102.8

Q ss_pred             ecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEE
Q psy535           68 LPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVL  147 (460)
Q Consensus        68 ~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~  147 (460)
                      +.+|++++|.|.+   |. +.|.|+|+|..+...      ...+++|.|.++..+|+|.|+|.+.+..     +..+.|.
T Consensus        15 ~~~G~~v~L~C~~---p~-~~i~W~k~g~~l~~~------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~-----s~~~~v~   79 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EA-KNITWFKDGKMIGFL------TEDKKKWNLGSNAKDPRGMYQCKGSQNK-----SKPLQVY   79 (204)
T ss_dssp             CCSSSEEEEEECS---CS-SEEEEEETTEEEEEE------ESSCCCEEEEEGGGCCEEEEEEESSSSC-----CCCEEEE
T ss_pred             ecCCCeEEEEEcC---CC-CEEEEEECCEECCCC------CCCCCeEEeCCCCcCCCEEEEEEecCCC-----CeeEEEE
Confidence            4579999999998   43 479999999887531      1235679999999999999999975422     1123343


Q ss_pred             ee---------------------------C----CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc
Q psy535          148 VR---------------------------K----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA  196 (460)
Q Consensus       148 v~---------------------------~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~  196 (460)
                      +.                           .    ++.+...|..  ....|+.++|.|.     +.|.|.+.|++++..+
T Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--v~~~G~~v~L~C~-----g~p~p~i~W~k~~~~l  152 (204)
T 1sy6_A           80 YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYK--VSISGTTVILTCP-----QYPGSEILWQHNDKNI  152 (204)
T ss_dssp             EEC------------------------------------CCCCE--EEEETTEEEEECS-----CCCSSCEEEEETTEEE
T ss_pred             EEEeccccccccccccccccccccccccccccccccceecCCce--eeecCCcEEEEcC-----CCCCCceEEEECCEEC
Confidence            33                           0    1222212211  2238999999996     5678899999955433


Q ss_pred             CCc---ccEEEecceEEEccc-cceeceEEEEEEeccccee-eeeeEEE
Q psy535          197 LPK---NRVKIVGGNITIEGL-RRVDFGYYECVVSNEVATI-VQAAQLV  240 (460)
Q Consensus       197 ~~~---~~~~~~~~~l~i~~~-~~~~~g~y~C~a~n~~g~~-~~~~~l~  240 (460)
                      ...   ..+...++.|.|.++ ...|+|.|+|.|.|..|.. +..+.|.
T Consensus       153 ~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~  201 (204)
T 1sy6_A          153 GGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR  201 (204)
T ss_dssp             SCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEE
T ss_pred             CCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEE
Confidence            221   233345789999999 9999999999999999963 3344443

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.77  E-value=4.8e-18  Score=141.70  Aligned_cols=173  Identities=12%  Similarity=0.232  Sum_probs=112.1

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCC---ee-------------cCccccccEEEee---cCeEEEe
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDK---RL-------------LEPYQTKDIVVMQ---NGSLLFT  117 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~---~~-------------~~~~~~~~~~~~~---~~~l~i~  117 (460)
                      .+...| ...+.+|++++|.|.+.+. +.+ .+.|+|..   ..             .......++....   +.+|.|.
T Consensus         3 ~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   80 (218)
T 3s96_B            3 VLTQSS-SASFSLGASAKLTCTLNSQHSTY-TIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS   80 (218)
T ss_dssp             SEECCS-EEEEETTSCEEEEEEECGGGTTC-CEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred             eEEeCC-cEEECCCCcEEEEEECCCCCCCc-EEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence            344556 7788899999999999987 555 79999831   11             0000112343322   2359999


Q ss_pred             ecCCCCCeEEEEEEEcCCC---CcceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEE
Q psy535          118 RVNQNHQGRYTCTPYNAHG---TQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITW  189 (460)
Q Consensus       118 ~~~~~d~G~y~C~~~~~~g---~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W  189 (460)
                      +++.+|+|.|+|.+.+..|   .......+.|.|.    .+|.+...+... .+..|+.++|.|.+.  ...|.+ .+.|
T Consensus        81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~-~~~~~~~v~L~C~~~--g~~p~~~~v~W  157 (218)
T 3s96_B           81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSS-EELKENKATLVCLIS--NFSPSGVTVAW  157 (218)
T ss_dssp             SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCH-HHHHTTEEEEEEEEE--EEBSSCCEEEE
T ss_pred             cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCc-ccccCCcEEEEEEEC--cccCCCeEEEE
Confidence            9999999999999998765   2223334455555    456666544433 344578999999993  225666 8999


Q ss_pred             EcCCCccCCcc-c---E------EEecceEEEccccceeceEEEEEEecccceeeee
Q psy535          190 QRRDGVALPKN-R---V------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA  236 (460)
Q Consensus       190 ~~~~~~~~~~~-~---~------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  236 (460)
                      ++++ ..+... .   .      ......|.|......|.|.|+|.|.|..+.....
T Consensus       158 ~k~g-~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  213 (218)
T 3s96_B          158 KANG-TPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS  213 (218)
T ss_dssp             EETT-EEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred             EECC-EECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence            9944 444321 0   0      0112346677777778999999999988765543

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.77  E-value=4.9e-18  Score=142.36  Aligned_cols=173  Identities=15%  Similarity=0.167  Sum_probs=116.7

Q ss_pred             eeeecceeeEEEEEEEecCCCC--CeEEEeeCCeecCcc--------------ccccEEE----------eecCeEEEee
Q psy535           65 VQYLPFRLQGVVQCHIKANPTF--QYVTWTKDKRLLEPY--------------QTKDIVV----------MQNGSLLFTR  118 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~--------------~~~~~~~----------~~~~~l~i~~  118 (460)
                      ...+..|++++|.|.+.+.+.+  ..|+|+|++..+...              ...+...          ..+++|.|.+
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   89 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG   89 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence            3456789999999999886654  248999976543210              0111111          1235799999


Q ss_pred             cCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC
Q psy535          119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP  198 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~  198 (460)
                      ++.+|+|.|+|.+.+..+... .....+.+..+|.....+... ....++.+.+.|.+.  .+.|.+.+.|+++++....
T Consensus        90 v~~~D~G~Y~C~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~c~~~--~~~P~~~~~w~~~~~~~~~  165 (225)
T 4fmk_A           90 LRVEDEGNYTCEFATFPNGTR-RGVTWLRVIAQPENHAEAQEV-TIGPQSVAVARCVST--GGRPPARITWISSLGGEAK  165 (225)
T ss_dssp             CCGGGCEEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEEECCB-CCSSSCEEEEEEEEE--EEBSCCEEEEECSSCCEEE
T ss_pred             CCHHHCcceEEEEEeCCCcce-eeeeeeeeecCCceeecccce-eecceeeeeeeeeec--CCCCCCEEEEEECCccccC
Confidence            999999999999998766553 334445555566655554444 456677788888764  6788899999986554432


Q ss_pred             cccEEE-------ecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          199 KNRVKI-------VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       199 ~~~~~~-------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      ......       ..+.|.|..+...|.|.|+|.|.|..+.......+.+
T Consensus       166 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l  215 (225)
T 4fmk_A          166 DTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL  215 (225)
T ss_dssp             EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             CcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence            221111       1235999999999999999999998877655444443

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.76  E-value=1.9e-18  Score=141.70  Aligned_cols=134  Identities=16%  Similarity=0.161  Sum_probs=99.6

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe-eEEcceeeeecceeeEEEEEEEecCCCC--CeEEEeeC
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK-VTFTPTVQYLPFRLQGVVQCHIKANPTF--QYVTWTKD   94 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~   94 (460)
                      +.|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|..+|. +.+.+. ..+.+|+.++|.|.+.+.+++  ..|+|+|+
T Consensus        54 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~-~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~  131 (202)
T 1vca_A           54 STLTMNPVSFGNEHSYLCTATCESRKL-EKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKG  131 (202)
T ss_dssp             EEEEESSCCGGGCSEEEEEEEETTEEE-EEEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEET
T ss_pred             cEEEECcCCHHHCEEEEEEEEECCceE-eeEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeC
Confidence            489999999999999999999987764 6788999987665 334444 667889999999999886443  36999999


Q ss_pred             CeecCcccccc-----EEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc-----eeeEEEEEeeCCCc
Q psy535           95 KRLLEPYQTKD-----IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG-----SSGQMEVLVRKPPA  153 (460)
Q Consensus        95 ~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~-----~~~~~~v~v~~~p~  153 (460)
                      +..+.......     ........|.|..+..+|.|.|+|+|.|..+...     .+..+.|.|.++|.
T Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          132 DHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             TEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             CeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            98875321100     0011223467888888899999999999877632     45677788888875

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.76  E-value=1.3e-16  Score=139.41  Aligned_cols=220  Identities=17%  Similarity=0.203  Sum_probs=147.5

Q ss_pred             ccceeceEEEEEEecccceeeeeeEEEE---ecCCCCCCCceeeeeecceEEEEeecCCCCC-----CCceeeEEEEEEe
Q psy535          214 LRRVDFGYYECVVSNEVATIVQAAQLVV---EGTQPHAPYNITGVATEFSVTLEWLPGYSGG-----PDLKQNYVIWYRE  285 (460)
Q Consensus       214 ~~~~~~g~y~C~a~n~~g~~~~~~~l~v---~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~-----~~~~~~~~~~~~~  285 (460)
                      +.....+.++..|.| .|.+..+....+   ...++.+|. +.......++.|.|.|+...+     ...+..|.+.|++
T Consensus        68 l~~~~~Y~~rV~A~n-~~~S~~s~~~~f~~~~~~~~~pP~-v~~~~~~~si~v~w~P~~~~~~~~~~~g~~l~Y~v~y~~  145 (306)
T 3s98_A           68 LNVYEEIKLRIRAEK-ENTSSWYEVDSFTPFRKAQIGPPE-VHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWK  145 (306)
T ss_dssp             -CTTSCEEEEEEEEC-SSCEEEEECCCBCHHHHCBCCCCE-EEEEECSSCEEEEEECC---CCCC-----CCEEEEEEEE
T ss_pred             cCCCCcEEEEEEEEe-CCcCCCEeeeeEechhhCccCCCe-EEEEEcCCEEEEEEECCCCCCcceeccCCcEEEEEEEEE
Confidence            345567888899999 664433222211   123455554 555555578999999765421     1234788888877


Q ss_pred             cCCCC-eeeeeccCCCCceEEEccCccCccEEEEEEEEc--CCCCCCCCCcEEEEccCCCC-CCCcceEEEeecceEEEE
Q psy535          286 QGNKD-WLPIPVTPPGSTQITINRLTPATTYEFQVVGKN--ELGDGMLSNIVVVKTKGPKP-GPPRNVSVTEVNNGFVIS  361 (460)
Q Consensus       286 ~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n--~~G~~~~s~~~~~~~~~~~P-~~p~~~~~~~~~~~v~l~  361 (460)
                      .+... +. ...   ....+.|.+|.+++.|.+++.|.|  ..|.|..|..+.+.+....| .+|.++.+....+++.|+
T Consensus       146 ~~~~~~~~-~~~---~~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T~~~~p~~~P~~v~~~~~~~s~~l~  221 (306)
T 3s98_A          146 NSSGVEER-IEN---IYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLK  221 (306)
T ss_dssp             TTTCCCEE-EEE---ECTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEECCSCCSSCCCEEEEEEEETTEEEEE
T ss_pred             CCCCCeEE-Eec---ccceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEecCCCcCCCCceEEEEEecCEEEEE
Confidence            65443 33 221   346899999999999999999999  67889999999998877655 688999997777899999


Q ss_pred             ecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeec-cCCCCcceEEECC-CCcCceEEEE
Q psy535          362 WQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP-VTPPGSTQITINR-LTPATTYEFQ  439 (460)
Q Consensus       362 W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~-L~p~~~Y~~~  439 (460)
                      |+++...    .+|.+.|..                 .|.++....+...|..+. -.....+.+.+.+ |.+...|.||
T Consensus       222 W~~p~~~----~~~~v~~~~-----------------gy~~~~~~~~~~~W~~~~~c~~~~~~~c~~~~~~~~~~~Y~~R  280 (306)
T 3s98_A          222 WDYTYAN----MTFQVQWLH-----------------AFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLR  280 (306)
T ss_dssp             EECSSSS----CEEEEEEEE-----------------GGGGSCC----CCCEECGGGTTBSSSEEEEEGGGSCSSEEEEE
T ss_pred             eCCCCCc----EEEEEEEeh-----------------hhhhccccccccCceECCCceeCCCccccCchhhcccCCEEEE
Confidence            9997532    356666652                 233333333455677542 1223556677777 3455599999


Q ss_pred             EEEeecCCCCCCCceeEeecC
Q psy535          440 VVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       440 v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      |+|.|..|.|.+|+.+.|.|.
T Consensus       281 V~A~n~~~~s~~s~~~~~~~~  301 (306)
T 3s98_A          281 VQASDGNNTSFWSEEIKFDTE  301 (306)
T ss_dssp             EEEECSSCBCCCCCCEEEEC-
T ss_pred             EEEccCCCccccccccccCcc
Confidence            999999999999999999874

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.76  E-value=2.6e-17  Score=140.48  Aligned_cols=180  Identities=16%  Similarity=0.207  Sum_probs=117.9

Q ss_pred             EEcceeeeecceeeEEEEEEEecCC-CCCeEEEeeC--CeecC---------------ccccccEEEeecC-----eEEE
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRLLE---------------PYQTKDIVVMQNG-----SLLF  116 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~~-----~l~i  116 (460)
                      ...|....+.+|++++|.|.+.+.+ +.+.+.|+|.  +..+.               .....++....+.     +|.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   84 (253)
T 3uzq_A            5 LEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHL   84 (253)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEe
Confidence            3456677888999999999998753 1247999982  21110               1112344444332     3999


Q ss_pred             eecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC---------------CCceeeCCCcccccCCCCeEEEEeeeeccCC
Q psy535          117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK---------------PPAFTIKPEAMYQRKVGESVDMHCEAQEAEG  181 (460)
Q Consensus       117 ~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~---------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~  181 (460)
                      .+++.+|+|.|+|.+.|..+.. ......|.|..               +|.+...+... .+..|+.++|.|.+   .+
T Consensus        85 ~~v~~~DsG~Y~C~~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~-~v~~G~~v~L~C~~---~~  159 (253)
T 3uzq_A           85 SSLTSGDTAVYYCSRGWEGFAY-WGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASL-AVSLGQRATISCRA---SE  159 (253)
T ss_dssp             CSCCGGGCEEEEEEECSSSCCE-ECCCEEEEECSSSCCCCC---------CCEEEECSEE-EECTTSCEEEEEEE---SS
T ss_pred             CCCCcccCEEEEEEEeeCCccE-ECCCcEEEEecCCccccccccCCCcccceEECcCCeE-EEeCCCCEEEEEEe---cC
Confidence            9999999999999999855443 12233444443               45566656554 68899999999999   67


Q ss_pred             CCCC----eeEEEcCCC-ccCC-------------cccEEEe----cceEEEccccceeceEEEEEEeccccee-eeeeE
Q psy535          182 TQKP----TITWQRRDG-VALP-------------KNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATI-VQAAQ  238 (460)
Q Consensus       182 ~p~~----~~~W~~~~~-~~~~-------------~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~~~  238 (460)
                      .+.+    .+.|++... ....             ..++...    ...|.|.++..+|+|.|.|.+.|..+.. .....
T Consensus       160 ~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~  239 (253)
T 3uzq_A          160 NVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTK  239 (253)
T ss_dssp             CCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEE
T ss_pred             ccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEE
Confidence            7766    899998421 1110             1233322    2259999999999999999999865432 22345


Q ss_pred             EEEecC
Q psy535          239 LVVEGT  244 (460)
Q Consensus       239 l~v~~~  244 (460)
                      |.|...
T Consensus       240 l~v~~~  245 (253)
T 3uzq_A          240 LEIKRP  245 (253)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            566543

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.76  E-value=7.2e-17  Score=137.33  Aligned_cols=176  Identities=14%  Similarity=0.184  Sum_probs=115.5

Q ss_pred             ceeeeecceeeEEEEEEEecCCC-CCeEEEeeCC--eec---------------CccccccEEEeec-----CeEEEeec
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKDK--RLL---------------EPYQTKDIVVMQN-----GSLLFTRV  119 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~---------------~~~~~~~~~~~~~-----~~l~i~~~  119 (460)
                      |....+.+|++++|.|.+.+.|. .+.|.|+|+.  ..+               ......++.+..+     .+|.|.++
T Consensus         9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (247)
T 2ghw_B            9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL   88 (247)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence            34467889999999999998762 3479999842  111               0112245544432     36999999


Q ss_pred             CCCCCeEEEEEEEcCCCCcceeeEEEEEeeCC---------------CceeeCCCcccccCCCCeEEEEeeeeccCCCCC
Q psy535          120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP---------------PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK  184 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~---------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~  184 (460)
                      +.+|+|.|+|.|.|..+.........|.|..+               +.+...+... .+..|+.++|.|.+   .+.+.
T Consensus        89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~---~~~~~  164 (247)
T 2ghw_B           89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATL-SLSPGERATLSCRA---SQSVR  164 (247)
T ss_dssp             CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEE-EECTTSCEEEEEEE---SSCCT
T ss_pred             CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEE-EecCCCcEEEEEEe---CCCcc
Confidence            99999999999998732222222334555533               3344444443 57899999999999   78888


Q ss_pred             CeeEEEcC--CCccC------------CcccEEEe----cceEEEccccceeceEEEEEEeccccee-eeeeEEEEe
Q psy535          185 PTITWQRR--DGVAL------------PKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATI-VQAAQLVVE  242 (460)
Q Consensus       185 ~~~~W~~~--~~~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~~~l~v~  242 (460)
                      +.+.|++.  +..+.            ...++...    ..+|.|.++..+|+|.|.|.|.|..+.. .....|.|.
T Consensus       165 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          165 SNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             ceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            89999983  22210            12333332    2359999999999999999999854322 223345554

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.76  E-value=6.9e-18  Score=138.31  Aligned_cols=130  Identities=16%  Similarity=0.200  Sum_probs=90.4

Q ss_pred             CCeEEEeecCCCCCeeEEEEEEeCC-CC-cceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEE
Q psy535           17 DGTLVINPVGSDDSGLYMCEVSNGI-GE-PQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTW   91 (460)
Q Consensus        17 ~~~L~i~~~~~~d~G~Y~C~~~~~~-~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W   91 (460)
                      ++.|.|.+++.+|+|.|+|.|.|.. |. ..+..+.|.|..   +|.+...+. ..+.+|++++|.|.+.+. . +.+.|
T Consensus        57 ~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~-~-~~v~W  133 (198)
T 1ugn_A           57 KGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPS-PVVNSGGNVTLQCDSQVA-F-DGFIL  133 (198)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEESC-SEEETTCCEEEEEECSSC-C-SEEEE
T ss_pred             ccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCCc-cccCCCCcEEEEEecCCC-C-cEEEE
Confidence            4589999999999999999999976 42 235678888876   345544443 567889999999999887 3 48999


Q ss_pred             eeCCeecCccccccEEEe---ecCeEEEeecCCCCCeEEEEEEEcCCCCc---ceeeEEEEEee
Q psy535           92 TKDKRLLEPYQTKDIVVM---QNGSLLFTRVNQNHQGRYTCTPYNAHGTQ---GSSGQMEVLVR  149 (460)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~g~~---~~~~~~~v~v~  149 (460)
                      +|+|..+.+.........   ..+.|.|.++..+|+|.|+|.|.|..+..   ..+..+.|.|.
T Consensus       134 ~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          134 CKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             EECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            999988753221111111   13579999999999999999999986532   23556666653

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.76  E-value=5.3e-18  Score=139.25  Aligned_cols=123  Identities=17%  Similarity=0.249  Sum_probs=97.0

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCee
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL   97 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~   97 (460)
                      ++|.|.+++.+|+|.|+|.+.|..   .+..+.|.|..+|.+...+. ..+.+|++++|.|.+.+.++.+.++|+|+|..
T Consensus        54 ~~L~i~~v~~~D~G~Y~C~a~n~~---~s~~~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~  129 (204)
T 3sgj_C           54 SSYFIDAATVDDSGEYRCQTQLST---LSDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKG  129 (204)
T ss_dssp             SEEEESSCCGGGCEEEEEEETTSB---CCCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEE
T ss_pred             cEEEEecccccCCEEEEEEeCCCc---ccccEEEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcE
Confidence            489999999999999999998742   35678899988877665555 66778999999999977765568999999988


Q ss_pred             cCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535           98 LEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP  152 (460)
Q Consensus        98 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p  152 (460)
                      +..       ...++.|.|.++..+|+|.|+|.|.|..+.. .+..+.|.|..+|
T Consensus       130 ~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~-~s~~~~l~V~~~~  176 (204)
T 3sgj_C          130 RKY-------FHHNSDFYIPKATLKDSGSYFCRGLVGSKNV-SSETVQITITQGL  176 (204)
T ss_dssp             EEE-------EEECCCEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEEC--
T ss_pred             eec-------ccCCceEEECcCCcccCEEEEEEEEeCCCce-ecCcEEEEEeCcC
Confidence            642       1245689999999999999999999954432 5666777777654

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.76  E-value=1e-16  Score=137.23  Aligned_cols=184  Identities=17%  Similarity=0.269  Sum_probs=114.9

Q ss_pred             EcceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eec--C------------ccccccEEEeecC-----eEEEee
Q psy535           61 FTPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLL--E------------PYQTKDIVVMQNG-----SLLFTR  118 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~--~------------~~~~~~~~~~~~~-----~l~i~~  118 (460)
                      ..|....+.+|++++|.|.+.+.+ +...+.|+|..  ...  .            .....++.+..+.     +|.|.+
T Consensus        13 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   92 (257)
T 3gkz_A           13 QESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKS   92 (257)
T ss_dssp             EEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             ECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECC
Confidence            345556688999999999998853 23479999832  111  0            0112344444322     699999


Q ss_pred             cCCCCCeEEEEEEEcCCCC--cceeeEEEEEeeCC--------------CceeeCCCcccccCCCCeEEEEeeeeccCCC
Q psy535          119 VNQNHQGRYTCTPYNAHGT--QGSSGQMEVLVRKP--------------PAFTIKPEAMYQRKVGESVDMHCEAQEAEGT  182 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~g~--~~~~~~~~v~v~~~--------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~  182 (460)
                      ++.+|+|.|+|.+.|..+.  ........|.|..+              +.+...+... .+..|+.++|.|.+   .+.
T Consensus        93 v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~-~v~~G~~v~L~C~~---~~~  168 (257)
T 3gkz_A           93 VSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIM-SASPGEKVTLTCSA---SSS  168 (257)
T ss_dssp             CCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEE-EECTTCCEEEEEEE---SSC
T ss_pred             CChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceE-EEeCCCcEEEEEEE---ccC
Confidence            9999999999999986221  11222334555443              4555555544 68899999999999   667


Q ss_pred             CCC-eeEEEcCC-CccCC-------------cccEEEe----cceEEEccccceeceEEEEEEeccccee-eeeeEEEEe
Q psy535          183 QKP-TITWQRRD-GVALP-------------KNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATI-VQAAQLVVE  242 (460)
Q Consensus       183 p~~-~~~W~~~~-~~~~~-------------~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~~~l~v~  242 (460)
                      +.+ .+.|++.. +....             ..++...    ..+|.|.++..+|+|.|.|.+.+..... ..-..|.|.
T Consensus       169 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~  248 (257)
T 3gkz_A          169 VSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIK  248 (257)
T ss_dssp             CCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             ccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEE
Confidence            777 99999732 11111             1233222    1259999999999999999998754322 222345565


Q ss_pred             cCCCCC
Q psy535          243 GTQPHA  248 (460)
Q Consensus       243 ~~~p~~  248 (460)
                      ..++.+
T Consensus       249 ~~~~~~  254 (257)
T 3gkz_A          249 RAPHHH  254 (257)
T ss_dssp             CC----
T ss_pred             eCCCCC
Confidence            433433

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.76  E-value=9.5e-18  Score=137.98  Aligned_cols=133  Identities=21%  Similarity=0.310  Sum_probs=99.6

Q ss_pred             ceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcce--eeeEEEEe-------cCCeeEEcceeeeecceeeEEEEEEE
Q psy535           10 TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQA--AQAYLNVE-------FPAKVTFTPTVQYLPFRLQGVVQCHI   80 (460)
Q Consensus        10 ~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~~l~v~-------~~p~~~~~~~~~~~~~g~~~~l~C~~   80 (460)
                      .++....+++|.|.+++.+|+|.|+|.+.+..+....  ..+.+.+.       .+|.+...+....+.+|+.++|.|.+
T Consensus        58 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~  137 (201)
T 3s97_C           58 RRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFA  137 (201)
T ss_dssp             SEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEE
T ss_pred             CeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEc
Confidence            3344445679999999999999999999997655322  23344442       24556555557778899999999999


Q ss_pred             ecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535           81 KANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV  146 (460)
Q Consensus        81 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v  146 (460)
                      .+.|.+ .+.|++++..+..   .......++.|.|.++..+|+|.|+|.|.|..|....+..+.|
T Consensus       138 ~g~p~p-~v~W~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V  199 (201)
T 3s97_C          138 LGNPVP-DIRWRKVLEPMPS---TAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV  199 (201)
T ss_dssp             EEESCC-EEEEEETTBCCCT---TCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCCC-ceEEEeCCCcCCC---ceeecCCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEE
Confidence            998766 8999999997753   2233345668999999999999999999999988655544443

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.76  E-value=1.5e-17  Score=138.06  Aligned_cols=165  Identities=14%  Similarity=0.241  Sum_probs=110.2

Q ss_pred             ceeeeecceeeEEEEEEEecCCC--CCeEEEeeCC--eecC----------ccccccEEEeec---CeEEEeecCCCCCe
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPT--FQYVTWTKDK--RLLE----------PYQTKDIVVMQN---GSLLFTRVNQNHQG  125 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~--~~~~----------~~~~~~~~~~~~---~~l~i~~~~~~d~G  125 (460)
                      |....+.+|++++|.|.+.+.+.  .+.|.|+|++  ..+.          .....++.....   ..|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            77778899999999999988764  3479999953  2220          011234443332   27999999999999


Q ss_pred             EEEEEEEcCCCCcceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcCCCccCCc
Q psy535          126 RYTCTPYNAHGTQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRRDGVALPK  199 (460)
Q Consensus       126 ~y~C~~~~~~g~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~~~~~~~~  199 (460)
                      .|+|.+.+..+.. ......|.|.    .+|.+...+... .+..|+.++|.|.+   .+ .|.+ .+.|++++ ..+..
T Consensus        87 ~Y~C~~~~~~~~~-~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~---~g~~p~~~~v~W~k~g-~~l~~  160 (212)
T 1q0x_L           87 IYFCALWSNNKLV-FGGGTKLTVLGQPKSSPTVTLFPPSS-EELSTAKATLVCTI---TDFYPGVVTVDWKVDG-TPVTA  160 (212)
T ss_dssp             EEEEEEECSSCEE-ECCCEEEEECCSCCBCCEEEEECCCH-HHHTTTEEEEEEEE---EEEBSSCCEEEEEETT-EEECT
T ss_pred             EEEEEEecCchhh-cCCCeEEEEecCCCCCCeeEEeCCCH-HHccCCcEEEEEEE---EEEeCCCeEEEEEECC-EeCCC
Confidence            9999999876532 1222334442    467766644433 34468899999998   44 3443 89999954 33322


Q ss_pred             ccE----EE-------ecceEEEccccceeceEEEEEEeccccee
Q psy535          200 NRV----KI-------VGGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       200 ~~~----~~-------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      ...    ..       ....|.|......|.|.|+|.|.|.....
T Consensus       161 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  205 (212)
T 1q0x_L          161 GMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSS  205 (212)
T ss_dssp             TEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEE
T ss_pred             CeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcce
Confidence            211    11       12357888888889999999999976553

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.76  E-value=3.7e-18  Score=141.58  Aligned_cols=169  Identities=13%  Similarity=0.208  Sum_probs=113.6

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC----------ccccccEEEee---cCeEEEeecCCCCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE----------PYQTKDIVVMQ---NGSLLFTRVNQNHQ  124 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~----------~~~~~~~~~~~---~~~l~i~~~~~~d~  124 (460)
                      ...| ...+.+|++++|.|.+.  +.+ .+.|+|+  +..+.          .....++....   +.+|.|.+++.+|+
T Consensus         5 ~~~~-~~~v~~G~~v~L~C~~~--~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   80 (211)
T 3tv3_L            5 TQPP-SASGSPGQSITISCTGT--SNN-FVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDE   80 (211)
T ss_dssp             BCCS-EEEECTTCEEEEEEECC--CSS-CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             EeCc-eEEEcCCCCEEEEEEEC--CCC-eEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHC
Confidence            3445 67788999999999998  444 7999994  22211          00123333222   23699999999999


Q ss_pred             eEEEEEEEcCCCCcceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC--CCCeeEEEcCCCccCC
Q psy535          125 GRYTCTPYNAHGTQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT--QKPTITWQRRDGVALP  198 (460)
Q Consensus       125 G~y~C~~~~~~g~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--p~~~~~W~~~~~~~~~  198 (460)
                      |.|+|.+.+..+.......+.|.|.    .+|.+...+... .+..|+.++|.|.+   .+.  +.+.+.|++++. .+.
T Consensus        81 G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~---~g~~p~~~~v~W~k~g~-~l~  155 (211)
T 3tv3_L           81 AVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSS-EELQANKATLVCLI---SDFYPGAVTVAWKADSS-PVK  155 (211)
T ss_dssp             EEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCH-HHHHTTCEEEEEEE---EEEBSSCCEEEEEETTE-EEC
T ss_pred             EEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCch-hhhcCCCeEEEEEe---eeecCCCeEEEEEECCe-ecC
Confidence            9999999998762223334455555    577777666544 34479999999998   453  357999999543 332


Q ss_pred             ccc-----------EEEecceEEEccccceeceEEEEEEecccceeeeee
Q psy535          199 KNR-----------VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       199 ~~~-----------~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      ...           .......|.|..+...|.|.|+|.|.|..+.....+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          156 AGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             TTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             CCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence            210           001123588888888899999999999887655443

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.75  E-value=2.2e-17  Score=135.72  Aligned_cols=165  Identities=12%  Similarity=0.214  Sum_probs=111.4

Q ss_pred             eeecceeeEEEEEEEecCC---CCCeEEEeeCCeecCcc----------ccccEEE--eecCeEEEeecCCCCCeEEEEE
Q psy535           66 QYLPFRLQGVVQCHIKANP---TFQYVTWTKDKRLLEPY----------QTKDIVV--MQNGSLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~---~~~~v~W~~~~~~~~~~----------~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~  130 (460)
                      ..+.+|++++|.|.+.+..   +.+.+.|++++..+...          ...+...  ..+.+|.|.+++.+|+|.|+|.
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~   83 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEEE
Confidence            5577899999999985421   22479999998876211          1122322  2345899999999999999999


Q ss_pred             EEcCCCCcce---eeEEEEEeeCC---CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc--E
Q psy535          131 PYNAHGTQGS---SGQMEVLVRKP---PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR--V  202 (460)
Q Consensus       131 ~~~~~g~~~~---~~~~~v~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~--~  202 (460)
                      +.|..|....   ...+.|.|..+   |.+...     ....|+.++|.|.+.  .+.|.|.+.|++++. .+....  .
T Consensus        84 ~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~-----~~~~g~~~~l~C~~~--~g~P~p~i~W~k~g~-~l~~~~~~~  155 (201)
T 1dr9_A           84 VLKYEKDAFKREHLAEVTLSVKADFPTPSISDF-----EIPTSNIRRIICSTS--GGFPEPHLSWLENGE-ELNAINTTV  155 (201)
T ss_dssp             EEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE-----ECSSTTEEEEEEEEE--EESSCEEEEEEESSC-EECCSEEEE
T ss_pred             EEcCCCCccccccccEEEEEEcCCCCCCceEec-----cCCCCCeEEEEEecC--CccCCCEEEEEECCE-ECccccceE
Confidence            9998765533   45677777665   322221     224588999999983  488999999999544 443221  1


Q ss_pred             EEe-c-ceE---EEccccceeceEEEEEEecccceeeeeeE
Q psy535          203 KIV-G-GNI---TIEGLRRVDFGYYECVVSNEVATIVQAAQ  238 (460)
Q Consensus       203 ~~~-~-~~l---~i~~~~~~~~g~y~C~a~n~~g~~~~~~~  238 (460)
                      ... . +.+   .+..+...|.|.|+|.|.|..|..+..+.
T Consensus       156 ~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~  196 (201)
T 1dr9_A          156 SQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN  196 (201)
T ss_dssp             EECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred             EecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence            221 2 222   22445567899999999999888765544

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.75  E-value=1.1e-17  Score=139.34  Aligned_cols=125  Identities=26%  Similarity=0.388  Sum_probs=102.7

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecC---------------CeeEEcceeeeecceeeEEEEEEEec
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP---------------AKVTFTPTVQYLPFRLQGVVQCHIKA   82 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~~   82 (460)
                      ++|.|.+++.+|+|.|+|.+.+..+...+..+.|.|...               |.+...+....+.+|+.+.|.|.+.+
T Consensus        65 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g  144 (218)
T 3k0w_A           65 SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVG  144 (218)
T ss_dssp             SEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEB
T ss_pred             CEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecc
Confidence            389999999999999999999988765566788888755               56777788888999999999999999


Q ss_pred             CCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535           83 NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP  152 (460)
Q Consensus        83 ~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p  152 (460)
                      .|.+ .+.|++++..+...        ..+.|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|...+
T Consensus       145 ~p~~-~v~W~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~s~~~~l~V~~~~  204 (218)
T 3k0w_A          145 SPIP-HYQWFKNELPLTHE--------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQ-DSKKVEIIIDELN  204 (218)
T ss_dssp             SSCC-EEEEEETTEECTTC--------CSSEEEESSCCGGGCEEEEEEEECSSCEE-ECCCEEEEECC--
T ss_pred             cCCC-eEEEEECCEECCCC--------CCCEEEEeecChhcCEEEEEEEEcCCCCc-eeeeEEEEEeCCc
Confidence            8766 79999999988642        23579999999999999999999987764 4556667776543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.75  E-value=4.5e-17  Score=140.86  Aligned_cols=167  Identities=18%  Similarity=0.254  Sum_probs=112.6

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCe-----ecC-------ccccccEEEeecC---eEEEeecCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR-----LLE-------PYQTKDIVVMQNG---SLLFTRVNQ  121 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-----~~~-------~~~~~~~~~~~~~---~l~i~~~~~  121 (460)
                      +.+...|....+.+|++++|.|.+.+.|.+ .+.|+|++.     .+.       .....++....++   +|.|.+++.
T Consensus        13 ~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~-~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           13 IQMTQSPSSLSASVGDRVTITCRASQDVST-AVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCEEEECSEEECCTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             eeEEeCCCeEEEcCCCCEEEEeEcCCCCCC-cEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            445667778889999999999999887754 799998542     110       0112344444333   799999999


Q ss_pred             CCCeEEEEEEEcCCCCcceeeEEEEEeeCCC-------------ce-eeCCCcccccCCCCeEEEEeeeeccCCCC--CC
Q psy535          122 NHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP-------------AF-TIKPEAMYQRKVGESVDMHCEAQEAEGTQ--KP  185 (460)
Q Consensus       122 ~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p-------------~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~p--~~  185 (460)
                      +|+|.|+|.+.|..+.. ......|.|..+|             .+ ...+... .+..|+.++|.|.+   .+.+  .+
T Consensus        92 ~DsG~Y~C~~~n~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~-~v~~G~~v~L~C~~---~g~~~~~~  166 (276)
T 3auv_A           92 EDFATYYCQQHYTTPPT-FGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGG-LVQPGGSLRLSCAA---SGFTISDY  166 (276)
T ss_dssp             GGCEEEEEEECSSSSCC-CCCCEEEEC-----------------CCEEEEECCE-EECTTCCEEEEEEE---ESSCGGGS
T ss_pred             hhCEEEEEEEecCCccc-ccCCEEEEEecCCCccccccccccCcceEEECCCce-EecCCCeEEEEEEe---cCccCCCC
Confidence            99999999999875432 1112334444332             22 2233333 67899999999998   5655  58


Q ss_pred             eeEEEcCCC-ccC------------------CcccEEEec------ceEEEccccceeceEEEEEEecc
Q psy535          186 TITWQRRDG-VAL------------------PKNRVKIVG------GNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       186 ~~~W~~~~~-~~~------------------~~~~~~~~~------~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      .+.|++++. ...                  ...++....      ..|.|.++...|+|.|.|.+.|.
T Consensus       167 ~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          167 WIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             EEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            999998531 110                  123444332      27999999999999999999997

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.75  E-value=1.1e-18  Score=144.71  Aligned_cols=141  Identities=23%  Similarity=0.360  Sum_probs=108.5

Q ss_pred             cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCC-cceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE-ecCC
Q psy535            7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGE-PQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI-KANP   84 (460)
Q Consensus         7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~   84 (460)
                      ...+|+.+.. ++|.|.+++.+|+|.|+|.+.+..|. ..+..+.|.|..+|.+...+....+.+|+.+.|.|.+ .+.|
T Consensus        58 ~~~~r~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p  136 (209)
T 1nbq_A           58 SYEDRVTFLP-TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSP  136 (209)
T ss_dssp             TTTTTCEEET-TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBS
T ss_pred             cccCceEeec-cEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCC
Confidence            4467777754 89999999999999999999998653 2355678888888877655555668889999999997 7777


Q ss_pred             CCCeEEEeeCCeecCccccc-------cEEE-eecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535           85 TFQYVTWTKDKRLLEPYQTK-------DIVV-MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR  149 (460)
Q Consensus        85 ~~~~v~W~~~~~~~~~~~~~-------~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~  149 (460)
                      .+ .+.|++++..+......       ++.. ...+.|.|.++..+|+|.|+|.|.|..|....+..+.|.|.
T Consensus       137 ~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          137 PS-EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             CC-EEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             Cc-eeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence            66 89999999887642211       1111 13457999999999999999999999998755666666553

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.75  E-value=2.4e-17  Score=136.92  Aligned_cols=169  Identities=12%  Similarity=0.229  Sum_probs=112.3

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC---eec---------CccccccEEEeec---CeEEEeecCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK---RLL---------EPYQTKDIVVMQN---GSLLFTRVNQ  121 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~---~~~---------~~~~~~~~~~~~~---~~l~i~~~~~  121 (460)
                      +.+...|....+.+|++++|.|.+.+.+.+ .+.|+|..   ...         ......++.....   .+|.|.+++.
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   80 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISN-YLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLES   80 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCc-eEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCc
Confidence            345556777889999999999999998654 79999832   110         0011234443322   3799999999


Q ss_pred             CCCeEEEEEEEcCCCCcceeeEEEEEe---eCCCceeeCCCcccccCCCCeEEEEeeeeccCCCC--CCeeEEEcCCCcc
Q psy535          122 NHQGRYTCTPYNAHGTQGSSGQMEVLV---RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ--KPTITWQRRDGVA  196 (460)
Q Consensus       122 ~d~G~y~C~~~~~~g~~~~~~~~~v~v---~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p--~~~~~W~~~~~~~  196 (460)
                      +|+|.|+|.+.+..+.. ......|.|   ..+|.+...+... .+..|+.++|.|.+   .+.+  .+.+.|++++. .
T Consensus        81 ~D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~~~~v~l~C~~---~g~~p~~~~v~W~k~g~-~  154 (213)
T 3r06_A           81 EDIGSYYCQQYYNYPWT-FGPGTKLEIKRADAKPTVSIFPPSS-EQLGTGSATLVCFV---NNFYPKDINVKWKVDGS-E  154 (213)
T ss_dssp             GGCSEEEEEECSSSSCE-ECCCEEEEECCCCBCCEEEEECCCH-HHHTTTEEEEEEEE---EEEBSSCEEEEEEETTE-E
T ss_pred             ccCEEEEEecccCCceE-EcCCceEEEeccCCCceeeeeCCCc-eecCCCCcEEEEEE---eeecCCceEEEEEECCc-c
Confidence            99999999998865432 222334555   4567777665554 45568889999998   4433  34899999543 3


Q ss_pred             CCccc-EE-----------EecceEEEccccceeceEEEEEEecccce
Q psy535          197 LPKNR-VK-----------IVGGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       197 ~~~~~-~~-----------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      +.... ..           .....|.|......|.|.|+|.|.|....
T Consensus       155 l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~  202 (213)
T 3r06_A          155 KRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST  202 (213)
T ss_dssp             ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             cCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence            33211 00           01124667777778899999999997544

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.75  E-value=8e-18  Score=135.08  Aligned_cols=124  Identities=22%  Similarity=0.226  Sum_probs=96.4

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCee
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRL   97 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~   97 (460)
                      ++|.|.+++.+|+|.|+|.+.+..+   +..+.|.|..++.... +....+.+|+++.|.|.+.+.++.+.+.|+++|..
T Consensus        51 ~~L~i~~v~~~d~G~Y~C~~~~~~~---s~~~~l~V~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~  126 (176)
T 1f2q_A           51 SSLNIVNAKFEDSGEYKCQHQQVNE---SEPVYLEVFSDWLLLQ-ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEA  126 (176)
T ss_dssp             SEEEECSCCGGGCEEEEEECTTSSC---CCCEEEEEECSSEEEE-ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEE
T ss_pred             eEEEEeccceecCEEEEEEcCCccc---cccEEEEEeCcceeec-CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEE
Confidence            4899999999999999999988554   4567788875554433 33456779999999999965555458999999998


Q ss_pred             cCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCc
Q psy535           98 LEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA  153 (460)
Q Consensus        98 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~  153 (460)
                      +...       ..++.|.|.++..+|+|.|+|.|.|..+.. .+..+.|.|..+|.
T Consensus       127 ~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          127 LKYW-------YENHNISITNATVEDSGTYYCTGKVWQLDY-ESEPLNITVIKAPR  174 (176)
T ss_dssp             CCSC-------CCSSEEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEECSCC
T ss_pred             Eeee-------cCCCeEEECCCCcccCEEEEEEEEeCCcce-EecCEEEEEecCCC
Confidence            7521       134679999999999999999999974433 55667788887774

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.75  E-value=4.2e-17  Score=139.36  Aligned_cols=170  Identities=16%  Similarity=0.171  Sum_probs=113.1

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eecC-----------ccccccEEEe-----ecCeEEEeec
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLLE-----------PYQTKDIVVM-----QNGSLLFTRV  119 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~-----------~~~~~~~~~~-----~~~~l~i~~~  119 (460)
                      .+...|....+.+|++++|.|.+.+.+.+ .+.|+|..  ....           .....++...     ...+|.|.++
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   83 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKYSYSATP-YLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV   83 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCC-EEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred             EEEecCceEEecCCCeEEEEEEeCCCCCc-eEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence            34556677888999999999999887655 79999832  1110           0012233331     1236999999


Q ss_pred             CCCCCeEEEEEEEcCCCCcc--eeeEEEEEeeC--------------------CCceeeCCCcccccCCCCeEEEEeeee
Q psy535          120 NQNHQGRYTCTPYNAHGTQG--SSGQMEVLVRK--------------------PPAFTIKPEAMYQRKVGESVDMHCEAQ  177 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~~g~~~--~~~~~~v~v~~--------------------~p~~~~~~~~~~~~~~g~~~~l~C~~~  177 (460)
                      +.+|+|.|+|.+.+..+...  ......|.|..                    +|.+...|... .+..|+.++|.|.+ 
T Consensus        84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~-~v~~G~~v~L~C~~-  161 (256)
T 3tf7_C           84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNK-VTVTGENVTLSCRQ-  161 (256)
T ss_dssp             CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEE-EEETTCCEEECEEE-
T ss_pred             CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEE-EEeCCCcEEEEEEc-
Confidence            99999999999998754221  12223444443                    55666666654 57789999999998 


Q ss_pred             ccCCCCCCeeEEEcCCCccCC-----------------cccEEEe-----cceEEEccccceeceEEEEEEeccccee
Q psy535          178 EAEGTQKPTITWQRRDGVALP-----------------KNRVKIV-----GGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       178 ~~~~~p~~~~~W~~~~~~~~~-----------------~~~~~~~-----~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                        .+. .+.+.|++.......                 ..++...     ..+|.|.++..+|+|.|.|.|.|..|..
T Consensus       162 --~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~  236 (256)
T 3tf7_C          162 --TNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQL  236 (256)
T ss_dssp             --CSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEE
T ss_pred             --CCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCcc
Confidence              454 679999973211100                 1112211     2369999999999999999999876653

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.75  E-value=8.3e-18  Score=138.39  Aligned_cols=138  Identities=17%  Similarity=0.220  Sum_probs=100.3

Q ss_pred             CcccCcccceEEEeeC------CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEE
Q psy535            2 NTKVGSLETRVVIKKD------GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGV   75 (460)
Q Consensus         2 ~~~~~~~~~r~~~~~~------~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~   75 (460)
                      +..+....+|+.+..+      ++|.|.+++.+|+|.|+|.|.+..+.. ...+.|.|..++..... ....+.+|+.+.
T Consensus        45 ~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~p~~-~~~~~~~g~~v~  122 (202)
T 3bp6_B           45 ENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWD-YKYLTVKVKASYMRIDT-RILEVPGTGEVQ  122 (202)
T ss_dssp             C--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCCCEEE-EEEECTTTCCEE
T ss_pred             CCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCCCcc-eEEEEEEecCCCCcccE-EEEecCCCCeEE
Confidence            3445566788888765      589999999999999999999988764 67788888765421110 112456799999


Q ss_pred             EEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535           76 VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV  146 (460)
Q Consensus        76 l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v  146 (460)
                      |.|.+.|.|.+ .+.|++++..+..    ......++   .+.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus       123 l~C~~~g~P~p-~v~W~~~~~~~~~----~~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v  191 (202)
T 3bp6_B          123 LTCQARGYPLA-EVSWQNVSVPANT----SHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP  191 (202)
T ss_dssp             EEEEEEEBSCC-EEEETTCCSCCEE----EEEECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC
T ss_pred             EEEEccccCCc-eEEEEeCCCCccC----ceeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEe
Confidence            99999998775 8999998876531    11222222   3567789999999999999999998655554444

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.75  E-value=9.3e-17  Score=137.32  Aligned_cols=177  Identities=15%  Similarity=0.220  Sum_probs=115.6

Q ss_pred             ceeeeecceeeEEEEEEEecCCC-CCeEEEeeC--CeecC---------------ccccccEEEeecC-----eEEEeec
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKD--KRLLE---------------PYQTKDIVVMQNG-----SLLFTRV  119 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~~-----~l~i~~~  119 (460)
                      +....+.+|++++|.|.+.+.+. .+.+.|+|.  +..+.               .....++....+.     +|.|.++
T Consensus         9 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (256)
T 3umt_A            9 SGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL   88 (256)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence            33456889999999999988641 247999973  22110               1112344444332     3999999


Q ss_pred             CCCCCeEEEEEEEcCCC--CcceeeEEEEEeeC----------------CCceeeCCCcccccCCCCeEEEEeeeeccCC
Q psy535          120 NQNHQGRYTCTPYNAHG--TQGSSGQMEVLVRK----------------PPAFTIKPEAMYQRKVGESVDMHCEAQEAEG  181 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~~g--~~~~~~~~~v~v~~----------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~  181 (460)
                      +.+|+|.|+|.+.+..+  .........|.|..                +|.+...|... .+..|+.++|.|.+   .+
T Consensus        89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~v~~G~~v~L~C~~---~~  164 (256)
T 3umt_A           89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSL-SASLGERVSITCRA---SQ  164 (256)
T ss_dssp             CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEE-EECTTCCEEEEEEE---SS
T ss_pred             CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeE-EEECCCCEEEEEEE---ec
Confidence            99999999999988621  11122234455553                56666666654 68899999999999   67


Q ss_pred             CCCCeeEEEcCCC--ccC------------CcccEEEe----cceEEEccccceeceEEEEEEeccccee-eeeeEEEEe
Q psy535          182 TQKPTITWQRRDG--VAL------------PKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVATI-VQAAQLVVE  242 (460)
Q Consensus       182 ~p~~~~~W~~~~~--~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~~~l~v~  242 (460)
                      .+.+.+.|++...  .+.            ...++...    ..+|.|.++...|+|.|.|.+.|..... .....|.|.
T Consensus       165 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~  244 (256)
T 3umt_A          165 DIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIK  244 (256)
T ss_dssp             CCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEE
Confidence            7888999998421  110            01233322    1259999999999999999999854332 233455665


Q ss_pred             c
Q psy535          243 G  243 (460)
Q Consensus       243 ~  243 (460)
                      .
T Consensus       245 ~  245 (256)
T 3umt_A          245 R  245 (256)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.75  E-value=4.1e-17  Score=138.15  Aligned_cols=166  Identities=14%  Similarity=0.143  Sum_probs=110.5

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eecC----------ccccccEEEeec---CeEEEeecCCC
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLLE----------PYQTKDIVVMQN---GSLLFTRVNQN  122 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~----------~~~~~~~~~~~~---~~l~i~~~~~~  122 (460)
                      .+...|....+.+|++++|.|.+.+.+.+ .+.|+|+.  ....          .....++.....   .+|.|.+++.+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRASQSIGN-NLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE   81 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEeCCCCCc-eEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChH
Confidence            34567777889999999999999887754 79999953  1110          001234443322   36999999999


Q ss_pred             CCeEEEEEEEcCCCCcceeeEEEEEeeCCCc-------------eeeCCCcccccCCCCeEEEEeeeeccCCCC--CCee
Q psy535          123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA-------------FTIKPEAMYQRKVGESVDMHCEAQEAEGTQ--KPTI  187 (460)
Q Consensus       123 d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~-------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p--~~~~  187 (460)
                      |+|.|+|.+.|..+.. ......|.|..+|.             ....+... .+..|+.++|.|.+   .+.+  .+.+
T Consensus        82 D~G~Y~C~~~n~~~~~-~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~---~g~~~~~~~v  156 (242)
T 2znx_A           82 DFGMYFCQQSNSXPYT-FGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPS-LVKPSQTLSLTCSV---TGDSITSDYX  156 (242)
T ss_dssp             GCEEEEEEECSSSSCE-ECCCEEEEEC---------------CCEEEEECCS-EECTTSCEEEEEEE---ESSCGGGSCE
T ss_pred             HCEEEEEeEecCCceE-ECCCEEEEEcCCCCCCcccccccccceeeecCCcc-eecCCCeEEEEEEE---EccccCCcce
Confidence            9999999999875432 22234555555542             22222233 57899999999998   5554  5789


Q ss_pred             EEEcCC-CccC-----------------CcccEEEe------cceEEEccccceeceEEEEEEecc
Q psy535          188 TWQRRD-GVAL-----------------PKNRVKIV------GGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       188 ~W~~~~-~~~~-----------------~~~~~~~~------~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      .|++.+ +..+                 ...++...      ..+|.|.++..+|+|.|.|.|.|.
T Consensus       157 ~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          157 SXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             EEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             eeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            999843 1111                 12344432      137999999999999999999873

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.75  E-value=1e-17  Score=142.62  Aligned_cols=173  Identities=16%  Similarity=0.211  Sum_probs=109.3

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCC----eEEEeeCCeecCcc------ccccEEE-------------eecCeEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQ----YVTWTKDKRLLEPY------QTKDIVV-------------MQNGSLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~----~v~W~~~~~~~~~~------~~~~~~~-------------~~~~~l~i~~  118 (460)
                      .|....+.+|++++|.|.+.+.|++.    .+.|++++......      .......             ..+.+|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            44556788899999999998876652    49999964322100      0000000             0123599999


Q ss_pred             cCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcCCCcc
Q psy535          119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRRDGVA  196 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~~~~~  196 (460)
                      ++.+|+|.|+|.+.+..+.  ....+.|.|..+|.+.+.+..  .+..|..+.|.|.+   .+ .|.+ .+.|++++..+
T Consensus        89 v~~~D~G~Y~C~~~~~~~~--~~~~~~L~V~~~P~v~~~~~~--~~~~~~~~~L~C~~---~g~~P~pi~v~W~k~g~~l  161 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLK--AQGTVQLEVVASPASRLLLDQ--VGMKENEDKYMCES---SGFYPEAINITWEKQTQKF  161 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEE--EEEEEEEEEEBCCEEEEECC----------CEEEEEE---EEEBSSCCEEEEEEECSSS
T ss_pred             CCHHHCeEEEEEEEeCCcc--ceeEEEEEEecCCceEEecCC--ccccCCCcEEEEEE---ccEECCCeEEEEEECCccC
Confidence            9999999999999987665  345666777778888776654  34567888899999   45 7888 99999965422


Q ss_pred             CCcc---------cEE-------EecceEEEccccceeceEEEEEEeccccee--eeeeEEEE
Q psy535          197 LPKN---------RVK-------IVGGNITIEGLRRVDFGYYECVVSNEVATI--VQAAQLVV  241 (460)
Q Consensus       197 ~~~~---------~~~-------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~--~~~~~l~v  241 (460)
                      ....         ...       .....|.+......|.|.|+|.|.|..+..  ...+.|.|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          162 PHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             CSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             CCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            1110         011       112357777788888999999999988764  34444555

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.74  E-value=1e-16  Score=151.01  Aligned_cols=161  Identities=17%  Similarity=0.176  Sum_probs=101.6

Q ss_pred             ceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCcc-ccccEEEeec------CeEEEeecCCCCCeEEEEEEEcC
Q psy535           63 PTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPY-QTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~-~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      |....+.+|+.++|.|.+.+. |+...|+|+++|..+... .........+      +.|.|..+..+|.|.|+|.|.|.
T Consensus       304 p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~  383 (512)
T 1zvo_C          304 PAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHP  383 (512)
T ss_pred             CChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeC
Confidence            333345679999999999886 434579999999876411 1111111122      35889989999999999999998


Q ss_pred             CCCcceeeEEEEEe----eCCCceeeCCCcccccCCCCeEE-EEeeeeccCCC-CC-CeeEEEcCCCccCCcccEE----
Q psy535          135 HGTQGSSGQMEVLV----RKPPAFTIKPEAMYQRKVGESVD-MHCEAQEAEGT-QK-PTITWQRRDGVALPKNRVK----  203 (460)
Q Consensus       135 ~g~~~~~~~~~v~v----~~~p~~~~~~~~~~~~~~g~~~~-l~C~~~~~~~~-p~-~~~~W~~~~~~~~~~~~~~----  203 (460)
                      .+... ...+.+..    ..+|.+.+.+...    .|+.+. |.|.+   .|. |. ..+.|++++. .+......    
T Consensus       384 ~~~~~-~~~~~~~~~~~~~~~p~v~~~~~~~----~~~~~~~L~C~~---~g~~P~~i~v~W~k~g~-~~~~~~~~~~~~  454 (512)
T 1zvo_C          384 SLPPQ-RLMALREPAAQAPVKLSLNLLASSD----PPEAASWLLCEV---SGFSPPNILLMWLEDQR-EVNTSGFAPARP  454 (512)
T ss_pred             CCCCC-ceeEEeecCCCCCCCCEEEEEccCc----CCCCceEEEEEE---eeeCCCCcEEEEEECCe-ECcCccccccce
Confidence            76543 33333221    2456655443321    688899 99999   564 43 3689999543 44322111    


Q ss_pred             -E-ecc-------eEEEccccceeceEEEEEEecccce
Q psy535          204 -I-VGG-------NITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       204 -~-~~~-------~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                       . .++       .|.+......+.|.|+|.|.|....
T Consensus       455 ~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~  492 (512)
T 1zvo_C          455 PPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSR  492 (512)
T ss_pred             eECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCC
Confidence             1 122       2445555555699999999987654

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.74  E-value=7.6e-18  Score=145.34  Aligned_cols=195  Identities=15%  Similarity=0.182  Sum_probs=105.0

Q ss_pred             cCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC---
Q psy535           25 VGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE---   99 (460)
Q Consensus        25 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~---   99 (460)
                      ..++|.+.|.|.+.+..|.. ...      ....+...|....+.+|++++|.|.+.+ +. ..+.|+|.  +....   
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~-~~~------~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~-~~v~W~k~~~~~~~~~~~   73 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGS-GGG------GGMKVIQTPRYLVKGQGQKAKMRCIPEK-GH-PVVFWYQQNKNNEFKFLI   73 (270)
T ss_dssp             --------------------------------CCCEEECSEEEEETTSCEEEEEECCT-TC-CEEEEEEECTTCCEEEEE
T ss_pred             chhhhHHHHHHHHhccCCcc-ccc------cceeEEeCCCeEEEcCCCCEEEEEEecC-CC-ceEEEEEECCCCCcEEEE
Confidence            35789999999999877653 222      2233455677788899999999999865 33 47999982  21100   


Q ss_pred             ccc----------cc-cEEEee----cCeEEEeecCCCCCeEEEEEEEcCCCC--cceeeEEEEEeeC------CCceee
Q psy535          100 PYQ----------TK-DIVVMQ----NGSLLFTRVNQNHQGRYTCTPYNAHGT--QGSSGQMEVLVRK------PPAFTI  156 (460)
Q Consensus       100 ~~~----------~~-~~~~~~----~~~l~i~~~~~~d~G~y~C~~~~~~g~--~~~~~~~~v~v~~------~p~~~~  156 (460)
                      ...          .. ++....    +.+|.|.+++.+|+|.|+|.+.+....  ........|.|..      +|.+.+
T Consensus        74 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~  153 (270)
T 3qib_D           74 NFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAV  153 (270)
T ss_dssp             EEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEE
T ss_pred             EECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEE
Confidence            000          00 343332    347999999999999999999864321  1122223444443      455444


Q ss_pred             CCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcCCCccCCcccEE----------------EecceEEEcccccee
Q psy535          157 KPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRRDGVALPKNRVK----------------IVGGNITIEGLRRVD  218 (460)
Q Consensus       157 ~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~~  218 (460)
                      .+.....+..|+.++|.|.+   .+ .|.+ .+.|+++ +..+......                .....|.|......|
T Consensus       154 ~~~~~~~~~~g~~v~L~C~~---~g~~P~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d  229 (270)
T 3qib_D          154 FEPSEAEISHTQKATLVCLA---TGFYPDHVELSWWVN-GKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQN  229 (270)
T ss_dssp             EECCHHHHHHHSEEEEEEEE---EEEBSSCEEEEEEET-TEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHS
T ss_pred             ECCCccccccCCceEEEEEe---cceeCCCeEEEEEEC-CEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhcc
Confidence            32222244569999999998   44 6666 8999994 4444321110                112346666666666


Q ss_pred             -ceEEEEEEecccce
Q psy535          219 -FGYYECVVSNEVAT  232 (460)
Q Consensus       219 -~g~y~C~a~n~~g~  232 (460)
                       .|.|+|.+.|....
T Consensus       230 ~~g~YtC~v~~~~l~  244 (270)
T 3qib_D          230 PRNHFRCQVQFYGLS  244 (270)
T ss_dssp             TTCEEEEEEEECCBC
T ss_pred             CCCeEEEEEEecCCC
Confidence             89999999987554

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.74  E-value=3.2e-18  Score=140.00  Aligned_cols=116  Identities=13%  Similarity=0.111  Sum_probs=77.7

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK   93 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~   93 (460)
                      +.|.|.+++.+|+|.|+|.|.|..|.. .+..+.|.|..   +|.+...+. ..+.+|++++|.|.+.+.|  +.+.|+|
T Consensus        58 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~p--~~~~W~k  134 (196)
T 2d3v_A           58 ARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPS-PVVTSGENVTLQCGSRLRF--DRFILTE  134 (196)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC--SEEEEEE
T ss_pred             cEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCC-ccccCCCcEEEEEEcCCCC--CEEEEEc
Confidence            489999999999999999999976632 25567888876   455544443 4678899999999999887  3799999


Q ss_pred             CCeecCccccccEEEe---ecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           94 DKRLLEPYQTKDIVVM---QNGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        94 ~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      +|..+.+.........   ..+.|.|.+++.+|+|.|+|.|.|..+
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          135 EGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             C---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             cCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            9988753211111111   125799999999999999999998654

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.74  E-value=1.5e-17  Score=138.66  Aligned_cols=170  Identities=13%  Similarity=0.156  Sum_probs=109.7

Q ss_pred             cceeeeecceeeEEEEEEEecCC-CCCeEEEeeC--CeecC---------------ccccccEEEee-----cCeEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRLLE---------------PYQTKDIVVMQ-----NGSLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~~---------------~~~~~~~~~~~-----~~~l~i~~  118 (460)
                      .|....+.+|++++|.|.+.+.+ ..+.+.|+|+  +..+.               .....++....     ..+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (219)
T 1c1e_H            6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN   85 (219)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred             CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence            35556788999999999998865 2357999996  33221               01124444433     24799999


Q ss_pred             cCCCCCeEEEEEEEcCCCCc--ceeeEEEEEeeC----CCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEE
Q psy535          119 VNQNHQGRYTCTPYNAHGTQ--GSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQ  190 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~g~~--~~~~~~~v~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~  190 (460)
                      ++.+|+|.|+|.+.+..+..  .....+.|.|..    +|.+...+... .+..|+.++|.|.+   .+ .|.| .+.|+
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~---~g~~P~p~~v~W~  161 (219)
T 1c1e_H           86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGS-AAQTNSMVTLGCLV---KGYFPEPVTVTWN  161 (219)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCS-SSCCSSEEEEEEEE---EEEBSSCCEEEEG
T ss_pred             CCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCcc-ccccCCeEEEEEEc---ccccCCCeEEEEE
Confidence            99999999999999876321  122233444443    25554433322 46789999999999   56 7888 99999


Q ss_pred             cCCCccCC---cccEE-----EecceEEEccccceeceEEEEEEecccceeeeee
Q psy535          191 RRDGVALP---KNRVK-----IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       191 ~~~~~~~~---~~~~~-----~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      +++. .+.   .....     ...+.|.|.... .|.|.|+|.|.|..+......
T Consensus       162 ~~g~-~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~~~~~  214 (219)
T 1c1e_H          162 SGSL-SSGVHTFPAVLQSDLYTLSSSVTVPSSP-RPSETVTCNVAHPASSTKVDK  214 (219)
T ss_dssp             GGTB-CTTEEECCCEESSSCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTEEEEE
T ss_pred             eCCc-ccceEecCCcccCCeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCccEEE
Confidence            8543 321   01100     112357774444 356999999999887654433

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.74  E-value=2e-17  Score=138.31  Aligned_cols=142  Identities=21%  Similarity=0.311  Sum_probs=95.9

Q ss_pred             cccceEEEeeC------CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE
Q psy535            7 SLETRVVIKKD------GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI   80 (460)
Q Consensus         7 ~~~~r~~~~~~------~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~   80 (460)
                      ...+|+.+..+      ++|.|.+++.+|+|.|+|.|.+ .+. ....+.|.|..++..........+.+|+.+.|.|.+
T Consensus        63 ~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~-~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~  140 (222)
T 3sbw_C           63 SYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY-GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQA  140 (222)
T ss_dssp             GGSSSEEECHHHHTTTEEEEEESSCCGGGCEEEEEEEES-SSE-EEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEE
T ss_pred             cccCceEEccccccCCEEEEEEcCcccccCeEEEEEEEe-CCC-ceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEe
Confidence            34578888655      3899999999999999999999 443 366788888876654322222356789999999999


Q ss_pred             ecCCCCCeEEEeeC-CeecCccccccEEEeecCeEEEe---ecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCc
Q psy535           81 KANPTFQYVTWTKD-KRLLEPYQTKDIVVMQNGSLLFT---RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA  153 (460)
Q Consensus        81 ~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~  153 (460)
                      .|.|.+ .++|+++ +..+............++.+.+.   .+..+|+|.|+|.|.|..|.....  +.|.|..+|.
T Consensus       141 ~g~P~p-~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~--~~l~v~~~p~  214 (222)
T 3sbw_C          141 EGYPKA-EVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHT--AELVIPELPL  214 (222)
T ss_dssp             EEBSCC-EEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEE--EEEECCCC--
T ss_pred             cCCCCC-eEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeE--EEEEecCCcc
Confidence            998765 8999998 55543211111112223333322   456789999999999999876544  4455555553

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.74  E-value=6e-18  Score=128.12  Aligned_cols=118  Identities=27%  Similarity=0.454  Sum_probs=97.1

Q ss_pred             EEEEcCCCCCCCCC-cEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCC
Q psy535          319 VVGKNELGDGMLSN-IVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPE  396 (460)
Q Consensus       319 ~~a~n~~G~~~~s~-~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~  396 (460)
                      |.|.|..|.+..|. .+.+.+....|.+|.++.+...+ +++.|+|++|...++.|.+|.|+|+..+...          
T Consensus         3 V~A~n~~G~g~~S~~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~----------   72 (130)
T 1wfo_A            3 SGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTA----------   72 (130)
T ss_dssp             CCCCCCCCCCCCCCCCSCCCCSCCCCCCCCCCEEEEECSSEEEEECCCCSCCCSCCCEEEEEEEESSCCC----------
T ss_pred             eEEEecccCCCCCCCcEEEEcCCCCCCCCCceEEEecCCCEEEEEEcCCCCCCCceEEEEEEEEECCCCC----------
Confidence            56889999998887 48888888889999999998877 6999999999877889999999999754200          


Q ss_pred             cccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                                   ..|. ........+.+.|.+|.|++.|.|+|+|.|..|.|++|+.+.++|.
T Consensus        73 -------------~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  122 (130)
T 1wfo_A           73 -------------NTAT-VEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTE  122 (130)
T ss_dssp             -------------SCCC-EEEECTTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEECCS
T ss_pred             -------------ceEE-EEEeCCCceEEEEcCCCCCCEEEEEEEEEeCCcCCCCcccEEEecC
Confidence                         0010 0122356789999999999999999999999999999999998884

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.74  E-value=2.5e-17  Score=132.08  Aligned_cols=155  Identities=12%  Similarity=0.134  Sum_probs=104.7

Q ss_pred             eeeeecceeeEEEEEEEecCCCCCeEEEeeC-CeecC------------ccccccEEE-eecCeEEEeecCCCCCeEEEE
Q psy535           64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKD-KRLLE------------PYQTKDIVV-MQNGSLLFTRVNQNHQGRYTC  129 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~-~~~~~------------~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C  129 (460)
                      ....+.+|++++|.|.+.+..+.+.|.|+|+ +..+.            .....|+.+ ..+++|.|.+++.+|+|.|+|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C   86 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM   86 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence            3456788999999999855222357999994 32221            111245555 466789999999999999999


Q ss_pred             EEEcCCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceE
Q psy535          130 TPYNAHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNI  209 (460)
Q Consensus       130 ~~~~~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l  209 (460)
                      .+.+..   .....+.|.|..++..   |..  . ..+..++|.|.+.  .+ |.|.+.|++++. .+.    ...+.++
T Consensus        87 ~v~~~~---~~~~~~~L~V~~~~~~---P~i--~-~~~~~v~L~C~~~--~g-p~p~i~W~~~~~-~l~----~~~~~~l  149 (180)
T 2dru_A           87 RMLHET---EDQWKITMEVYEMVSK---PMI--Y-WECSNATLTCEVL--EG-TDVELKLYQGKE-HLR----SLRQKTM  149 (180)
T ss_dssp             EEESSS---EEEEEEEEEEECCCCC---CEE--E-EEGGGTEEEEECS--SC-TTCEEEEEETTE-EEE----EESSSEE
T ss_pred             EEEcCC---eEEEEEEEEEECCCCC---CEE--E-ecCCCEEEEEEeC--CC-CCCEEEEEECCe-ECc----CCCCCEE
Confidence            997755   3455666777655321   111  1 1345699999983  44 899999999544 332    2233455


Q ss_pred             EEccccceeceEEEEEEecccceeeeee
Q psy535          210 TIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       210 ~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      .+..  ..|.|.|+|.|.|..+......
T Consensus       150 ~~~~--~~d~g~Y~C~a~N~~~~~~~~~  175 (180)
T 2dru_A          150 SYQW--TNLRAPFKCKAVNRVSQESEME  175 (180)
T ss_dssp             EEEC--SCCSSCEEEEEEETTEEEEEEE
T ss_pred             EEEE--hhcCccEEEEEecCcCccccce
Confidence            5532  6789999999999998766554

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.74  E-value=1e-16  Score=136.67  Aligned_cols=165  Identities=19%  Similarity=0.307  Sum_probs=109.5

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCe-----ec-------CccccccEEEeecC---eEEEeecCCC
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR-----LL-------EPYQTKDIVVMQNG---SLLFTRVNQN  122 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-----~~-------~~~~~~~~~~~~~~---~l~i~~~~~~  122 (460)
                      .+...|....+.+|++++|.|.+.+.+.+ .+.|+|+..     .+       ......++.....+   +|.|.+++.+
T Consensus         6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   84 (250)
T 3esu_F            6 VLIQSTSSLSASLGDRVTISCRASQDIRN-YLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE   84 (250)
T ss_dssp             CEECSCSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eEEecCCEEEeeCCCcEEEEEEecccCCc-eEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence            34456777788999999999999998776 799999431     00       01112344333322   6999999999


Q ss_pred             CCeEEEEEEEcCCCCcceeeEEEEEeeCC-------------------CceeeCCCcccccCCCCeEEEEeeeeccCCCC
Q psy535          123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKP-------------------PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ  183 (460)
Q Consensus       123 d~G~y~C~~~~~~g~~~~~~~~~v~v~~~-------------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p  183 (460)
                      |+|.|+|.+.|..+... .....|.|..+                   +.....+... .+..|+.++|.|.+   .+.+
T Consensus        85 D~G~Y~C~~~n~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~---~~~~  159 (250)
T 3esu_F           85 DIGTYFCQQGNTLPWTF-GGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPE-LVKPGASVKISCKD---SGYA  159 (250)
T ss_dssp             GCEEEEEEECSSSSCEE-CCCEEEEEC------------------------CEECCCE-EECTTCCEEEEEEC---CSTT
T ss_pred             hCEEEEEEEeeCCCceE-CCCEEEEEECCCCcccccccccccccCcccceEEecCCce-EEcCCceEEEEEEe---cCCc
Confidence            99999999998655431 22234444432                   2222333333 57899999999998   5655


Q ss_pred             --CCeeEEEcCC-CccC------------------CcccEEEec------ceEEEccccceeceEEEEEEec
Q psy535          184 --KPTITWQRRD-GVAL------------------PKNRVKIVG------GNITIEGLRRVDFGYYECVVSN  228 (460)
Q Consensus       184 --~~~~~W~~~~-~~~~------------------~~~~~~~~~------~~l~i~~~~~~~~g~y~C~a~n  228 (460)
                        .+.+.|+++. +..+                  ...++....      .+|.|.++..+|+|.|.|.+.+
T Consensus       160 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          160 FSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             GGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence              7899999852 1111                  012333321      1599999999999999999997

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.74  E-value=1.1e-17  Score=141.99  Aligned_cols=168  Identities=14%  Similarity=0.136  Sum_probs=94.8

Q ss_pred             CCeEEEeecCCCCCeeEEEEEEeCCC----CcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeE
Q psy535           17 DGTLVINPVGSDDSGLYMCEVSNGIG----EPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYV   89 (460)
Q Consensus        17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v   89 (460)
                      ++.|.|.+++.+|+|.|+|.+.+...    ...+..+.|.|..   +|.+...|. ..+.+|++++|.|.+.+.+  ..+
T Consensus        61 ~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~--~~~  137 (257)
T 1b6u_A           61 KANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSSY--DMY  137 (257)
T ss_dssp             EEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSCC--SEE
T ss_pred             eEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCCC--cEE
Confidence            35899999999999999999986432    2235667888864   355555554 4678899999999998754  379


Q ss_pred             EEeeCCeecCccccccEEE--eecCeEEEeecCCCCCeEEEEEEEcCCC---CcceeeEEEEEeeCCCceeeCCCccccc
Q psy535           90 TWTKDKRLLEPYQTKDIVV--MQNGSLLFTRVNQNHQGRYTCTPYNAHG---TQGSSGQMEVLVRKPPAFTIKPEAMYQR  164 (460)
Q Consensus        90 ~W~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~g---~~~~~~~~~v~v~~~p~~~~~~~~~~~~  164 (460)
                      .|+|+|..+..........  ..++.|.|.+++  |+|.|+|.+.+...   ....+..+.|.|..+|.+...+......
T Consensus       138 ~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~  215 (257)
T 1b6u_A          138 HLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSS  215 (257)
T ss_dssp             EEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC------------
T ss_pred             EEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCc
Confidence            9999998764321111000  124579999998  99999999997532   3345778899999888765222112234


Q ss_pred             CCCCeEEEEeeeeccCCCCCCeeEEEcCC
Q psy535          165 KVGESVDMHCEAQEAEGTQKPTITWQRRD  193 (460)
Q Consensus       165 ~~g~~~~l~C~~~~~~~~p~~~~~W~~~~  193 (460)
                      ..|..+.|.|.+    |.+.+.+.|...+
T Consensus       216 ~~g~~~~l~~~~----~~~~~~~~~~~~~  240 (257)
T 1b6u_A          216 ETGNPRHLHAAA----EQKLISEEDLNLD  240 (257)
T ss_dssp             -----------------------------
T ss_pred             cCCCeEEEEEEE----cchHHHHHHhhhh
Confidence            568899999985    7788889998644

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.74  E-value=1.1e-17  Score=142.75  Aligned_cols=132  Identities=20%  Similarity=0.263  Sum_probs=100.2

Q ss_pred             CcccceEEEeeC--CeEEEeecCCCCCeeEEEEEEeCCCCcc----eeeeEEEEecC---CeeEE-cceeeeecceeeEE
Q psy535            6 GSLETRVVIKKD--GTLVINPVGSDDSGLYMCEVSNGIGEPQ----AAQAYLNVEFP---AKVTF-TPTVQYLPFRLQGV   75 (460)
Q Consensus         6 ~~~~~r~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~---p~~~~-~~~~~~~~~g~~~~   75 (460)
                      ....+|+.+..+  ++|.|.+++.+|+|.|+|.+.+..+...    ...+.|.|..+   +.+.+ .+....+.+|+++.
T Consensus        76 ~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~  155 (250)
T 2fbo_J           76 GDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDIT  155 (250)
T ss_dssp             GGGTTTEECSCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEE
T ss_pred             CCcCceEEeccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEE
Confidence            345678888763  5999999999999999999999876431    34778888764   34443 34456677899999


Q ss_pred             EEEEEecCCCCCeEEEeeCCeecCccc----------------------cccEEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535           76 VQCHIKANPTFQYVTWTKDKRLLEPYQ----------------------TKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        76 l~C~~~~~~~~~~v~W~~~~~~~~~~~----------------------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      |.|.+.+.|.+ .|+|+|++..+....                      ..+......+.|.|.++..+|+|.|+|.|.|
T Consensus       156 L~C~~~g~p~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N  234 (250)
T 2fbo_J          156 MTCPCTDCANA-NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELAT  234 (250)
T ss_dssp             ECCCEESCTTC-EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEES
T ss_pred             EEEEecCCCCC-eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecC
Confidence            99999998877 899999988774311                      1222222346899999999999999999999


Q ss_pred             CCCCc
Q psy535          134 AHGTQ  138 (460)
Q Consensus       134 ~~g~~  138 (460)
                      ..|..
T Consensus       235 ~~g~~  239 (250)
T 2fbo_J          235 GQGEL  239 (250)
T ss_dssp             SSSGG
T ss_pred             Ccccc
Confidence            77644

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.74  E-value=2.9e-17  Score=138.92  Aligned_cols=172  Identities=12%  Similarity=0.181  Sum_probs=112.8

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eec----------CccccccEEEe---ecCeEEEeecCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLL----------EPYQTKDIVVM---QNGSLLFTRVNQ  121 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~----------~~~~~~~~~~~---~~~~l~i~~~~~  121 (460)
                      +.+...|....+.+|++++|.|.+.+.+.+ .+.|+|..  ...          ......++...   .+.+|.|.+++.
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  103 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRASQDVST-AVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP  103 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEecCCCCCc-eEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence            345566777889999999999999887654 79999832  110          00112344433   234699999999


Q ss_pred             CCCeEEEEEEEcCCCCcc-eeeEEEEEe-eCCCceeeCCCcccccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCCccCC
Q psy535          122 NHQGRYTCTPYNAHGTQG-SSGQMEVLV-RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDGVALP  198 (460)
Q Consensus       122 ~d~G~y~C~~~~~~g~~~-~~~~~~v~v-~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~~~~~  198 (460)
                      +|+|.|+|.+.+..+... ....+.|.. ..+|.+...+... .+..|+.++|.|.+.  .+.| .+.+.|++++. .+.
T Consensus       104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~v~l~C~~~--~~~p~~~~v~W~k~g~-~~~  179 (237)
T 3sob_L          104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSD-EQLKSGTASVVCLLN--NFYPREAKVQWKVDNA-LQS  179 (237)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCH-HHHHHTEEEEEEEEE--EEBSSCCEEEEEETTE-ECC
T ss_pred             hhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCCh-hhccCCceEEEEEEc--ccCCCceEEEEEECCC-CCC
Confidence            999999999987664321 122333332 4466665544433 344588899999994  3345 58999999543 333


Q ss_pred             ccc------------EEEecceEEEccccceeceEEEEEEeccccee
Q psy535          199 KNR------------VKIVGGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       199 ~~~------------~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      ...            .......|.|.....+|.|.|+|.|.|.....
T Consensus       180 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  226 (237)
T 3sob_L          180 GNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  226 (237)
T ss_dssp             SSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             CceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCC
Confidence            211            00112357788888888999999999986543

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.74  E-value=1.9e-16  Score=137.29  Aligned_cols=178  Identities=16%  Similarity=0.229  Sum_probs=116.7

Q ss_pred             EcceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC---------------ccccccEEEee-----cCeEEEe
Q psy535           61 FTPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE---------------PYQTKDIVVMQ-----NGSLLFT  117 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~---------------~~~~~~~~~~~-----~~~l~i~  117 (460)
                      ..|....+.+|++++|.|.+.+.+ +.+.+.|+|++  ..+.               .....++....     ..+|.|.
T Consensus        31 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~  110 (282)
T 1qok_A           31 QQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLS  110 (282)
T ss_dssp             EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEEC
Confidence            456677888999999999998875 23479999953  1110               01124554443     1479999


Q ss_pred             ecCCCCCeEEEEEEEcCCCC---cceeeEEEEEeeCC---------------CceeeCCCcccccCCCCeEEEEeeeecc
Q psy535          118 RVNQNHQGRYTCTPYNAHGT---QGSSGQMEVLVRKP---------------PAFTIKPEAMYQRKVGESVDMHCEAQEA  179 (460)
Q Consensus       118 ~~~~~d~G~y~C~~~~~~g~---~~~~~~~~v~v~~~---------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~  179 (460)
                      +++.+|+|.|+|.+.|..|.   ........|.|..+               +.+...|... .+..|+.++|.|.+   
T Consensus       111 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~v~~G~~v~L~C~~---  186 (282)
T 1qok_A          111 SLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIM-SASPGEKVTITCSA---  186 (282)
T ss_dssp             SCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEE-EECTTCCEEEEEEE---
T ss_pred             cCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEE-EEcCCCcEEEEEEe---
Confidence            99999999999999987651   11112234555443               3344445443 68899999999999   


Q ss_pred             CCCCCCeeEEEcC--CCccC------------CcccEEEe----cceEEEccccceeceEEEEEEecccce-eeeeeEEE
Q psy535          180 EGTQKPTITWQRR--DGVAL------------PKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVAT-IVQAAQLV  240 (460)
Q Consensus       180 ~~~p~~~~~W~~~--~~~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~-~~~~~~l~  240 (460)
                      .+.+ +.+.|++.  +..+.            ...++...    ..+|.|.++...|+|.|.|.+.|..+. ......|.
T Consensus       187 ~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~  265 (282)
T 1qok_A          187 SSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLE  265 (282)
T ss_dssp             SSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEE
T ss_pred             cCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEE
Confidence            6777 89999983  22220            12334322    236999999999999999999875432 22334555


Q ss_pred             Eec
Q psy535          241 VEG  243 (460)
Q Consensus       241 v~~  243 (460)
                      |..
T Consensus       266 V~~  268 (282)
T 1qok_A          266 LKR  268 (282)
T ss_dssp             EC-
T ss_pred             Eec
Confidence            543

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.73  E-value=8.7e-18  Score=137.46  Aligned_cols=128  Identities=14%  Similarity=0.219  Sum_probs=94.7

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCC-CcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIG-EPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK   93 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~   93 (460)
                      ++|.|.+++.+|+|.|+|.|.|..| ...+..+.|.|..   +|.+...+.. .+.+|++++|.|.+.+.+  ..+.|+|
T Consensus        58 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~~--~~~~w~k  134 (196)
T 3p2t_A           58 ARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSPM--DTFLLCK  134 (196)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEEE--EEEEEEE
T ss_pred             EEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCCC--CEEEEEe
Confidence            5899999999999999999999887 3346677888864   4555555543 678899999999998843  3799999


Q ss_pred             CCeecCcccccc--EEEeecCeEEEeecCCCCCeEEEEEEEcCCCC---cceeeEEEEEe
Q psy535           94 DKRLLEPYQTKD--IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT---QGSSGQMEVLV  148 (460)
Q Consensus        94 ~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~---~~~~~~~~v~v  148 (460)
                      +|..+.......  ......+.|.|.+++.+|+|.|+|.|.|..+.   ...+..+.|.|
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  194 (196)
T 3p2t_A          135 ERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV  194 (196)
T ss_dssp             TTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred             CCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence            998764322111  11234567999999999999999999997652   22444555555

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.73  E-value=1e-16  Score=135.79  Aligned_cols=166  Identities=15%  Similarity=0.271  Sum_probs=112.0

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecCC---CCCeEEEeeCC--eecC----------ccccccEEEeecC---eEEEeec
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKANP---TFQYVTWTKDK--RLLE----------PYQTKDIVVMQNG---SLLFTRV  119 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~~v~W~~~~--~~~~----------~~~~~~~~~~~~~---~l~i~~~  119 (460)
                      .+...|....+.+|++++|.|.+.+.+   ..+.+.|+|+.  ..+.          .....++.....+   +|.|.++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV   82 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence            345567778899999999999999887   24479999952  2110          0112344443322   6999999


Q ss_pred             CCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC------ceeeCCCcccccCCCCeEEEEeeeeccCCCC--CCeeEEEc
Q psy535          120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP------AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ--KPTITWQR  191 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p--~~~~~W~~  191 (460)
                      +.+|+|.|+|.+.|..+.. ......|.|..++      .+...+... .+..|+.++|.|.+   .+.|  .+.+.|++
T Consensus        83 ~~~D~G~Y~C~~~n~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~---~g~p~~~~~v~W~k  157 (240)
T 1moe_A           83 EADDVATYYCQQTNEDPYT-FGGGTKLEIKGGGSGGGGEVQLQQSGAE-LVEPGASVKLSCTA---SGFNIKDTYMHWVK  157 (240)
T ss_dssp             CGGGCEEEEEEECSSSSCC-BCCCEEEEECCCSCCCCCCCEEEECCCE-EECTTCCEEEEEEE---ESSCGGGSCEEEEE
T ss_pred             ChhhCEEEEEEEccCCcee-ecCCEEEEEecCCCCCCceEEEeCCCce-EEeCCCcEEEEEEE---cCccCCCCEEEEEE
Confidence            9999999999999876542 2223344454432      233334444 67899999999999   5665  46999998


Q ss_pred             CC-CccC------------------CcccEEEec------ceEEEccccceeceEEEEEEec
Q psy535          192 RD-GVAL------------------PKNRVKIVG------GNITIEGLRRVDFGYYECVVSN  228 (460)
Q Consensus       192 ~~-~~~~------------------~~~~~~~~~------~~l~i~~~~~~~~g~y~C~a~n  228 (460)
                      ++ +...                  ...++....      ..|.|.++..+|+|.|.|.|.+
T Consensus       158 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          158 QRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             ECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             ECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            52 1111                  112344331      3699999999999999999984

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.73  E-value=1.9e-17  Score=138.80  Aligned_cols=139  Identities=17%  Similarity=0.137  Sum_probs=91.9

Q ss_pred             ccceEEEeeC------CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEe
Q psy535            8 LETRVVIKKD------GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK   81 (460)
Q Consensus         8 ~~~r~~~~~~------~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~   81 (460)
                      +..|+....+      ++|.|.+++.+|+|.|+|.|.|..+..   ...+.+..++.+...+....+.+|+.+.|.|.+.
T Consensus        67 ~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~---~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~  143 (226)
T 4f80_A           67 YRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYE---KALVELKVAALGSDLHVDVKGYKDGGIHLECRST  143 (226)
T ss_dssp             TTTTEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTEEE---EEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEE
T ss_pred             ccceEEEecccccCCeEEEEEeeCchHHCeeEEEEEECCCcEE---EEEEEEeeccceecccceeeeccCCceeeEEEec
Confidence            3456665543      389999999999999999999977653   3445554444444445556677899999999998


Q ss_pred             cCCCCCeEEEeeCCeecCccccccEEEeecCe---EEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCC
Q psy535           82 ANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS---LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP  151 (460)
Q Consensus        82 ~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~  151 (460)
                      +..+++.|+|++++..+.+.....+....++.   +.+.+++.+|+|.|+|.|.|..|..+.+  +.|.|.+|
T Consensus       144 g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~--~~v~v~ep  214 (226)
T 4f80_A          144 GWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKT--ASISIADP  214 (226)
T ss_dssp             EEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEE--EEECCCTT
T ss_pred             cCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEE--EEEEECCC
Confidence            85334489999976554433333344444443   3445678899999999999999886554  44555443

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.73  E-value=3.2e-17  Score=136.43  Aligned_cols=166  Identities=13%  Similarity=0.243  Sum_probs=107.9

Q ss_pred             ceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC----------ccccccEEEeecC---eEEEeecCCCCCeE
Q psy535           63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE----------PYQTKDIVVMQNG---SLLFTRVNQNHQGR  126 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~----------~~~~~~~~~~~~~---~l~i~~~~~~d~G~  126 (460)
                      |....+.+|++++|.|.+.+.+ ..+.+.|+|++  ..+.          .....++.....+   +|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            6667888999999999954433 23479999953  2210          1112344443332   79999999999999


Q ss_pred             EEEEEEcCCCCcceeeEEEEEee---CCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcCCCccCCcc-
Q psy535          127 YTCTPYNAHGTQGSSGQMEVLVR---KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRRDGVALPKN-  200 (460)
Q Consensus       127 y~C~~~~~~g~~~~~~~~~v~v~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~~~~~~~~~-  200 (460)
                      |+|.+.|..+.........|.|.   .+|.+...+... ....|+.++|.|.+   .+ .|.+ .+.|++++ ..+... 
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~---~g~~P~~~~v~W~k~g-~~~~~~~  161 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSD-EQLKSGTASVVCLL---NNFYPREAKVQWKVDN-ALQSGNS  161 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEE---EEEBSSCCEEEEEETT-EECCSSE
T ss_pred             EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCCh-hhccCCcEEEEEEE---EeEcCCceEEEEEECC-eecCCCe
Confidence            99999987762112222334444   466666543332 22358899999998   44 5554 89999954 444332 


Q ss_pred             cEE-----------EecceEEEccccceeceEEEEEEeccccee
Q psy535          201 RVK-----------IVGGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       201 ~~~-----------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      ...           .....|.|..+...|.|.|+|.|.|.....
T Consensus       162 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  205 (216)
T 2xzc_L          162 QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  205 (216)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             eEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence            111           011258888888899999999999976543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.73  E-value=7e-17  Score=130.69  Aligned_cols=122  Identities=16%  Similarity=0.308  Sum_probs=95.4

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee---CC
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK---DK   95 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~---~~   95 (460)
                      .|.|.  +.+|+|.|+|.|.|.    ....+.|.|..+|.+...+....+.+|+++.|.|.+.+.|+++.+.|++   ++
T Consensus        52 ~l~i~--~~~d~G~Y~C~~~n~----~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~  125 (184)
T 3b5h_A           52 EFKVD--SDDQWGEYSCVFLPE----PMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSE  125 (184)
T ss_dssp             EEEEC--GGGCCEEEEEEEEST----TSCEEEEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSS
T ss_pred             EEEEe--chhhCeEEEEEEECC----cCcEEEEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCC
Confidence            45555  689999999999982    2467899999999988888778889999999999999988445899999   44


Q ss_pred             ee-cCccccccEEEeecC---eEEEeecC-CCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535           96 RL-LEPYQTKDIVVMQNG---SLLFTRVN-QNHQGRYTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus        96 ~~-~~~~~~~~~~~~~~~---~l~i~~~~-~~d~G~y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      .. +......++.+..++   .|.|.++. .+|+|.|+|.|.|..|.....  +.|.|
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~--~~l~V  181 (184)
T 3b5h_A          126 DKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAI--ITLRV  181 (184)
T ss_dssp             CEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEE--EEEEE
T ss_pred             CEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEE--EEEEE
Confidence            44 332233555555444   79999999 899999999999999886554  44444

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.73  E-value=8.2e-17  Score=134.32  Aligned_cols=171  Identities=13%  Similarity=0.186  Sum_probs=111.2

Q ss_pred             cceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--ee---cC--------------ccccccEEEeec---C--eEEE
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RL---LE--------------PYQTKDIVVMQN---G--SLLF  116 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~---~~--------------~~~~~~~~~~~~---~--~l~i  116 (460)
                      .|....+.+|++++|.|.+.+.+ ....+.|+|++  ..   +.              +....++....+   +  +|.|
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (220)
T 1pz5_B            6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM   85 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence            35556788999999999998765 23479999953  11   10              001245554432   2  7999


Q ss_pred             eecCCCCCeEEEEEEEcCCCCc-ceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCC-eeEE
Q psy535          117 TRVNQNHQGRYTCTPYNAHGTQ-GSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKP-TITW  189 (460)
Q Consensus       117 ~~~~~~d~G~y~C~~~~~~g~~-~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~-~~~W  189 (460)
                      .+++.+|+|.|+|.+.+..+.. .......|.|.    .+|.+...+... .+..|+.++|.|.+   .+. |.| .+.|
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~---~g~~P~p~~v~W  161 (220)
T 1pz5_B           86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGC-SDTSGSSVTLGCLV---KGYFPEPVTVKW  161 (220)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCS-CCSCSSSEEEEEEE---EEEBSSCCEEEE
T ss_pred             ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEccccc-ccCCCCcEEEEEEE---EEEeCCCeEEEE
Confidence            9999999999999999865321 11122334443    345554433332 45789999999999   455 888 9999


Q ss_pred             EcCCCc----cCCcc---cEEEecceEEEccccceeceEEEEEEecccceeeeee
Q psy535          190 QRRDGV----ALPKN---RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       190 ~~~~~~----~~~~~---~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      ++++..    ..+..   ......+.|.|......+ |.|+|.|.|..|.....+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  215 (220)
T 1pz5_B          162 NYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK  215 (220)
T ss_dssp             GGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             ecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence            986542    11110   111224568888887755 999999999998755443

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.73  E-value=1.5e-17  Score=138.55  Aligned_cols=122  Identities=23%  Similarity=0.410  Sum_probs=98.9

Q ss_pred             EEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec-CCeeEEcceeeeecceeeEEEEEEE-ecCCCCCeEEEeeCCeec
Q psy535           21 VINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-PAKVTFTPTVQYLPFRLQGVVQCHI-KANPTFQYVTWTKDKRLL   98 (460)
Q Consensus        21 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~v~W~~~~~~~   98 (460)
                      .|.+++.+|+|.|+|.+.|..|...+..+.|.|.. ++.+...+....+.+|+.+.|.|.+ .+.|.+ .+.|++++..+
T Consensus        72 ~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~-~v~W~~~g~~~  150 (217)
T 2vr9_A           72 TMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP-TLIWIKDGVPL  150 (217)
T ss_dssp             CCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCC-EEEEEETTEEE
T ss_pred             EeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCC-eEEEEECCcCC
Confidence            68899999999999999998876545567777764 5666667777888999999999999 777765 79999999988


Q ss_pred             Ccc------ccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535           99 EPY------QTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ  143 (460)
Q Consensus        99 ~~~------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~  143 (460)
                      ...      ...+.....++.|.|.++..+|+|.|+|.|.|..|....+..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~  201 (217)
T 2vr9_A          151 DDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYA  201 (217)
T ss_dssp             CCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCE
T ss_pred             CcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccE
Confidence            631      234555566778999999999999999999999988755433

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.73  E-value=3.5e-17  Score=130.91  Aligned_cols=116  Identities=16%  Similarity=0.256  Sum_probs=88.3

Q ss_pred             cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcc-eeeeEEEEecC---CeeEEcceeeeecceeeEEEEEEEec
Q psy535            7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQ-AAQAYLNVEFP---AKVTFTPTVQYLPFRLQGVVQCHIKA   82 (460)
Q Consensus         7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~   82 (460)
                      ..++|+++..+|+|.|.+++.+|+|.|+|.|.|..|... ...+.|.|..+   |.+..        .+..++|.|.+.+
T Consensus        55 ~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~  126 (182)
T 1hnf_A           55 KEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMN  126 (182)
T ss_dssp             ESCTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSS
T ss_pred             CCCCeEEECCCCCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccC
Confidence            457899999999999999999999999999999887642 35667888753   23222        2236899999998


Q ss_pred             CCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           83 NPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        83 ~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      .|.+ .++|+++|..+ . .       ....|.+.. ..+|+|.|+|.|.|..+.....
T Consensus       127 ~p~~-~~~W~~~g~~l-~-~-------~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~  174 (182)
T 1hnf_A          127 GTDP-ELNLYQDGKHL-K-L-------SQRVITHKW-TTSLSAKFKCTAGNKVSKESSV  174 (182)
T ss_dssp             CSSC-EEEEEESSCEE-E-E-------ESSCEEEEC-CSCEEEEEEEEEECSSCEEEEE
T ss_pred             CCCC-EEEEEECCEEC-C-C-------CCcEEEEec-ccCCCcEEEEEEEeCCCCcEEc
Confidence            8754 89999999887 1 1       223344433 5789999999999998876444

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.73  E-value=1.5e-17  Score=134.41  Aligned_cols=126  Identities=17%  Similarity=0.200  Sum_probs=93.5

Q ss_pred             CCeEEEeecCCCCCeeEEEEEEeCCCC-cceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEe
Q psy535           17 DGTLVINPVGSDDSGLYMCEVSNGIGE-PQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWT   92 (460)
Q Consensus        17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~   92 (460)
                      ++.|.|.+++.+|+|.|+|.+.|..|. ..+..+.|.|..   +|.+...| ...+.+|++++|.|.+.+.+  +.+.|+
T Consensus        51 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~--~~~~w~  127 (184)
T 2gi7_A           51 QAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF--DQFALY  127 (184)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC--CEEEEE
T ss_pred             ccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC--cEEEEE
Confidence            358999999999999999999997753 235567788853   45566666 45677899999999987654  379999


Q ss_pred             eCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCC---cceeeEEEEEe
Q psy535           93 KDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT---QGSSGQMEVLV  148 (460)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~---~~~~~~~~v~v  148 (460)
                      |+|..+....   ......+.|.|.+++.+|+|.|+|.|.|..+.   ...+..+.|.|
T Consensus       128 k~g~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  183 (184)
T 2gi7_A          128 KEGDPAPYKN---PERWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV  183 (184)
T ss_dssp             ECCCCTTSCC---CCEEEEESSSEEEETTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred             ECCCcCccee---cCCCceEEEEEccCCccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence            9998875411   12234557999999999999999999997543   22344555543

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.73  E-value=9e-18  Score=139.49  Aligned_cols=130  Identities=18%  Similarity=0.178  Sum_probs=98.2

Q ss_pred             ccceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCC--CcceeeeEEEEe----cCCeeEEcceeeeecceeeEEEEE
Q psy535            8 LETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIG--EPQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVVQC   78 (460)
Q Consensus         8 ~~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C   78 (460)
                      .++|+.+...   ++|.|.+++.+|+|.|+|.|.+..+  ......+.|.|.    .+|.+...+....+.+|+.++|.|
T Consensus        57 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C  136 (213)
T 3mj8_L           57 IPDHFSGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVC  136 (213)
T ss_dssp             SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEE
T ss_pred             ccCcEEEEecCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEE
Confidence            5578886543   3899999999999999999999887  233566888888    677777766655566899999999


Q ss_pred             EEecCCCC-CeEEEeeCCeecCcccccc--E----EEeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           79 HIKANPTF-QYVTWTKDKRLLEPYQTKD--I----VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        79 ~~~~~~~~-~~v~W~~~~~~~~~~~~~~--~----~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      .+.+.+++ ..++|+++|..+.......  .    .....+.|.|.++..+|+|.|+|.|.|..+.
T Consensus       137 ~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3mj8_L          137 MINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNT  202 (213)
T ss_dssp             EEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEE
T ss_pred             EeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCcc
Confidence            99986433 4899999999885321100  0    1111245899999999999999999997754

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.73  E-value=6.8e-18  Score=140.41  Aligned_cols=173  Identities=13%  Similarity=0.174  Sum_probs=110.1

Q ss_pred             CCeeEEcceeee--ecceeeEEEEEEEecCC---CCCeEEEeeCCeecCccccccE------EEeecCeEEEeecCCCCC
Q psy535           56 PAKVTFTPTVQY--LPFRLQGVVQCHIKANP---TFQYVTWTKDKRLLEPYQTKDI------VVMQNGSLLFTRVNQNHQ  124 (460)
Q Consensus        56 ~p~~~~~~~~~~--~~~g~~~~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~  124 (460)
                      +|.+.+.|....  +.+|++++|.|.+.+.+   +.+.|+|+|++..+........      .....+.|.|.+++.+|+
T Consensus         9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~   88 (218)
T 2rgs_A            9 GPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSG   88 (218)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTT
T ss_pred             CCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCC
Confidence            445544444433  67899999999998873   3358999999987642111000      111234699999999999


Q ss_pred             eEEEEEEEcCCCCcceeeEEEE--EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcCCCccCCcc
Q psy535          125 GRYTCTPYNAHGTQGSSGQMEV--LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRRDGVALPKN  200 (460)
Q Consensus       125 G~y~C~~~~~~g~~~~~~~~~v--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~~~~~~~~~  200 (460)
                      |.|+|.|.|..+.......+.+  .+..+|.+.+.+.... ...|+.++|.|.+   .| .|.+ .+.|++++.......
T Consensus        89 g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~---~g~~P~~~~v~W~k~g~~~~~~~  164 (218)
T 2rgs_A           89 KEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAE-QLSRKDVSLTCLV---VGFNPGDISVEWTSNGHTEENYK  164 (218)
T ss_dssp             CCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGG-GTTSSEEEEEEEE---EEEBSSCCEEEEEETTEEECCEE
T ss_pred             CeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChH-HhcCCceEEEEEE---EeeeCCCcEEEEEECCEeccCce
Confidence            9999999998665422333322  4556787766655432 3359999999999   55 5665 999999554332111


Q ss_pred             c--EE-Eecce------EEEccccceeceEEEEEEecccce
Q psy535          201 R--VK-IVGGN------ITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       201 ~--~~-~~~~~------l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      .  .. ..+++      |.+......|.|.|+|.|.|....
T Consensus       165 ~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          165 DTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             ECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             ecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            1  11 12233      333333444589999999997544

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.73  E-value=1.8e-17  Score=137.42  Aligned_cols=128  Identities=17%  Similarity=0.184  Sum_probs=94.6

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCC-cceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGE-PQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD   94 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~   94 (460)
                      .|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|..   +|.+...| ...+.+|++++|.|.+.+.+. +.+.|+|+
T Consensus        65 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~-~~~~W~k~  142 (218)
T 1uct_A           65 EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPF-DRFSLAKE  142 (218)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCC-SEEEEEET
T ss_pred             EEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCC-CEEEEEEC
Confidence            8999999999999999999997653 224567778764   45565555 456789999999997666554 47999999


Q ss_pred             CeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC---CcceeeEEEEEeeCC
Q psy535           95 KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG---TQGSSGQMEVLVRKP  151 (460)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g---~~~~~~~~~v~v~~~  151 (460)
                      |..+..   .......++.|.|.+++.+|+|.|+|.|.|...   ....+..+.|.|...
T Consensus       143 g~~~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~  199 (218)
T 1uct_A          143 GELSLP---QHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS  199 (218)
T ss_dssp             TCSSCC---SEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred             CCcccc---cccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence            987653   112223456799999999999999999997532   233566777777654

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.73  E-value=4e-17  Score=132.85  Aligned_cols=117  Identities=16%  Similarity=0.205  Sum_probs=88.4

Q ss_pred             cceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe---eEEcceeeeeccee-eEEEEEEEecCC
Q psy535            9 ETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK---VTFTPTVQYLPFRL-QGVVQCHIKANP   84 (460)
Q Consensus         9 ~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~---~~~~~~~~~~~~g~-~~~l~C~~~~~~   84 (460)
                      .+|+.+..+++|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|..++.   +...+  .....|. +++|.|.+.+.+
T Consensus        61 ~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~  137 (193)
T 2if7_A           61 GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAK-LSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDAD  137 (193)
T ss_dssp             HTTEEECTTCCEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCC
T ss_pred             cccEEECCCeEEEECCCCcccCceEEEEEEecCCCe-EEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCC
Confidence            368898888899999999999999999999987764 4578888876543   22222  1223454 799999999966


Q ss_pred             CCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCC-CCeEEEEEEEcCCCCc
Q psy535           85 TFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQN-HQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        85 ~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~~~~~~g~~  138 (460)
                      +.+.|+|+++|..+.          ..+.|.|.....+ |+|.|+|.|.|..|..
T Consensus       138 p~p~i~W~~~g~~l~----------~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~  182 (193)
T 2if7_A          138 DNVSFRWEALGNTLS----------SQPNLTVSWDPRISSEQDYTCIAENAVSNL  182 (193)
T ss_dssp             TTCEEEEEETTEEEE----------SSSEEEEEECTTTCSCCEEEEEEEETTEEE
T ss_pred             CceEEEEEeCCEEcC----------CCCeEEEEeccCcCCCCcEEEEEECCCCcc
Confidence            555899999988653          2345777655554 8999999999998875

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.73  E-value=1.8e-17  Score=137.29  Aligned_cols=131  Identities=21%  Similarity=0.259  Sum_probs=94.7

Q ss_pred             ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEe
Q psy535            8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIK   81 (460)
Q Consensus         8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~   81 (460)
                      ..+|+.+..++   +|.|.+++.+|+|.|+|.|.+..+........|.|..   +|.+...+.......|+.++|.|.+.
T Consensus        57 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~  136 (210)
T 1lk3_L           57 VPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMN  136 (210)
T ss_dssp             CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEE
T ss_pred             ccccEEEEecCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEE
Confidence            35788887554   8999999999999999999998765434455777765   56666544433344788999999998


Q ss_pred             cC-CCCCeEEEeeCCeecCcc-c-cccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           82 AN-PTFQYVTWTKDKRLLEPY-Q-TKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        82 ~~-~~~~~v~W~~~~~~~~~~-~-~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      +. |++..|.|+|+|..+... . ........+      +.|.|.++..+|+|.|+|.|.|.....
T Consensus       137 g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          137 NFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             EEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             eEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            74 443479999999987642 0 000001111      269999999999999999999876544

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.73  E-value=3.9e-18  Score=146.06  Aligned_cols=214  Identities=12%  Similarity=0.141  Sum_probs=85.5

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe-eEEcceeeeecceeeEEEEEEEecCCCCC--eEEEeeCC
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK-VTFTPTVQYLPFRLQGVVQCHIKANPTFQ--YVTWTKDK   95 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~--~v~W~~~~   95 (460)
                      .|.|.+++.+  |.|+|.+. ..+......+.|.|+.+|. +.+.+....+.+|+.++|.|.+.+..++.  .|+|+|++
T Consensus        51 ~~~l~~v~~~--~~y~C~~~-~~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~  127 (291)
T 1mq8_A           51 VYELSNVQED--SQPMCYSN-CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE  127 (291)
T ss_dssp             EEEEESCCSC--CCCEEEEE-CSSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSS
T ss_pred             EEEEEecccC--CeEEEEEE-cCCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECC
Confidence            4889998854  46999996 4445557778899987665 34444445578899999999998875543  58999999


Q ss_pred             eecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCC------cceeeEEEEEeeCCCceeeC-CCcccccCCCC
Q psy535           96 RLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT------QGSSGQMEVLVRKPPAFTIK-PEAMYQRKVGE  168 (460)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~------~~~~~~~~v~v~~~p~~~~~-~~~~~~~~~g~  168 (460)
                      ..+......  ......+|.+.....+|.+.|+|+|.+..+.      ...+....+.|.++|..... .... .+..|+
T Consensus       128 ~~l~~~~~~--~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~-~l~eG~  204 (291)
T 1mq8_A          128 KELKREPAV--GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPR-VLEVDT  204 (291)
T ss_dssp             SEEEEEECC--BTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC---------------------
T ss_pred             EEeecccCC--CCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCc-CccCCC
Confidence            887532210  0011234666666666777999999987552      12355567777777532111 1111 467899


Q ss_pred             eEEEEeeeeccCCCCCC---eeEEEcCCCccCCcccEEEecceEEEccc---cc--eeceEEEEEEecccceeeeeeEEE
Q psy535          169 SVDMHCEAQEAEGTQKP---TITWQRRDGVALPKNRVKIVGGNITIEGL---RR--VDFGYYECVVSNEVATIVQAAQLV  240 (460)
Q Consensus       169 ~~~l~C~~~~~~~~p~~---~~~W~~~~~~~~~~~~~~~~~~~l~i~~~---~~--~~~g~y~C~a~n~~g~~~~~~~l~  240 (460)
                      .++|.|.+   .|.+++   .+.|++++. .+... ....++.+.+...   ..  ++.+.|+|.+.+..........|.
T Consensus       205 ~v~l~C~~---~g~~P~~~~~v~w~~~g~-~l~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~  279 (291)
T 1mq8_A          205 QGTVVCSL---DGLFPVSEAQVHLALGDQ-RLNPT-VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVT  279 (291)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEEEEc---CCCCCCcccEEEEEECCE-ecCce-eeecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEE
Confidence            99999999   565443   689988444 44322 1222333433333   23  335677888887544455555566


Q ss_pred             Eec
Q psy535          241 VEG  243 (460)
Q Consensus       241 v~~  243 (460)
                      |..
T Consensus       280 v~~  282 (291)
T 1mq8_A          280 IYS  282 (291)
T ss_dssp             ---
T ss_pred             EEc
Confidence            643

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.73  E-value=7.8e-16  Score=133.79  Aligned_cols=174  Identities=17%  Similarity=0.236  Sum_probs=126.2

Q ss_pred             CCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecC-CCCeeeeeccCCCCceEEEccCccCccEEEEEEE
Q psy535          244 TQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG-NKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG  321 (460)
Q Consensus       244 ~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a  321 (460)
                      .+|.+|.++.. .....++.|+|.++.    ..+.+|.+.|+... ...|..... ......+.|.+|.+++.|.|++.|
T Consensus        13 ~~p~~P~~l~~~~~~~~sv~l~W~~~~----~~~~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a   87 (283)
T 1tdq_A           13 PVIDGPTQILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFRL-QPPLSQYSVQALRPGSRYEVSISA   87 (283)
T ss_dssp             CSSCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSSCCCEEEEE-CTTCSEEEECSCCTTCEEEEEEEE
T ss_pred             cCCCCCcEEEEEecCCCeEEEEEECCC----CceeEEEEEEEEecCCCCcEEEEe-CCCCCEEEecCCCCCCEEEEEEEE
Confidence            46778887775 456679999999865    22468999986543 234433333 336788999999999999999999


Q ss_pred             EcCCCCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccc
Q psy535          322 KNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY  400 (460)
Q Consensus       322 ~n~~G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~  400 (460)
                      .|..|.+.. ....+.+   +|.+|.++.+...+ +++.|+|++|.   +.+.+|.|+|+..+...              
T Consensus        88 ~~~~g~s~~-~~~~~~t---~p~~P~~l~~~~~~~~sv~l~W~~p~---~~i~~Y~v~~~~~~~~~--------------  146 (283)
T 1tdq_A           88 VRGTNESDA-SSTQFTT---EIDAPKNLRVGSRTATSLDLEWDNSE---AEAQEYKVVYSTLAGEQ--------------  146 (283)
T ss_dssp             EETTEECCC-EEEEEEC---CCCCCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEEETTCCC--------------
T ss_pred             ECCCCCCCC-eeEEEEC---CCCCCCceEEEecCCCeEEEEecCCC---CCccEEEEEEEeCCCCc--------------
Confidence            999887642 3333333   47889999998776 69999999985   57999999999764300              


Q ss_pred             cccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCC
Q psy535          401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS  452 (460)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s  452 (460)
                               .....+.........+.|.+|.|++.|.|+|.|.|..|.|+++
T Consensus       147 ---------~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~  189 (283)
T 1tdq_A          147 ---------YHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPA  189 (283)
T ss_dssp             ---------CEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             ---------ceEEECCCCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcce
Confidence                     0001111000126789999999999999999999999988654

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.72  E-value=1.3e-17  Score=135.35  Aligned_cols=126  Identities=17%  Similarity=0.132  Sum_probs=92.6

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCC-cceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGE-PQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK   93 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~   93 (460)
                      +.|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|..   +|.+...| ...+.+|++++|.|.+.+. . +.+.|+|
T Consensus        57 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~~-~-~~~~w~k  133 (188)
T 1oll_A           57 VKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-T-SMFLLLK  133 (188)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSSS-C-SEEEEEE
T ss_pred             eEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCCC-C-CEEEEEE
Confidence            58999999999999999999886542 225667888864   56666555 3567889999999998764 3 3799999


Q ss_pred             CCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC-CCcceeeEEEEEee
Q psy535           94 DKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH-GTQGSSGQMEVLVR  149 (460)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-g~~~~~~~~~v~v~  149 (460)
                      +|..+..   .......++.|.|.+++.+|+|.|+|.|.|.. .....+..+.|.|.
T Consensus       134 ~g~~~~~---~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          134 EGRSSHV---QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             ESSSCEE---EEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             CCccccc---cccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            9977642   11122334579999999999999999998764 22334556666653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.72  E-value=4.9e-18  Score=152.12  Aligned_cols=131  Identities=19%  Similarity=0.243  Sum_probs=101.1

Q ss_pred             EeeCCeEEEeecCCCCCe-eEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEe
Q psy535           14 IKKDGTLVINPVGSDDSG-LYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWT   92 (460)
Q Consensus        14 ~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~   92 (460)
                      ...+++|.|.+++.+|+| .|+|.|.|..|.. +..+.|.|..+|.+    ......+|++++|.|.+.|.|.+ .|+|+
T Consensus       208 ~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~-~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p-~i~W~  281 (347)
T 2ifg_A          208 GLPSLGLTLANVTSDLNRKNVTCWAENDVGRA-EVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAP-SLRWL  281 (347)
T ss_dssp             CSSEEEEEEESCCSTTTTCCEEECCEETTEEC-CEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCC-EEEEE
T ss_pred             ecccceEEEeeCChHHCCCeEEEEEEcCCCCE-EEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCC-cEEEE
Confidence            334468999999999999 9999999998875 66778888777775    12234568899999999999876 89999


Q ss_pred             eCCeecCccccccEEEe--------ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535           93 KDKRLLEPYQTKDIVVM--------QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP  152 (460)
Q Consensus        93 ~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p  152 (460)
                      ++|..+...........        .+++|.|.++..+|+|.|+|.|.|..|..  +..+.|.|..+|
T Consensus       282 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~--~~~~~l~V~~~P  347 (347)
T 2ifg_A          282 FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA--SASIMAAFMDNP  347 (347)
T ss_dssp             ETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEE--EEEEEECSCCCC
T ss_pred             eCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCce--eeEEEEEecCCC
Confidence            99998874322222211        24569999999999999999999999875  455666666554

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.72  E-value=5.8e-17  Score=128.74  Aligned_cols=153  Identities=12%  Similarity=0.135  Sum_probs=100.9

Q ss_pred             eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcc----------ccccEEEe-ecCeEEEeecCCCCCeEEEEEEEc
Q psy535           65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPY----------QTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~----------~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      ...+.+|++++|.|.+.+ |. +.|.|++++..+...          ...+.... .+++|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~-~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n   81 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PL-KEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CC-SCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             EEEEEcCCCEEEcCCCCC-Cc-ceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence            455778999999999843 44 479999988654211          12244432 567899999999999999999988


Q ss_pred             CCCCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEcc
Q psy535          134 AHGTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEG  213 (460)
Q Consensus       134 ~~g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~  213 (460)
                      ..|    ...+.|.|..++..   |..  .... ....|.|.+   .+.|.|.+.|+++ +..+..    .....+.+. 
T Consensus        82 ~~~----~~~~~L~V~~~~~~---p~i--~~~~-~~~~L~C~~---~~~p~p~i~W~~~-~~~l~~----~~~~~l~~~-  142 (171)
T 1ccz_A           82 ITD----TMKFFLYVLEMVSK---PMI--YWEC-SNATLTCEV---LEGTDVELKLYQG-KEHLRS----LRQKTMSYQ-  142 (171)
T ss_dssp             CCS----CEEEEEEEECCCCC---CEE--EEET-TTTEEEEEC---SSCSSCEEEEEET-TEEEEE----ESSSEEEEE-
T ss_pred             CCC----cEEEEEEEECcCCC---CEE--EEec-CCcEEEEEe---CCCCCcEEEEEEC-CEECcC----CcceEEEEe-
Confidence            776    34555666555321   110  0101 113799998   6778899999984 433321    111233333 


Q ss_pred             ccceeceEEEEEEecccceeeeeeEE
Q psy535          214 LRRVDFGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       214 ~~~~~~g~y~C~a~n~~g~~~~~~~l  239 (460)
                       ...|.|.|+|.|.|..+.......+
T Consensus       143 -~~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          143 -WTNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             -CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             -ccCCCceEEEEEEcccCcccceeEE
Confidence             3667889999999999887665443

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.72  E-value=9.5e-17  Score=136.09  Aligned_cols=136  Identities=22%  Similarity=0.297  Sum_probs=98.8

Q ss_pred             CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecC----Cee-EEcceeeeecceeeEEEEEEEecCCCCCeEEE
Q psy535           17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP----AKV-TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTW   91 (460)
Q Consensus        17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~----p~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W   91 (460)
                      +++|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|...    |.+ ...+....+.+|+.+.|.|.+.+.|.+ .+.|
T Consensus        71 ~~~L~i~~v~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p-~v~W  148 (241)
T 3grw_A           71 QWSLVMESVVPSDRGNYTCVVENKFGSI-RQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP-HIQW  148 (241)
T ss_dssp             GTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCC-EEEE
T ss_pred             ceEEEEEeCCcccCEEEEEEEeecCCce-EEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCC-EEEE
Confidence            3589999999999999999999987764 66778888652    222 224566778889999999999998876 8999


Q ss_pred             ee----CCeecCccccccEEEe---------ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCceee
Q psy535           92 TK----DKRLLEPYQTKDIVVM---------QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTI  156 (460)
Q Consensus        92 ~~----~~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~  156 (460)
                      ++    ++..+...........         ..+.|.|.++..+|+|.|+|.|.|..|..  +..+.|.|..+|....
T Consensus       149 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~--~~~~~l~V~~~p~~~~  224 (241)
T 3grw_A          149 LKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA--EKAFWLSVHGPRAAEE  224 (241)
T ss_dssp             EEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEE--EEEEEEEC--------
T ss_pred             EEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceE--EEEEEEEecCCCCCCc
Confidence            99    8877754333222211         23469999999999999999999988876  4556677777775443

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.72  E-value=1.6e-17  Score=137.96  Aligned_cols=130  Identities=22%  Similarity=0.284  Sum_probs=95.6

Q ss_pred             cceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEec
Q psy535            9 ETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKA   82 (460)
Q Consensus         9 ~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~   82 (460)
                      .+|+.+..++   +|.|.+++.+|+|.|+|.|.+..+......+.|.|..   +|.+...+......+|+.++|.|.+.+
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g  138 (213)
T 3d9a_L           59 PSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNN  138 (213)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEE
T ss_pred             cccEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEee
Confidence            4788887654   8999999999999999999998765434456777764   666666444444457889999999988


Q ss_pred             -CCCCCeEEEeeCCeecCccccc--cE------EEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           83 -NPTFQYVTWTKDKRLLEPYQTK--DI------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        83 -~~~~~~v~W~~~~~~~~~~~~~--~~------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                       .|++..++|+++|..+......  ..      .....+.|.|.++..+|+|.|+|.|.|.....
T Consensus       139 ~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          139 FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             EBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             ecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence             4443479999999987643000  00      00112379999999999999999999976554

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.72  E-value=8e-17  Score=134.58  Aligned_cols=169  Identities=14%  Similarity=0.236  Sum_probs=110.0

Q ss_pred             ceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC-----------------ccccccEEEeec-----CeEEEe
Q psy535           63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE-----------------PYQTKDIVVMQN-----GSLLFT  117 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~-----~~l~i~  117 (460)
                      |....+.+|++++|.|.+.+.+ ....+.|+|+.  ....                 +....++....+     .+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (222)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence            4455688899999999998764 23479999842  2110                 001245555432     379999


Q ss_pred             ecCCCCCeEEEEEEEcCCC-----CcceeeEEEEEee--CCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeE
Q psy535          118 RVNQNHQGRYTCTPYNAHG-----TQGSSGQMEVLVR--KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TIT  188 (460)
Q Consensus       118 ~~~~~d~G~y~C~~~~~~g-----~~~~~~~~~v~v~--~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~  188 (460)
                      +++.+|+|.|+|.+.+..+     .......+.|.+.  .+|.+...+... .+..|+.++|.|.+   .| .|.| .+.
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~---~g~~P~p~~v~  162 (222)
T 1q9r_B           87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGS-AAQTNSMVTLGCLV---KGYFPEPVTVT  162 (222)
T ss_dssp             SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCS-CCCCSSEEEEEEEE---EEEBSSCCEEE
T ss_pred             cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccc-cccCCCcEEEEEEE---ccEECCCCEEE
Confidence            9999999999999998654     1112233444321  245554433222 35679999999999   45 4888 999


Q ss_pred             EEcCCCccCCcccE--------EEecceEEEccccceeceEEEEEEecccceeeeee
Q psy535          189 WQRRDGVALPKNRV--------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       189 W~~~~~~~~~~~~~--------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      |++++ ..+.....        ....+.|.|..+...| |.|+|.|.|..|......
T Consensus       163 W~~~g-~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~  217 (222)
T 1q9r_B          163 WNSGS-LSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  217 (222)
T ss_dssp             EGGGT-BCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             EecCC-eEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEE
Confidence            99854 33321111        1112357888888888 999999999988755443

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.72  E-value=4.7e-16  Score=132.95  Aligned_cols=171  Identities=13%  Similarity=0.201  Sum_probs=113.7

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eec---------------CccccccEEEeecC-----
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLL---------------EPYQTKDIVVMQNG-----  112 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~---------------~~~~~~~~~~~~~~-----  112 (460)
                      ++.+...+....+.+|++++|.|.+.+.. +.+.+.|+|..  ..+               ......++.+..+.     
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA   85 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence            44566677888899999999999998842 23479999732  111               01112355544322     


Q ss_pred             eEEEeecCCCCCeEEEEEEEcCC----------CCcceeeEEEEEeeC---------------CCceeeCCCcccccCCC
Q psy535          113 SLLFTRVNQNHQGRYTCTPYNAH----------GTQGSSGQMEVLVRK---------------PPAFTIKPEAMYQRKVG  167 (460)
Q Consensus       113 ~l~i~~~~~~d~G~y~C~~~~~~----------g~~~~~~~~~v~v~~---------------~p~~~~~~~~~~~~~~g  167 (460)
                      +|.|.+++.+|+|.|+|.+.+..          ..........|.|..               ++.+...+... .+..|
T Consensus        86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G  164 (256)
T 3juy_B           86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTL-SLSPG  164 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEE-EECTT
T ss_pred             EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeE-EEeCC
Confidence            59999999999999999998861          111122234455554               34455555554 68899


Q ss_pred             CeEEEEeeeeccCCCCC-CeeEEEcCC--CccC------------CcccEEEe----cceEEEccccceeceEEEEEEec
Q psy535          168 ESVDMHCEAQEAEGTQK-PTITWQRRD--GVAL------------PKNRVKIV----GGNITIEGLRRVDFGYYECVVSN  228 (460)
Q Consensus       168 ~~~~l~C~~~~~~~~p~-~~~~W~~~~--~~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n  228 (460)
                      +.++|.|.+   .+.+. +.+.|++..  ..+.            ...++...    ..+|.|.++..+|+|.|.|.+.|
T Consensus       165 ~~v~L~C~~---~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  241 (256)
T 3juy_B          165 ERATFSCRS---SHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYG  241 (256)
T ss_dssp             SCEEEEEEE---SSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECC
T ss_pred             CCEEEEEEE---CCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEee
Confidence            999999999   56665 899998732  1111            11233322    22599999999999999999988


Q ss_pred             cc
Q psy535          229 EV  230 (460)
Q Consensus       229 ~~  230 (460)
                      ..
T Consensus       242 ~~  243 (256)
T 3juy_B          242 AS  243 (256)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.72  E-value=1.1e-17  Score=137.94  Aligned_cols=165  Identities=14%  Similarity=0.172  Sum_probs=107.8

Q ss_pred             cceeee-ecceeeEEEEEEEecCC---CCCeEEEeeCCeecCcccc------ccEEEeecCeEEEeecCCCCCeEEEEEE
Q psy535           62 TPTVQY-LPFRLQGVVQCHIKANP---TFQYVTWTKDKRLLEPYQT------KDIVVMQNGSLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        62 ~~~~~~-~~~g~~~~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~y~C~~  131 (460)
                      .|.... +.+|++++|.|.+.+.+   ....|.|+|++..+.....      ..-.....+.|.|.+++.+|+|.|+|.|
T Consensus         8 ~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   87 (207)
T 2vol_A            8 PPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRV   87 (207)
T ss_dssp             CCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEE
T ss_pred             CcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEE
Confidence            344333 77899999999999874   3348999999977642110      0001112346999999999999999999


Q ss_pred             EcCCCCcceeeEEEE--EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCC-CeeEEEcCCCccCCccc---EE-
Q psy535          132 YNAHGTQGSSGQMEV--LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQK-PTITWQRRDGVALPKNR---VK-  203 (460)
Q Consensus       132 ~~~~g~~~~~~~~~v--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~-~~~~W~~~~~~~~~~~~---~~-  203 (460)
                      .|..+.......+.+  .+..+|.+.+.+... ....|+.++|.|.+   .| .|. +.+.|++++. .+....   .. 
T Consensus        88 ~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~-~~~~g~~~~L~C~~---~g~~P~~~~v~W~k~g~-~l~~~~~~~~~~  162 (207)
T 2vol_A           88 NSAAFPAPIEKTISKTKGRPKAPQVYTLPPPK-EQMAKDKVSLTCMI---TDFFPEDITVEWESNGQ-PAENYKNTQPIM  162 (207)
T ss_dssp             ECTTCSSCEEEEECCCCCCCBCCEEEEECCCT-GGGSSSEEEEEEEE---EEEBSSCCEEEEEETTE-ECSCEEECCCEE
T ss_pred             EccCCCCceEEEeccCCCCCcCCeEEEeCCCH-HHhcCCceEEEEEE---eeEECCCCEEEEEECCE-eccCcccCCceE
Confidence            998776433344433  456688877665544 23358999999999   45 454 4899999544 443211   11 


Q ss_pred             Eecce------EEEccccceeceEEEEEEecccc
Q psy535          204 IVGGN------ITIEGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       204 ~~~~~------l~i~~~~~~~~g~y~C~a~n~~g  231 (460)
                      ..+++      |.+......+.|.|+|.|.|...
T Consensus       163 ~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          163 DTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             CTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             CCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence            11222      34444444568999999999754

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.72  E-value=1.6e-16  Score=135.14  Aligned_cols=166  Identities=19%  Similarity=0.265  Sum_probs=109.7

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCC----CCeEEEeeCC--eecC----------ccccccEEEeec---CeEEEeec
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPT----FQYVTWTKDK--RLLE----------PYQTKDIVVMQN---GSLLFTRV  119 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~~v~W~~~~--~~~~----------~~~~~~~~~~~~---~~l~i~~~  119 (460)
                      +...|....+.+|++++|.|.+.+.+.    .+.+.|+|+.  ..+.          .....++.....   .+|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   83 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   83 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCC
Confidence            455677788999999999999988762    3479999842  2110          001234443322   26999999


Q ss_pred             CCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC-------------ceeeCCCcccccCCCCeEEEEeeeeccCCCC--C
Q psy535          120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP-------------AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ--K  184 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p-------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p--~  184 (460)
                      +.+|+|.|+|.+.|..+.. ......|.|..++             .....+... .+..|+.++|.|.+   .+.+  .
T Consensus        84 ~~~D~G~Y~C~~~n~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~---~~~~~~~  158 (247)
T 1svz_A           84 EAEDLGIYYCFQGSHFPPT-FGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPE-LKKPGETVKISCKA---TNYAFTD  158 (247)
T ss_dssp             CGGGCEEEEEEECSSSSCE-ECCCEEEEEC---------------CCEEEECCCE-EECTTCCEEEEEEE---ESSCGGG
T ss_pred             CHHHCEEEEEEEccCCccE-ECCCEEEEEECCccccccccccccCceEEeCCCce-eecCCCcEEEEEEE---cCcccCC
Confidence            9999999999998875432 1222345554432             222233333 58899999999998   4553  5


Q ss_pred             CeeEEEcCCC-ccC------------------CcccEEEe------cceEEEccccceeceEEEEEEecc
Q psy535          185 PTITWQRRDG-VAL------------------PKNRVKIV------GGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       185 ~~~~W~~~~~-~~~------------------~~~~~~~~------~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      +.+.|++++. ...                  ...++...      ...|.|.++..+|+|.|.|.+.|.
T Consensus       159 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          159 YSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             SCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             cEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            6999998531 110                  02344432      137999999999999999999985

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.72  E-value=1.1e-16  Score=139.78  Aligned_cols=181  Identities=12%  Similarity=0.116  Sum_probs=124.0

Q ss_pred             CCCCCCceeeee------ecceEEEEeecC--CCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEE
Q psy535          245 QPHAPYNITGVA------TEFSVTLEWLPG--YSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE  316 (460)
Q Consensus       245 ~p~~p~~~~~~~------~~~~~~l~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~  316 (460)
                      +|..|.++....      ...++.|.|.++  ...+.. +.+|.+.++..+.... ....     ....+.+|.+++.|.
T Consensus         3 ~Ps~p~~~~~~~~~~~~~g~~sv~l~W~p~~~~~~~g~-i~~Y~V~~~~~~~~~~-~~~~-----~~~~~~~l~p~t~Y~   75 (290)
T 3l5i_A            3 RPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGK-ILDYEVTLTRWKSHLQ-NYTV-----NATKLTVNLTNDRYL   75 (290)
T ss_dssp             CCSSCCCEEEEEEECSSTTCEEEEEEECCCCHHHHCSC-EEEEEEEEEETTSCCE-EEEE-----SSSEEEEEECSSCEE
T ss_pred             CCCCCCceeEEecccccCCCceEEEEEccCCchhcCCc-eEeEEEEEEeCCcCce-eEec-----CCcEEEEEcCCceEE
Confidence            455555554332      247999999973  233444 4799999987654332 1111     223567789999999


Q ss_pred             EEEEEEcCCCCCCCCCcEEEEcc-CCCCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCC
Q psy535          317 FQVVGKNELGDGMLSNIVVVKTK-GPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRP  395 (460)
Q Consensus       317 ~~~~a~n~~G~~~~s~~~~~~~~-~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~  395 (460)
                      |+|.|.|..|.+..+. +.+... ..+|.+|.++.+....+++.|+|++|..   .+.+|.|+|+..+.-.         
T Consensus        76 ~~V~A~n~~G~s~~s~-~~~~~~~~~~~~p~~~~~~~~~~~si~l~W~~p~~---~i~~Y~v~~~~~~~~~---------  142 (290)
T 3l5i_A           76 ATLTVRNLVGKSDAAV-LTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRE---SVKKYILEWCVLSDKA---------  142 (290)
T ss_dssp             EEEEEEESSCBCCCEE-EEECCTTCCCCCCCEEEEEEEETTEEEEEEECCSS---CCCEEEEEEEEECSSS---------
T ss_pred             EEEEEEcCCCCCCCce-EEeecccccCCCccceeEEEeCCCeEEEEEeCCCC---CCCcEEEEEEECCCCC---------
Confidence            9999999999886552 222222 1346778888888777899999999854   7999999999765310         


Q ss_pred             CcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          396 EENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                                 .....|..+.  ......+.+.+|.|++.|.|+|.|.|..|.|++ ..+.+.|
T Consensus       143 -----------~~~~~~~~~~--~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~-~~~~~~t  192 (290)
T 3l5i_A          143 -----------PCITDWQQED--GTVHRTYLRGNLAESKCYLITVTPVYADGPGSP-ESIKAYL  192 (290)
T ss_dssp             -----------CCCCEEEEEE--TTCSEEECCSCCCTTCEEEEEEEEEETTEECCC-EEEEEES
T ss_pred             -----------CCCcCeEEcc--CCCcceEEecCcCCccEEEEEEEEEeCCccccc-EEEEeEc
Confidence                       0112344442  245667888999999999999999999999874 4444444

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.72  E-value=8e-17  Score=137.38  Aligned_cols=171  Identities=14%  Similarity=0.225  Sum_probs=112.6

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCC----CCeEEEeeCCe--ec----------CccccccEEEeecC---eEEEe
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPT----FQYVTWTKDKR--LL----------EPYQTKDIVVMQNG---SLLFT  117 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~~v~W~~~~~--~~----------~~~~~~~~~~~~~~---~l~i~  117 (460)
                      +.+...|....+.+|++++|.|.+.+.++    .+.|.|+|++.  .+          ......++.....+   +|.|.
T Consensus        35 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  114 (252)
T 3bkj_L           35 VLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRIS  114 (252)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             cEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEEC
Confidence            34556677788999999999999988761    34799999541  11          01112344444333   79999


Q ss_pred             ecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC---CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCC
Q psy535          118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK---PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRD  193 (460)
Q Consensus       118 ~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~  193 (460)
                      +++.+|+|.|+|.+.+..+.. ......|.|..   +|.+.+.+... .+..|+.++|.|.+.  ...|.+ .+.|++++
T Consensus       115 ~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~--g~~p~~~~v~W~k~g  190 (252)
T 3bkj_L          115 RVEAEDLGVYYCFQASLVPLT-FGAGTKLELKRADAAPTVSIFPPSS-EQLTSGGASVVCFLN--NFYPKDINVKWKIDG  190 (252)
T ss_dssp             SCCGGGCEEEEEEECSBSSCE-ECCCEEEEECCCCBCCEEEEECCCH-HHHHHTEEEEEEEEE--EEBSSCCEEEEEETT
T ss_pred             CCCcccCEEEEEEEEcCCccE-ECCCEEEEEeCCCcCcEEEEeCCCh-hhcCCCcEEEEEEEe--eEeCCCcEEEEEECC
Confidence            999999999999998865432 11223344442   56666544333 234688999999983  224544 79999954


Q ss_pred             CccCCcc-cEE-----------EecceEEEccccceeceEEEEEEecccce
Q psy535          194 GVALPKN-RVK-----------IVGGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       194 ~~~~~~~-~~~-----------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      . .+... ...           .....|.|..+...|.|.|+|.|.|....
T Consensus       191 ~-~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          191 S-ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             E-EECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             e-ecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            4 33222 110           01234889999999999999999997554

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.72  E-value=5.9e-18  Score=140.45  Aligned_cols=165  Identities=12%  Similarity=0.211  Sum_probs=109.1

Q ss_pred             ceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC----------ccccccEEEeec---CeEEEeecCCCCCeEE
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE----------PYQTKDIVVMQN---GSLLFTRVNQNHQGRY  127 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~----------~~~~~~~~~~~~---~~l~i~~~~~~d~G~y  127 (460)
                      |....+.+|++++|.|.+.+.+.+ .+.|+|+  +..+.          .....++.....   ..|.|.+++.+|+|.|
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   84 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKN-FAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY   84 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGS-CCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCC-eEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEE
Confidence            667788899999999998877655 6999984  33221          001234443322   2799999999999999


Q ss_pred             EEEEEcCCC-CcceeeEEEEEe----eCCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CC-CeeEEEcCCCccCCcc
Q psy535          128 TCTPYNAHG-TQGSSGQMEVLV----RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QK-PTITWQRRDGVALPKN  200 (460)
Q Consensus       128 ~C~~~~~~g-~~~~~~~~~v~v----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~-~~~~W~~~~~~~~~~~  200 (460)
                      +|.+.|..+ .........|.|    ..+|.+...+... .+..|+.++|.|.+   .+. |. +.+.|++++..+....
T Consensus        85 ~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~---~g~~p~~~~v~W~k~g~~~~~~~  160 (212)
T 1nfd_E           85 YCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSP-EELRTNKATLVCLV---NDFYPGSATVTWKANGATINDGV  160 (212)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCH-HHHHTTEECCCEEE---EEEBSSCCEEEEEETTEEECSSC
T ss_pred             EEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCch-HhccCCceEEEEEE---EeeECCccEEEEEECCeEcCCCe
Confidence            999996322 111122233444    2466666544433 34578999999998   454 54 7999999543322111


Q ss_pred             cE---------EEecceEEEccccceeceEEEEEEecccce
Q psy535          201 RV---------KIVGGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       201 ~~---------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      ..         ....+.|.|.++...|.|.|+|.|.|..+.
T Consensus       161 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          161 KTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             BCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             ecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            10         111245889999999999999999998765

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.72  E-value=9e-18  Score=120.02  Aligned_cols=93  Identities=23%  Similarity=0.385  Sum_probs=77.5

Q ss_pred             CCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          342 KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       342 ~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      +|.+|.++.+....+++.|+|++|.+++++|++|.|+|+..+. |.....                          ....
T Consensus         7 p~~pP~~l~v~~~~~sv~L~W~pP~~~~~~I~gY~vey~~~~~~W~~~~~--------------------------~~~~   60 (108)
T 1v5j_A            7 GLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDP--------------------------AVAG   60 (108)
T ss_dssp             CCCCCEEEEEEECSSSEEEEEECCSCCSSCCCBEEEEEEETTCCCEEEEE--------------------------EECS
T ss_pred             CCCCCcceEEEEeCCEEEEEECCCCCCCCCCcEEEEEEEeCCCCcEEeee--------------------------ecCC
Confidence            4789999999776679999999999888899999999997322 432221                          1235


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ..+.|.+.+|.+++.|+|||.|+|..|.|++|+.+.++|.
T Consensus        61 ~~t~~~v~~L~pg~~Y~FRV~A~n~~G~s~pS~~~~v~T~  100 (108)
T 1v5j_A           61 TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTS  100 (108)
T ss_dssp             SCCEEECCCCCTTSCEECCBEEEETTEEEEECSCCCCCCS
T ss_pred             CcCEEEeCCCCCCCEEEEEEEEEcCCCCcCCCCCEEEEeC
Confidence            6789999999999999999999999999999999998884

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.72  E-value=5.8e-17  Score=131.11  Aligned_cols=125  Identities=18%  Similarity=0.212  Sum_probs=94.9

Q ss_pred             ccceEEEee----CC--eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEe
Q psy535            8 LETRVVIKK----DG--TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK   81 (460)
Q Consensus         8 ~~~r~~~~~----~~--~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~   81 (460)
                      ..+|+.+..    +|  +|.|.+++.+|+|.|+|.+.+..+     .+.|.|..   +.. +....+.+|++++|.|.+.
T Consensus        52 ~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~-----~~~l~V~~---~~~-~~~~~v~~g~~~~l~C~~~  122 (184)
T 2ny1_B           52 LNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKE-----EVQLLVFG---LTA-NSDTHLLQGQSLTLTLESP  122 (184)
T ss_dssp             TGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEETTEEE-----EEEEEEEE---EEE-SSCSEEETTCCEEEEEECC
T ss_pred             hCCccccccccccCCeEEEEEecCCHHHCEEEEEEEEcCCC-----cEEEEEEE---ecC-CCCceeecCCCEEEEEEcC
Confidence            356677653    23  699999999999999999998643     45666653   222 3345678899999999998


Q ss_pred             cCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCc
Q psy535           82 ANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA  153 (460)
Q Consensus        82 ~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~  153 (460)
                      +.|.+ .+.|++++..+         ....+.|.|.++..+|+|.|+|.|.|..+..  +..+.|.|...|.
T Consensus       123 ~~p~~-~v~W~~~~~~~---------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~--~~~~~l~V~~~p~  182 (184)
T 2ny1_B          123 PGSSP-SVQCRSPRGKN---------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV--EFKIDIVVLAFQK  182 (184)
T ss_dssp             TTCCC-EEEEECTTSCE---------EEESSEEEESSCCGGGCEEEEEEEEETTEEE--EEEEEEEEECCCC
T ss_pred             CCCCC-EEEEEeCCCcc---------ccCceEEEEecCCcCCCeEEEEEEEECCceE--EEEEEEEEEecCC
Confidence            88755 89999988665         2356789999999999999999999877664  4455666665553

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.71  E-value=3.4e-17  Score=136.92  Aligned_cols=143  Identities=22%  Similarity=0.269  Sum_probs=95.8

Q ss_pred             cccceEEEee------CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecC---CeeEEcceeeeecceeeEEEE
Q psy535            7 SLETRVVIKK------DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP---AKVTFTPTVQYLPFRLQGVVQ   77 (460)
Q Consensus         7 ~~~~r~~~~~------~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~   77 (460)
                      ...+|+.+..      +++|.|.+++.+|+|.|+|.+.+....  +..+.|.|..+   |.+...+. ..+.+|+.++|.
T Consensus        55 ~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~~~l~  131 (222)
T 4i0k_A           55 AYSNRTALFPDLLVQGNASLRLQRVRVTDEGSYTCFVSIQDFD--SAAVSLQVAAPYSKPSMTLEPN-KDLRPGNMVTIT  131 (222)
T ss_dssp             SSCSCEECCTTTGGGTBCCEEECSCCGGGCSCEEEEEEECCCC--CCCCCCCCCBCCCCCEEECCC------CCSEEEEE
T ss_pred             ceeCcEEEecccccCCeEEEEECCcccccCEEEEEEEEeCCCc--eEEEEEEEEcCCCCCcEEeCCC-ceecCCceEEEE
Confidence            3467888765      568999999999999999999986322  55667777654   45554443 456789999999


Q ss_pred             EEE-ecCCCCCeEEEee-CCeecCccccccEEEeecCe---EEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535           78 CHI-KANPTFQYVTWTK-DKRLLEPYQTKDIVVMQNGS---LLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP  152 (460)
Q Consensus        78 C~~-~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~---l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p  152 (460)
                      |.+ .+.|.+ .+.|++ ++..+............++.   |.|.++..+|+|.|+|.|.|..|...  ..+.|.|..+|
T Consensus       132 C~~~~g~P~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~p  208 (222)
T 4i0k_A          132 CSSYQGYPEA-EVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQD--AHGSVTITGQP  208 (222)
T ss_dssp             EEEEEEBSCC-EEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEE--EEEEEECCC--
T ss_pred             EecccccCCC-eEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCc--eEEEEEEeCCc
Confidence            999 676665 899999 45544321111112222333   78999999999999999999998754  45556666666


Q ss_pred             cee
Q psy535          153 AFT  155 (460)
Q Consensus       153 ~~~  155 (460)
                      ...
T Consensus       209 ~~~  211 (222)
T 4i0k_A          209 LTF  211 (222)
T ss_dssp             ---
T ss_pred             ccc
Confidence            433

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.71  E-value=9.1e-17  Score=132.98  Aligned_cols=168  Identities=15%  Similarity=0.270  Sum_probs=108.7

Q ss_pred             cceeeeecceeeEEEEEEEecCCC-CCeEEEeeCC--eecC--------------ccccccEEEeec-----CeEEEeec
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKDK--RLLE--------------PYQTKDIVVMQN-----GSLLFTRV  119 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~~--------------~~~~~~~~~~~~-----~~l~i~~~  119 (460)
                      .|....+.+|++++|.|.+.+.+. .+.+.|+|++  ....              +....++.+..+     .+|.|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   85 (210)
T 3d9a_H            6 ESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV   85 (210)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence            355567889999999999988652 3479999852  2210              011245554432     27999999


Q ss_pred             CCCCCeEEEEEEEcCCCCcceeeEEEEEe--eCCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCC-eeEEEcCCCc
Q psy535          120 NQNHQGRYTCTPYNAHGTQGSSGQMEVLV--RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKP-TITWQRRDGV  195 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~~g~~~~~~~~~v~v--~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~-~~~W~~~~~~  195 (460)
                      +.+|+|.|+|.+.+.. .......+.|..  ..+|.+...+... .+..|+.++|.|.+   .+. |.| .+.|++++..
T Consensus        86 ~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~---~g~~P~p~~v~W~~~~~~  160 (210)
T 3d9a_H           86 TTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGS-AAQTNSMVTLGCLV---KGYFPEPVTVTWNSGSLS  160 (210)
T ss_dssp             CGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTT-SCCCSSEEEEEEEE---EEEBSSCCEEEEGGGTBC
T ss_pred             CcccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCc-ccccCCcEEEEEEE---eeEecCCcEEEEeeCCcc
Confidence            9999999999998853 111222333321  1245555444333 46789999999999   454 777 9999985542


Q ss_pred             cC--CcccE-----EEecceEEEccccceeceEEEEEEecccceeee
Q psy535          196 AL--PKNRV-----KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQ  235 (460)
Q Consensus       196 ~~--~~~~~-----~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  235 (460)
                      ..  .....     ....+.|.|......+ |.|+|.|.|..|....
T Consensus       161 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  206 (210)
T 3d9a_H          161 SGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  206 (210)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             cceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            11  01111     1123458888887766 9999999999887543

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.71  E-value=5.6e-17  Score=162.24  Aligned_cols=129  Identities=21%  Similarity=0.436  Sum_probs=104.4

Q ss_pred             eeecceEEEEeecCCCCCCCceeeEEEEEEec--------------CCCCeeeeeccCC---------CCceEEEccCcc
Q psy535          255 VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ--------------GNKDWLPIPVTPP---------GSTQITINRLTP  311 (460)
Q Consensus       255 ~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~---------~~~~~~i~~l~~  311 (460)
                      .....++.|+|.++...+..++.+|.+.|+..              +...|........         ....+.+.+|.|
T Consensus       479 ~~s~~sv~LsW~~p~~~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~L~P  558 (897)
T 2dtg_E          479 RTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKP  558 (897)
T ss_dssp             EECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCEEEECSCCS
T ss_pred             EEecCeEEEEecCCCCCCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCccccccccccccceEeCCCCC
Confidence            45677999999988755554568999988765              1235654332211         247799999999


Q ss_pred             CccEEEEEEE-EcCCCC----CCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcC
Q psy535          312 ATTYEFQVVG-KNELGD----GMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDG  383 (460)
Q Consensus       312 ~~~~~~~~~a-~n~~G~----~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~  383 (460)
                      ++.|.|++.| .|..|.    +..|..+.+++...+|.+|.++.+...+ ++|.|+|++|...++.+.+|.|+|+..+
T Consensus       559 ~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~~Ps~P~~l~~~~~s~tsI~LsW~pP~~~nG~I~~Y~V~~~~~~  636 (897)
T 2dtg_E          559 WTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQA  636 (897)
T ss_dssp             SCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCCCCCCCEEEEEEECSSSCEEEEEECCCCSSSSCSEEECCEEEEC
T ss_pred             CcEEEEEEEEEEeccCCccccCCccceEEEECCCCCCcCCcceEEEeCCCCEEEEEEeCCCCCCCCeeEEEEEEEECC
Confidence            9999999999 999997    6788889999998889999999998887 6999999999877889999999998743

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=6.9e-17  Score=120.79  Aligned_cols=111  Identities=19%  Similarity=0.209  Sum_probs=88.4

Q ss_pred             CCCCCCCcEEEEccCCCCC-CCcceEEE-eec-ceEEEEecCC--CCCCccceEEEEEEEEcCCeeeeccccCCCCcccc
Q psy535          326 GDGMLSNIVVVKTKGPKPG-PPRNVSVT-EVN-NGFVISWQPP--LERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY  400 (460)
Q Consensus       326 G~~~~s~~~~~~~~~~~P~-~p~~~~~~-~~~-~~v~l~W~~~--~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~  400 (460)
                      |.+.+|..+.+.+.+.+|. +|.++++. ..+ ++|.|+|++|  ...++.|.+|+|+|+..+..               
T Consensus         1 G~g~~S~~v~~~T~~~~P~~~P~~~~~~~~~s~~sv~l~W~pp~~~~~~g~i~~Y~v~~~~~~~~---------------   65 (124)
T 2dbj_A            1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAG---------------   65 (124)
T ss_dssp             CCSCCCCCCCCCCSSCCCCSCCEEEEEEECSSSSEEEEEEECCSCCSTTCCEEEEEEEEEEEETT---------------
T ss_pred             CcCCCCCCEEEEccCCCCCCCCcceEEEecCCCCEEEEEEcCCCcccCCCeEeEEEEEEEECCCC---------------
Confidence            6678888999998888886 89999998 464 6999999999  55688999999999743210               


Q ss_pred             cccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                             ....|...  .....+.+.|.+|.|++.|.|+|+|+|..|.|++|+++.++|+
T Consensus        66 -------~~~~~~~~--~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~Gp~S~~~~~~T~  116 (124)
T 2dbj_A           66 -------ISKELLEE--VGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIP  116 (124)
T ss_dssp             -------EEEEEEEE--EESTTSCEEEECCCSSSEEEECEEEEESSCBCCCCCCEEEECC
T ss_pred             -------CccceEEE--eCCCcceEEecCCCCCCEEEEEEEEECCCccCCCCCCEEEEcC
Confidence                   01223221  1245678999999999999999999999999999999999885

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.71  E-value=1.4e-16  Score=139.12  Aligned_cols=182  Identities=16%  Similarity=0.222  Sum_probs=120.1

Q ss_pred             CCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeecc-CCCCceEEEc--cCccCccEEEEEEEE
Q psy535          246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT-PPGSTQITIN--RLTPATTYEFQVVGK  322 (460)
Q Consensus       246 p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~--~l~~~~~~~~~~~a~  322 (460)
                      ..+|.++........+.|+|.|+..+..+.  .|.+.|+..+...|...... ......+.+.  .|.+...|.++|.|.
T Consensus         4 l~~P~nv~~~~~n~~~iL~W~pp~~~~~~v--~Y~V~y~~~~~~~W~~~~~c~~~~~~~c~lt~~~l~~~~~Y~~rV~A~   81 (306)
T 3s98_A            4 LKSPQKVEVDIIDDNFILRWNRSDESVGNV--TFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAE   81 (306)
T ss_dssp             ----CCCEEEEETTEEEEECC--------C--EEEEEEEESSCSSCEECTTCSSBSSSEEECCC---CTTSCEEEEEEEE
T ss_pred             CCCCcEeEEEEECCeEEEEEcCCCCCCCCe--EEEEEEEECCCCCcEECCCccCCCCCEEEccccccCCCCcEEEEEEEE
Confidence            346778877777888999999887655443  49999998777788765321 1233445554  467999999999999


Q ss_pred             cCCCCCCCCCcEEEEccC-CCCCCCcceEEEeecceEEEEecCCCCC------CccceEEEEEEEEcCCeeeeccccCCC
Q psy535          323 NELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEVNNGFVISWQPPLER------ASLIQYYLIKYRTDGSWKTLNKGQIRP  395 (460)
Q Consensus       323 n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~~~~v~l~W~~~~~~------~~~i~~y~i~~~~~~~~~~~~~~~~~~  395 (460)
                      | .|.+.++....+.+.. ..++||. +.+....++|.|+|+|+...      .+.+.+|+|.|+..++-.         
T Consensus        82 n-~~~S~~s~~~~f~~~~~~~~~pP~-v~~~~~~~si~v~w~P~~~~~~~~~~~g~~l~Y~v~y~~~~~~~---------  150 (306)
T 3s98_A           82 K-ENTSSWYEVDSFTPFRKAQIGPPE-VHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGV---------  150 (306)
T ss_dssp             C-SSCEEEEECCCBCHHHHCBCCCCE-EEEEECSSCEEEEEECC---CCCC-----CCEEEEEEEETTTCC---------
T ss_pred             e-CCcCCCEeeeeEechhhCccCCCe-EEEEEcCCEEEEEEECCCCCCcceeccCCcEEEEEEEEECCCCC---------
Confidence            9 7766655444444333 2356665 77776667999999966442      367999999999865400         


Q ss_pred             CcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEee--cCCCCCCCceeEeec
Q psy535          396 EENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN--ELGDGMLSNIVVVKT  459 (460)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n--~~G~s~~s~~~~~~T  459 (460)
                                     .|...    .....+.|.+|.|++.|.|+|+|+|  ..|.|++|+.+.++|
T Consensus       151 ---------------~~~~~----~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T  197 (306)
T 3s98_A          151 ---------------EERIE----NIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKT  197 (306)
T ss_dssp             ---------------CEEEE----EECTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEEC
T ss_pred             ---------------eEEEe----cccceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEe
Confidence                           11110    1346899999999999999999999  679999999988877

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.2e-16  Score=121.82  Aligned_cols=112  Identities=22%  Similarity=0.356  Sum_probs=90.7

Q ss_pred             CCCCCCCcEEEEccCCCCC-CCcceEEEeec-ceEEEEecCC--CCCCccceEEEEEEEEcCCeeeeccccCCCCccccc
Q psy535          326 GDGMLSNIVVVKTKGPKPG-PPRNVSVTEVN-NGFVISWQPP--LERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL  401 (460)
Q Consensus       326 G~~~~s~~~~~~~~~~~P~-~p~~~~~~~~~-~~v~l~W~~~--~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~  401 (460)
                      |.|.+|..+.+++....|. +|.++++...+ +++.|+|++|  ...++.+.+|.|+|+..+.-                
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~----------------   64 (134)
T 2edx_A            1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGE----------------   64 (134)
T ss_dssp             CCCCCCCCCCCSSCCSCCSSCSEEEEEECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSS----------------
T ss_pred             CCCCCcCCEEEEeCCCCCCCCCcccEEEeCCCCEEEEEecCCCccCCCCceeEEEEEEEECCCC----------------
Confidence            6678888899998888886 89999998876 5999999999  56678999999999975430                


Q ss_pred             ccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                             ...+..+.......+.+.|.+|.|++.|.|+|+|+|..|.|++|..+.++|.
T Consensus        65 -------~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  116 (134)
T 2edx_A           65 -------DRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTD  116 (134)
T ss_dssp             -------CCCCEEECCCBTTCSEEEEESCCTTCEEEEEEEEEETTBCCCCCCCEEEECC
T ss_pred             -------CcccEEEEeeCCCccEEEeCCCCCCCEEEEEEEEEcCCCcCCCCCCEEeecC
Confidence                   0111222222356789999999999999999999999999999999998874

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.71  E-value=7.3e-17  Score=137.74  Aligned_cols=128  Identities=16%  Similarity=0.243  Sum_probs=97.7

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC----cceeeeEEEEecCCeeEEcceeeeecceeeEEEEE
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE----PQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQC   78 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C   78 (460)
                      .++|+.+..+     ++|.|.+++.+|+|.|+|.+.+..|.    .....+.|.|..++.+...|....+.+|++++|.|
T Consensus        64 ~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C  143 (256)
T 1nqb_A           64 FKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISC  143 (256)
T ss_dssp             GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEE
T ss_pred             cCCeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEe
Confidence            3579998764     38999999999999999999998652    12345688888778777778888899999999999


Q ss_pred             EEecCCCC----CeEEEee--CCeecCc----------cccccEEEee---cCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           79 HIKANPTF----QYVTWTK--DKRLLEP----------YQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        79 ~~~~~~~~----~~v~W~~--~~~~~~~----------~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      .+.+.+.+    +.+.|+|  ++..+..          ....++....   ..+|.|.+++.+|+|.|+|.|.+..
T Consensus       144 ~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  219 (256)
T 1nqb_A          144 RSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHV  219 (256)
T ss_dssp             EESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             EecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCC
Confidence            99988754    3799999  5554310          0123333322   2369999999999999999998753

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.71  E-value=2e-16  Score=144.99  Aligned_cols=223  Identities=17%  Similarity=0.166  Sum_probs=91.6

Q ss_pred             EecceEEEccccceeceEEEEEEecc--cceeeeeeE--EEEe-cCCCCCCCceeeeeecceEEEEeecCCCCCCCceee
Q psy535          204 IVGGNITIEGLRRVDFGYYECVVSNE--VATIVQAAQ--LVVE-GTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQN  278 (460)
Q Consensus       204 ~~~~~l~i~~~~~~~~g~y~C~a~n~--~g~~~~~~~--l~v~-~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~  278 (460)
                      .....+.|.++.+...+.++..|.|.  .|....+..  +... ..++.+|.++........+.|.|.++.    . ..+
T Consensus       160 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~~~~~~~~P~~v~~~~~~~~~~l~W~pp~----~-~~~  234 (414)
T 3se4_A          160 NIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTY----A-NMT  234 (414)
T ss_dssp             EECSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCEEEECCSCCSSCCCEEEEEEEETTEEEEEEECSS----S-SCE
T ss_pred             cCCcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCcccccccccccccCCCCccEEEEecCCeEEEECCCC----C-CeE
Confidence            34557889999998888888889883  344333322  2222 234566777776555678999999852    2 248


Q ss_pred             EEEEEEec--------CCCCeeeeecc-CCCCceEEEc-cCccCccEEEEEEEEcCCCCCCCCCcEEEEccCCC-CCCCc
Q psy535          279 YVIWYREQ--------GNKDWLPIPVT-PPGSTQITIN-RLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPK-PGPPR  347 (460)
Q Consensus       279 ~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~i~-~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~~~-P~~p~  347 (460)
                      |.+.|+..        +...|..+... ......+.+. +|.+...|.+++.|.|..|.|.++....+.+.... |+||.
T Consensus       235 Y~v~y~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~~~~t~~~~~~~pP~  314 (414)
T 3se4_A          235 FQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPV  314 (414)
T ss_dssp             EEEEEEESGGGSCCCC--CCCCBCSTTTTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCCEEEETTCC-------
T ss_pred             EEEEEEehhccccccccccCceECCCccCCCCCEEcCCcccccCccEEEEEEEecCCCcccccccccccchhccccCCCe
Confidence            99999863        23456544221 1234566665 59999999999999999999999988888887764 57777


Q ss_pred             ceEEEeecceEEEEecCCCCCC------ccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCC
Q psy535          348 NVSVTEVNNGFVISWQPPLERA------SLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG  421 (460)
Q Consensus       348 ~~~~~~~~~~v~l~W~~~~~~~------~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (460)
                       +.+....+++.|.|++|...+      +.+.+|+|.|+..+.-.                        .+. +   ...
T Consensus       315 -l~~~~~~~si~v~W~~P~~~~~~~~~~~~~~~Y~v~y~~~~~~~------------------------~~~-~---~~~  365 (414)
T 3se4_A          315 -FNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNA------------------------ERK-I---IEK  365 (414)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -EEEEECCCeEEEEEECCCCccccchhhcCCeEEEEEEEECCCCc------------------------eEE-E---Eec
Confidence             888765679999999987543      36788999887654300                        000 0   124


Q ss_pred             cceEEECCCCcCceEEEEEEEeec----CCCCCCCceeEeecC
Q psy535          422 STQITINRLTPATTYEFQVVGKNE----LGDGMLSNIVVVKTK  460 (460)
Q Consensus       422 ~~~~~i~~L~p~~~Y~~~v~a~n~----~G~s~~s~~~~~~T~  460 (460)
                      .+.+.|.+|.|++.|.|+|+|.+.    .|.|++|+++.++|.
T Consensus       366 ~~~~~l~~L~p~t~Y~~~V~A~~~~~~~~g~g~~S~~~~~~T~  408 (414)
T 3se4_A          366 KTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTK  408 (414)
T ss_dssp             -------------------------------------------
T ss_pred             CCeEEeCCCCCCCeEEEEEEEEecccccCCCCCCCCCEeEEeC
Confidence            567899999999999999999993    599999999888773

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.71  E-value=1.2e-16  Score=134.56  Aligned_cols=132  Identities=19%  Similarity=0.232  Sum_probs=99.7

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC----eeE-EcceeeeecceeeEEEEEEEecCCCCCeEEEe
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA----KVT-FTPTVQYLPFRLQGVVQCHIKANPTFQYVTWT   92 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p----~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~   92 (460)
                      ++|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|..++    .+. ..+....+.+|+.+.|.|.+.+.|.+ .+.|+
T Consensus        76 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~  153 (231)
T 3ojm_B           76 WSLIMESVVPSDKGNYTCVVENEYGSI-NHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP-HIQWI  153 (231)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCC-EEEEE
T ss_pred             ceEEEecCCcccCEEEEEEEecccCcc-cccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCC-EEEEE
Confidence            489999999999999999999988765 667788887532    222 13556778889999999999998876 89999


Q ss_pred             e----CCeecCccccccEEEe--------ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCc
Q psy535           93 K----DKRLLEPYQTKDIVVM--------QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA  153 (460)
Q Consensus        93 ~----~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~  153 (460)
                      +    +|..+...........        ..+.|.|.++..+|+|.|+|.|.|..|..  +..+.|.|..+|.
T Consensus       154 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~  224 (231)
T 3ojm_B          154 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA--NQSAWLTVLPKQQ  224 (231)
T ss_dssp             EECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEE--EEEEEEEEECCC-
T ss_pred             ECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceE--eeEEEEEEecCCC
Confidence            9    7777654332222221        22469999999999999999999998886  4455566665654

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.71  E-value=1.1e-16  Score=119.29  Aligned_cols=109  Identities=29%  Similarity=0.425  Sum_probs=87.7

Q ss_pred             CCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCC-CCCccceEEEEEEEEcCCeeeeccccCCCCcccccccc
Q psy535          327 DGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEY  404 (460)
Q Consensus       327 ~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~-~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (460)
                      .+..+..+.+.+...+|.+|.++++.... +++.|+|++|. +.++.+.+|.|+|+..+.                    
T Consensus         2 ~sgss~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~g~i~~Y~v~~~~~~~--------------------   61 (120)
T 1x5f_A            2 SSGSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGI--------------------   61 (120)
T ss_dssp             CCCCCSSCCCCCCCCCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTC--------------------
T ss_pred             CCCCCCCEEecCCCCCCCCCCCcEEEecCCCEEEEEECCCCCCCCCcEEEEEEEEEECCC--------------------
Confidence            34455566677777889999999998877 58999999998 777899999999997642                    


Q ss_pred             eecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          405 REQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                           ..|..........+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus        62 -----~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  112 (120)
T 1x5f_A           62 -----ARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQ  112 (120)
T ss_dssp             -----CCCEEEECSSTTCSEEEECSCCTTCEEEEEEEEECSSCEEEECCCEEEECC
T ss_pred             -----CCceEEEeccCCccEEEeCCCCCCCEEEEEEEEECCCccCCCCCCEEEEeC
Confidence                 012222223346789999999999999999999999999999999999884

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.71  E-value=4.6e-17  Score=135.45  Aligned_cols=131  Identities=16%  Similarity=0.181  Sum_probs=92.4

Q ss_pred             ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCC-CcceeeeEEEEe---cCCeeEEcceeeeecceeeEEEEEEE
Q psy535            8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIG-EPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQGVVQCHI   80 (460)
Q Consensus         8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~   80 (460)
                      ..+|+.+..++   +|.|.+++.+|+|.|+|.|.+..+ ........|.|.   .+|.+...+.......|+.++|.|.+
T Consensus        59 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~  138 (216)
T 2xzc_L           59 IPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLL  138 (216)
T ss_dssp             CCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEE
T ss_pred             CCCceEEeccCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEE
Confidence            35788887544   899999999999999999999876 222334567775   45666554333223458899999999


Q ss_pred             ecCC-CCCeEEEeeCCeecCccccc--cEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           81 KANP-TFQYVTWTKDKRLLEPYQTK--DIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        81 ~~~~-~~~~v~W~~~~~~~~~~~~~--~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      .+.+ ++..|+|+|+|..+......  ......+      +.|.|..+..+|+|.|+|.|.|.....
T Consensus       139 ~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  205 (216)
T 2xzc_L          139 NNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  205 (216)
T ss_dssp             EEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             EeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence            9854 33489999999987542000  0000111      258999999999999999999976554

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.70  E-value=9.1e-17  Score=133.49  Aligned_cols=134  Identities=16%  Similarity=0.210  Sum_probs=94.8

Q ss_pred             cccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCCcc---eeeeEEEEecC---CeeEEcceeeeecceeeEE
Q psy535            7 SLETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGEPQ---AAQAYLNVEFP---AKVTFTPTVQYLPFRLQGV   75 (460)
Q Consensus         7 ~~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~---~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~   75 (460)
                      ...+|+.+..+     ++|.|.+++.+|+|.|+|.+.+..+...   ...+.|.|..+   |.+.. +.  .+.+|+.++
T Consensus        66 ~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~  142 (214)
T 2zg1_A           66 ETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTR  142 (214)
T ss_dssp             TTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEE
T ss_pred             cccCceEEeccCCCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEE
Confidence            34589998754     3899999999999999999998763221   24678888764   34332 22  266899999


Q ss_pred             EEEEEecC---CCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535           76 VQCHIKAN---PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus        76 l~C~~~~~---~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      |.|.+.+.   .+++.++|++++..+..   ..  ....+.|.|..+..+|+|.|+|.|.|..+....+..+.|.|
T Consensus       143 L~C~~~~~~~~~p~p~v~W~~~~~~~~~---~~--~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          143 LSCSLPGSCEAGPPLTFSWTGNALSPLD---PE--TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV  213 (214)
T ss_dssp             EEEECTTCCSCSSCCEEEEESSTTSSSC---SS--CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred             EEEEeccCCCCCCCceEEEeCCCCccCC---CC--ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence            99999774   13348999999865431   11  13456899999999999999999999866655666666654

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.70  E-value=1.7e-17  Score=134.23  Aligned_cols=111  Identities=18%  Similarity=0.275  Sum_probs=80.8

Q ss_pred             CCeEEEee-cCCCCCeeEEEEEEeCCCCcceeeeEEEEec--CCee----------------E--Ecc-----eeeeecc
Q psy535           17 DGTLVINP-VGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF--PAKV----------------T--FTP-----TVQYLPF   70 (460)
Q Consensus        17 ~~~L~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~----------------~--~~~-----~~~~~~~   70 (460)
                      +++|.|.+ ++.+|+|.|+|.|.|..|.. +..+.+.|..  ++..                .  ..+     ....+.+
T Consensus        43 ~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (186)
T 1jbj_A           43 DKHLVLQDFSEVEDSGYYVCYTPASNKNT-YLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRG  121 (186)
T ss_dssp             CSEEEEESCCTTTSCEEEEEECSSCCCCC-CEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSS
T ss_pred             CCEEEECCCCccccCEEEEEEEEeCCCcE-EEEEEEEEecccccccccccccccccCCccccccccccccccccceecCC
Confidence            45899999 99999999999999988763 4444444432  2210                0  000     0123448


Q ss_pred             eeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      |+++.|.|.+   |.+ .|+|+|+|..+.....      ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus       122 G~~v~l~C~~---p~p-~i~W~k~g~~i~~~~~------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          122 DGSVLLTCGL---TDK-TIKWLKDGSIISPLNA------TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             SCEEEEECSS---SCS-CEEEEETTEECCCSSC------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CCeEEEEeeC---CCC-eEEEEECCEECcccCC------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            9999999998   444 7999999999863221      45679999999999999999999987654

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.70  E-value=7.6e-17  Score=119.65  Aligned_cols=109  Identities=21%  Similarity=0.398  Sum_probs=89.6

Q ss_pred             CCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccc
Q psy535          326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEY  404 (460)
Q Consensus       326 G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (460)
                      |.+..|..+.+.+...+|.+|.++++...+ +++.|+|.+|.+.+++|.+|.|+|+..+.                    
T Consensus         1 G~s~~S~~~~~~t~~~~P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~--------------------   60 (118)
T 1x3d_A            1 GSSGSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKG--------------------   60 (118)
T ss_dssp             CCCCCCCCCCCCCCCSCCCCCCCCEEEEEETTEEEEECCCCCCCSSCEEEEEEEECTTTS--------------------
T ss_pred             CCCCCCcCEEEEcCCCCCcCCCCcEEeccCCCEEEEEECCCCCCCCcceEEEEEEecCCC--------------------
Confidence            567788888888888889999999988776 69999999998778899999999986432                    


Q ss_pred             eecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          405 REQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                          +..|..+..  ...+.++|.+|.|++.|.|||+|+|..|.|++|..+.++|.
T Consensus        61 ----~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~  110 (118)
T 1x3d_A           61 ----NGEFCQCYM--GSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS  110 (118)
T ss_dssp             ----SSCCEEEEE--ESCSEEEEESCCTTCEEEEECCEEESSCBCCCCCCEEEECS
T ss_pred             ----CCCeEEeec--cCCcEEEeCCCCCCCEEEEEEEEEECCCCCCCccCEEEEcC
Confidence                012322211  23478999999999999999999999999999999998874

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.70  E-value=5.2e-17  Score=136.99  Aligned_cols=167  Identities=13%  Similarity=0.220  Sum_probs=108.7

Q ss_pred             ceeeeecceeeEEEEEEEecCCCCC-eEEEeeCC--eec----------CccccccEEEee---cCeEEEeecCCCCCeE
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPTFQ-YVTWTKDK--RLL----------EPYQTKDIVVMQ---NGSLLFTRVNQNHQGR  126 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~--~~~----------~~~~~~~~~~~~---~~~l~i~~~~~~d~G~  126 (460)
                      |....+.+|++++|.|.+.+.+..+ .+.|+|++  ..+          ......++....   ..+|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            6677788999999999998865433 69999863  221          001123444332   2379999999999999


Q ss_pred             EEEEEEcCCCCc-ceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CC-CeeEEEcCCCccCCc
Q psy535          127 YTCTPYNAHGTQ-GSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QK-PTITWQRRDGVALPK  199 (460)
Q Consensus       127 y~C~~~~~~g~~-~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~-~~~~W~~~~~~~~~~  199 (460)
                      |+|.+.+..+.. .......|.|.    .+|.+...+... ....|+.++|.|.+   .+. |. +.+.|++++ ..+..
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~---~g~~p~~~~v~W~k~g-~~l~~  180 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSS-EELQANKATLVCLI---SDFFPGAVTVAWKADG-APVKA  180 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCH-HHHTTSCCCEEECC---CBCSSCCCEEEEEETT-EECCS
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCCh-hHhcCCceEEEEEE---EEEcCCceEEEEEECC-EECCC
Confidence            999999887621 11112233442    456655544333 23458899999998   453 44 489999944 44432


Q ss_pred             ccEE-----------EecceEEEccccceeceEEEEEEecccceee
Q psy535          200 NRVK-----------IVGGNITIEGLRRVDFGYYECVVSNEVATIV  234 (460)
Q Consensus       200 ~~~~-----------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  234 (460)
                      ....           .....|.|..+...|.|.|+|.|.|..+...
T Consensus       181 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  226 (234)
T 2j6e_L          181 GVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE  226 (234)
T ss_dssp             SEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCC
T ss_pred             CccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceE
Confidence            2110           0113578888888999999999999876543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.70  E-value=1e-16  Score=136.81  Aligned_cols=144  Identities=15%  Similarity=0.212  Sum_probs=100.8

Q ss_pred             ccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec---------------CCeeEEcceeee
Q psy535            8 LETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF---------------PAKVTFTPTVQY   67 (460)
Q Consensus         8 ~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~   67 (460)
                      ..+|+.+..++     +|.|.+++.+|+|.|+|.+.+..+........|.|..               ++.+...|....
T Consensus        65 ~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~  144 (253)
T 3uzq_A           65 FQGKATITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLA  144 (253)
T ss_dssp             GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEE
T ss_pred             CCCcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEE
Confidence            45788887654     4999999999999999999986655434567777774               456677788888


Q ss_pred             ecceeeEEEEEEEecCCCC---CeEEEeeC--CeecC----------ccccccEEEeec---CeEEEeecCCCCCeEEEE
Q psy535           68 LPFRLQGVVQCHIKANPTF---QYVTWTKD--KRLLE----------PYQTKDIVVMQN---GSLLFTRVNQNHQGRYTC  129 (460)
Q Consensus        68 ~~~g~~~~l~C~~~~~~~~---~~v~W~~~--~~~~~----------~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C  129 (460)
                      +.+|++++|.|.+.+.+.+   ..+.|+|+  +....          .....++.....   .+|.|.+++.+|+|.|+|
T Consensus       145 v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C  224 (253)
T 3uzq_A          145 VSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFC  224 (253)
T ss_dssp             ECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEE
Confidence            9999999999999887654   37999984  22211          001123332222   259999999999999999


Q ss_pred             EEEcCCCCcceeeEEEEEeeCCC
Q psy535          130 TPYNAHGTQGSSGQMEVLVRKPP  152 (460)
Q Consensus       130 ~~~~~~g~~~~~~~~~v~v~~~p  152 (460)
                      .|.|..+.. ...-..|.|...+
T Consensus       225 ~~~n~~~~~-fg~gt~l~v~~~~  246 (253)
T 3uzq_A          225 QRSNEVPWT-FGGGTKLEIKRPL  246 (253)
T ss_dssp             EECSSSSCC-BCCCEEEEECCC-
T ss_pred             EEccCCCcE-ECCCEEEEEcCCC
Confidence            999865433 2333345555443

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.70  E-value=1.9e-16  Score=136.57  Aligned_cols=151  Identities=21%  Similarity=0.287  Sum_probs=93.0

Q ss_pred             cceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEE--
Q psy535            9 ETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHI--   80 (460)
Q Consensus         9 ~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~--   80 (460)
                      .+|+.+..+     ++|.|.+++.+|+|.|+|.+.+..+.. ....+.|.|.  +   ..|....+.+|++++|.|.+  
T Consensus        70 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~---~~p~~~~v~~G~~v~L~C~~~~  144 (268)
T 3mj6_A           70 QNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--P---EEPRDLRVRVGDTTQMRCSIQS  144 (268)
T ss_dssp             TTTEEECSCTTTTBCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--C---CCCSEEEEETTCCEEECCBCEE
T ss_pred             cCceEEeecCCCCEEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--c---cCCCccccccCCcEEEEEEecC
Confidence            477777443     699999999999999999999875543 2344555553  1   24556778899999999999  


Q ss_pred             -ecCCCCCeEEEeeCCeec-Cc-------------------cccccEEE-----eecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           81 -KANPTFQYVTWTKDKRLL-EP-------------------YQTKDIVV-----MQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        81 -~~~~~~~~v~W~~~~~~~-~~-------------------~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                       .+.|.+ .+.|++++... ..                   ....++..     ..++.|.|.++..+|+|.|+|.|.|.
T Consensus       145 ~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~  223 (268)
T 3mj6_A          145 TEEKRVT-KVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVG  223 (268)
T ss_dssp             SSSSCCC-EEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCCCcc-ceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcC
Confidence             454554 89999943211 00                   00112222     23467999999999999999999997


Q ss_pred             CCCcceeeEEEEEe-eCCCceeeCCCcccccCCCC
Q psy535          135 HGTQGSSGQMEVLV-RKPPAFTIKPEAMYQRKVGE  168 (460)
Q Consensus       135 ~g~~~~~~~~~v~v-~~~p~~~~~~~~~~~~~~g~  168 (460)
                      .|..  ...+.|.| ..+|.+.+.|... .+..++
T Consensus       224 ~g~~--~~~~~l~V~~~~p~~~~~p~~~-~~~~~q  255 (268)
T 3mj6_A          224 KLES--RKTIVLHVVQDEFQRTISPTPP-TDKGQQ  255 (268)
T ss_dssp             TEEE--EEEEEEEEECC------------------
T ss_pred             CceE--EEEEEEEEEcCCCeeeeCCCCC-CCCcce
Confidence            7764  44455555 4566666666544 344444

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=1.9e-16  Score=117.79  Aligned_cols=103  Identities=31%  Similarity=0.502  Sum_probs=83.2

Q ss_pred             cEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCcee
Q psy535          333 IVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKD  411 (460)
Q Consensus       333 ~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (460)
                      .+.+.+...+|.+|.++.+.... +++.|+|++|.+.++++.+|.|+|+..+.                         ..
T Consensus         8 ~~~~~~~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~-------------------------~~   62 (119)
T 2ed7_A            8 KPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGD-------------------------NR   62 (119)
T ss_dssp             CSSCCCSSSSCCCCSCCEEEEECSSCEEEECCCCSCCSSCEEEEEEEEEESSC-------------------------CC
T ss_pred             CccCCCCCCCCcCCcceEEEecCCCEEEEEEeCCCCCCCcEEEEEEEEEeCCC-------------------------Cc
Confidence            33345566779999999998876 69999999998878899999999997543                         01


Q ss_pred             eeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          412 WLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       412 ~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      |..........+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus        63 ~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  111 (119)
T 2ed7_A           63 ERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQ  111 (119)
T ss_dssp             CEEEECCCTTCCEEEECSCCSSSEEEECCEEEESSCBCSCCCCEEEECC
T ss_pred             ceeeEeecCCceEEEeCCCCCCCEEEEEEEEEcCCccCCCcCCEEEEeC
Confidence            2222233356789999999999999999999999999999999998874

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.70  E-value=1.3e-16  Score=135.55  Aligned_cols=172  Identities=12%  Similarity=0.152  Sum_probs=109.6

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee----------------CCeecCcc-ccccEEEee----cCeEEE
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK----------------DKRLLEPY-QTKDIVVMQ----NGSLLF  116 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~----------------~~~~~~~~-~~~~~~~~~----~~~l~i  116 (460)
                      .+...|....+.+|++++|.|.+.+.+.+ .|.|+|                ++...... ...++....    +.+|.|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I   81 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDFQAT-TMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV   81 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCCC-SEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEE
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCCCce-EEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEE
Confidence            34556777888999999999999887665 799998                22222211 113444433    236999


Q ss_pred             eecCCCCCeEEEEEEEcCCCC--cceeeEEEEEee------CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC--e
Q psy535          117 TRVNQNHQGRYTCTPYNAHGT--QGSSGQMEVLVR------KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP--T  186 (460)
Q Consensus       117 ~~~~~~d~G~y~C~~~~~~g~--~~~~~~~~v~v~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~--~  186 (460)
                      .+++.+|+|.|+|.+.+..+.  ........|.|.      .+|.+.+.+.....+..|+.++|.|.+   .+.+++  .
T Consensus        82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~---~g~~p~~~~  158 (246)
T 4dzb_B           82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA---TGFYPDHVE  158 (246)
T ss_dssp             CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEE---EEEBSSCEE
T ss_pred             CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEE---ccCcCCceE
Confidence            999999999999999875431  112222334443      255554433222245669999999998   454443  8


Q ss_pred             eEEEcCCCccCCcccEE----------------EecceEEEcccccee-ceEEEEEEecccceee
Q psy535          187 ITWQRRDGVALPKNRVK----------------IVGGNITIEGLRRVD-FGYYECVVSNEVATIV  234 (460)
Q Consensus       187 ~~W~~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~~-~g~y~C~a~n~~g~~~  234 (460)
                      +.|+++ +..+......                .....|.|......| .|.|+|.|.|......
T Consensus       159 v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          159 LSWWVN-GKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             EEEEET-TEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             EEEEEC-CEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            999994 4443321111                011236777777777 8999999998765543

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.70  E-value=9.6e-17  Score=134.43  Aligned_cols=133  Identities=15%  Similarity=0.118  Sum_probs=100.3

Q ss_pred             CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCe
Q psy535           17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR   96 (460)
Q Consensus        17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~   96 (460)
                      +++|.|.+++.+|+|.|+|.|.+..+........+.+..+|.+...+.......++.+.+.|.+.+.++++.+.|++++.
T Consensus        82 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~  161 (225)
T 4fmk_A           82 DATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLG  161 (225)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSC
T ss_pred             cEEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCc
Confidence            35899999999999999999999877655566667777777766666556666677788887776655555899999876


Q ss_pred             ecCccccccEEEee------cCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCC
Q psy535           97 LLEPYQTKDIVVMQ------NGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKP  151 (460)
Q Consensus        97 ~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~  151 (460)
                      .+...  .......      .+.|.|.++..+|+|.|+|.|.|..+....+..++|.|++.
T Consensus       162 ~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y~  220 (225)
T 4fmk_A          162 GEAKD--TQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRYH  220 (225)
T ss_dssp             CEEEE--EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTTC
T ss_pred             cccCC--cceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEEC
Confidence            65321  1111111      23599999999999999999999988887888888888764

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.70  E-value=2.5e-16  Score=134.90  Aligned_cols=168  Identities=15%  Similarity=0.224  Sum_probs=101.5

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--C-ee--cCccc-------------cccEEE----eecCeE
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--K-RL--LEPYQ-------------TKDIVV----MQNGSL  114 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~-~~--~~~~~-------------~~~~~~----~~~~~l  114 (460)
                      |.+...|....+.+|++++|.|.+.+.+.+ .+.|+|.  + ..  +....             ..+...    ....+|
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTG-YIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             --------CEEEETTCCEEEECCC-----C-EEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             cccccCCceeEecCCCcEEEEEEEccCCCc-EEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            455566777889999999999999887754 7999982  1 11  00000             011111    122369


Q ss_pred             EEeecCCCCCeEEEEEEEcCCCCc-ceeeEEEEEeeC-----------------CCceeeCCCcccccCCCCeEEEEeee
Q psy535          115 LFTRVNQNHQGRYTCTPYNAHGTQ-GSSGQMEVLVRK-----------------PPAFTIKPEAMYQRKVGESVDMHCEA  176 (460)
Q Consensus       115 ~i~~~~~~d~G~y~C~~~~~~g~~-~~~~~~~v~v~~-----------------~p~~~~~~~~~~~~~~g~~~~l~C~~  176 (460)
                      .|.+++.+|+|.|+|.+.+..+.. .......|.|..                 +|.+...+... .+..|+.++|.|.+
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~-~v~~G~~v~L~C~~  160 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSV-SMPVRKAVTLNCLY  160 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCE-EEETTCCEEECCEE
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEE-EEcCCCCEEEEEEC
Confidence            999999999999999999876521 122233344443                 23445555544 67899999999988


Q ss_pred             eccCCCCCCeeEEEcCCCccC--------------CcccEEEe------cceEEEccccceeceEEEEEEec
Q psy535          177 QEAEGTQKPTITWQRRDGVAL--------------PKNRVKIV------GGNITIEGLRRVDFGYYECVVSN  228 (460)
Q Consensus       177 ~~~~~~p~~~~~W~~~~~~~~--------------~~~~~~~~------~~~l~i~~~~~~~~g~y~C~a~n  228 (460)
                      .  ...+.+.+.|++......              ...++...      ...|.|.+++.+|+|.|.|.+.+
T Consensus       161 ~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          161 E--TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE  230 (259)
T ss_dssp             E--CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred             C--CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence            3  234788999998432110              01233332      23599999999999999999974

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.70  E-value=5.2e-16  Score=133.01  Aligned_cols=168  Identities=18%  Similarity=0.271  Sum_probs=111.1

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCC-----CCeEEEeeC--CeecC----------ccccccEEEeec---CeEEE
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPT-----FQYVTWTKD--KRLLE----------PYQTKDIVVMQN---GSLLF  116 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-----~~~v~W~~~--~~~~~----------~~~~~~~~~~~~---~~l~i  116 (460)
                      +.+...|....+.+|++++|.|.+.+.+.     .+.+.|+|.  +..+.          .....++....+   .+|.|
T Consensus         6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I   85 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTI   85 (264)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEE
Confidence            34556777788899999999999988761     347999984  22111          001234444332   37999


Q ss_pred             eecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC------------------cee-eCCCcccccCCCCeEEEEeeee
Q psy535          117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP------------------AFT-IKPEAMYQRKVGESVDMHCEAQ  177 (460)
Q Consensus       117 ~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p------------------~~~-~~~~~~~~~~~g~~~~l~C~~~  177 (460)
                      .+++.+|+|.|+|.+.+..+.. ......|.|..+|                  .+. ..+... .+..|+.++|.|.+ 
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~-~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~-  162 (264)
T 2gjj_A           86 GSVKAEDLAVYYCQQYSNYPWT-FGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPE-VVKTGASVKISCKA-  162 (264)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCE-ECCCEEEEEECC-------------------CCEEEECCCE-EECTTCCEEEEEEE-
T ss_pred             CCCCHHHCEEEEEEEecCCccE-ecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCE-EEcCCCcEEEEEEE-
Confidence            9999999999999998865421 1122345555442                  222 222223 57899999999998 


Q ss_pred             ccCCCCC--CeeEEEcCC-CccCC------------------cccEEEe------cceEEEccccceeceEEEEEEecc
Q psy535          178 EAEGTQK--PTITWQRRD-GVALP------------------KNRVKIV------GGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       178 ~~~~~p~--~~~~W~~~~-~~~~~------------------~~~~~~~------~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                        .+.+.  +.+.|++++ +....                  ..++...      ...|.|.++..+|+|.|.|.+.|.
T Consensus       163 --~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          163 --SGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             --ESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             --eCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence              45553  799999853 11110                  1233332      237999999999999999999985

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.70  E-value=8.9e-17  Score=135.31  Aligned_cols=120  Identities=19%  Similarity=0.304  Sum_probs=90.6

Q ss_pred             EeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC---eeEEcceeeeecceeeE-EEEEEE-ecCCCCCe
Q psy535           14 IKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA---KVTFTPTVQYLPFRLQG-VVQCHI-KANPTFQY   88 (460)
Q Consensus        14 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~-~l~C~~-~~~~~~~~   88 (460)
                      +..++.|.|.+++.+|+|.|+|.|.+..+......+.|.|..+|   .+...+....+.+|+.+ .|.|.+ .+.|.+ .
T Consensus        73 ~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p-~  151 (231)
T 2pet_A           73 LDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAP-K  151 (231)
T ss_dssp             ECTTCCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCC-E
T ss_pred             cCCCceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCC-E
Confidence            87888999999999999999999999873334778889998764   44445555566788887 999999 777765 8


Q ss_pred             EEEeeCCeecCccc--cccEEEeec------------CeEEEeecCCCCCeEEEEEEEcC
Q psy535           89 VTWTKDKRLLEPYQ--TKDIVVMQN------------GSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        89 v~W~~~~~~~~~~~--~~~~~~~~~------------~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      +.|++++..+....  ..+..+...            +.|.|.....+|+|.|+|.|.|.
T Consensus       152 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          152 ITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             EEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             EEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            99999999886433  122222221            45788755666799999999995

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.69  E-value=2.6e-16  Score=131.66  Aligned_cols=174  Identities=14%  Similarity=0.205  Sum_probs=106.9

Q ss_pred             cceeeeecceeeEEEEEEEecCCC-CCeEEEeeCC--eecC---------------ccccccEEEee-----cCeEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKDK--RLLE---------------PYQTKDIVVMQ-----NGSLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~~---------------~~~~~~~~~~~-----~~~l~i~~  118 (460)
                      .|....+.+|++++|.|.+.+.+. ...+.|+|++  ..+.               .....++.+..     +.+|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (227)
T 1mju_H            6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (227)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence            455667889999999999988651 3479999853  2210               00124555443     24799999


Q ss_pred             cCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC----CCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcC
Q psy535          119 VNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRR  192 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~  192 (460)
                      ++.+|+|.|+|.+.+..+.. ......|.|..    +|.+...+... .+..|+.++|.|.+   .+ .|.+ .+.|+++
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~-~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~---~g~~P~p~~v~W~~~  160 (227)
T 1mju_H           86 LTSDDSAVYYCANKLGWFPY-WGQGTLVTVSAAKTTAPSVYPLAPVC-GDTSGSSVTLGCLV---KGYFPEPVTLTWNSG  160 (227)
T ss_dssp             CCGGGCEEEEEEEEETTEEE-ECCCEEEEECSSCCBCCEEEEECCCC-------CEEEEEEE---EEEBSSCCEEEEGGG
T ss_pred             CCcccCEEEEEEECCCCceE-EcCcEEEEEcCCCCCCCEEEEecCCc-cccCCCcEEEEEEe---ecEeCCCeEEEEecC
Confidence            99999999999998753211 11123455543    34444332222 35679999999999   45 4666 9999985


Q ss_pred             CCccCC---cccE-----EEecceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535          193 DGVALP---KNRV-----KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       193 ~~~~~~---~~~~-----~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                      +. .+.   ....     ....+.|.|.....++ |.|+|.|.|..+.......+.+.
T Consensus       161 g~-~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~  216 (227)
T 1mju_H          161 SL-SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPR  216 (227)
T ss_dssp             TB-CTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CC-cCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCC
Confidence            43 321   1111     1123468888888777 99999999977665555544444

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.69  E-value=9.2e-17  Score=136.74  Aligned_cols=133  Identities=13%  Similarity=0.139  Sum_probs=88.9

Q ss_pred             eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEec-CCCCCeEEEeeCCee
Q psy535           19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA-NPTFQYVTWTKDKRL   97 (460)
Q Consensus        19 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~v~W~~~~~~   97 (460)
                      +|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|..+|.+...+... ...|..+.|.|.+.+ .|.+..|+|+++|..
T Consensus        83 sL~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~L~V~~~P~v~~~~~~~-~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~  160 (248)
T 3pv7_A           83 SLRLPGIQLEEAGEYRCEVVVTPLKA-QGTVQLEVVASPASRLLLDQV-GMKENEDKYMCESSGFYPEAINITWEKQTQK  160 (248)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSS
T ss_pred             EEEeCCCCHHHCeEEEEEEEeCCccc-eeEEEEEEecCCceEEecCCc-cccCCCcEEEEEEccEECCCeEEEEEECCcc
Confidence            59999999999999999999987654 678899999999887766533 445778889999998 555437999999864


Q ss_pred             cCccc-----c--ccEEEe------ecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCce
Q psy535           98 LEPYQ-----T--KDIVVM------QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAF  154 (460)
Q Consensus        98 ~~~~~-----~--~~~~~~------~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~  154 (460)
                      +....     .  ......      ....|.|.....+|.|.|+|.|.|..+....+..+.|.| ..|.+
T Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V-~~p~~  229 (248)
T 3pv7_A          161 FPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA-ARHSL  229 (248)
T ss_dssp             SCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--------
T ss_pred             CCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE-cCCCC
Confidence            42110     0  011111      123578888889999999999999988776777777777 34444

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.69  E-value=1.7e-16  Score=118.14  Aligned_cols=109  Identities=26%  Similarity=0.468  Sum_probs=87.9

Q ss_pred             CCCCCCCcEEEEccCCCCCCCcceEEE-eec-ceEEEEecCCCCC-CccceEEEEEEEEcCCeeeeccccCCCCcccccc
Q psy535          326 GDGMLSNIVVVKTKGPKPGPPRNVSVT-EVN-NGFVISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG  402 (460)
Q Consensus       326 G~~~~s~~~~~~~~~~~P~~p~~~~~~-~~~-~~v~l~W~~~~~~-~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~  402 (460)
                      |.+.+|..+.+.+...+|.+|.++.+. ... +++.|+|++|.+. +.+|.+|.|+|+..+.                  
T Consensus         1 G~s~~S~~~~~~t~~~~P~~P~~~~~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~------------------   62 (120)
T 2crm_A            1 GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSN------------------   62 (120)
T ss_dssp             CCCTTCSCCSCCSCCCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSS------------------
T ss_pred             CCCCCcCCEEEEeCCCCCCCCCCCEEeeccCCCEEEEEECCCCcCCCCeeeEEEEEEccCCC------------------
Confidence            567888888888888889999998887 454 6999999998876 4589999999997532                  


Q ss_pred             cceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                            ...|..+..  ...+.++|.+|.|++.|.|||+|+|..|.|++|+.+.++|.
T Consensus        63 ------~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~  112 (120)
T 2crm_A           63 ------GNKWEMIYS--GATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTP  112 (120)
T ss_dssp             ------SCCCEEEEC--SSCSEEEECSCCTTSCEEEEEEEEETTEECCCCCCCCCCCC
T ss_pred             ------CcCCEEEEe--ccccEEEECCCCCCCEEEEEEEEEcCCccCCCcccEEEEcC
Confidence                  012333321  34678999999999999999999999999999999888874

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.69  E-value=2.7e-15  Score=137.39  Aligned_cols=221  Identities=16%  Similarity=0.129  Sum_probs=147.3

Q ss_pred             ccccceeceEEEEEEecccceeeeeeEEEE---ecCCCCCCCceeeeeecceEEEEeecCCCCCC------CceeeEEEE
Q psy535          212 EGLRRVDFGYYECVVSNEVATIVQAAQLVV---EGTQPHAPYNITGVATEFSVTLEWLPGYSGGP------DLKQNYVIW  282 (460)
Q Consensus       212 ~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v---~~~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~------~~~~~~~~~  282 (460)
                      ..+.....+.++..|.| .+.+..+.....   ....+.+|. +.......++.|+|. +...++      .....|.+.
T Consensus        70 ~~l~~~~~Y~~rV~A~n-~~~S~~s~~~~~~~~~~~~~~pP~-v~~~~~~~si~v~w~-P~~~~g~~~~~~~~~~~Y~v~  146 (414)
T 3se4_A           70 LKLNVYEEIKLRIRAEK-ENTSSWYEVDSFTPFRKAQIGPPE-VHLEAEDKAIVIHIS-PGTKDSVMWALDGLSFTYSLV  146 (414)
T ss_dssp             SCCCTTSCEEEEEEEEE-TTEEEEEECCCBCHHHHCCCCCCE-EEEEECSSCEEEEEE-CSSSSCTTTGGGGSSCEEEEE
T ss_pred             ccccCCCcEEEEEEEee-CCcCCCEecCceeecccceeCCCe-EEEEEcCCEEEEEEE-cCCCCCceeeeecCcEEEEEE
Confidence            34566677889999999 443332211111   122344454 455555668999999 432221      134689888


Q ss_pred             EEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcC--CCCCCCCCcEEEEccCCCC-CCCcceEEEeecceEE
Q psy535          283 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE--LGDGMLSNIVVVKTKGPKP-GPPRNVSVTEVNNGFV  359 (460)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~--~G~~~~s~~~~~~~~~~~P-~~p~~~~~~~~~~~v~  359 (460)
                      |+..+.........   ....+.|.+|.++..|.+++.|.|.  .|.|..|....+.+...+| .+|.++.+.....++.
T Consensus       147 y~~~~~~~~~~~~~---~~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~~~~~~~~P~~v~~~~~~~~~~  223 (414)
T 3se4_A          147 IWKNSSGVEERIEN---IYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV  223 (414)
T ss_dssp             EEETTTCCEEEEEE---ECSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCEEEECCSCCSSCCCEEEEEEEETTEEE
T ss_pred             EEECCCCceEEEec---CCcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCcccccccccccccCCCCccEEEEecCCeE
Confidence            88776554333322   4567999999999999999999994  6778888888888776544 6899999887667899


Q ss_pred             EEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccC-CCCcceEEEC-CCCcCceEE
Q psy535          360 ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT-PPGSTQITIN-RLTPATTYE  437 (460)
Q Consensus       360 l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~-~L~p~~~Y~  437 (460)
                      |+|++|..    ..+|.|+|+.... ..                ....+...|..+... ....+.+.+. +|.+++.|.
T Consensus       224 l~W~pp~~----~~~Y~v~y~~~~~-~~----------------~~~~~~~~w~~~~~~~~~~~~~~~~t~~l~~~~~Y~  282 (414)
T 3se4_A          224 LKWDYTYA----NMTFQVQWLHAFL-KR----------------NPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYL  282 (414)
T ss_dssp             EEEECSSS----SCEEEEEEEESGG-GS----------------CCCC--CCCCBCSTTTTBSSSEEEEEGGGSCSSEEE
T ss_pred             EEECCCCC----CeEEEEEEEehhc-cc----------------cccccccCceECCCccCCCCCEEcCCcccccCccEE
Confidence            99999742    3499999996300 00                000012234433211 1234555665 699999999


Q ss_pred             EEEEEeecCCCCCCCceeEeec
Q psy535          438 FQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       438 ~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      |+|+|.|..|.|++|....+.|
T Consensus       283 ~rV~A~n~~g~s~~s~~~~~~t  304 (414)
T 3se4_A          283 LRVQASDGNNTSFWSEEIKFDT  304 (414)
T ss_dssp             EEEEEECSSSEEEECCCEEEET
T ss_pred             EEEEEecCCCcccccccccccc
Confidence            9999999999999998888776

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.69  E-value=7.7e-16  Score=133.19  Aligned_cols=182  Identities=15%  Similarity=0.227  Sum_probs=112.0

Q ss_pred             ceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC---------------ccccccEEEeec-----CeEEEeec
Q psy535           63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE---------------PYQTKDIVVMQN-----GSLLFTRV  119 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~---------------~~~~~~~~~~~~-----~~l~i~~~  119 (460)
                      |....+.+|++++|.|.+.+.. +...+.|+|..  ....               .....++.+..+     .+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            6667788999999999998752 23479999832  1110               001134444432     26999999


Q ss_pred             CCCCCeEEEEEEEcCC-------CCcceeeEEEEEeeC---------------CCceeeCCCcccccCCCCeEEEEeeee
Q psy535          120 NQNHQGRYTCTPYNAH-------GTQGSSGQMEVLVRK---------------PPAFTIKPEAMYQRKVGESVDMHCEAQ  177 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~~-------g~~~~~~~~~v~v~~---------------~p~~~~~~~~~~~~~~g~~~~l~C~~~  177 (460)
                      +.+|+|.|+|.+.+..       ..........|.|..               ++.+...+.  ..+..|++++|.|.+ 
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~--~~v~~G~~v~L~C~~-  163 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS--VSKGLRQTATLTCTG-  163 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE--EEECTTCCEEEEEEC-
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc--EEEecCCCEEEEEEe-
Confidence            9999999999998861       111122233444444               455554454  378899999999998 


Q ss_pred             ccCC-CC-CCeeEEEcCCC-ccC-------------CcccEEEe----cceEEEccccceeceEEEEEEecccce---ee
Q psy535          178 EAEG-TQ-KPTITWQRRDG-VAL-------------PKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVAT---IV  234 (460)
Q Consensus       178 ~~~~-~p-~~~~~W~~~~~-~~~-------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g~---~~  234 (460)
                        .+ .+ .+.+.|++... ...             ...++...    ...|.|.+++.+|+|.|.|.+.|..+.   ..
T Consensus       164 --~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g  241 (280)
T 3fku_X          164 --NSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFG  241 (280)
T ss_dssp             --CCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEEB
T ss_pred             --cCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCceEEC
Confidence              44 33 47899987321 111             01233332    124999999999999999999987521   22


Q ss_pred             eeeEEEEecCCCCCC
Q psy535          235 QAAQLVVEGTQPHAP  249 (460)
Q Consensus       235 ~~~~l~v~~~~p~~p  249 (460)
                      ....|.|...++.+|
T Consensus       242 ~~t~l~V~~~~~~~P  256 (280)
T 3fku_X          242 GGTKLTVLGQPKAAP  256 (280)
T ss_dssp             CCCEEEEC-------
T ss_pred             CCEEEEECCCCCCCC
Confidence            334566654433333

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.69  E-value=8.6e-17  Score=133.39  Aligned_cols=130  Identities=17%  Similarity=0.177  Sum_probs=93.2

Q ss_pred             ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe----cCCeeEEcceeeeecceeeEEEEEEE
Q psy535            8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVVQCHI   80 (460)
Q Consensus         8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~   80 (460)
                      ..+|+.+..++   +|.|.+++.+|+|.|+|.|.+..+........|.|.    .+|.+...+.......|+.++|.|.+
T Consensus        60 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~  139 (212)
T 1q0x_L           60 VPARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTI  139 (212)
T ss_dssp             CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEE
T ss_pred             ccccEEEEeeCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEE
Confidence            35788876643   899999999999999999999766433345667773    46666655444344568899999999


Q ss_pred             ecCCCC-CeEEEeeCCeecCcccc-ccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           81 KANPTF-QYVTWTKDKRLLEPYQT-KDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        81 ~~~~~~-~~v~W~~~~~~~~~~~~-~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      .+.+++ ..|+|+|+|..+..... .......+      ..|.|.++..+|+|.|+|.|.|....
T Consensus       140 ~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (212)
T 1q0x_L          140 TDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS  204 (212)
T ss_dssp             EEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             EEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence            986543 37999999998753211 01111111      25889999999999999999986543

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.69  E-value=9.8e-17  Score=135.64  Aligned_cols=134  Identities=14%  Similarity=0.155  Sum_probs=95.4

Q ss_pred             cccceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEe---cCCeeEEcceeeeecceeeEEEEEEE
Q psy535            7 SLETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE---FPAKVTFTPTVQYLPFRLQGVVQCHI   80 (460)
Q Consensus         7 ~~~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~   80 (460)
                      ..++|+.+..+   ++|.|.+++.+|+|.|+|.+.+..+........|.|.   .+|.+...+......+|+.++|.|.+
T Consensus        80 ~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~  159 (237)
T 3sob_L           80 GVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLL  159 (237)
T ss_dssp             TCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEE
T ss_pred             CCCCcEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEE
Confidence            34678887743   4899999999999999999998765433455677774   45666555544445568889999999


Q ss_pred             ecCCC-CCeEEEeeCCeecCccc--cccE------EEeecCeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535           81 KANPT-FQYVTWTKDKRLLEPYQ--TKDI------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS  140 (460)
Q Consensus        81 ~~~~~-~~~v~W~~~~~~~~~~~--~~~~------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~  140 (460)
                      .+.++ .+.++|+++|..+....  ....      .......|.|..+..+|+|.|+|.|.|.......
T Consensus       160 ~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  228 (237)
T 3sob_L          160 NNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV  228 (237)
T ss_dssp             EEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCE
T ss_pred             cccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCce
Confidence            88544 45899999999876321  0000      0111235888999999999999999998755433

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A

Probab=99.69  E-value=7e-16  Score=128.98  Aligned_cols=185  Identities=16%  Similarity=0.287  Sum_probs=118.3

Q ss_pred             CCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCC----Ceeeeecc---CCCCceEEEccCccCccE
Q psy535          244 TQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK----DWLPIPVT---PPGSTQITINRLTPATTY  315 (460)
Q Consensus       244 ~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~i~~l~~~~~~  315 (460)
                      .+|..|.++.+ ......++++|.++..++......|.+.|+.....    .+......   ......+...++.....|
T Consensus        28 ~pP~~P~~l~C~~~~~~~~~c~W~p~~~~~~~~~~~y~l~Y~~~~~~~~~~~~~~C~~~~~~~~~~C~~~~~~l~~~~~Y  107 (236)
T 1axi_B           28 NSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPY  107 (236)
T ss_dssp             ----CCCEEEEEBSSSSCEEEEECCC--------CSCEEEEEECC------CCEECSCSSTTCTTEEEECGGGCCSSSEE
T ss_pred             CCCCCCcCCeEEeCCCCEEEEEecCCCCCCCCCCceEEEEEEeCCCCcCCCceeeCCCCCCCCCEEEEECCcCCcccceE
Confidence            47888888864 34667899999986554433113566666544322    23332211   113344556678889999


Q ss_pred             EEEEEEEcCCCCCCCCCcEEEEcc-CCCCCCCcceE--EEeec-----ceEEEEecCCCCC---Cc-cceEEEEEEEEcC
Q psy535          316 EFQVVGKNELGDGMLSNIVVVKTK-GPKPGPPRNVS--VTEVN-----NGFVISWQPPLER---AS-LIQYYLIKYRTDG  383 (460)
Q Consensus       316 ~~~~~a~n~~G~~~~s~~~~~~~~-~~~P~~p~~~~--~~~~~-----~~v~l~W~~~~~~---~~-~i~~y~i~~~~~~  383 (460)
                      .|++.| | .+   .+....+... ...|.||.++.  +...+     ..+.|+|++|...   ++ .+..|+|+|+..+
T Consensus       108 ~~~V~a-N-~~---~s~~~~~~~~~~v~p~pP~~l~~~~~~~s~~~~~~~l~lsW~~P~~~~~~~g~~~l~Yevry~~~~  182 (236)
T 1axi_B          108 CIKLTS-N-GG---TVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVN  182 (236)
T ss_dssp             EEEEEE-T-TE---EEEEEEEEGGGGBCCCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETT
T ss_pred             EEEEEE-C-Cc---cCCCeEeecccccccCCCcccEEEEEecccCCCCceEEEEECCCCCccccCCceeeEEEEEEEECC
Confidence            999999 9 22   3334444332 23589999995  44432     2499999998643   34 6899999999764


Q ss_pred             CeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCC--CCCCCceeEeecC
Q psy535          384 SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG--DGMLSNIVVVKTK  460 (460)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G--~s~~s~~~~~~T~  460 (460)
                      .                         ..|..+..  ...+++.|.+|.|++.|.|+|+|.+..|  +|+||.++.++|+
T Consensus       183 ~-------------------------~~w~~~~~--~~~~~~~l~~L~p~t~Y~vqVRa~~~~gg~ws~WS~~~~~~~p  234 (236)
T 1axi_B          183 E-------------------------TKWKMMDP--ILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLP  234 (236)
T ss_dssp             C-------------------------SSCEECCC--BSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCCCCEEECCC
T ss_pred             C-------------------------CceEEEec--cCCCEEEEeccCCCCEEEEEEEEEECCCCCcCCCCCCEEEECC
Confidence            2                         12322221  2457899999999999999999999999  9999999999875

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.69  E-value=9.5e-16  Score=127.92  Aligned_cols=171  Identities=9%  Similarity=0.080  Sum_probs=108.1

Q ss_pred             ceeeeecceeeEEEEEEEecCCC-CCeEEEeeCC--ee---cC------------ccccccEEEeec-----CeEEEeec
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKDK--RL---LE------------PYQTKDIVVMQN-----GSLLFTRV  119 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~---~~------------~~~~~~~~~~~~-----~~l~i~~~  119 (460)
                      |....+.+|++++|.|.+.+.+. ...+.|+|..  ..   +.            .....|+....+     .+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (223)
T 1dee_B            7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL   86 (223)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence            44567889999999999987652 3479999842  11   10            111245555432     37999999


Q ss_pred             CCCCCeEEEEEEEcCCC---Cc-ceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEE
Q psy535          120 NQNHQGRYTCTPYNAHG---TQ-GSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQ  190 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~~g---~~-~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~  190 (460)
                      +.+|+|.|+|.+.+..|   .. .....+.|.|.    .+|.+...+... .+..|+.++|.|.+.  ...|.+ .+.|+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~--g~~P~p~~v~W~  163 (223)
T 1dee_B           87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCE-NSNPSSTVAVGCLAQ--DFLPDSITFSWK  163 (223)
T ss_dssp             CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTT-CCCSSSEEEEEEEEE--EEBSSCCEEEEE
T ss_pred             CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCc-ccCCCCcEEEEEEEE--EEeCCCeEEEeE
Confidence            99999999999988653   11 11122345554    245444322112 356899999999983  333766 99999


Q ss_pred             cCCCccCCcc---------cEEEecceEEEccccc--eeceEEEEEEecccceeeee
Q psy535          191 RRDGVALPKN---------RVKIVGGNITIEGLRR--VDFGYYECVVSNEVATIVQA  236 (460)
Q Consensus       191 ~~~~~~~~~~---------~~~~~~~~l~i~~~~~--~~~g~y~C~a~n~~g~~~~~  236 (460)
                      +.++..+...         ..-.....|.|.....  .|.|.|+|.+.|..+.....
T Consensus       164 ~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~  220 (223)
T 1dee_B          164 YKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD  220 (223)
T ss_dssp             ETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred             ccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence            9444343220         0001123467766655  67899999999998876543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.69  E-value=3.6e-17  Score=135.59  Aligned_cols=130  Identities=18%  Similarity=0.183  Sum_probs=96.6

Q ss_pred             ccceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCC-CcceeeeEEEEe----cCCeeEEcceeeeecceeeEEEEEE
Q psy535            8 LETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIG-EPQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVVQCH   79 (460)
Q Consensus         8 ~~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~   79 (460)
                      ..+|+.+...   ++|.|.+++.+|+|.|+|.|.+..+ ......+.|.|.    .+|.+...+....+.+|+.++|.|.
T Consensus        55 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~  134 (211)
T 3tv3_L           55 VPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCL  134 (211)
T ss_dssp             SCTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEE
T ss_pred             CcCcEEEEccCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEE
Confidence            4578886554   3899999999999999999999877 233566788887    5777777665555557999999999


Q ss_pred             EecCCC-CCeEEEeeCCeecCcccc-ccEEEee------cCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           80 IKANPT-FQYVTWTKDKRLLEPYQT-KDIVVMQ------NGSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        80 ~~~~~~-~~~v~W~~~~~~~~~~~~-~~~~~~~------~~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      +.+.++ .+.+.|+++|..+..... .......      ...|.|.++..+|+|.|+|.|.|..+.
T Consensus       135 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~  200 (211)
T 3tv3_L          135 ISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST  200 (211)
T ss_dssp             EEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred             eeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCC
Confidence            988533 458999999998753110 1111111      135888888889999999999997654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.69  E-value=6e-17  Score=134.49  Aligned_cols=131  Identities=16%  Similarity=0.197  Sum_probs=95.9

Q ss_pred             ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE---ecCCeeEEcceeeeecceeeEEEEEEEe
Q psy535            8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV---EFPAKVTFTPTVQYLPFRLQGVVQCHIK   81 (460)
Q Consensus         8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~   81 (460)
                      .++|+.+...+   +|.|.+++.+|+|.|+|.|.+..+........|.|   ..+|.+...+.......|+.++|.|.+.
T Consensus        58 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~  137 (213)
T 3r06_A           58 VPSRFSGSGSGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVN  137 (213)
T ss_dssp             CCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEE
T ss_pred             CCCcEEEeccCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEe
Confidence            46788887543   89999999999999999999876544455677888   5667777666555556687899999998


Q ss_pred             cCCC-CCeEEEeeCCeecCccc--cccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           82 ANPT-FQYVTWTKDKRLLEPYQ--TKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        82 ~~~~-~~~v~W~~~~~~~~~~~--~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      +.++ ...++|+++|..+....  ........+      ..|.|.....+|+|.|+|.|.|.....
T Consensus       138 g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~  203 (213)
T 3r06_A          138 NFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA  203 (213)
T ss_dssp             EEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             eecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence            8654 34799999999886421  001111111      257788888889999999999976443

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.69  E-value=8.7e-16  Score=141.10  Aligned_cols=265  Identities=11%  Similarity=0.079  Sum_probs=160.1

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      +..+...|....+..|++++|.|.+..    +.|.|+++|..+...   + .....+.|.|.++...|+|.|.|.+.+  
T Consensus       203 ~t~i~v~P~~~~v~~Gs~vtl~C~a~~----~~I~W~~ng~~i~~~---r-i~~~~~~L~I~nl~~sd~g~y~~~C~~--  272 (488)
T 2q7n_A          203 NTETNVFPQDKVVLAGSNMTICCMSPT----KVLSGQIGNTLRPLI---H-LYGQTVAIHILNIPVSENSGTNIIFIT--  272 (488)
T ss_dssp             CSSCCEECTTCEEESSCCCEEEECCSS----CEEEEEETTEECCCE---E-CSSSCEEEECCSCCCCCSSCEEEEEEE--
T ss_pred             CCceEECCCCCEEcCCCCEEEEEECCC----CEEEEEECCEECchh---h-ccceEEEEEEeCCCcccCCcEEEEEEc--
Confidence            344556788888899999999999872    279999999887532   1 112234699999999999999887763  


Q ss_pred             CCcceeeEEEEEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-----CCCCeeE--EEcCCCcc-CCcccEE-Eec
Q psy535          136 GTQGSSGQMEVLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-----TQKPTIT--WQRRDGVA-LPKNRVK-IVG  206 (460)
Q Consensus       136 g~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-----~p~~~~~--W~~~~~~~-~~~~~~~-~~~  206 (460)
                      +..  .....+.+..||..   |... .......-.+.|.+.....     .+...+.  +...+... ....... ...
T Consensus       273 ~~~--i~~~~l~v~~pP~~---P~nl-~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~~~~~~~~  346 (488)
T 2q7n_A          273 DDD--VYGTVVFAGYPPDV---PQKL-SCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNET  346 (488)
T ss_dssp             SSC--EEEEEEEEECCCCC---CCSC-EEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECSSCCCSSC
T ss_pred             CCe--EEEEEEEeeCCCCC---Cccc-EEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCccccccCCce
Confidence            221  22556667777753   2222 1111122345555531111     1111222  21111100 0000000 001


Q ss_pred             ceEEEccccceeceEEEEEEecccceeeeeeEEEEe---cCCCCCCCceeee-eecceEEEEeecCCCCCCCceeeEEEE
Q psy535          207 GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE---GTQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIW  282 (460)
Q Consensus       207 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~---~~~p~~p~~~~~~-~~~~~~~l~w~~~~~~~~~~~~~~~~~  282 (460)
                      ....+........+.|++.|.|..|....  .+.+.   ..+|.+|.++... .....+.|+|.++...+. ....|.+.
T Consensus       347 ~~ct~~l~~~~t~Y~f~V~A~N~~G~~~S--~~~~~~~~~v~P~PP~nl~v~~~s~~sl~LsW~pP~~~~g-~~l~YeV~  423 (488)
T 2q7n_A          347 YRLGVQMHPGQEIHNFTLTGRNPLGQAQS--AVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTK-INLLCQIE  423 (488)
T ss_dssp             EEEEEECCSSCCCCEEEEEEEETTEEEEE--EEECCGGGTBCCCCCEEEEEEECSTTCEEEEEEEEEECSS-SEEEEEEE
T ss_pred             EEEEEcCCCCccEEEEEEEEEeCCCCccc--eEEEEecCCCCCCCCeEEEEEecCCCEEEEEEeCCCCCCC-cceEEEEE
Confidence            12333333224678899999999998544  33332   2367888887754 356799999998754443 45799999


Q ss_pred             EEecCCCCeee-eeccCCCCceE--EEccCccCccEEEEEEEEcCCCC---CCCCCcEEEEccC
Q psy535          283 YREQGNKDWLP-IPVTPPGSTQI--TINRLTPATTYEFQVVGKNELGD---GMLSNIVVVKTKG  340 (460)
Q Consensus       283 ~~~~~~~~~~~-~~~~~~~~~~~--~i~~l~~~~~~~~~~~a~n~~G~---~~~s~~~~~~~~~  340 (460)
                      |+..+...|.. ..........+  .|.+|.+++.|.|+++|.| .|.   |.+|..+.++|.+
T Consensus       424 Yr~~~~~~w~~~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~~T~e  486 (488)
T 2q7n_A          424 ICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSRWSDEKRHLTTE  486 (488)
T ss_dssp             EBCTTSCCEEEEEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCCCCCCCCBCCCC
T ss_pred             EEECCCCCceEEEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCCCcCCEeEECCC
Confidence            99877666632 22221112345  9999999999999999999 776   5777777776653

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens}

Probab=99.68  E-value=2.4e-15  Score=122.48  Aligned_cols=178  Identities=18%  Similarity=0.190  Sum_probs=130.6

Q ss_pred             CCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCC
Q psy535          248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD  327 (460)
Q Consensus       248 ~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~  327 (460)
                      +|.++..........|.|.|+...++.  ..|.+.|+.-  ..|...-. ......+.|.+|.+...|.++|.|.|..|.
T Consensus         4 ~P~nv~~~s~n~~~iL~W~pp~~~~~~--v~Y~V~y~~~--~~w~~~c~-~~~~~~c~lt~l~~~~~Y~~rV~A~~~~~~   78 (201)
T 3lqm_A            4 PPENVRMNSVNFKNILQWESPAFAKGQ--LTFTAQYLSY--RIFQDKCM-QTTLTECDFSSLSKYGDHTLRVRAEFADEH   78 (201)
T ss_dssp             CCEEEEEEEETTEEEEEEECCCCSSSC--CEEEEEEEET--TEEEEEEE-EESSSEEECTTSCSSSCEEEEEEEEETTEE
T ss_pred             CCcccEEEEECCceEEEECCCCCCCCC--eEEEEEEEEC--CCcccCcC-ccCCCEEECCCCccCCCEEEEEEEecCCCc
Confidence            577888777778889999988765554  3599998875  35654222 125678899999999999999999999887


Q ss_pred             CCCCCcEEEEc-cCCCCCCCcceEEEeecceEEEEecCCCCCC-c---------cceEEEEEEEEcCCeeeeccccCCCC
Q psy535          328 GMLSNIVVVKT-KGPKPGPPRNVSVTEVNNGFVISWQPPLERA-S---------LIQYYLIKYRTDGSWKTLNKGQIRPE  396 (460)
Q Consensus       328 ~~~s~~~~~~~-~~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~-~---------~i~~y~i~~~~~~~~~~~~~~~~~~~  396 (460)
                      +.++.. .+.. ....++|| .+.+....++|.|.|.+|...+ +         .+..|+|.|...++-.          
T Consensus        79 S~~s~~-~f~~~~~t~~~PP-~v~~~~~~~si~v~w~~P~~~~~~~~~~~~~~~~~l~Y~v~y~~~~~~~----------  146 (201)
T 3lqm_A           79 SDWVQI-TFSPVDDTIIGPP-GMQVEVLADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDE----------  146 (201)
T ss_dssp             CCCEEE-EECHHHHSBCCCC-EEEEEEETTEEEEEEECCEEECSSCEEEHHHHCTTCEEEEEEEETTCCC----------
T ss_pred             Ccceee-eeeecccCeeCCC-EEEEEEeCCEEEEEEcCCCccCCCcccCHHHhCCceEEEEEEEECCCCc----------
Confidence            766642 3321 12346666 6777666679999999986432 3         4789999998765300          


Q ss_pred             cccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeec--CCCCCCCceeEeecC
Q psy535          397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE--LGDGMLSNIVVVKTK  460 (460)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~--~G~s~~s~~~~~~T~  460 (460)
                                    .+. +   ......+.|.+|.|++.|-|+|+|.+.  .|.|.+|+++-++|.
T Consensus       147 --------------~~~-~---~~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T~  194 (201)
T 3lqm_A          147 --------------KFQ-I---TPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTT  194 (201)
T ss_dssp             --------------CEE-E---CCSSSEEEECSCCTTCEEEEEEEEEETTTTEECCCCCCEEEECC
T ss_pred             --------------EEE-E---EecCceEEEecCCCCCcEEEEEEEEeccCCCCCCcCCCEeEEeC
Confidence                          000 0   124567899999999999999999997  688999999988873

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.68  E-value=2.6e-16  Score=134.51  Aligned_cols=142  Identities=14%  Similarity=0.273  Sum_probs=99.8

Q ss_pred             ccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCC---CcceeeeEEEEec----------------CCeeEEcc
Q psy535            8 LETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIG---EPQAAQAYLNVEF----------------PAKVTFTP   63 (460)
Q Consensus         8 ~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~----------------~p~~~~~~   63 (460)
                      ..+|+.+..++     +|.|.+++.+|+|.|+|.+.+..+   ......+.|.|..                ++.+...|
T Consensus        66 ~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p  145 (256)
T 3umt_A           66 FKGKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSP  145 (256)
T ss_dssp             GTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEEC
T ss_pred             ccceEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCC
Confidence            45789988654     499999999999999999998721   1124456788874                66777778


Q ss_pred             eeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC----------ccccccEEEeecC---eEEEeecCCCCCeEEE
Q psy535           64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE----------PYQTKDIVVMQNG---SLLFTRVNQNHQGRYT  128 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~----------~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~  128 (460)
                      ....+.+|++++|.|.+.+.+.+ .+.|+|.  +..+.          .....++.....+   +|.|.+++.+|+|.|+
T Consensus       146 ~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  224 (256)
T 3umt_A          146 SSLSASLGERVSITCRASQDIGS-NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYY  224 (256)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEE
T ss_pred             CeEEEECCCCEEEEEEEecCCCc-EEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEE
Confidence            88889999999999999997766 7999984  22111          0012333333222   4999999999999999


Q ss_pred             EEEEcCCCCcceeeEEEEEeeCC
Q psy535          129 CTPYNAHGTQGSSGQMEVLVRKP  151 (460)
Q Consensus       129 C~~~~~~g~~~~~~~~~v~v~~~  151 (460)
                      |.+.+..... ...-..|.|..+
T Consensus       225 C~~~~~~~~~-fg~gt~L~V~~~  246 (256)
T 3umt_A          225 CLQYASSPPT-FGGGTKLEIKRA  246 (256)
T ss_dssp             EEECSSSSCE-ECCCEEEEEC--
T ss_pred             EEEeeCCCcE-ECCCEEEEEECC
Confidence            9998854322 333445555543

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.68  E-value=1.3e-16  Score=121.17  Aligned_cols=110  Identities=26%  Similarity=0.370  Sum_probs=91.2

Q ss_pred             CCCCCCCcEEEEccCCCCC-CCcceEEEeec-ceEEEEecCCCC--CCccceEEEEEEEEcCCeeeeccccCCCCccccc
Q psy535          326 GDGMLSNIVVVKTKGPKPG-PPRNVSVTEVN-NGFVISWQPPLE--RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL  401 (460)
Q Consensus       326 G~~~~s~~~~~~~~~~~P~-~p~~~~~~~~~-~~v~l~W~~~~~--~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~  401 (460)
                      |.|.+|..+.+.+...+|. +|.++++...+ +++.|+|++|..  .++.+.+|+|+|+..+..                
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~----------------   64 (132)
T 1x5h_A            1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRK----------------   64 (132)
T ss_dssp             CCCCCCCCCCCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEE----------------
T ss_pred             CcCCCCCCEEEeCCCCCCCCCCeeeEEEeCCCCEEEEEEeCCCCcCCCceEeEEEEEEEECCCC----------------
Confidence            6678888999999888887 78999998776 699999999976  678999999999975531                


Q ss_pred             ccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                               .|..........+.+.|.+|.|++.|.|+|+|+|..|.|++|..+.++|.
T Consensus        65 ---------~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  114 (132)
T 1x5h_A           65 ---------SDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETF  114 (132)
T ss_dssp             ---------EEEECCBCCTTCCEEEEECCCSSCEEEEECEEEETTEEEEECCCEEEECC
T ss_pred             ---------CccEEEEeCCCccEEEeCCCCCCCEEEEEEEEEcCCccCCCCcCEEeEcC
Confidence                     12222223457789999999999999999999999999999999999884

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=3.4e-16  Score=116.21  Aligned_cols=109  Identities=22%  Similarity=0.359  Sum_probs=86.6

Q ss_pred             CCCCCCCcEEEEccCCCCC-CCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCccccccc
Q psy535          326 GDGMLSNIVVVKTKGPKPG-PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE  403 (460)
Q Consensus       326 G~~~~s~~~~~~~~~~~P~-~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (460)
                      |.|..|..+.+.+.+..|. +|.++++...+ +++.|+|++|..  +.|.+|.|+|+..+..                  
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~--g~i~~Y~v~~~~~~~~------------------   60 (119)
T 2ee2_A            1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLE--KIVESYQIRYWAAHDK------------------   60 (119)
T ss_dssp             CCCCCSSCCCCCCCSCCCCCCCCSCEEEEEETTEEEEECCCCSC--TTCCEEEEEEEESSSC------------------
T ss_pred             CCCCCCCCEEEECCCcCCCCCCCcEEEEEccCCEEEEEecCCCC--CccceEEEEEEECCCc------------------
Confidence            5677788888888877775 78899998876 699999999977  8899999999875420                  


Q ss_pred             ceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                           ...|..+. .....+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|+
T Consensus        61 -----~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  111 (119)
T 2ee2_A           61 -----EEAANRVQ-VTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTK  111 (119)
T ss_dssp             -----GGGCEEEE-EETTCSEEEECSCCTTCEEEEEEEEECSSSCCCCCCCEEEECC
T ss_pred             -----ccCcEEEE-cCCCEeEEEECCCCCCCEEEEEEEEEcCCccCCCCCCEEEECC
Confidence                 00011111 1235678999999999999999999999999999999999884

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.68  E-value=3.9e-16  Score=133.52  Aligned_cols=163  Identities=18%  Similarity=0.271  Sum_probs=104.9

Q ss_pred             cceeeeecceeeEEEEEEEecC--CCCCeEEEeeCC--eecC----------ccccccEEEeecC---eEEEeecCCCCC
Q psy535           62 TPTVQYLPFRLQGVVQCHIKAN--PTFQYVTWTKDK--RLLE----------PYQTKDIVVMQNG---SLLFTRVNQNHQ  124 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~--~~~~~v~W~~~~--~~~~----------~~~~~~~~~~~~~---~l~i~~~~~~d~  124 (460)
                      .|....+.+|++++|.|.+.+.  +. +.+.|+|..  ....          .....++.....+   +|.|.+++.+|+
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   86 (256)
T 3ux9_B            8 QPPSVSGAPGQRVTISCSGSSSNIGS-NYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDE   86 (256)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTT-SCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             cCCcEEEcCCCcEEEEEecCCCCCCC-ceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhC
Confidence            3445778899999999999876  44 479999842  1110          0012344433332   699999999999


Q ss_pred             eEEEEEEEcCCCCc-ceeeEEEEEeeCCCc--------------------eeeCCCcccccCCCCeEEEEeeeeccCCCC
Q psy535          125 GRYTCTPYNAHGTQ-GSSGQMEVLVRKPPA--------------------FTIKPEAMYQRKVGESVDMHCEAQEAEGTQ  183 (460)
Q Consensus       125 G~y~C~~~~~~g~~-~~~~~~~v~v~~~p~--------------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p  183 (460)
                      |.|+|.+.+..+.. .......|.|..++.                    ....+... .+..|+.++|.|.+   .+.+
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~---~~~~  162 (256)
T 3ux9_B           87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGG-LVQPGGSLRLSCAA---SGFT  162 (256)
T ss_dssp             EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCE-EECTTCCEEEEEEE---ESSC
T ss_pred             EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCe-EEcCCCeEEEEEEE---eCCc
Confidence            99999999865421 122334455554431                    11122222 47899999999999   5555


Q ss_pred             --CCeeEEEcCCCc-cC------------------CcccEEEe------cceEEEccccceeceEEEEEEecc
Q psy535          184 --KPTITWQRRDGV-AL------------------PKNRVKIV------GGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       184 --~~~~~W~~~~~~-~~------------------~~~~~~~~------~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                        .+.+.|++++.. .+                  ...++.+.      ...|.|.++..+|+|.|.|.+.|.
T Consensus       163 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  235 (256)
T 3ux9_B          163 FSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYID  235 (256)
T ss_dssp             GGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             ccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcC
Confidence              689999985311 11                  01133332      124999999999999999999986

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.68  E-value=4.1e-16  Score=124.37  Aligned_cols=127  Identities=20%  Similarity=0.218  Sum_probs=97.3

Q ss_pred             ceEEEeeCC--------eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEe
Q psy535           10 TRVVIKKDG--------TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIK   81 (460)
Q Consensus        10 ~r~~~~~~~--------~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~   81 (460)
                      ..+++..+|        .|.|.+++.+|+|.|+|.+.+...   +..+.|.|..++.+...+ ...+.+|+++.|.|.+.
T Consensus        35 ~~~~W~~~g~~~~~~~~~~~~~~~~~~d~G~Y~C~~~~~~~---s~~~~l~v~~~~~~~~~~-~~~~~~g~~~~l~C~~~  110 (170)
T 3ry4_A           35 DSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSL---SDPVHLTVLFEWLVLQTP-HLEFQEGETIMLRCHSW  110 (170)
T ss_dssp             SCEEEEETTEECTTCCSSEEEEECCGGGCEEEEEEETTSBC---CCCEEEEEECCSEEEECS-CSEECTTCCEEEEEEEG
T ss_pred             ceEEEEECCeEcccCccceEEEecccccCeEEEEEEeCCCc---eEeEEEEEECCceEecCC-CceeecCCeEEEEEECC
Confidence            456666664        588999999999999999997533   456888888776554444 45677899999999996


Q ss_pred             cCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535           82 ANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus        82 ~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      +.++.+.+.|+++|..+...       ..++.|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|
T Consensus       111 ~~~p~~~~~W~~~g~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~s~~~~l~V  169 (170)
T 3ry4_A          111 KDKPLVKVTFFQNGKSQKFS-------HLDPTFSIPQANHSHSGDYHCTGNIGYTLF-SSKPVTITV  169 (170)
T ss_dssp             GGCCEEEEEEEETTEEEEEE-------SSCCEEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEE
T ss_pred             CCCCCceEEEEECCeEcccc-------CCCCeEEEEeccccCCEEEEEEEEeCcCcc-ccccEEEEE
Confidence            65554589999999886421       234579999999999999999999988753 455555554

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.68  E-value=1.9e-17  Score=139.56  Aligned_cols=170  Identities=12%  Similarity=0.196  Sum_probs=93.8

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eec----------CccccccEEEe---ecCeEEEeecCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLL----------EPYQTKDIVVM---QNGSLLFTRVNQ  121 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~----------~~~~~~~~~~~---~~~~l~i~~~~~  121 (460)
                      +.+...|....+.+|++++|.|.+.+.+.+ .+.|+|++  ..+          ......++...   .+.+|.|.+++.
T Consensus        24 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  102 (233)
T 3bqu_C           24 TTVTQSPASLSMSIGEKVTIRCITSTDIDD-DMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS  102 (233)
T ss_dssp             CCEEEECSBC-------CCEEEEEEEEESS-CEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred             eeEEEcCCeEEEecCCCEEEEEecCCcCCC-eEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence            345556777788999999999999887655 69999853  211          00011222222   223799999999


Q ss_pred             CCCeEEEEEEEcCCCCcce-eeEEEEEee-CCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-eeEEEcCCCccC
Q psy535          122 NHQGRYTCTPYNAHGTQGS-SGQMEVLVR-KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TITWQRRDGVAL  197 (460)
Q Consensus       122 ~d~G~y~C~~~~~~g~~~~-~~~~~v~v~-~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~~W~~~~~~~~  197 (460)
                      +|+|.|+|.+.+..+.... ...+.|... .+|.+...+... .+..|+.++|.|.+   .+ .|.+ .+.|++++. .+
T Consensus       103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~---~g~~p~~~~v~W~k~g~-~~  177 (233)
T 3bqu_C          103 EDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSS-EQLTSGGASVVCFL---NNFYPKDINVKWKIDGS-ER  177 (233)
T ss_dssp             CCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCH-HHHHTTEEEEEEEE---EEEBSSCEEEEEEEC-----
T ss_pred             HHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCH-HhhcCCceEEEEEE---ccccCCceEEEEEECCe-eC
Confidence            9999999999887653211 123333322 266666544333 23468999999998   45 3443 799999544 33


Q ss_pred             Ccc-cEE-----------EecceEEEccccceeceEEEEEEecccce
Q psy535          198 PKN-RVK-----------IVGGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       198 ~~~-~~~-----------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      ... ...           .....|.|......|.|.|+|.|.|....
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          178 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             -CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             CCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            222 110           11235788888888999999999986543

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.68  E-value=1.5e-16  Score=135.89  Aligned_cols=131  Identities=20%  Similarity=0.245  Sum_probs=93.7

Q ss_pred             ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEe
Q psy535            8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIK   81 (460)
Q Consensus         8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~   81 (460)
                      ..+|+.+..++   +|.|.+++.+|+|.|+|.|.|..+........|.|..   +|.+...+.......|+.++|.|.+.
T Consensus       100 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~  179 (254)
T 2c1o_A          100 DPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLN  179 (254)
T ss_dssp             CCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEE
T ss_pred             ccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEe
Confidence            34788887654   8999999999999999999987654333345677753   56666544433334577999999998


Q ss_pred             cC-CCCCeEEEeeCCeecCccccccE--------EEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           82 AN-PTFQYVTWTKDKRLLEPYQTKDI--------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        82 ~~-~~~~~v~W~~~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      +. |++..++|+|+|..+........        .....+.|.|.++..+|+|.|+|.|.|.....
T Consensus       180 g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          180 NFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             EEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            84 44356999999988764200000        00112469999999999999999999976543

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.68  E-value=2.5e-16  Score=131.16  Aligned_cols=132  Identities=16%  Similarity=0.133  Sum_probs=98.3

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCee-EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCe
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKV-TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKR   96 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~   96 (460)
                      ++|.|.+++.+|+|.|+|.+.+..+........+.+..++.. ...+....+..++.+.+.|.+.+.|++ .|+|++++.
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p-~i~W~~~~~  157 (218)
T 4frw_A           79 GSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAP-SVTWDTEVK  157 (218)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCC-EEEEEESSC
T ss_pred             EEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCc-eEEEEECCc
Confidence            479999999999999999999877665455555566554433 334455667778899999999998876 899999988


Q ss_pred             ecCcccccc--EEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC
Q psy535           97 LLEPYQTKD--IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK  150 (460)
Q Consensus        97 ~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~  150 (460)
                      .+.......  ......+.|.|.++..+|+|.|+|.|.|..|....+..+.|.|..
T Consensus       158 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V~~  213 (218)
T 4frw_A          158 GTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHVSH  213 (218)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCEEC
T ss_pred             ccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEECc
Confidence            765321100  001112369999999999999999999999988777777777643

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.68  E-value=3.4e-16  Score=133.84  Aligned_cols=127  Identities=20%  Similarity=0.263  Sum_probs=93.1

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCC-------C-cceeeeEEEEecCC---------------ee
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIG-------E-PQAAQAYLNVEFPA---------------KV   59 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~-------~-~~~~~~~l~v~~~p---------------~~   59 (460)
                      ..+|+++..+     ++|.|.+++.+|+|.|+|.|.+..|       . .....+.|.|..++               .+
T Consensus        63 ~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~  142 (257)
T 1f3r_B           63 LKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKL  142 (257)
T ss_dssp             SSTTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECS
T ss_pred             cCCcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEE
Confidence            3679998763     3999999999999999999999854       1 11234678887543               23


Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecCc----------cccccEEEee---cCeEEEeecCCCCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLEP----------YQTKDIVVMQ---NGSLLFTRVNQNHQ  124 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~~----------~~~~~~~~~~---~~~l~i~~~~~~d~  124 (460)
                      ...|....+.+|++++|.|.+.+.+.+ .+.|+|  ++..+..          ....++....   ..+|.|.+++.+|+
T Consensus       143 ~~~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  221 (257)
T 1f3r_B          143 TQSPSLLSASVGDRVTLSCKGSQNINN-YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDV  221 (257)
T ss_dssp             CEETSEECCCTTCCEEEEEECSSCCBT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGC
T ss_pred             EccCCEEEEcCCCCEEEEEEECCcCCC-cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhC
Confidence            445667778899999999999988765 799999  5554310          0123333322   23699999999999


Q ss_pred             eEEEEEEEcCC
Q psy535          125 GRYTCTPYNAH  135 (460)
Q Consensus       125 G~y~C~~~~~~  135 (460)
                      |.|+|.|.|..
T Consensus       222 G~Y~C~a~n~~  232 (257)
T 1f3r_B          222 ATYFCYQYNNG  232 (257)
T ss_dssp             SEEEEEEESSS
T ss_pred             EEEEEEEeCCC
Confidence            99999999864

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.68  E-value=3.6e-15  Score=120.33  Aligned_cols=153  Identities=14%  Similarity=0.143  Sum_probs=103.2

Q ss_pred             eeecceeeEEEEEEEecCCCCC-eEEEeeCCeecCccccccEE-EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeE
Q psy535           66 QYLPFRLQGVVQCHIKANPTFQ-YVTWTKDKRLLEPYQTKDIV-VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQ  143 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~  143 (460)
                      ..+..|++++|.|.+ +.|.+. .|+|++.+..+     .+.. ......|.|.+++.+|+|.|.|.|.|..+.  ....
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l-----~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~--~~~~   88 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL-----GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT--FQHT   88 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT-----CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE--EEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc-----CcEEecCCccEEEECccCcccCceEEEEEEeCCCc--eEEE
Confidence            577889999999999 776543 79999965444     1222 233457999999999999999999997765  4566


Q ss_pred             EEEEeeCCCceee-CCCcccccCCCCeEEEEeeeeccCCCCC----CeeEEEcCCCccCCcccE---EE----------e
Q psy535          144 MEVLVRKPPAFTI-KPEAMYQRKVGESVDMHCEAQEAEGTQK----PTITWQRRDGVALPKNRV---KI----------V  205 (460)
Q Consensus       144 ~~v~v~~~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~p~----~~~~W~~~~~~~~~~~~~---~~----------~  205 (460)
                      +.|.|..+|.... .+.   ....|+.+ |.|.+.  ...|.    +++.|+++ +..+.....   ..          .
T Consensus        89 ~~ltV~~~P~~~~i~~~---~~~~g~~~-l~C~a~--g~~P~~~~~lti~Wlk~-~~~L~~~~~~~~~~~~~~~~~~~~~  161 (210)
T 1gsm_A           89 VQLLVYAFPNQLTVSPA---ALVPGDPE-VACTAH--KVTPVDPNALSFSLLVG-GQELEGAQALGPEVQEEEEEPQGDE  161 (210)
T ss_dssp             EEEEEEBCCSEEEEESS---SBCTTCCE-EEEEEE--EEBCCCTTTEEEEEEET-TEECTTCEECCCEEEECTTCCSSCC
T ss_pred             EEEEEEecCCCcEEccc---eEEeCCce-EEEEeC--CCCCCCCCCcEEEEEEC-CEEcccccccccceecccccccCCc
Confidence            7777788886544 332   34567777 999994  23453    58999994 444433221   11          0


Q ss_pred             cc------eEEEccccceeceEEEEEEeccccee
Q psy535          206 GG------NITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       206 ~~------~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      ..      ++.+......+.+.|+|.|.+.+-..
T Consensus       162 ~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~  195 (210)
T 1gsm_A          162 DVLFRVTERWRLPPLGTPVPPALYCQATMRLPGL  195 (210)
T ss_dssp             CCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTE
T ss_pred             ceEEEEEEEEeecCCcccCCceEEEEEEeeCCCC
Confidence            11      23333555566689999999876443

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.67  E-value=2.3e-15  Score=125.33  Aligned_cols=167  Identities=11%  Similarity=0.180  Sum_probs=109.0

Q ss_pred             cceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--ee---cC------------ccccccEEEeec-----CeEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RL---LE------------PYQTKDIVVMQN-----GSLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~---~~------------~~~~~~~~~~~~-----~~l~i~~  118 (460)
                      .|....+.+|++++|.|.+.+.+ ....+.|+|..  ..   +.            .....++....+     .+|.|.+
T Consensus         6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (220)
T 2fbj_H            6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK   85 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred             cCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECC
Confidence            34457788999999999998765 13479999842  21   10            011245555432     3799999


Q ss_pred             cCCCCCeEEEEEEEcCCCCc-ceeeEEEEEeeC----CCceeeCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEEc
Q psy535          119 VNQNHQGRYTCTPYNAHGTQ-GSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQR  191 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~g~~-~~~~~~~v~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~~  191 (460)
                      ++.+|+|.|.|.+.+..+.. .......|.|..    +|.+...+ .. .+..|+.++|.|.+.  ...|.  +.+.|++
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~-~~~~g~~v~L~C~~~--g~~P~~~~~v~W~~  161 (220)
T 2fbj_H           86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LP-PALSSDPVIIGCLIH--DYFPSGTMNVTWGK  161 (220)
T ss_dssp             CCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CC-SSSCCSSEEEEEEEE--EEBSCCCEEEEESC
T ss_pred             CChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cc-cccCCCcEEEEEEEE--eEECCCcEEEEEec
Confidence            99999999999999865421 111223445542    45555444 22 467899999999984  23365  7999999


Q ss_pred             CCCccCC---c-------ccEEEecceEEEccccceeceEEEEEEecccceee
Q psy535          192 RDGVALP---K-------NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV  234 (460)
Q Consensus       192 ~~~~~~~---~-------~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  234 (460)
                      ++.. +.   .       ..+. ....|.|......|.|.|+|.+.|..+...
T Consensus       162 ~~~~-~~~~~~~~~~~~~g~~~-~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          162 SGKD-ITTVNFPPALASGGRYT-MSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CCSS-CEEEECCCEECSSSCEE-EEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CCEe-cceEecCceECCCCCEE-EEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            5543 21   0       0111 122477887887889999999999887643

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.67  E-value=6.9e-16  Score=126.74  Aligned_cols=125  Identities=15%  Similarity=0.206  Sum_probs=87.2

Q ss_pred             ccceEEEe--eCCeEEEeecCCCCCeeEEEEEEeCCCCcc----eeeeEEEEecC---CeeEEcceeeeecceeeEEEEE
Q psy535            8 LETRVVIK--KDGTLVINPVGSDDSGLYMCEVSNGIGEPQ----AAQAYLNVEFP---AKVTFTPTVQYLPFRLQGVVQC   78 (460)
Q Consensus         8 ~~~r~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C   78 (460)
                      ..+|..+.  .+++|.|.+++.+|+|.|+|.|.+..|...    ...+.|.|..+   |.+...    ....|+.++|.|
T Consensus        53 ~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C  128 (201)
T 1dr9_A           53 YKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIIC  128 (201)
T ss_dssp             HHTTEEEESTTTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEE
T ss_pred             ccceeEEccCCCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEE
Confidence            34566553  346999999999999999999999876543    34677777654   332221    124578899999


Q ss_pred             EEe-cCCCCCeEEEeeCCeecCccccccEEEeec-CeEE---EeecCCCCCeEEEEEEEcCCCCc
Q psy535           79 HIK-ANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-GSLL---FTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        79 ~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~l~---i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      .+. +.|.+ .|+|+++|..+... ........+ +.+.   +..+..+|+|.|+|.|.|..|..
T Consensus       129 ~~~~g~P~p-~i~W~k~g~~l~~~-~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~  191 (201)
T 1dr9_A          129 STSGGFPEP-HLSWLENGEELNAI-NTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRV  191 (201)
T ss_dssp             EEEEESSCE-EEEEEESSCEECCS-EEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCE
T ss_pred             ecCCccCCC-EEEEEECCEECccc-cceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCccee
Confidence            995 77766 89999999988642 222222223 3222   24566789999999999988774

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.67  E-value=5.6e-16  Score=113.96  Aligned_cols=106  Identities=25%  Similarity=0.349  Sum_probs=84.5

Q ss_pred             CCCCCCCcEEEEccCCCCC-CCcceEEEeecceEEEEecCC--CCCCccceEEEEEEEEcCCeeeeccccCCCCcccccc
Q psy535          326 GDGMLSNIVVVKTKGPKPG-PPRNVSVTEVNNGFVISWQPP--LERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG  402 (460)
Q Consensus       326 G~~~~s~~~~~~~~~~~P~-~p~~~~~~~~~~~v~l~W~~~--~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~  402 (460)
                      |.|..|..+.+.+.+.+|. +|.++++....++|.|+|++|  ...++.|.+|+|+|+..+...                
T Consensus         1 G~G~~S~~v~~~T~e~~P~~~P~~v~~~~~~~si~l~W~~p~~~~~ng~i~gY~v~y~~~~~~~----------------   64 (117)
T 1wj3_A            1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNN----------------   64 (117)
T ss_dssp             CCCCCCCCCCCCCSCCCCCCCCCSCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSS----------------
T ss_pred             CcCCCCCCEEEEecCCCCCCCCccEEEEEeCCEEEEEEcCCCccccCCceeEEEEEEEECCCCC----------------
Confidence            5677888889999988886 788888877447999999999  457899999999999765310                


Q ss_pred             cceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                               +..+   ....+.+.+. |.+++.|.|+|+|+|.+|.|++|+.+.++|.
T Consensus        65 ---------~~~~---~~~~~~~~~~-L~~~t~Y~~~V~A~n~~G~Gp~S~~v~~~T~  109 (117)
T 1wj3_A           65 ---------VQVL---NTNKTSAELV-LPIKEDYIIEVKATTDGGDGTSSEQIRIPRI  109 (117)
T ss_dssp             ---------CEEE---EESSSEEEEE-CCCSSCEEEEEEEEESSCCCCBCCCEEECCC
T ss_pred             ---------CeEE---eCCCcEEEEE-CCCCCEEEEEEEEECCCccCCCCCCEEEEcC
Confidence                     0000   0234567777 9999999999999999999999999999884

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.67  E-value=9.3e-17  Score=136.96  Aligned_cols=129  Identities=19%  Similarity=0.213  Sum_probs=92.6

Q ss_pred             cceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEec
Q psy535            9 ETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKA   82 (460)
Q Consensus         9 ~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~   82 (460)
                      .+|+.+..++   +|.|.+++.+|+|.|+|.+.+..+........|.|..   +|.+...+....+.+|+.++|.|.+.+
T Consensus        97 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g  176 (252)
T 3bkj_L           97 PDRFSGSGSGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNN  176 (252)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEE
T ss_pred             CCceEEEccCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEee
Confidence            5788887654   8999999999999999999987654323445777764   566665444333447889999999988


Q ss_pred             CCCC-CeEEEeeCCeecCcc--ccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           83 NPTF-QYVTWTKDKRLLEPY--QTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        83 ~~~~-~~v~W~~~~~~~~~~--~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      .+++ ..|+|+|+|..+...  .........+      ..|.|.++..+|+|.|+|.|.|....
T Consensus       177 ~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          177 FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             EBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             EeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            5443 479999999987532  0001111112      24899999999999999999987654

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.67  E-value=1e-15  Score=131.74  Aligned_cols=169  Identities=17%  Similarity=0.234  Sum_probs=108.8

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCC----CCeEEEeeCC--eecC----------ccccccEEEeec---CeEEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPT----FQYVTWTKDK--RLLE----------PYQTKDIVVMQN---GSLLF  116 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~~v~W~~~~--~~~~----------~~~~~~~~~~~~---~~l~i  116 (460)
                      .+.+...|....+.+|++++|.|.+.+.+.    ...+.|+|..  ..+.          .....++.....   .+|.|
T Consensus        15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I   94 (268)
T 1x9q_A           15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI   94 (268)
T ss_dssp             CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence            445666777888999999999999988762    3479999853  2110          001234444322   36999


Q ss_pred             eecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCCc-----------------------eeeCCCcccccCCCCeEEEE
Q psy535          117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPA-----------------------FTIKPEAMYQRKVGESVDMH  173 (460)
Q Consensus       117 ~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~-----------------------~~~~~~~~~~~~~g~~~~l~  173 (460)
                      .+++.+|+|.|+|.+.+..+.. ......|.|..++.                       ....+... .+..|+.++|.
T Consensus        95 ~~v~~~DsG~Y~C~~~~~~~~~-~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~-~v~~G~~v~L~  172 (268)
T 1x9q_A           95 NRVEAEDLGVYFCSQSTHVPWT-FGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGG-LVQPGGAMKLS  172 (268)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCE-ECCCEEEC------------------------CGGGCEEEEECCE-EECTTCCEEEE
T ss_pred             CCCChhHCEEEEEEEecCCCce-EcCCEEEEEccCccCCCccccccccccccccccccceEEECCCce-EecCCCcEEEE
Confidence            9999999999999998865421 11122333332211                       11222333 67899999999


Q ss_pred             eeeeccCCCC--CCeeEEEcCC-Ccc--------------------CCcccEEEe------cceEEEccccceeceEEEE
Q psy535          174 CEAQEAEGTQ--KPTITWQRRD-GVA--------------------LPKNRVKIV------GGNITIEGLRRVDFGYYEC  224 (460)
Q Consensus       174 C~~~~~~~~p--~~~~~W~~~~-~~~--------------------~~~~~~~~~------~~~l~i~~~~~~~~g~y~C  224 (460)
                      |.+   .+.+  .+.+.|++.. +..                    ....++...      ...|.|.++..+|+|.|.|
T Consensus       173 C~~---~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C  249 (268)
T 1x9q_A          173 CVT---SGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYC  249 (268)
T ss_dssp             EEE---ESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             EEe---cCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEE
Confidence            998   4554  3789998742 111                    012344432      1369999999999999999


Q ss_pred             EEecc
Q psy535          225 VVSNE  229 (460)
Q Consensus       225 ~a~n~  229 (460)
                      .+.+.
T Consensus       250 ~a~~~  254 (268)
T 1x9q_A          250 TGASY  254 (268)
T ss_dssp             EEEET
T ss_pred             EEccC
Confidence            99874

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.67  E-value=1.6e-16  Score=132.73  Aligned_cols=131  Identities=16%  Similarity=0.156  Sum_probs=92.8

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC----cceeeeEEEEec----CCeeEEcceeeeecceeeE
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE----PQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQG   74 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~   74 (460)
                      ..+|+++..+     ++|.|.+++.+|+|.|+|.+.+..+.    .....+.|.|..    +|.+...+....+.+|+.+
T Consensus        66 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v  145 (222)
T 1q9r_B           66 VKGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMV  145 (222)
T ss_dssp             TBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEE
T ss_pred             cCCceEEEEECCCCeEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcE
Confidence            3579999764     38999999999999999999987641    123456777764    4555444433345679999


Q ss_pred             EEEEEEecC-CCCCeEEEeeCCeecCccccccE----EEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535           75 VVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDI----VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        75 ~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                      +|.|.+.+. |.+..|+|+++|..+........    .....+.|.|.++..+| |.|+|.|.|..|...
T Consensus       146 ~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~  214 (222)
T 1q9r_B          146 TLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK  214 (222)
T ss_dssp             EEEEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred             EEEEEEccEECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCc
Confidence            999999986 55448999999887642111110    11112368999999899 999999999887653

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.67  E-value=2.2e-16  Score=132.93  Aligned_cols=128  Identities=16%  Similarity=0.125  Sum_probs=94.0

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCC-cceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGE-PQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK   93 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~   93 (460)
                      +.|.|.+++.+|+|.|+|.+.+..+. ..+..+.|.|..   +|.+...|. ..+.+|++++|.|.+.+.+  ..+.|+|
T Consensus        60 ~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~~~--~~~~w~k  136 (242)
T 1p6f_A           60 VKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYCRLDTAT--SMFLLLK  136 (242)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEESC-SEEETTCEEEEEEECTTSC--SEEEEEE
T ss_pred             eEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccCC-CccCCCCcEEEEEecCCCC--CEEEEEE
Confidence            47999999999999999999886432 235667888864   456665553 4578899999999987653  3799999


Q ss_pred             CCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC-CCcceeeEEEEEeeCC
Q psy535           94 DKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH-GTQGSSGQMEVLVRKP  151 (460)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-g~~~~~~~~~v~v~~~  151 (460)
                      +|..+..   .......++.|.|.+++.+|+|.|+|.+.|.. .....+..+.|.|..+
T Consensus       137 ~g~~~~~---~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~  192 (242)
T 1p6f_A          137 EGRSSHV---QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD  192 (242)
T ss_dssp             CSSSCEE---EEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred             CCCccCc---cccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence            9986642   11112234579999999999999999998864 2233566777777754

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.67  E-value=3.3e-16  Score=111.71  Aligned_cols=91  Identities=20%  Similarity=0.326  Sum_probs=74.5

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~  131 (460)
                      .||.|...|....+.+|+++.|.|.+.|.|.+ .|+|+|+|..+......++.+...+   +|.|.++..+|+|.|+|.|
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTP-EVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL   82 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEEEESCC-EEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCC-EEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence            36777778888899999999999999998876 7999999999976555566555443   6999999999999999999


Q ss_pred             EcCCCCcceeeEEEE
Q psy535          132 YNAHGTQGSSGQMEV  146 (460)
Q Consensus       132 ~~~~g~~~~~~~~~v  146 (460)
                      .|..|....+..+.|
T Consensus        83 ~N~~G~~~~~~~l~V   97 (100)
T 3knb_A           83 GNEFGSDSATVNIHI   97 (100)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEE
Confidence            999998655444433

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.67  E-value=1.6e-15  Score=128.33  Aligned_cols=180  Identities=12%  Similarity=0.199  Sum_probs=111.0

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC--------------cc-ccccEEEee-----cCeE
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE--------------PY-QTKDIVVMQ-----NGSL  114 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~--------------~~-~~~~~~~~~-----~~~l  114 (460)
                      .+...|....+.+|++++|.|.+.+.. ....+.|+|..  ..+.              .. ...++....     +.+|
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   82 (242)
T 1hxm_B            3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL   82 (242)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred             ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence            344567777889999999999998751 23479999842  2110              00 234554442     2369


Q ss_pred             EEeecCCCCCeEEEEEEEcCCC-C----cceeeEEEEEeeC-------CCceeeCCCcccccCCCCeEEEEeeeeccCCC
Q psy535          115 LFTRVNQNHQGRYTCTPYNAHG-T----QGSSGQMEVLVRK-------PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT  182 (460)
Q Consensus       115 ~i~~~~~~d~G~y~C~~~~~~g-~----~~~~~~~~v~v~~-------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~  182 (460)
                      .|.+++.+|+|.|+|.+.+... .    ........|.|..       +|...+.......+..|+.++|.|.+.  ...
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~--g~~  160 (242)
T 1hxm_B           83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLE--KFF  160 (242)
T ss_dssp             EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEE--EES
T ss_pred             EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEe--eEE
Confidence            9999999999999999987531 1    1111223444543       343333321222456799999999983  233


Q ss_pred             CC-CeeEEEcCCCccCCcc---cEEEe------cceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          183 QK-PTITWQRRDGVALPKN---RVKIV------GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       183 p~-~~~~W~~~~~~~~~~~---~~~~~------~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      |. +.+.|++++...+...   .....      ...|.|..... + |.|+|.+.|..+.......+.+
T Consensus       161 P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          161 PDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             SCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             CCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            64 7999999665233211   11111      23577776664 4 9999999998877655555544

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.67  E-value=1.4e-16  Score=131.43  Aligned_cols=158  Identities=15%  Similarity=0.174  Sum_probs=97.8

Q ss_pred             cceeeEEEEEEEecCCC---CCeEEEeeCCeecCccccccEEEeecCeEEEee---cCCCC---CeEEEEEEEcCCCCcc
Q psy535           69 PFRLQGVVQCHIKANPT---FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTR---VNQNH---QGRYTCTPYNAHGTQG  139 (460)
Q Consensus        69 ~~g~~~~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~~d---~G~y~C~~~~~~g~~~  139 (460)
                      .+|++++|.|.+.+.++   ...|+|+|++.++............++.|.+..   +...|   +|.|+|.|.|..+...
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            68999999999998753   348999999987753221122233445555543   33444   9999999999877643


Q ss_pred             eeeEEEE--EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCC-CeeEEEcCCCccCCccc---EE-Eecce---
Q psy535          140 SSGQMEV--LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQK-PTITWQRRDGVALPKNR---VK-IVGGN---  208 (460)
Q Consensus       140 ~~~~~~v--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~-~~~~W~~~~~~~~~~~~---~~-~~~~~---  208 (460)
                      ....+.+  .+..+|.+.+.+.....+ .|..++|.|.+   .| .|. +.+.|++++. .+....   .. ..+++   
T Consensus        96 ~~~~v~~~~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~---~g~~P~~~~v~W~k~g~-~~~~~~~~~~~~~~~gt~~~  170 (207)
T 1l6x_A           96 IEKTISKAKGQPREPQVYTLPPSRDEL-TKNQVSLTCLV---KGFYPSDIAVEWESNGQ-PENNYKTTPPVLDSDGSFFL  170 (207)
T ss_dssp             EEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEE---EEEBSSCCEEEEEETTE-EECCEEECCCEECTTSCEEE
T ss_pred             eEEEeccCCCCCcCCEEEEECCChHHh-cCCcEEEEEEE---eCeECCCeEEEEEECCe-eccCccccCceECCCCCEEE
Confidence            3333332  345677766554443223 45569999999   45 454 4999999543 332211   11 12233   


Q ss_pred             ---EEEccccceeceEEEEEEecccc
Q psy535          209 ---ITIEGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       209 ---l~i~~~~~~~~g~y~C~a~n~~g  231 (460)
                         |.+......|.|.|+|.|.|...
T Consensus       171 ~s~l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          171 YSKLTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             EEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEEEEECHHHcCCCCEEEEEEEcCCc
Confidence               33333334568999999998754

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.67  E-value=9.4e-17  Score=133.82  Aligned_cols=131  Identities=16%  Similarity=0.196  Sum_probs=90.6

Q ss_pred             ccceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCC----CcceeeeEEEEe----cCCeeEEcceeeeecceeeEEE
Q psy535            8 LETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIG----EPQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVV   76 (460)
Q Consensus         8 ~~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l   76 (460)
                      ..+|+.+...   ++|.|.+++.+|+|.|+|.|.+..|    ......+.|.|.    .+|.+...+.......|+.++|
T Consensus        62 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L  141 (218)
T 3s96_B           62 IPDRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATL  141 (218)
T ss_dssp             CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEE
T ss_pred             cccceEEecCCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEE
Confidence            3468887653   3799999999999999999999775    122445788887    4566665554444556788999


Q ss_pred             EEEEecC-CCCCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           77 QCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        77 ~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      .|.+.+. |++..|+|+++|..+............+      +.|.|.....+|+|.|+|.|.|..+..
T Consensus       142 ~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~  210 (218)
T 3s96_B          142 VCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTV  210 (218)
T ss_dssp             EEEEEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEE
T ss_pred             EEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcc
Confidence            9999984 4443899999999885421111111112      247788888889999999999977543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.67  E-value=7.5e-16  Score=133.13  Aligned_cols=127  Identities=12%  Similarity=0.192  Sum_probs=91.6

Q ss_pred             ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC-------------e-eEEcceeeeecc
Q psy535            8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA-------------K-VTFTPTVQYLPF   70 (460)
Q Consensus         8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-------------~-~~~~~~~~~~~~   70 (460)
                      .++|+.+..++   +|.|.+++.+|+|.|+|.|.|..+........|.|..++             . +...|....+.+
T Consensus        69 ~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~  148 (276)
T 3auv_A           69 VPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQP  148 (276)
T ss_dssp             CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECT
T ss_pred             CCCCEEEeccCCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecC
Confidence            35788887654   899999999999999999999765433445677776543             2 234456678889


Q ss_pred             eeeEEEEEEEecCCC-CCeEEEeeCC--eecC---------------ccccccEEEeec-----CeEEEeecCCCCCeEE
Q psy535           71 RLQGVVQCHIKANPT-FQYVTWTKDK--RLLE---------------PYQTKDIVVMQN-----GSLLFTRVNQNHQGRY  127 (460)
Q Consensus        71 g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~~---------------~~~~~~~~~~~~-----~~l~i~~~~~~d~G~y  127 (460)
                      |++++|.|.+.+.++ .+.+.|+|++  ..+.               .....++....+     ..|.|.+++.+|+|.|
T Consensus       149 G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y  228 (276)
T 3auv_A          149 GGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVY  228 (276)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEE
Confidence            999999999998763 3589999963  2110               111235544433     2799999999999999


Q ss_pred             EEEEEcC
Q psy535          128 TCTPYNA  134 (460)
Q Consensus       128 ~C~~~~~  134 (460)
                      +|.|.|.
T Consensus       229 ~C~a~n~  235 (276)
T 3auv_A          229 YCARFVF  235 (276)
T ss_dssp             EEEEECS
T ss_pred             EEEEEcC
Confidence            9999997

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.67  E-value=3.6e-16  Score=112.94  Aligned_cols=93  Identities=24%  Similarity=0.379  Sum_probs=74.3

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~  131 (460)
                      .||.|...|....+.+|+++.|.|.+.|.|.+ .|+|+|+|..+..  ..++.+..++   +|.|.++..+|+|.|+|.|
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p-~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   88 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPP-VVVWEKGGQQLAA--SERLSFPADGAEHGLLLTAALPTDAGVYVCRA   88 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCC--CSSEECCEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCC-EEEEEECcccccc--eeeEEEeecCceEEEEEecCChhhCEEEEEEE
Confidence            46788888888999999999999999998876 7999999999874  3444444333   6999999999999999999


Q ss_pred             EcCCCCcceeeEEEEEeeCCC
Q psy535          132 YNAHGTQGSSGQMEVLVRKPP  152 (460)
Q Consensus       132 ~~~~g~~~~~~~~~v~v~~~p  152 (460)
                      .|..|....  .+.|.|..+|
T Consensus        89 ~N~~G~~~~--~~~l~V~~pP  107 (107)
T 3knb_B           89 RNAAGEAYA--AAAVTVLEPP  107 (107)
T ss_dssp             EETTEEEEE--EEEEEEEC--
T ss_pred             EECCCEEEE--EEEEEEEcCC
Confidence            999997654  4555566554

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=6.1e-16  Score=112.71  Aligned_cols=98  Identities=18%  Similarity=0.326  Sum_probs=78.5

Q ss_pred             ccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeec
Q psy535          338 TKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP  416 (460)
Q Consensus       338 ~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (460)
                      +...+|.+|.++++...+ ++|.|+|++|...++.|.+|.|+|+..+..                      ....|..+.
T Consensus         3 T~~~~P~~p~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~----------------------~~~~~~~~~   60 (109)
T 2e7h_A            3 SGSSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAE----------------------GPSSVRFLK   60 (109)
T ss_dssp             SSCCSSCCCCCCEEEEEETTEEEEECCCCCCSSSCCCEEEEEEEETTCC----------------------STTTSEEEE
T ss_pred             CCCCCCCCCCccEEEecCCCEEEEEeCCCCCCCCcEeEEEEEEEECCCC----------------------CCceeEEEc
Confidence            445678899999998877 699999999987788999999999976520                      000111111


Q ss_pred             cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                         ...+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus        61 ---~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  101 (109)
T 2e7h_A           61 ---TSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQ  101 (109)
T ss_dssp             ---ESSSEEEEESCCTTSCEEEEEEEECSSCBCCCCSCEECCCC
T ss_pred             ---cCCCEEEECCCCCCCeEEEEEEEEeCCccCCCCCCEEEEcC
Confidence               24568999999999999999999999999999999999884

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.66  E-value=4.7e-16  Score=116.33  Aligned_cols=107  Identities=21%  Similarity=0.349  Sum_probs=87.5

Q ss_pred             cCCCCCCCCCcEEEEccCC------CCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCC
Q psy535          323 NELGDGMLSNIVVVKTKGP------KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPE  396 (460)
Q Consensus       323 n~~G~~~~s~~~~~~~~~~------~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~  396 (460)
                      +..|.|.+|..+.+++...      +|.+|.++++...++++.|+|++|...++.|.+|.|+|+. +..           
T Consensus         2 t~~G~g~~S~~~~~~T~~~~~~~~~~P~~P~~l~~~~~~~sv~l~W~~P~~~~g~i~~Y~v~y~~-~~~-----------   69 (126)
T 1x5i_A            2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYGI-GSP-----------   69 (126)
T ss_dssp             CSCCCCCCCCCCCSCCCCTTSBCSSCCCSCSEEEEEEETTEEEEEEECCSCTTBCCCEEEEEECS-SCG-----------
T ss_pred             CCCccCCCCCCEEeECccccCccCCCCCCCCeeEEEecCCEEEEEEcCCCCCCCCEeEEEEEEEc-CCC-----------
Confidence            3578888999999988886      8999999999988789999999998778899999999983 210           


Q ss_pred             cccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeE
Q psy535          397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV  456 (460)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~  456 (460)
                                  ...+.   ......++++|.+|.|++.|.|+|+|+|..|.|+++....
T Consensus        70 ------------~~~~~---~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~  114 (126)
T 1x5i_A           70 ------------HAQTI---KVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESA  114 (126)
T ss_dssp             ------------GGEEE---ECCTTCCEEEECSCCSSCEECCEEEEECSSCBCCCCCCCE
T ss_pred             ------------CceEE---EeCCCeeEEEEeCCCCCCEEEEEEEEEeCCccCcceeeEE
Confidence                        00111   1235678999999999999999999999999999887543

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.66  E-value=2.7e-15  Score=130.60  Aligned_cols=165  Identities=16%  Similarity=0.227  Sum_probs=108.6

Q ss_pred             cceeeeecceeeEEEEEEEecCCC-CCeEEEeeCC--eecC---------------ccccccEEEee-----cCeEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKDK--RLLE---------------PYQTKDIVVMQ-----NGSLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~~---------------~~~~~~~~~~~-----~~~l~i~~  118 (460)
                      .|....+.+|++++|.|.+.+.+. .+.+.|+|..  ..+.               .....++....     ..+|.|.+
T Consensus        28 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  107 (291)
T 2gki_A           28 QSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS  107 (291)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred             cCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence            455677889999999999987652 3479999952  1110               00123333332     23699999


Q ss_pred             cCCCCCeEEEEEEEcCC-CCc--ceeeEEEEEeeC----------------CCceeeCCCcccccCCCCeEEEEeeeecc
Q psy535          119 VNQNHQGRYTCTPYNAH-GTQ--GSSGQMEVLVRK----------------PPAFTIKPEAMYQRKVGESVDMHCEAQEA  179 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~-g~~--~~~~~~~v~v~~----------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~  179 (460)
                      ++.+|+|.|+|.+.+.. |..  .......|.|..                ++.+...|... .+..|+.++|.|.+   
T Consensus       108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~-~v~~G~~v~L~C~~---  183 (291)
T 2gki_A          108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSL-AVSAGEKVTMSCKS---  183 (291)
T ss_dssp             CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEE-EEETTSCEEEEEEE---
T ss_pred             CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEE-EEcCCCcEEEEEEc---
Confidence            99999999999998864 211  111223455544                23344444443 67899999999998   


Q ss_pred             CCCCCC------eeEEEcCC-CccCC-------------cccEEEe----cceEEEccccceeceEEEEEEeccc
Q psy535          180 EGTQKP------TITWQRRD-GVALP-------------KNRVKIV----GGNITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       180 ~~~p~~------~~~W~~~~-~~~~~-------------~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      .+.+.+      .+.|++++ +....             ..++...    ..+|.|.++..+|+|.|.|.+.|..
T Consensus       184 ~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          184 SQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            666665      89999853 11110             2233322    2369999999999999999999854

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.66  E-value=5e-14  Score=114.29  Aligned_cols=158  Identities=15%  Similarity=0.241  Sum_probs=113.2

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecCCC---CCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKANPT---FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      .+.+.|....+..|+.++|.|.+.+..+   +.+++|+|||.++..         ..+.|.|..+...|+|.|+|.+.+.
T Consensus         4 tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG---------aT~tLti~s~t~sdSG~YqCvVTDa   74 (304)
T 3shs_A            4 TVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN---------NTATLTVADATSENAGSYKVTVQDT   74 (304)
T ss_dssp             EEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC---------CSSEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC---------CcceEEeeeccccCCeEEEEEEEEC
Confidence            3456788888899999999999977643   347999999988752         2346899999999999999999998


Q ss_pred             CCCcceeeEEEEEeeCCCceeeC-CCcccccCCCCeEEEEeeeeccCCCC-----CCeeEEEcCCCccCCcccEEEecce
Q psy535          135 HGTQGSSGQMEVLVRKPPAFTIK-PEAMYQRKVGESVDMHCEAQEAEGTQ-----KPTITWQRRDGVALPKNRVKIVGGN  208 (460)
Q Consensus       135 ~g~~~~~~~~~v~v~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~p-----~~~~~W~~~~~~~~~~~~~~~~~~~  208 (460)
                      .|....+..+.|.....+.+.+. |... .+..+..+.|.+.+....|.+     ...+.|++++. .+.      ....
T Consensus        75 ~Gcs~tSs~VtVT~~a~l~i~it~P~s~-~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt-~Is------gAq~  146 (304)
T 3shs_A           75 DTMTSVESEVFLMEEAELIVNITEPQHF-YVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGED-VID------TTQD  146 (304)
T ss_dssp             TTCCEEECCCEEECBCCEEEEESSCSEE-EECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTE-EEE------SSSE
T ss_pred             CCCeeeeeeEEEeccCceeEEecCCCce-eccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCe-Ecc------Cccc
Confidence            88766665555554333333332 3333 456677888888762224555     46999999543 221      2235


Q ss_pred             EEEccccceeceEEEEEEecccce
Q psy535          209 ITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       209 l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      +.+......++|.|+|.+.|..+.
T Consensus       147 lT~sS~TateaG~YtV~VTn~~~~  170 (304)
T 3shs_A          147 ITIQEFTADKNGVYTVKVWGESED  170 (304)
T ss_dssp             EEECSCCGGGCEEEEEEEESSSGG
T ss_pred             cceeeEEecCCeEEEEEEEcCCCC
Confidence            677778888999999999998763

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.66  E-value=2.3e-16  Score=131.54  Aligned_cols=130  Identities=15%  Similarity=0.147  Sum_probs=89.8

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC---cceeeeEEEEecC----CeeEEcceeeeecceeeEE
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE---PQAAQAYLNVEFP----AKVTFTPTVQYLPFRLQGV   75 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~   75 (460)
                      ..+|+.+..+     ++|.|.+++.+|+|.|+|.|.+..+.   .....+.|.|...    |.+...+....+.+|+.++
T Consensus        64 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~  143 (219)
T 1c1e_H           64 FKGRFAFFLETSATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVT  143 (219)
T ss_dssp             GCSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEE
T ss_pred             cCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEE
Confidence            4579998763     49999999999999999999997632   1224567777652    5554444334466899999


Q ss_pred             EEEEEec-CCCCCeEEEeeCCeecCccccccEEE----eecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           76 VQCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVV----MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        76 l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      |.|.+.+ .|.+..|+|++++..+..........    ...+.|.|. ....|.|.|+|.|.|..+..
T Consensus       144 L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~-~~~~d~g~Y~C~a~n~~~~~  210 (219)
T 1c1e_H          144 LGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVP-SSPRPSETVTCNVAHPASST  210 (219)
T ss_dssp             EEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEE-SSSTTTSCCEEEEEEGGGTE
T ss_pred             EEEEcccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEe-cccCCCCEEEEEEEeCCCCc
Confidence            9999998 66554899999998753211111110    112358884 44446699999999977654

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.66  E-value=1e-15  Score=130.11  Aligned_cols=127  Identities=14%  Similarity=0.214  Sum_probs=93.2

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC-cceeeeEEEEecC---------------CeeEEcceee
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE-PQAAQAYLNVEFP---------------AKVTFTPTVQ   66 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~---------------p~~~~~~~~~   66 (460)
                      ..+|+.+..+     ++|.|.+++.+|+|.|+|.|.|..+. .....+.|.|..+               +.+...|...
T Consensus        66 ~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (247)
T 2ghw_B           66 VKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATL  145 (247)
T ss_dssp             TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEE
T ss_pred             ccCcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEE
Confidence            4579998764     38999999999999999999997322 1133457777643               3355567777


Q ss_pred             eecceeeEEEEEEEecCCCCCeEEEee--CCeecC----------ccccccEEEee---cCeEEEeecCCCCCeEEEEEE
Q psy535           67 YLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE----------PYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~----------~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~  131 (460)
                      .+.+|++++|.|.+.+.+.+ .+.|+|  ++..+.          .....++....   ..+|.|.+++.+|+|.|+|.|
T Consensus       146 ~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  224 (247)
T 2ghw_B          146 SLSPGERATLSCRASQSVRS-NLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQ  224 (247)
T ss_dssp             EECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEE
T ss_pred             EecCCCcEEEEEEeCCCccc-eEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEE
Confidence            88999999999999998766 799999  555431          01123333322   235999999999999999999


Q ss_pred             EcCC
Q psy535          132 YNAH  135 (460)
Q Consensus       132 ~~~~  135 (460)
                      .|..
T Consensus       225 ~~~~  228 (247)
T 2ghw_B          225 RSNW  228 (247)
T ss_dssp             CSSS
T ss_pred             ccCC
Confidence            8753

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.66  E-value=8.2e-16  Score=131.43  Aligned_cols=128  Identities=18%  Similarity=0.245  Sum_probs=93.3

Q ss_pred             ccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeC-----------CCCcceeeeEEEEec---------------C
Q psy535            8 LETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNG-----------IGEPQAAQAYLNVEF---------------P   56 (460)
Q Consensus         8 ~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~-----------~~~~~~~~~~l~v~~---------------~   56 (460)
                      ..+|+.+..++     +|.|.+++.+|+|.|.|.+.+.           ..........|.|..               +
T Consensus        70 ~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~  149 (256)
T 3juy_B           70 FQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSE  149 (256)
T ss_dssp             TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCC
T ss_pred             CcceEEEEEecCCCEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcce
Confidence            45799998543     6999999999999999999986           122224456788875               3


Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecCc----------cccccEEEeecC---eEEEeecCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLEP----------YQTKDIVVMQNG---SLLFTRVNQ  121 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~~----------~~~~~~~~~~~~---~l~i~~~~~  121 (460)
                      +.+...|....+.+|++++|.|.+.+.+..+.+.|+|.  +..+..          ....++....++   +|.|.+++.
T Consensus       150 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  229 (256)
T 3juy_B          150 IVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEP  229 (256)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             eEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCH
Confidence            45667788888999999999999998765357999983  222110          012333333222   599999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy535          122 NHQGRYTCTPYNAH  135 (460)
Q Consensus       122 ~d~G~y~C~~~~~~  135 (460)
                      +|+|.|+|.|.|..
T Consensus       230 ~DsG~Y~C~~~~~~  243 (256)
T 3juy_B          230 EDFALYYCQVYGAS  243 (256)
T ss_dssp             GGCSEEEEEECCSS
T ss_pred             hHCEEEEEEEeeCC
Confidence            99999999998753

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.66  E-value=1.1e-15  Score=130.30  Aligned_cols=126  Identities=13%  Similarity=0.196  Sum_probs=90.5

Q ss_pred             ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecC-------------------CeeEEccee
Q psy535            8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFP-------------------AKVTFTPTV   65 (460)
Q Consensus         8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------------------p~~~~~~~~   65 (460)
                      ..+|+.+..++   +|.|.+++.+|+|.|+|.+.|..+........|.|..+                   +.+...+..
T Consensus        61 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (250)
T 3esu_F           61 VPSRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGP  140 (250)
T ss_dssp             CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCC
T ss_pred             CCCCEEEeCCCCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCc
Confidence            45788776654   89999999999999999999876654345567777653                   223345566


Q ss_pred             eeecceeeEEEEEEEecCC-CCCeEEEeeC--CeecCc---------------cccccEEEeecC-----eEEEeecCCC
Q psy535           66 QYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRLLEP---------------YQTKDIVVMQNG-----SLLFTRVNQN  122 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~~~---------------~~~~~~~~~~~~-----~l~i~~~~~~  122 (460)
                      ..+.+|++++|.|.+.+.+ +.+.+.|+|+  +..+..               ....++....++     +|.|.+++.+
T Consensus       141 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  220 (250)
T 3esu_F          141 ELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSV  220 (250)
T ss_dssp             EEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcc
Confidence            7788999999999998865 2347999997  433211               112344444332     6999999999


Q ss_pred             CCeEEEEEEEc
Q psy535          123 HQGRYTCTPYN  133 (460)
Q Consensus       123 d~G~y~C~~~~  133 (460)
                      |+|.|+|.+.+
T Consensus       221 DsG~Y~C~~~~  231 (250)
T 3esu_F          221 DSAVYFCARSG  231 (250)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cCEEEEEEEec
Confidence            99999999986

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.66  E-value=1.2e-16  Score=133.84  Aligned_cols=191  Identities=16%  Similarity=0.181  Sum_probs=102.6

Q ss_pred             eeEEEEEEeCCCCcceeeeEEEEecCCee-EEcceeee-ecceeeEEEEEEEecCC---CCCeEEEeeCCeecCcccccc
Q psy535           31 GLYMCEVSNGIGEPQAAQAYLNVEFPAKV-TFTPTVQY-LPFRLQGVVQCHIKANP---TFQYVTWTKDKRLLEPYQTKD  105 (460)
Q Consensus        31 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~  105 (460)
                      |.|.|.+.+..+.. ...   .+..+|.+ ...|.... +..|+.++|.|.+.+.+   .+..|+|+|+|..+.......
T Consensus         1 ~~~~~~~~~~~~~c-~~~---~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~   76 (240)
T 4acp_A            1 GTKSCDKTHTCPPC-PAP---ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP   76 (240)
T ss_dssp             --------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECC
T ss_pred             CceeeeeeecCCCC-Ccc---ccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceecc
Confidence            78999999865531 111   11223443 44555444 55699999999999975   345799999999874321111


Q ss_pred             EEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEE--EeeCCCceeeCCCcccccCCCCeEEEEeeee
Q psy535          106 IVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV--LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQ  177 (460)
Q Consensus       106 ~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  177 (460)
                      .....+      +.|.|.....+|.|.|+|+|.+..+.......+.+  .+..+|.+.+.+.... ...|+.++|.|.+ 
T Consensus        77 ~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~-~~~g~~~~L~C~~-  154 (240)
T 4acp_A           77 REEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRD-ELTKNQVSLTCLV-  154 (240)
T ss_dssp             CEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGG-GGGSSEEEEEEEE-
T ss_pred             ceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChH-HhcCCceEEEEEE-
Confidence            111112      34777777777899999999998764334444432  2346777776655442 2348899999999 


Q ss_pred             ccCC-CCCC-eeEEEcCCCccCCccc---EE-Eecc------eEEEccccceeceEEEEEEeccc
Q psy535          178 EAEG-TQKP-TITWQRRDGVALPKNR---VK-IVGG------NITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       178 ~~~~-~p~~-~~~W~~~~~~~~~~~~---~~-~~~~------~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                        .+ .|.+ .+.|++++. .+....   .. ..++      .|.+......+.+.|+|.+.+..
T Consensus       155 --~gf~P~~i~v~W~k~g~-~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~  216 (240)
T 4acp_A          155 --KGFYPSDIAVEWESNGQ-PENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  216 (240)
T ss_dssp             --EEEBSSCCEEEEEETTE-ECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             --eEEeCCCcEEEEEECCE-ECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECC
Confidence              45 4554 899999554 332211   00 1122      34444444456789999999864

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.66  E-value=1.6e-15  Score=126.85  Aligned_cols=165  Identities=13%  Similarity=0.172  Sum_probs=105.6

Q ss_pred             ceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC---------------ccccccEEEee-----cCeEEEeec
Q psy535           63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE---------------PYQTKDIVVMQ-----NGSLLFTRV  119 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~---------------~~~~~~~~~~~-----~~~l~i~~~  119 (460)
                      |....+.+|++++|.|.+.+.+ ....+.|+|..  ..+.               .....++....     +.+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence            4456788999999999998765 13479999842  2110               01124555443     247999999


Q ss_pred             CCCCCeEEEEEEEcCCC-----Cc-ceeeEEEEEeeC----CCceee-CCCcccccCCCCeEEEEeeeeccCCCCCC-ee
Q psy535          120 NQNHQGRYTCTPYNAHG-----TQ-GSSGQMEVLVRK----PPAFTI-KPEAMYQRKVGESVDMHCEAQEAEGTQKP-TI  187 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~~g-----~~-~~~~~~~v~v~~----~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~  187 (460)
                      +.+|+|.|+|.+.+..|     .. .......|.|..    +|.+.. .+..  .+..|+.++|.|.+.  ...|.+ .+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~--~~~~g~~v~L~C~~~--g~~P~p~~v  162 (225)
T 1op3_H           87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS--KSTSGGTAALGCLVK--DYFPEPVTV  162 (225)
T ss_dssp             CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT--TCCCCCEEEEEEEEE--EEBSSCCEE
T ss_pred             ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc--cccCCCcEEEEEEEE--eEECCCeEE
Confidence            99999999999998764     10 111223444443    344433 3332  356799999999993  233766 99


Q ss_pred             EEEcCCCccCC---cccEE------EecceEEEccccceeceEEEEEEeccccee
Q psy535          188 TWQRRDGVALP---KNRVK------IVGGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       188 ~W~~~~~~~~~---~~~~~------~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      .|++++.. +.   .....      .....|.|......| |.|+|.|.|..+..
T Consensus       163 ~W~~~~~~-~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  215 (225)
T 1op3_H          163 SWNSGALT-SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  215 (225)
T ss_dssp             ECCTTSCC-TTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTE
T ss_pred             EEecCCCc-CCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCc
Confidence            99985543 21   01111      112357888887778 99999999976543

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.66  E-value=2.8e-16  Score=117.36  Aligned_cols=109  Identities=20%  Similarity=0.401  Sum_probs=82.5

Q ss_pred             CCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecC
Q psy535          330 LSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQG  408 (460)
Q Consensus       330 ~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (460)
                      .+..+.......+|.+|.++++.... +++.|+|.++.+++++|++|.|+|+....                      .+
T Consensus         5 ~s~~~~~~~~~~~P~~P~~l~~~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~----------------------~~   62 (124)
T 1wis_A            5 SSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVV----------------------GE   62 (124)
T ss_dssp             CSCCCCSCCCCCCCCCCEEEEEESCCSSCEEEEEECCCCCSSCCSEEEEEECBSCC----------------------ST
T ss_pred             ccccccccCCCCCCccCCCCEEEEecCCEEEEEEECCCCCCCcccEEEEEEEECCC----------------------CC
Confidence            34444455555679999999998876 69999999998888899999999986310                      01


Q ss_pred             ceeeeeecc--CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee-EeecC
Q psy535          409 NKDWLPIPV--TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTK  460 (460)
Q Consensus       409 ~~~~~~~~~--~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~-~~~T~  460 (460)
                      ...|..+..  .....+.++|.+|.|++.|.|||+|+|..|.|++|... .++|.
T Consensus        63 ~~~w~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~~~~~~~T~  117 (124)
T 1wis_A           63 GEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTL  117 (124)
T ss_dssp             TSCCEEEEEEESCTTCSEEEECSCCTTSEECCCCEEECSSCBCCCCCCCCCEECC
T ss_pred             CCCCeEeeeEccCCCceEEEeCCCCCCCEEEEEEEEEECCccCCCcCCccceEcC
Confidence            123433321  23567899999999999999999999999999999864 46663

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=4.2e-16  Score=115.65  Aligned_cols=108  Identities=19%  Similarity=0.371  Sum_probs=84.8

Q ss_pred             CCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccc
Q psy535          326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEY  404 (460)
Q Consensus       326 G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (460)
                      |.+..+..+.+.+...+|.+|.++++.... +++.|+|++|... +.|.+|.|+|+..+.                    
T Consensus         1 Gss~~~~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~-g~i~~Y~v~~~~~~~--------------------   59 (118)
T 2yrz_A            1 GSSGSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCE-RPLQGYSVEYQLLNG--------------------   59 (118)
T ss_dssp             CCCCCCSCCTTSSSCSCCCCCCCCEECCCBTTEEEEECCCCCCS-SCEEEEEEEEEBSSS--------------------
T ss_pred             CCCCCCCcceeecCCCCCCCCCceEEEeCCCCEEEEEeCCCCCC-CCccEEEEEEEECCC--------------------
Confidence            334455566677788889999999998776 6999999999875 689999999997442                    


Q ss_pred             eecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCc-eeEeec
Q psy535          405 REQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN-IVVVKT  459 (460)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~-~~~~~T  459 (460)
                           ..|..+.......+.+.|.+|.|++.|.|+|+|+|..|.|++|+ .+.++|
T Consensus        60 -----~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~t  110 (118)
T 2yrz_A           60 -----GELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIES  110 (118)
T ss_dssp             -----CCEEEEEESCTTCCEEEEESCCTTCEEEEEEEEEESSCEEEEEEEEEECCC
T ss_pred             -----CceEEEEcCCCCcCEEEeCCCCCCCEEEEEEEEEcCCcCCCCcCCceEeCC
Confidence                 12333333345678999999999999999999999999999998 555554

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.65  E-value=1.2e-15  Score=112.90  Aligned_cols=104  Identities=29%  Similarity=0.401  Sum_probs=84.3

Q ss_pred             CCCCcEEEEcc--CCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccce
Q psy535          329 MLSNIVVVKTK--GPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYR  405 (460)
Q Consensus       329 ~~s~~~~~~~~--~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (460)
                      ..|..+.+++.  ..+|.+|.++++...+ +++.|+|++|...++.+.+|.|+|+..+...                   
T Consensus         2 ~~S~~~~~~T~~~~~~P~~P~~l~~~~~~~~si~l~W~~p~~~~~~i~~Y~v~~~~~~~~~-------------------   62 (116)
T 1x5g_A            2 SSGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDK-------------------   62 (116)
T ss_dssp             CCCCCCCCSSCCCSSCCCCCSSCEEEEEETTEEEEECCCCSCCSSCCSEEEEEEEETTCCC-------------------
T ss_pred             CCccCeEEEcCCCCCCCcCCCccEEEecCCCEEEEEEeCCCCCCCcccEEEEEEEECCCCc-------------------
Confidence            45667777773  3568999999998876 6999999999877889999999999765311                   


Q ss_pred             ecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          406 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                            |..+   ....+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus        63 ------~~~~---~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  108 (116)
T 1x5g_A           63 ------EQDV---DVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTL  108 (116)
T ss_dssp             ------CCCE---EECSSEEEECSCCTTCEEEEEEEEECSSCCCCBCCCCCEECC
T ss_pred             ------cEEE---ecCCceEEEcCCCCCCEEEEEEEEEcCCCcCCCCCCEEEECC
Confidence                  1111   124678999999999999999999999999999999999884

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.65  E-value=1.1e-15  Score=131.76  Aligned_cols=171  Identities=13%  Similarity=0.148  Sum_probs=106.7

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC------------c--cccccEEEee----cCeEEE
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE------------P--YQTKDIVVMQ----NGSLLF  116 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~------------~--~~~~~~~~~~----~~~l~i  116 (460)
                      +.+...|....+.+|++++|.|.+.. +. ..+.|+|  .+....            .  ....++....    +.+|.|
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPIS-GH-TALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI  104 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCBT-TC-CEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeCC-CC-ceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence            34556677788899999999999863 43 4799999  222110            0  0014454443    347999


Q ss_pred             eecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeC------CCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCC-eeE
Q psy535          117 TRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRK------PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKP-TIT  188 (460)
Q Consensus       117 ~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~-~~~  188 (460)
                      .+++.+|+|.|+|.+.+..+.........|.|..      +|.+.+.+.....+..|+.++|.|.+   .+. |.+ .+.
T Consensus       105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~---~g~~p~~~~v~  181 (268)
T 3pl6_D          105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA---TGFYPDHVELS  181 (268)
T ss_dssp             CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEE---EEEBSSCEEEE
T ss_pred             CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEE---CcccCCCeEEE
Confidence            9999999999999998742222222333444443      55544433222245569999999999   453 434 899


Q ss_pred             EEcCCCccCCcccE---------------EEecceEEEcccccee-ceEEEEEEecccce
Q psy535          189 WQRRDGVALPKNRV---------------KIVGGNITIEGLRRVD-FGYYECVVSNEVAT  232 (460)
Q Consensus       189 W~~~~~~~~~~~~~---------------~~~~~~l~i~~~~~~~-~g~y~C~a~n~~g~  232 (460)
                      |++++..+......               ......|.|......| .|.|+|.+.|....
T Consensus       182 W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          182 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             EEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            99954433221110               0112345666666666 89999999987544

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1

Probab=99.65  E-value=4.1e-16  Score=112.68  Aligned_cols=97  Identities=24%  Similarity=0.378  Sum_probs=76.4

Q ss_pred             CCCCCCCcceEEEeecceEEEEecCCCCCCcc-ceEEEEEEEEcCC--eeeeccccCCCCcccccccceecCceeeeeec
Q psy535          340 GPKPGPPRNVSVTEVNNGFVISWQPPLERASL-IQYYLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIP  416 (460)
Q Consensus       340 ~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~-i~~y~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (460)
                      +.+|.+|.++.+...++++.|+|++|...++. |.+|.|+|+..+.  |..                       .|..+.
T Consensus         4 ~~~P~~P~~~~~~~~~~~v~l~W~~P~~~~G~pi~~Y~v~~~~~~~~~~~~-----------------------~~~~~~   60 (105)
T 2haz_A            4 MDTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS-----------------------KWYDAK   60 (105)
T ss_dssp             CCCCCCCEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEE-----------------------EEEEHH
T ss_pred             CCCCcCCCCCEEEEcCCcEEEEEcCCcccCCccccEEEEEEEECCCCCCcc-----------------------ceEEcc
Confidence            45688899999988875699999999766665 9999999998653  211                       011111


Q ss_pred             cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      . ....+.++|.+|.|++.|.|+|+|+|..|.|++|+.+.|+|.
T Consensus        61 ~-~~~~~~~~i~~L~p~t~Y~~rV~A~n~~G~g~~S~~~~~~T~  103 (105)
T 2haz_A           61 E-ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ  103 (105)
T ss_dssp             H-HHHHSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECC
T ss_pred             c-cCCccEEEECCCCCCCEEEEEEEEEcCCccCCCcCCEeeEEe
Confidence            1 114578999999999999999999999999999999999984

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.65  E-value=9.7e-16  Score=114.09  Aligned_cols=100  Identities=20%  Similarity=0.361  Sum_probs=77.6

Q ss_pred             EEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeee
Q psy535          336 VKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP  414 (460)
Q Consensus       336 ~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (460)
                      ......+|.+|.++.+...+ +++.|+|+++.+++++|.+|.|+|+..+.                        ...|..
T Consensus        11 ~~~~~~~P~~P~~~~~~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~------------------------~~~w~~   66 (121)
T 1x4z_A           11 DHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKK------------------------VGDWIL   66 (121)
T ss_dssp             CSSSCCCCCCCCCCEEEECCSSEEEEECCCCCCTTSCCCEEEEEEEESSS------------------------CCCCEE
T ss_pred             ccCcCCCCccCCCCEEEEccCCEEEEEEECCCCCCCcceEEEEEEEECCC------------------------CCceEE
Confidence            33445569999999998876 69999999877777899999999997431                        112333


Q ss_pred             ecc-CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeE-eec
Q psy535          415 IPV-TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV-VKT  459 (460)
Q Consensus       415 ~~~-~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~-~~T  459 (460)
                      +.. .....+.++|.+|.|++.|.|||+|+|..|.|++|.... ++|
T Consensus        67 ~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~v~~  113 (121)
T 1x4z_A           67 ATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVV  113 (121)
T ss_dssp             EEEEECTTCCEEEEESCCTTCEEEEEEEEEETTEECCCCCCCCCEEC
T ss_pred             eecccCCCcCEEEECCCCCCCEEEEEEEEEcCCCcCCCcCCCCCEEc
Confidence            221 135678999999999999999999999999999998764 444

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens}

Probab=99.65  E-value=1.4e-14  Score=118.55  Aligned_cols=181  Identities=19%  Similarity=0.171  Sum_probs=108.4

Q ss_pred             CCCceeeeee--cceEEEEeecCCCCCCCceeeEEEEEEecCCCC-----------eeeeeccCCCCceEEEccCccCcc
Q psy535          248 APYNITGVAT--EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD-----------WLPIPVTPPGSTQITINRLTPATT  314 (460)
Q Consensus       248 ~p~~~~~~~~--~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~i~~l~~~~~  314 (460)
                      .|.++.+...  ...++++|.++......- ..|.+.+...+...           .............+.+..+.....
T Consensus         3 ~~~nlsC~~~~~~~~~~C~W~~g~~~~l~t-~~~~l~~~~~~~~c~~~~~~~~~~~~~~C~~~~~~~~~C~~~~~~~~~~   81 (206)
T 3v6o_A            3 VNINISCETDGYLTKMTCRWSTSTIQSLAE-STLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSG   81 (206)
T ss_dssp             -CCCCEEEECTTSSCEEEEECCCC---------EEEEEEECSSCCCSSCCCCSSCEEECEEECTTSCEEEEECSCCTTSC
T ss_pred             CCEEEEEEECCCCcEEEEEecCCCcCCccc-ccEEEEEEEcCcCccccccccccCcCCCCCCCCCCCceEEeCcHHhccc
Confidence            3556665444  368999999865544321 15666665433100           011111122345788888888899


Q ss_pred             EEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEee--cceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccc
Q psy535          315 YEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEV--NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKG  391 (460)
Q Consensus       315 ~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~--~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~  391 (460)
                      |.|++.|.|..|... |..+.+.... ..|.||.++.+...  ..++.|+|++|.... .+..|+|+|+..+.       
T Consensus        82 Y~~~V~a~N~~G~~~-s~~~~~~~~~~vkp~pP~~l~v~~~~~~~~l~l~W~~P~~~~-~~l~yev~y~~~~~-------  152 (206)
T 3v6o_A           82 YTMWIRINHSLGSLD-SPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPE-NNLQFQIRYGLSGK-------  152 (206)
T ss_dssp             EEEEEEEC---CCEE-CCCEEECGGGGBCCCCCCSCEEEEETTTTEEEEEC---------CEEEEEEEEESSS-------
T ss_pred             EEEEEEEEcCCcccc-CCcccEeecceEcCCCCCceEeEEecCCCeEEEEECCCCCCC-CcEEEEEEEEECCC-------
Confidence            999999999999764 5666664332 35899999998865  359999999986533 46899999997541       


Q ss_pred             cCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535          392 QIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV  455 (460)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~  455 (460)
                                       ...|..+.........+.+.+|.|++.|.|+|+|.+..|.|.||++.
T Consensus       153 -----------------~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~G~WSeWS  199 (206)
T 3v6o_A          153 -----------------EVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWS  199 (206)
T ss_dssp             -----------------SCCCEEEEECC---CEEEECCSCTTSCEEEEEEEEETTSCSCCCCCC
T ss_pred             -----------------CCceEEEecccCcceeEEeecCCCCCEEEEEEEEecCCCCCcCCCCC
Confidence                             01233332222233568899999999999999999987777666653

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.65  E-value=8.9e-16  Score=111.10  Aligned_cols=93  Identities=22%  Similarity=0.286  Sum_probs=76.1

Q ss_pred             cCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeec
Q psy535          339 KGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIP  416 (460)
Q Consensus       339 ~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (460)
                      ...+|.+|.++++...+ +++.|+|++|.+++++|.+|.|+|+..+. |....                           
T Consensus         4 ~~~~P~~P~~~~~~~~s~~sv~l~W~~p~~~g~~i~~Y~v~~~~~~~~~~~~~---------------------------   56 (106)
T 1x4x_A            4 GSSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICY---------------------------   56 (106)
T ss_dssp             SCCSCCCCCCCCCEEEETTEEEEECCCCSCSSSCCCEEEEEEESSTTSCCEEE---------------------------
T ss_pred             CCCCcCCCCCCEEEEcCCCEEEEEEcCCCCCCCcceEEEEEEEcCCCceEEEE---------------------------
Confidence            34568999999988776 69999999998866699999999986442 11110                           


Q ss_pred             cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                        ....+.+.|.+|.|++.|.|||+|+|..|.|++|+.+.++|+
T Consensus        57 --~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~g~~S~~v~~~T~   98 (106)
T 1x4x_A           57 --CGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTP   98 (106)
T ss_dssp             --EESCSEEEEESCCSSCEEEEEEEEECSSCCCCBCCCEEEECC
T ss_pred             --eCCcceEEEcCCCCCCEEEEEEEEEcCCcCCCCcCCEEEECC
Confidence              124578999999999999999999999999999999999885

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.65  E-value=4.6e-16  Score=113.33  Aligned_cols=97  Identities=19%  Similarity=0.292  Sum_probs=78.7

Q ss_pred             ccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeec
Q psy535          338 TKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP  416 (460)
Q Consensus       338 ~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (460)
                      +.+.+|.+|.++++...+ ++|.|+|++|...++.|.+|+|+|+..+...           .            .+.   
T Consensus         3 T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~-----------~------------~~~---   56 (108)
T 2djs_A            3 SGSSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNE-----------F------------NSS---   56 (108)
T ss_dssp             SCCCCCCCCSCCEEEEECSSEEEEECCCCSCCSSCEEEEEEEEEETTSCS-----------T------------TCE---
T ss_pred             cCCCCCCCCcceEEEecCCCEEEEEECCCCCCCCeEEEEEEEEEECCCCC-----------c------------cee---
Confidence            445679999999998776 6999999999877889999999999765300           0            000   


Q ss_pred             cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ......+.+.|.+|.|++.|.|+|+|+|..|.|++|.++.++|+
T Consensus        57 ~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  100 (108)
T 2djs_A           57 MARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTL  100 (108)
T ss_dssp             EEEESSSEEEEESCCTTCEEEEEEEEEESSCEEEECCCEEEECC
T ss_pred             EEecCccEEEEcCCCCCCEEEEEEEEEeCCEECCCCCCEEEEeC
Confidence            01135688999999999999999999999999999999999885

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C

Probab=99.65  E-value=1.2e-15  Score=109.07  Aligned_cols=94  Identities=24%  Similarity=0.342  Sum_probs=72.9

Q ss_pred             CCCcceEEEeec-ceEEEEecCCCC--CCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          344 GPPRNVSVTEVN-NGFVISWQPPLE--RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       344 ~~p~~~~~~~~~-~~v~l~W~~~~~--~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      .+|.++.+...+ +++.|+|++|..  .++.|.+|+|+|+..+..                      .+..|..+.. ..
T Consensus         6 ~~P~~~~~~~~s~tsi~v~W~~p~~~~~ng~i~gY~v~y~~~~~~----------------------~~~~~~~~~v-~~   62 (102)
T 3n1f_C            6 TGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSD----------------------NDSDYKRDVV-EG   62 (102)
T ss_dssp             SCCEEEEEEECSSSCEEEEEECCC-----CCCCEEEEEEEETTCC----------------------CGGGCEEEEE-ET
T ss_pred             CCCceeEEEEcCCCEEEEEeECCChhhcCCccceEEEEEEECCCC----------------------CCCceEEEEE-cC
Confidence            689999998776 699999999864  688999999999976430                      0011221111 12


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ..+++.|.+|.|++.|.|+|+|+|..|.|++|..+.++||
T Consensus        63 ~~~~~~l~~L~p~t~Y~v~V~A~n~~G~G~~S~~~~~~T~  102 (102)
T 3n1f_C           63 SKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICETK  102 (102)
T ss_dssp             TCSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECC
T ss_pred             CceEEECCCCCCCCEEEEEEEEECCCcCCCCCCCEEeecC
Confidence            4567899999999999999999999999999999999997

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.65  E-value=1.3e-16  Score=130.81  Aligned_cols=123  Identities=13%  Similarity=0.233  Sum_probs=85.3

Q ss_pred             CCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec-------------------------------CCeeEEccee
Q psy535           17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF-------------------------------PAKVTFTPTV   65 (460)
Q Consensus        17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-------------------------------~p~~~~~~~~   65 (460)
                      +++|.|.+++.+|+|.|+|.+.+..    +..+.|.|..                               ++.+...|. 
T Consensus        48 ~~~L~i~~v~~~DsG~Y~C~~~~~~----s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-  122 (204)
T 1sy6_A           48 KKKWNLGSNAKDPRGMYQCKGSQNK----SKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY-  122 (204)
T ss_dssp             CCCEEEEEGGGCCEEEEEEESSSSC----CCCEEEEEEC------------------------------------CCCC-
T ss_pred             CCeEEeCCCCcCCCEEEEEEecCCC----CeeEEEEEEEeccccccccccccccccccccccccccccccccceecCCc-
Confidence            3579999999999999999975432    2234454430                               111222222 


Q ss_pred             eeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeec-CCCCCeEEEEEEEcCCCCcceeeEE
Q psy535           66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRV-NQNHQGRYTCTPYNAHGTQGSSGQM  144 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~y~C~~~~~~g~~~~~~~~  144 (460)
                      ....+|++++|.|.  +.|.+ .++|+|++..+............++.|.|.++ +.+|+|.|+|.|.|..|.. .+..+
T Consensus       123 ~v~~~G~~v~L~C~--g~p~p-~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~-~s~~l  198 (204)
T 1sy6_A          123 KVSISGTTVILTCP--QYPGS-EILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPED-ANFYL  198 (204)
T ss_dssp             EEEEETTEEEEECS--CCCSS-CEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGG-SSCEE
T ss_pred             eeeecCCcEEEEcC--CCCCC-ceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCc-eeEEE
Confidence            22238999999998  66655 69999999988643223333345789999999 9999999999999999853 45666


Q ss_pred             EEEe
Q psy535          145 EVLV  148 (460)
Q Consensus       145 ~v~v  148 (460)
                      .|.+
T Consensus       199 ~l~~  202 (204)
T 1sy6_A          199 YLRA  202 (204)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.65  E-value=1.5e-15  Score=124.59  Aligned_cols=112  Identities=12%  Similarity=0.121  Sum_probs=82.6

Q ss_pred             CCeEEEeecCCCCCeeEEEEEEeCCC----CcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEecCCCCCeE
Q psy535           17 DGTLVINPVGSDDSGLYMCEVSNGIG----EPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYV   89 (460)
Q Consensus        17 ~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v   89 (460)
                      ++.|.|.+++.+|+|.|+|.+.+...    ...+..+.|.|..   +|.+...|. ..+.+|++++|.|.+.+. . +.+
T Consensus        62 ~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~~-~-~~~  138 (201)
T 1nkr_A           62 KANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRSS-Y-DMY  138 (201)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESSC-C-SEE
T ss_pred             eEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCCC-C-ceE
Confidence            45899999999999999999986531    2235567788864   356666665 467899999999999863 3 479


Q ss_pred             EEeeCCeecCccccccEEEe---ecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           90 TWTKDKRLLEPYQTKDIVVM---QNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        90 ~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      .|+|+|..+.... ......   .++.|.|.+++  |+|.|+|.|.+.
T Consensus       139 ~w~k~g~~~~~~~-~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          139 HLSREGEAHERRL-PAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EEEETTCSSCEEE-ECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             EEEECCcccCccc-ccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            9999998765321 111111   14579999998  999999999864

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.65  E-value=7.9e-16  Score=123.28  Aligned_cols=114  Identities=17%  Similarity=0.288  Sum_probs=83.4

Q ss_pred             cceEEE-eeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCC
Q psy535            9 ETRVVI-KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQ   87 (460)
Q Consensus         9 ~~r~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~   87 (460)
                      .+|+++ ..+|+|.|.+++.+|+|.|+|.+.+..  .....+.|.|..++.   .|.. . ..+.+++|.|.+...|.+ 
T Consensus        59 ~~R~~l~~~~~sL~I~~v~~~D~G~Y~C~v~~~~--~~~~~~~L~V~~~~~---~P~i-~-~~~~~v~L~C~~~~gp~p-  130 (180)
T 2dru_A           59 KDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHET--EDQWKITMEVYEMVS---KPMI-Y-WECSNATLTCEVLEGTDV-  130 (180)
T ss_dssp             TTTEEECTTTCCEEECSCCGGGCEEEEEEEESSS--EEEEEEEEEEECCCC---CCEE-E-EEGGGTEEEEECSSCTTC-
T ss_pred             CCeEEEeCCCccEEEcCCCHHHCeEEEEEEEcCC--eEEEEEEEEEECCCC---CCEE-E-ecCCCEEEEEEeCCCCCC-
Confidence            489999 567899999999999999999998765  336678888876432   1111 1 134569999999444654 


Q ss_pred             eEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535           88 YVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS  140 (460)
Q Consensus        88 ~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~  140 (460)
                      .++|++++..+..        ..+.+|.+..  .+|+|.|+|.|.|..+....
T Consensus       131 ~i~W~~~~~~l~~--------~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~  173 (180)
T 2dru_A          131 ELKLYQGKEHLRS--------LRQKTMSYQW--TNLRAPFKCKAVNRVSQESE  173 (180)
T ss_dssp             EEEEEETTEEEEE--------ESSSEEEEEC--SCCSSCEEEEEEETTEEEEE
T ss_pred             EEEEEECCeECcC--------CCCCEEEEEE--hhcCccEEEEEecCcCcccc
Confidence            8999999988741        2234566633  78999999999998876543

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.65  E-value=1.1e-15  Score=129.47  Aligned_cols=126  Identities=19%  Similarity=0.308  Sum_probs=93.3

Q ss_pred             ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC------eeEEcceeeeecceeeEEEEE
Q psy535            8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA------KVTFTPTVQYLPFRLQGVVQC   78 (460)
Q Consensus         8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C   78 (460)
                      ..+|+.+..++   +|.|.+++.+|+|.|+|.|.|..+......+.|.|..++      .+...+....+.+|++++|.|
T Consensus        62 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C  141 (240)
T 1moe_A           62 IPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSC  141 (240)
T ss_dssp             CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEE
T ss_pred             CCccEEEEecCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEE
Confidence            35788887654   899999999999999999999866534556788887642      234456677888999999999


Q ss_pred             EEecCCC-CCeEEEeeC--CeecC---------------ccccccEEEeec-----CeEEEeecCCCCCeEEEEEEEc
Q psy535           79 HIKANPT-FQYVTWTKD--KRLLE---------------PYQTKDIVVMQN-----GSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        79 ~~~~~~~-~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~-----~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      .+.+.|. .+.+.|+|+  +..+.               .....++....+     .+|.|.+++.+|+|.|+|.|.+
T Consensus       142 ~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          142 TASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             EEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             EEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            9998764 257999995  22210               001234444332     3699999999999999999984

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.65  E-value=4.6e-16  Score=128.74  Aligned_cols=129  Identities=18%  Similarity=0.206  Sum_probs=91.2

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec----CCeeEEcceeeeecceeeEEEEE
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQGVVQC   78 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C   78 (460)
                      ..+|+.+..+     ++|.|.+++.+|+|.|+|.+.+..  .......|.|..    +|.+...+....+.+|+.++|.|
T Consensus        63 ~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C  140 (210)
T 3d9a_H           63 LKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGD--YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGC  140 (210)
T ss_dssp             GTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETTSS--CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEE
T ss_pred             cCceEEEEecCCCCEEEEEECCCCcccCEEEEEEEecCc--ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEE
Confidence            4689998753     289999999999999999999863  113346777763    45554444334456899999999


Q ss_pred             EEecC-CCCCeEEEeeCCeecCccccccEE----EeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535           79 HIKAN-PTFQYVTWTKDKRLLEPYQTKDIV----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        79 ~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                      .+.+. |.+..++|++++..+.........    ....+.|.|.++..+| |.|+|.|.|..|...
T Consensus       141 ~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  205 (210)
T 3d9a_H          141 LVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK  205 (210)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred             EEeeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence            99987 544389999998865321112111    1122358899888877 999999999887653

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=4.1e-16  Score=116.43  Aligned_cols=111  Identities=29%  Similarity=0.477  Sum_probs=88.6

Q ss_pred             CCCCCCCcEEEEccCCCC-CCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCccccccc
Q psy535          326 GDGMLSNIVVVKTKGPKP-GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE  403 (460)
Q Consensus       326 G~~~~s~~~~~~~~~~~P-~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (460)
                      |.|.+|..+.+.+....| .+|.++++...+ +++.|+|++|...++.|.+|.|+|+..+...                 
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~-----------------   63 (121)
T 2dlh_A            1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQH-----------------   63 (121)
T ss_dssp             CCCCCCSSSCSCCCCCCCCSCCEEEEECCCSSSBCCEEEECCSCCCSCEEEEEEECCSCTTSC-----------------
T ss_pred             CCCCCCCCEEEECCCcCCCCCCcccEEEecCCCEEEEEECCCCCCCCcEeEEEEEEEeCCCCC-----------------
Confidence            567788888888887777 499999998766 6999999999877889999999998654200                 


Q ss_pred             ceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                           ...|..+  .....+.+.|.+|.|++.|.|+|+|.|..|.|++|+.+.++|+
T Consensus        64 -----~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  113 (121)
T 2dlh_A           64 -----VNNWMKH--NVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQ  113 (121)
T ss_dssp             -----TTTSCCC--CCSSCSEECCBSCCSSCEEEEEEEEEESSCBCCCCCCEEEECC
T ss_pred             -----ccccEEE--ecCCceEEEecCCCCCCEEEEEEEEEeCCccCCCCCCEEEECC
Confidence                 0011111  1135678999999999999999999999999999999999884

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.64  E-value=7.6e-16  Score=128.87  Aligned_cols=142  Identities=15%  Similarity=0.164  Sum_probs=90.5

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec----CCeeEEcceeeeecceeeEEEEE
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQGVVQC   78 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C   78 (460)
                      ..+|+.+..+     ++|.|.+++.+|+|.|+|.+.+..+......+.|.|..    +|.+...+....+.+|+.++|.|
T Consensus        64 ~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C  143 (227)
T 1mju_H           64 FKNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGC  143 (227)
T ss_dssp             GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEE
T ss_pred             cCCcEEEEEeCCCCeEEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEE
Confidence            3579998753     49999999999999999999986322222345788864    34444333223456799999999


Q ss_pred             EEecC-CCCCeEEEeeCCeecCccccccEE----EeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535           79 HIKAN-PTFQYVTWTKDKRLLEPYQTKDIV----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVRKPP  152 (460)
Q Consensus        79 ~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p  152 (460)
                      .+.+. |.+..|.|++++..+.........    ....+.|.|.++..+| |.|+|.|.|..+..  .....+.+..+|
T Consensus       144 ~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~--~~~~~~~~~~~p  219 (227)
T 1mju_H          144 LVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST--KVDKKIEPRGPT  219 (227)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTE--EEEEECCCCCC-
T ss_pred             EeecEeCCCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCc--ceEEEeCCCCCC
Confidence            99986 544489999998765321111111    1123468898888888 99999999965543  333444455554

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.64  E-value=2.5e-16  Score=132.41  Aligned_cols=160  Identities=13%  Similarity=0.127  Sum_probs=102.8

Q ss_pred             ecceeeEEEEEEEecC---CCCCeEEEeeCCeecCcccccc-E-----EEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           68 LPFRLQGVVQCHIKAN---PTFQYVTWTKDKRLLEPYQTKD-I-----VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        68 ~~~g~~~~l~C~~~~~---~~~~~v~W~~~~~~~~~~~~~~-~-----~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      +.+|++++|.|.+.+.   |.+..|+|+|++..+....... .     .....+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            6789999999999886   5444799999886653211000 0     01122469999999999999999999987764


Q ss_pred             ceeeEEEE--EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCC-CeeEEEcCCCccCCccc---EE-EecceE-
Q psy535          139 GSSGQMEV--LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQK-PTITWQRRDGVALPKNR---VK-IVGGNI-  209 (460)
Q Consensus       139 ~~~~~~~v--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~-~~~~W~~~~~~~~~~~~---~~-~~~~~l-  209 (460)
                      .....+.+  .+..+|.+.+.+... ....|+.++|.|.+   .| .|. ..+.|+++ +..+....   .. ..++++ 
T Consensus       109 ~~~~~v~~~~~~~~~P~v~v~~~~~-~~~~g~~~~L~C~~---~g~~P~~~~v~W~k~-g~~l~~~~~~~~~~~~dgt~~  183 (239)
T 1i1c_A          109 PIEKSISKPEGTPRGPQVYTMAPPK-EEMTQSQVSITCMV---KGFYPPDIYTEWKMN-GQPQENYKNTPPTMDTDGSYF  183 (239)
T ss_dssp             CEEEEECCCSSCCBCCEEEEECCCG-GGGGSSEEEEEEEE---EEEBSSCCEEEEEET-TEECSSEEECCCEECTTSCEE
T ss_pred             CcEEEEecCCCCCcCCEEEEECCCh-HHhcCCcEEEEEEE---eeeECCCeEEEEEEC-CEECCCceecCceECCCCCEE
Confidence            33333332  345677776665543 22347899999999   45 454 48999995 44443211   11 122333 


Q ss_pred             -----EEccccceeceEEEEEEecccce
Q psy535          210 -----TIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       210 -----~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                           .|......+.|.|+|.+.|....
T Consensus       184 ~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          184 LYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             EEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence                 33333334589999999987543

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.64  E-value=1.3e-15  Score=128.80  Aligned_cols=127  Identities=12%  Similarity=0.175  Sum_probs=90.9

Q ss_pred             ccceEEEee----CCeEEEeecCCCCCeeEEEEEEeCCCCc----ceeeeEEEEecCC------------eeEEcceeee
Q psy535            8 LETRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGIGEP----QAAQAYLNVEFPA------------KVTFTPTVQY   67 (460)
Q Consensus         8 ~~~r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~p------------~~~~~~~~~~   67 (460)
                      ..+|+.+..    +++|.|.+++.+|+|.|+|.|.+..+..    ......|.|...+            .+...|....
T Consensus        59 ~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~  138 (238)
T 2p1y_A           59 IPDGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLT  138 (238)
T ss_dssp             SCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEE
T ss_pred             ccceEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEE
Confidence            357888864    2489999999999999999999876521    1234577776543            4566677788


Q ss_pred             ecceeeEEEEEEEecCCCCCeEEEeeCCe--ecC----------ccccccEEEee-----cCeEEEeecCCCCCeEEEEE
Q psy535           68 LPFRLQGVVQCHIKANPTFQYVTWTKDKR--LLE----------PYQTKDIVVMQ-----NGSLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        68 ~~~g~~~~l~C~~~~~~~~~~v~W~~~~~--~~~----------~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~  130 (460)
                      +.+|++++|.|.+.+.|.+ .+.|+|++.  ...          .....++....     ..+|.|.+++.+|+|.|+|.
T Consensus       139 v~~G~~v~L~C~~~~~p~~-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  217 (238)
T 2p1y_A          139 VWEGETAILNCSYENSAFD-YFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCA  217 (238)
T ss_dssp             EETTSCEEEEEECCCTTCC-EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEE
T ss_pred             EeCCCeEEEEEEEecCCCC-cEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEE
Confidence            8999999999999988765 899999641  110          00123443331     24799999999999999999


Q ss_pred             EEcCC
Q psy535          131 PYNAH  135 (460)
Q Consensus       131 ~~~~~  135 (460)
                      |.|..
T Consensus       218 a~n~~  222 (238)
T 2p1y_A          218 AIDTN  222 (238)
T ss_dssp             EEETT
T ss_pred             EeeCC
Confidence            99873

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.64  E-value=5.6e-16  Score=115.09  Aligned_cols=106  Identities=25%  Similarity=0.367  Sum_probs=86.8

Q ss_pred             CCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccc
Q psy535          326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEY  404 (460)
Q Consensus       326 G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (460)
                      |.|.+|..+.+++...+|.+|.++++...+ +++.|+|++|...++.|.+|.|+|+..+...                  
T Consensus         1 G~g~~S~~~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~------------------   62 (119)
T 1wfn_A            1 GSSGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTN------------------   62 (119)
T ss_dssp             CCCCCSCCCSCCSSCCSCCCCSCCEEESCCSSEEEEECCCCTTCCSCCCEEEEEEEESSCGG------------------
T ss_pred             CCCCCCCCEEEECCCCCCCCCCceEEEECCCCEEEEEEcCCCCCCCcEEEEEEEEEECCCCC------------------
Confidence            667788889999998889999999998876 6999999999887889999999999764200                  


Q ss_pred             eecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeE
Q psy535          405 REQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV  456 (460)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~  456 (460)
                             +..........+.+.|.+|.|++.|.|+|+|+|..|.|++|..+.
T Consensus        63 -------~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~  107 (119)
T 1wfn_A           63 -------TRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI  107 (119)
T ss_dssp             -------GCCCEEECSSCCEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEE
T ss_pred             -------ceEEEEeCCCceEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEE
Confidence                   000011224678899999999999999999999999999998873

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.64  E-value=1.2e-16  Score=132.55  Aligned_cols=130  Identities=21%  Similarity=0.221  Sum_probs=92.4

Q ss_pred             cceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEe----cCCeeEEcceeeeecceeeEEEEEE
Q psy535            9 ETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVVQCH   79 (460)
Q Consensus         9 ~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~   79 (460)
                      ++|+.+..++   +|.|.+++.+|+|.|+|.|.|..+.  .......|.|.    .+|.+...+....+.+|++++|.|.
T Consensus        57 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~  136 (212)
T 1nfd_E           57 PERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCL  136 (212)
T ss_dssp             CTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEE
T ss_pred             cccEEEEeeCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEE
Confidence            5788887543   8999999999999999999973221  11334566773    4566665444444567889999999


Q ss_pred             EecC-CCCCeEEEeeCCeecCcccccc-EE-----EeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           80 IKAN-PTFQYVTWTKDKRLLEPYQTKD-IV-----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        80 ~~~~-~~~~~v~W~~~~~~~~~~~~~~-~~-----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      +.+. |+.+.|+|+++|..+....... ..     ....+.|.|.++..+|+|.|+|.|.|..+..
T Consensus       137 ~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (212)
T 1nfd_E          137 VNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV  202 (212)
T ss_dssp             EEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             EEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence            9987 4435899999998875421100 00     1112458999999999999999999987653

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.64  E-value=8.1e-16  Score=112.74  Aligned_cols=99  Identities=23%  Similarity=0.350  Sum_probs=80.4

Q ss_pred             EEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeee
Q psy535          336 VKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP  414 (460)
Q Consensus       336 ~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (460)
                      +++...+|.+|.++++.... +++.|+|++|...++.|.+|.|+|+..+..                       ...|..
T Consensus         4 ~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~-----------------------~~~~~~   60 (111)
T 1x5l_A            4 GSSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKE-----------------------MQSYST   60 (111)
T ss_dssp             CCCSCCCCCCCCCEECSCBCSSCEEEEECCCSCCCSCCCEEEEEEEESSSC-----------------------CSSCEE
T ss_pred             EEcCCCCCCCCceEEEEEcCCCEEEEEECCCCCCCCEEEEEEEEEEECCCC-----------------------ceeEEE
Confidence            45667779999999987766 599999999987788999999999976420                       011111


Q ss_pred             eccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          415 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       415 ~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      +   ....+.+.|.+|.|++.|.|+|+|.|..|.|++|+.+.++|+
T Consensus        61 ~---~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  103 (111)
T 1x5l_A           61 L---KAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETG  103 (111)
T ss_dssp             E---EESSSEEEECSCCTTCEEEECEEEEETTEECCCCCCEEEECC
T ss_pred             e---cCCCCEEEEcCCCCCCEEEEEEEEEeCCcCCCCcccEEEEcC
Confidence            1   135678999999999999999999999999999999999884

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.64  E-value=7.2e-17  Score=136.03  Aligned_cols=129  Identities=17%  Similarity=0.188  Sum_probs=78.1

Q ss_pred             cceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEec---CCeeEEcceeeeecceeeEEEEEEEec
Q psy535            9 ETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEF---PAKVTFTPTVQYLPFRLQGVVQCHIKA   82 (460)
Q Consensus         9 ~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~   82 (460)
                      .+|+.+..++   +|.|.+++.+|+|.|+|.+.+..+........|.|..   +|.+...+......+|++++|.|.+.+
T Consensus        81 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g  160 (233)
T 3bqu_C           81 PSRFSSSGYGTDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNN  160 (233)
T ss_dssp             CTTCCCCEEEEEEEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEE
T ss_pred             CccEEeeccCCEEEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEcc
Confidence            5677665443   8999999999999999999987654333345566654   566665444333446889999999998


Q ss_pred             CCCC-CeEEEeeCCeecCccccc--cE------EEeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           83 NPTF-QYVTWTKDKRLLEPYQTK--DI------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        83 ~~~~-~~v~W~~~~~~~~~~~~~--~~------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      .+++ ..++|+|+|..+......  ..      .....+.|.|..+..+|+|.|+|.|.|....
T Consensus       161 ~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          161 FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             EBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             ccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            6443 379999999877532000  00      0011235889999999999999999986543

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.64  E-value=7e-16  Score=113.91  Aligned_cols=106  Identities=23%  Similarity=0.361  Sum_probs=86.9

Q ss_pred             CCCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccc
Q psy535          326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEY  404 (460)
Q Consensus       326 G~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (460)
                      |.|..|..+.+.+...+|.+|.++++...+ +++.|+|++|.+  +.+.+|+|+|+..+..                   
T Consensus         1 G~g~~S~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~--~~i~~Y~v~~~~~~~~-------------------   59 (115)
T 1x5z_A            1 GSSGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRS--DTIANYELVYKDGEHG-------------------   59 (115)
T ss_dssp             CCCCCCCCCCCCCCSCCCCCCEEEEEECSSSSEEEEEEECCSC--CCCCEEEECBEESSSC-------------------
T ss_pred             CCCCCCCCEEEECCCCCCCCCccCEeeeCCCCEEEEEEcCCCC--CCccEEEEEEEeCCCC-------------------
Confidence            567788888898888889999999998876 699999999975  3899999999975430                   


Q ss_pred             eecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          405 REQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                            .|..+.  ....+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|+
T Consensus        60 ------~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  107 (115)
T 1x5z_A           60 ------EEQRIT--IEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTM  107 (115)
T ss_dssp             ------CCBCCE--ECSSSEEEEECCCTTCEEEECEEEECSSCEEEECCCEEEECC
T ss_pred             ------CceEEe--cCCCcEEEECCCCCCCeEEEEEEEECCCcccCCCcCEEEecC
Confidence                  010010  124588999999999999999999999999999999999884

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.63  E-value=5.1e-16  Score=112.02  Aligned_cols=92  Identities=21%  Similarity=0.282  Sum_probs=71.6

Q ss_pred             CCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCC
Q psy535          342 KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG  421 (460)
Q Consensus       342 ~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (460)
                      +|.+|..+......+++.|.|.++.+++.+|++|.|+|+..+.                         ..|.....++..
T Consensus         8 ~P~pP~~~~~~~~~~sv~L~W~p~~dggsPI~~Y~I~yr~~~~-------------------------~~w~~~~~~~~~   62 (114)
T 2kbg_A            8 EPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDK-------------------------EDQWLEKKVQGN   62 (114)
T ss_dssp             CCCSCCEECCBCSTTCEEEEECCCCCSSSCCSEEEEEEEESSC-------------------------CSCCEEEEEETT
T ss_pred             CccCCcccccccCCCEEEEEEECCCCCCCcccEEEEEEEeCCC-------------------------CCcEEeEEcCCC
Confidence            5788877665544579999999988888899999999998532                         112222222346


Q ss_pred             cceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       422 ~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      .+.+.|.+|.|++.|+|||.|.|..|.|++|. ..++|
T Consensus        63 ~~~~~l~~L~p~t~Y~frV~A~N~~G~s~pS~-~~~~T   99 (114)
T 2kbg_A           63 KDHIILEHLQWTMGYEVQITAANRLGYSEPTV-YEFSM   99 (114)
T ss_dssp             TCCEEECCCCTTCCEEEEEEEECTTSCEEEEE-EEECC
T ss_pred             cCEEEEcCCCCCCEEEEEEEEEeCCcCcCCcC-CEEEc
Confidence            67899999999999999999999999999987 45665

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.63  E-value=3.9e-15  Score=126.37  Aligned_cols=169  Identities=14%  Similarity=0.205  Sum_probs=105.2

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--------------CCeecCccc--cccEEEeec----CeEEEe
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--------------DKRLLEPYQ--TKDIVVMQN----GSLLFT  117 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--------------~~~~~~~~~--~~~~~~~~~----~~l~i~  117 (460)
                      .+...|....+.+|++++|.| ..+.+.+ .+.|+|              ++.......  ..++....+    .+|.|.
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C-~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   81 (245)
T 4ei6_B            4 KVLQIPSHQIIDMGQMVTLNC-DPVSNHL-YFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ   81 (245)
T ss_dssp             CCEEECSEEEEETTCCEEEEE-ECCTTCC-EEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred             ceEeCCceEEecCCCCEEEEE-EcCCCCC-EEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence            455667778889999999999 5555554 799998              222111110  144444432    279999


Q ss_pred             ecCCCCCeEEEEEEEcCCC--CcceeeEEEEEee------CCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCC-ee
Q psy535          118 RVNQNHQGRYTCTPYNAHG--TQGSSGQMEVLVR------KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKP-TI  187 (460)
Q Consensus       118 ~~~~~d~G~y~C~~~~~~g--~~~~~~~~~v~v~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~-~~  187 (460)
                      +++.+|+|.|+|.+.+...  .........|.|.      .+|.+.+.+.....+..|+.++|.|.+   .+ .|.+ .+
T Consensus        82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~---~g~~p~~~~v  158 (245)
T 4ei6_B           82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA---TGFYPDHVEL  158 (245)
T ss_dssp             SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEE---EEEBSSCEEE
T ss_pred             CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEE---eeEeCCCeEE
Confidence            9999999999999985321  1112222334443      355554433222245569999999998   45 4545 89


Q ss_pred             EEEcCCCccCCcccEE----------------EecceEEEcccccee-ceEEEEEEecccce
Q psy535          188 TWQRRDGVALPKNRVK----------------IVGGNITIEGLRRVD-FGYYECVVSNEVAT  232 (460)
Q Consensus       188 ~W~~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~~-~g~y~C~a~n~~g~  232 (460)
                      .|+++ +..+......                .....|.|......| .|.|+|.+.|....
T Consensus       159 ~W~~~-g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          159 SWWVN-GKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             EEEET-TEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EEEEC-CEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence            99994 4443321110                111236777776667 89999999986544

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.63  E-value=2.3e-15  Score=128.77  Aligned_cols=129  Identities=16%  Similarity=0.214  Sum_probs=92.2

Q ss_pred             cccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCCC---cceeeeEEEEecC--------------CeeEEcce
Q psy535            7 SLETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIGE---PQAAQAYLNVEFP--------------AKVTFTPT   64 (460)
Q Consensus         7 ~~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~--------------p~~~~~~~   64 (460)
                      ...+|+++..++     +|.|.+++.+|+|.|+|.|.+..+.   .....+.|.|..+              +.+...|.
T Consensus        70 ~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~  149 (257)
T 3gkz_A           70 SLKSRISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPA  149 (257)
T ss_dssp             TTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCS
T ss_pred             cccccEEEEEecCCceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCc
Confidence            345788888653     7999999999999999999986221   1234567777654              45666677


Q ss_pred             eeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecCc----------cccccEEEeec---CeEEEeecCCCCCeEEEE
Q psy535           65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLEP----------YQTKDIVVMQN---GSLLFTRVNQNHQGRYTC  129 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~~----------~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C  129 (460)
                      ...+.+|++++|.|.+.+.+.+..+.|+|.  +..+..          ....++.....   .+|.|.+++.+|+|.|+|
T Consensus       150 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C  229 (257)
T 3gkz_A          150 IMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFC  229 (257)
T ss_dssp             EEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             eEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEE
Confidence            788999999999999998766547999983  222110          00133333222   259999999999999999


Q ss_pred             EEEcCC
Q psy535          130 TPYNAH  135 (460)
Q Consensus       130 ~~~~~~  135 (460)
                      .|.+..
T Consensus       230 ~~~~~~  235 (257)
T 3gkz_A          230 HQWSSF  235 (257)
T ss_dssp             EECSSS
T ss_pred             EEccCC
Confidence            998753

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.63  E-value=1.3e-15  Score=114.52  Aligned_cols=109  Identities=22%  Similarity=0.316  Sum_probs=79.5

Q ss_pred             CCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccce
Q psy535          327 DGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYR  405 (460)
Q Consensus       327 ~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (460)
                      .+..|..+.+... .+|.+|.++.+...+ +++.|+|+++.+++++|.+|.|+|+....                     
T Consensus         2 ~s~~s~~~~~~v~-~~P~~P~~~~~~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~---------------------   59 (127)
T 1uey_A            2 SSGSSGPTPAPVY-DVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMH---------------------   59 (127)
T ss_dssp             CCCCCCCCCCCCC-CSCCCCEEEEEECCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTT---------------------
T ss_pred             CCCCcEEEEEEee-cCCcCCCCcEEEEccCCEEEEEEECCCCCCCCceEEEEEEEECCC---------------------
Confidence            3344555555444 459999999998776 69999999987778899999999987431                     


Q ss_pred             ecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCce-eEeecC
Q psy535          406 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI-VVVKTK  460 (460)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~-~~~~T~  460 (460)
                        ....|..+.......+. .+.+|.|++.|.|||+|+|..|.|++|.. ..++|+
T Consensus        60 --~~~~w~~~~~~~~~~~~-~i~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~~T~  112 (127)
T 1uey_A           60 --KPGLWHHQTEVSGTQTT-AQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTK  112 (127)
T ss_dssp             --CTTCEEEEEEEESSCCE-EEECCCTTCEECCEEEEEESSCBCCCCSCCCCEECC
T ss_pred             --CCCccEEEeeeCCCceE-EEecCCCCCEEEEEEEEEeCCccCCccccccceEcC
Confidence              11123333222223344 57799999999999999999999999998 467764

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.63  E-value=8.3e-15  Score=122.93  Aligned_cols=176  Identities=15%  Similarity=0.173  Sum_probs=105.6

Q ss_pred             cceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC--------------ccccccEEEeec-----CeEEEeec
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE--------------PYQTKDIVVMQN-----GSLLFTRV  119 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~--------------~~~~~~~~~~~~-----~~l~i~~~  119 (460)
                      .|....+.+|++++|.|.+.+.+ ....+.|+|..  ....              .....++....+     .+|.|.++
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (232)
T 1dn0_B            6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV   85 (232)
T ss_dssp             EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence            34456788999999999998764 23479999842  2110              011245554432     27999999


Q ss_pred             CCCCCeEEEEEEEcCC--CC--cceeeEEEEEeeC----CCceee-CCCcccccCCC-CeEEEEeeeeccCCCCCC-eeE
Q psy535          120 NQNHQGRYTCTPYNAH--GT--QGSSGQMEVLVRK----PPAFTI-KPEAMYQRKVG-ESVDMHCEAQEAEGTQKP-TIT  188 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~~--g~--~~~~~~~~v~v~~----~p~~~~-~~~~~~~~~~g-~~~~l~C~~~~~~~~p~~-~~~  188 (460)
                      +.+|+|.|+|.+.+..  +.  ........|.|..    +|.+.. .+..  .+..| +.++|.|.+.  ...|.+ .+.
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~--~~~~g~~~v~L~C~~~--g~~P~p~~v~  161 (232)
T 1dn0_B           86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCE--NSPSDTSSVAVGCLAQ--DFLPDSITFS  161 (232)
T ss_dssp             CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC--------CCSEEEEEEEE--EEBSSCCEEE
T ss_pred             CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEecccc--ccCCCCCcEEEEEEEE--EEeCCCeEEE
Confidence            9999999999998321  11  1111223455543    344432 2222  24467 8999999983  334766 999


Q ss_pred             EEcCCCccCCcc---------cEEEecceEEEccccc--eeceEEEEEEecccceeeeeeEEEE
Q psy535          189 WQRRDGVALPKN---------RVKIVGGNITIEGLRR--VDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       189 W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~--~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      |++.++..+...         ......+.|.|.....  .|.|.|+|.+.|..+.......+.+
T Consensus       162 W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~  225 (232)
T 1dn0_B          162 WKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPV  225 (232)
T ss_dssp             EEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC
T ss_pred             EEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCC
Confidence            999333332210         0111223577777776  6789999999999887655554443

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.63  E-value=7.8e-14  Score=121.19  Aligned_cols=248  Identities=13%  Similarity=0.088  Sum_probs=137.2

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      .++-..+..|++++|.|.+.. +.  .|.|+++|.....        ..+++|.|.++...|+|.|+|.+   .+.....
T Consensus        12 ~~~~~~~~~G~~v~l~C~~~~-~~--~i~W~~~~~~~~~--------~~~~~L~i~~~~~~d~G~YtC~~---~~~~~~~   77 (306)
T 3d85_D           12 ELDWYPDAPGEMVVLTCDTPE-ED--GITWTLDQSSEVL--------GSGKTLTIQVKEFGDAGQYTCHK---GGEVLSH   77 (306)
T ss_dssp             EEECCSSCCCEEEEEECSSSC-CS--SCEEEETTCCCCC--------EESSEEEEEECSGGGCEEEEEEE---TTEEEEE
T ss_pred             eCCcccCccCCcEEEECCCCC-CC--cCEEEECCccccC--------CCCCEEEEEecCcCCCceEEEee---CCcccce
Confidence            333344567999999998873 22  6999999885421        25678999999999999999998   2444334


Q ss_pred             eEEEEEeeC----CCceeeCCCcccccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCCccCC-----------cccEEE-
Q psy535          142 GQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDGVALP-----------KNRVKI-  204 (460)
Q Consensus       142 ~~~~v~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~~~~~-----------~~~~~~-  204 (460)
                      +.+.|....    +..+...+..     .-....|.|..   ...+ .....|..+....+.           ...... 
T Consensus        78 ~~l~v~~~~~~~~~t~i~~~~~~-----pp~~~~lsC~~---~~~~~~~~C~W~pg~~~~l~~~~~~~r~~~~~~~~~C~  149 (306)
T 3d85_D           78 SLLLLHKKEDGIWSTDILKDQKE-----PKNKTFLRCEA---KNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCG  149 (306)
T ss_dssp             EEEEEEEEETTEECCCSSCCCC--------CCCCCEEEB---SSSSSEEEEEEEESCCSSEEEEEEEEECSSSCEEEEEC
T ss_pred             EEEEEEeccCCcceeeeecccCC-----CCCCCcceEEc---CCcccCcEEEecCCCCCceeEEEEEEecCCCCcceECC
Confidence            444433210    0111111000     00122445544   2222 334445442221110           000000 


Q ss_pred             ----ecceEEEcccc-----------------ceeceEEEEEEecccceeeeeeEEEE-ecCCCCCCCceeeee-e-cce
Q psy535          205 ----VGGNITIEGLR-----------------RVDFGYYECVVSNEVATIVQAAQLVV-EGTQPHAPYNITGVA-T-EFS  260 (460)
Q Consensus       205 ----~~~~l~i~~~~-----------------~~~~g~y~C~a~n~~g~~~~~~~l~v-~~~~p~~p~~~~~~~-~-~~~  260 (460)
                          ....+.+.+..                 ....+.++|.|.|..|.......+.+ ....|.||.++.... . ...
T Consensus       150 ~~~~~~~~c~v~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~~~f~~~~iVkPdPP~~l~~~~~~~~~~  229 (306)
T 3d85_D          150 AATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQ  229 (306)
T ss_dssp             CCEEEEEEEC--CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEEEEECHHHHBCCCCCEEEEEEEC----C
T ss_pred             CCCCCccceeecCccccceeeeeeccccccccccEEEEEEEEEEccCCccccceEEEehhcEecCCCceEEEEEecCCCc
Confidence                00111111111                 11346678999999997655544432 124688898887654 2 368


Q ss_pred             EEEEeecCCCCCCC---ceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEEE
Q psy535          261 VTLEWLPGYSGGPD---LKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV  336 (460)
Q Consensus       261 ~~l~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~~  336 (460)
                      +.|+|.++...+.+   ....|.+.|+..+...|......  ....+.|.   ++..|.++++|.|..|.|.+|.....
T Consensus       230 l~vsW~~P~~~~~p~~~~~L~Y~vryr~~~~~~~~~~~~~--~~ts~~l~---~~~~Y~vqVRa~~~~~~G~WSeWS~~  303 (306)
T 3d85_D          230 VEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFT--DKTSATVI---CRKNASISVRAQDRYYSSSWSEWASV  303 (306)
T ss_dssp             EEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEE--SSSEEEEC---CCSSCEEEEEEEESSSCCCCCCCEEE
T ss_pred             EEEEEcCCCCCcCCCceeeEEEEEEEEECCCCccEEEeec--cccEEEEe---CCCeEEEEEEeccCCCCCCCCCCCCC
Confidence            99999987543321   23689999998776555443322  33456663   58999999999999888888876543

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.63  E-value=4.4e-15  Score=124.42  Aligned_cols=168  Identities=16%  Similarity=0.211  Sum_probs=106.0

Q ss_pred             ceeeeecceeeEEEEEEEecCCC-C--CeEEEeeCC--eecC--------------ccccccEEEee-----cCeEEEee
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPT-F--QYVTWTKDK--RLLE--------------PYQTKDIVVMQ-----NGSLLFTR  118 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~-~--~~v~W~~~~--~~~~--------------~~~~~~~~~~~-----~~~l~i~~  118 (460)
                      |....+.+|++++|.|.+.+.+. .  ..+.|+|..  ..+.              .....++.+..     +.+|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            55567889999999999988753 1  479999842  2210              01124555443     24799999


Q ss_pred             cCCCCCeEEEEEEEcCCC------Cc-ceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCC-
Q psy535          119 VNQNHQGRYTCTPYNAHG------TQ-GSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKP-  185 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~g------~~-~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~-  185 (460)
                      ++.+|+|.|+|.+.+..|      .. .......|.|.    .+|.+...+... .+..|+.++|.|.+   .+. |.+ 
T Consensus        87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~-~~~~g~~~~l~C~~---~g~~P~p~  162 (228)
T 3bae_H           87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVC-GDTTGSSVTLGCLV---KGYFPEPV  162 (228)
T ss_dssp             CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC------CCSEEEEEEEE---EEEBSSCC
T ss_pred             CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccc-cccCCCCEEEEEEE---ccEeCCCE
Confidence            999999999999988654      10 11112344454    245544333222 35689999999998   454 777 


Q ss_pred             eeEEEcCCCccCCc---ccEE-----EecceEEEccccceeceEEEEEEecccceeeee
Q psy535          186 TITWQRRDGVALPK---NRVK-----IVGGNITIEGLRRVDFGYYECVVSNEVATIVQA  236 (460)
Q Consensus       186 ~~~W~~~~~~~~~~---~~~~-----~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  236 (460)
                      .+.|++++.. ...   ....     ...+.|.|.....++ |.|+|.|.|..+.....
T Consensus       163 ~v~W~~~~~~-~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~  219 (228)
T 3bae_H          163 TLTWNSGSLS-SGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD  219 (228)
T ss_dssp             EEEEGGGTCC-TTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             EEEEeeCCcc-cCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence            9999985442 211   0010     123357888777755 99999999998875433

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.63  E-value=1.4e-14  Score=120.68  Aligned_cols=164  Identities=11%  Similarity=0.120  Sum_probs=104.1

Q ss_pred             ceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eec-----------------CccccccEEEeecC-----eEEEe
Q psy535           63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLL-----------------EPYQTKDIVVMQNG-----SLLFT  117 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~-----------------~~~~~~~~~~~~~~-----~l~i~  117 (460)
                      |....+.+|++++|.|.+.+.+ ....+.|+|..  ...                 ......++....+.     +|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   86 (221)
T 3m8o_H            7 SGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMN   86 (221)
T ss_dssp             ESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEEC
Confidence            4456688999999999998743 23479999732  111                 01112455544332     59999


Q ss_pred             ecCCCCCeEEEEEEEcCCCCcceeeEEEEEee----CCCcee-eCCCcccccCCCCeEEEEeeeeccCCCCC--CeeEEE
Q psy535          118 RVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR----KPPAFT-IKPEAMYQRKVGESVDMHCEAQEAEGTQK--PTITWQ  190 (460)
Q Consensus       118 ~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~----~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~p~--~~~~W~  190 (460)
                      +++.+|+|.|+|.+.+............|.|.    .+|.+. ..+..  . ..|+.++|.|.+.  ...|.  +.+.|+
T Consensus        87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~--~-~~g~~v~L~C~~~--~~~P~~~~~v~W~  161 (221)
T 3m8o_H           87 SLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCS--T-QPDGNVVIACLVQ--GFFPQEPLSVTWS  161 (221)
T ss_dssp             SCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCS--C-CCTTEEEEEEEEE--EEBSSCSEEEEES
T ss_pred             CCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCcc--c-ccCCCEEEEEEEE--eeECCCCEEEEEE
Confidence            99999999999999886311111222234443    234443 22322  2 6799999999994  22665  489999


Q ss_pred             cCCCccC----------CcccEEEecceEEEccccceeceEEEEEEecccce
Q psy535          191 RRDGVAL----------PKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       191 ~~~~~~~----------~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      +++..+.          ....+. ..+.|.|......|.|.|+|.+.+..+.
T Consensus       162 ~~g~~~~~~~~~~~~~~~~~~~~-~~s~L~i~~~~~~d~g~ytC~v~~~~~~  212 (221)
T 3m8o_H          162 ESGQGVTARNFPPSQDASGDLYT-TSSQLTLPATQCLAGKSVTCHVKHYTNP  212 (221)
T ss_dssp             CCSTTCEEEECCCEECSSSSCEE-EEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred             ECCEECceEEcCceeeCCCCcEE-EEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence            8543321          111222 2235888888888999999999998654

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.63  E-value=1.9e-15  Score=127.94  Aligned_cols=127  Identities=19%  Similarity=0.286  Sum_probs=88.6

Q ss_pred             ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe-------------eEEcceeeeecce
Q psy535            8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK-------------VTFTPTVQYLPFR   71 (460)
Q Consensus         8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-------------~~~~~~~~~~~~g   71 (460)
                      .++|+.+..++   +|.|.+++.+|+|.|+|.+.|..+......+.|.|..++.             ....+....+.+|
T Consensus        58 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G  137 (242)
T 2znx_A           58 IPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPS  137 (242)
T ss_dssp             SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTT
T ss_pred             CCCCEEEecCCCEEEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCC
Confidence            35788886543   8999999999999999999987553323456788876542             2233444568899


Q ss_pred             eeEEEEEEEecCCC-CCeEEEeeC--CeecC--------------ccccccEEEeec-----CeEEEeecCCCCCeEEEE
Q psy535           72 LQGVVQCHIKANPT-FQYVTWTKD--KRLLE--------------PYQTKDIVVMQN-----GSLLFTRVNQNHQGRYTC  129 (460)
Q Consensus        72 ~~~~l~C~~~~~~~-~~~v~W~~~--~~~~~--------------~~~~~~~~~~~~-----~~l~i~~~~~~d~G~y~C  129 (460)
                      ++++|.|.+.+.+. .+.+.|+|+  +..+.              +....++....+     .+|.|.+++.+|+|.|+|
T Consensus       138 ~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  217 (242)
T 2znx_A          138 QTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYC  217 (242)
T ss_dssp             SCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEE
Confidence            99999999988752 347999994  32221              001234444322     379999999999999999


Q ss_pred             EEEcC
Q psy535          130 TPYNA  134 (460)
Q Consensus       130 ~~~~~  134 (460)
                      .|.|.
T Consensus       218 ~a~~~  222 (242)
T 2znx_A          218 ANXDG  222 (242)
T ss_dssp             EETTS
T ss_pred             eccCC
Confidence            99873

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.63  E-value=5e-16  Score=130.21  Aligned_cols=164  Identities=18%  Similarity=0.221  Sum_probs=104.3

Q ss_pred             EcceeeeecceeeEEEEEEEecC-CC-CCeEEEeeCCeec-CccccccEEEee------cCeEEEeecCCCCCeEEEEEE
Q psy535           61 FTPTVQYLPFRLQGVVQCHIKAN-PT-FQYVTWTKDKRLL-EPYQTKDIVVMQ------NGSLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~v~W~~~~~~~-~~~~~~~~~~~~------~~~l~i~~~~~~d~G~y~C~~  131 (460)
                      ..|....+.+|++++|.|.+.+. |. +..|+|+++|..+ ... ........      ...|.|.++..+|+|.|+|.|
T Consensus        18 ~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~-~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~   96 (231)
T 2w59_A           18 IPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPD-PMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTV   96 (231)
T ss_dssp             ECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCC-CCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEE
T ss_pred             eCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccc-cccceECCCCcEEEEEEEEecchhccCCCEEEEEE
Confidence            45555567789999999999985 43 2489999999877 321 11111112      235999999999999999999


Q ss_pred             EcCCCCcceeeEEEEEe----eCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CC-CCeeEEEcCCCccCCccc-E--
Q psy535          132 YNAHGTQGSSGQMEVLV----RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQ-KPTITWQRRDGVALPKNR-V--  202 (460)
Q Consensus       132 ~~~~g~~~~~~~~~v~v----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p-~~~~~W~~~~~~~~~~~~-~--  202 (460)
                      .+..+...  ..+.|.+    ..+|.+.+.+.....+ .+..++|.|.+   .+ .| .+.+.|++++ ..+.... .  
T Consensus        97 ~~~~~~~~--~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~---~g~~P~~~~v~W~k~g-~~l~~~~~~~~  169 (231)
T 2w59_A           97 QHEELPLP--LSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLV---RGFRPRDIEIRWLRDH-RAVPATEFVTT  169 (231)
T ss_dssp             ECTTCSSC--EEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEE---EEEBSSCCEEEEEETT-EECCGGGCEEC
T ss_pred             EcCCCCCc--eEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEE---EeccCCCcEEEEEECC-EECCCcccccC
Confidence            98775432  2333322    2456655443222123 34579999999   45 34 4799999954 4443221 1  


Q ss_pred             --EE---------ec-c------eEEEccccceeceEEEEEEecccce
Q psy535          203 --KI---------VG-G------NITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       203 --~~---------~~-~------~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                        ..         .+ +      .|.|......|.|.|+|.|.|....
T Consensus       170 ~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          170 AVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             CCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             ccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence              11         12 2      3566666666799999999987644

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.62  E-value=1e-15  Score=121.45  Aligned_cols=111  Identities=16%  Similarity=0.278  Sum_probs=82.0

Q ss_pred             ccceEEEe-eCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe---eEEcceeeeecceeeEEEEEEEecC
Q psy535            8 LETRVVIK-KDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK---VTFTPTVQYLPFRLQGVVQCHIKAN   83 (460)
Q Consensus         8 ~~~r~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~---~~~~~~~~~~~~g~~~~l~C~~~~~   83 (460)
                      ..+|+.+. .+|+|.|.+++.+|+|.|+|.|.+..|   ...+.|.|..++.   +.....        ...|.|.+.+.
T Consensus        49 ~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~---~~~~~L~V~~~~~~p~i~~~~~--------~~~L~C~~~~~  117 (171)
T 1ccz_A           49 FKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD---TMKFFLYVLEMVSKPMIYWECS--------NATLTCEVLEG  117 (171)
T ss_dssp             GTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCS---CEEEEEEEECCCCCCEEEEETT--------TTEEEEECSSC
T ss_pred             cCCcEEEeCCCCeEEECCCChhhCceEEEEEeCCCC---cEEEEEEEECcCCCCEEEEecC--------CcEEEEEeCCC
Confidence            45688885 568999999999999999999998776   5678888876532   221111        13799999987


Q ss_pred             CCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535           84 PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS  140 (460)
Q Consensus        84 ~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~  140 (460)
                      |.+ .++|++++..+...        ....|.+.  ...|+|.|+|.|.|..+....
T Consensus       118 p~p-~i~W~~~~~~l~~~--------~~~~l~~~--~~~~~g~Y~C~a~N~~~~~~~  163 (171)
T 1ccz_A          118 TDV-ELKLYQGKEHLRSL--------RQKTMSYQ--WTNLRAPFKCKAVNRVSQESE  163 (171)
T ss_dssp             SSC-EEEEEETTEEEEEE--------SSSEEEEE--CSCCSSCEEEEEEETTEEEEE
T ss_pred             CCc-EEEEEECCEECcCC--------cceEEEEe--ccCCCceEEEEEEcccCcccc
Confidence            765 89999999887521        11234433  378899999999999887543

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.62  E-value=1.3e-15  Score=127.06  Aligned_cols=129  Identities=14%  Similarity=0.165  Sum_probs=90.2

Q ss_pred             cceEEEeeC---C--eEEEeecCCCCCeeEEEEEEeCCCCc--ceeeeEEEEec----CCeeEEcceeeeecceeeEEEE
Q psy535            9 ETRVVIKKD---G--TLVINPVGSDDSGLYMCEVSNGIGEP--QAAQAYLNVEF----PAKVTFTPTVQYLPFRLQGVVQ   77 (460)
Q Consensus         9 ~~r~~~~~~---~--~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~   77 (460)
                      .+|+.+..+   +  +|.|.+++.+|+|.|+|.+.+..+..  ....+.|.|..    +|.+...+....+.+|+.++|.
T Consensus        67 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~  146 (220)
T 1pz5_B           67 KGRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLG  146 (220)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEE
T ss_pred             CCcEEEEEeCCCCeEEEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEE
Confidence            579998753   2  89999999999999999999875431  12456777762    4555444433345679999999


Q ss_pred             EEEecC-CCCCeEEEeeCCeecCccccccE----EEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           78 CHIKAN-PTFQYVTWTKDKRLLEPYQTKDI----VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        78 C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      |.+.+. |.+..|+|++++...........    .....+.|.|.++..+| |.|+|.|.|..|..
T Consensus       147 C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  211 (220)
T 1pz5_B          147 CLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKV  211 (220)
T ss_dssp             EEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTE
T ss_pred             EEEEEEeCCCeEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccE
Confidence            999987 55438999998874210000110    11223568898888766 99999999988754

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.62  E-value=2.5e-15  Score=125.12  Aligned_cols=129  Identities=17%  Similarity=0.230  Sum_probs=92.7

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEec----CCeeEEcceeeeecceeeEEE
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQGVV   76 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l   76 (460)
                      ..+|+.+..+     .+|.|.+++.+|+|.|.|.+.+..+.  .....+.|.|..    +|.+...+ ...+.+|+.++|
T Consensus        64 ~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L  142 (220)
T 2fbj_H           64 LKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVII  142 (220)
T ss_dssp             TTTTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEE
T ss_pred             cCCcEEEEeeCCCCEEEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEE
Confidence            4589999864     38999999999999999999987542  112346788864    45555444 334568999999


Q ss_pred             EEEEecC-CC-CCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           77 QCHIKAN-PT-FQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        77 ~C~~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      .|.+.+. |. ++.|.|++++..+....... ....+      +.|.|......|+|.|+|.|.|..+..
T Consensus       143 ~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~-~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~  211 (220)
T 2fbj_H          143 GCLIHDYFPSGTMNVTWGKSGKDITTVNFPP-ALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV  211 (220)
T ss_dssp             EEEEEEEBSCCCEEEEESCCCSSCEEEECCC-EECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred             EEEEEeEECCCcEEEEEecCCEecceEecCc-eECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCce
Confidence            9999987 54 35899999987652111111 11122      248888888899999999999988765

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.62  E-value=3.2e-16  Score=132.14  Aligned_cols=131  Identities=18%  Similarity=0.152  Sum_probs=91.4

Q ss_pred             ccceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEe----cCCeeEEcceeeeecceeeEEEEE
Q psy535            8 LETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQGVVQC   78 (460)
Q Consensus         8 ~~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C   78 (460)
                      ..+|+.+..+   ++|.|.+++.+|+|.|+|.|.+..+.  .....+.|.|.    .+|.+...+......+|++++|.|
T Consensus        78 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C  157 (234)
T 2j6e_L           78 VPDRFSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVC  157 (234)
T ss_dssp             SCTTEEEEEETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEE
T ss_pred             ccccEEEEecCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEE
Confidence            3578887653   38999999999999999999998762  22334566663    355555444333334588999999


Q ss_pred             EEecCCCC-CeEEEeeCCeecCcccc-ccEEEe------ecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           79 HIKANPTF-QYVTWTKDKRLLEPYQT-KDIVVM------QNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        79 ~~~~~~~~-~~v~W~~~~~~~~~~~~-~~~~~~------~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      .+.+.+++ ..|+|+|+|..+..... ......      ..+.|.|.++..+|+|.|+|.|.|.....
T Consensus       158 ~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  225 (234)
T 2j6e_L          158 LISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV  225 (234)
T ss_dssp             CCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCC
T ss_pred             EEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCce
Confidence            99986443 48999999998753210 000001      11358899999999999999999976653

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.62  E-value=5.4e-15  Score=128.12  Aligned_cols=126  Identities=14%  Similarity=0.237  Sum_probs=92.8

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC----cceeeeEEEEecC---------------CeeEEcc
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE----PQAAQAYLNVEFP---------------AKVTFTP   63 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~---------------p~~~~~~   63 (460)
                      ..+|+++..+     ++|.|.+++.+|+|.|+|.+.|..|.    .....+.|.|..+               +.+...|
T Consensus        90 ~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p  169 (282)
T 1qok_A           90 FQGKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSP  169 (282)
T ss_dssp             GBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEEC
T ss_pred             hcCcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCC
Confidence            3589988763     48999999999999999999998651    1123457888754               3355567


Q ss_pred             eeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecCc----------cccccEEEee---cCeEEEeecCCCCCeEEE
Q psy535           64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLEP----------YQTKDIVVMQ---NGSLLFTRVNQNHQGRYT  128 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~~----------~~~~~~~~~~---~~~l~i~~~~~~d~G~y~  128 (460)
                      ....+.+|++++|.|.+.+.+ + .+.|+|  ++..+..          ....++....   ..+|.|.+++.+|+|.|+
T Consensus       170 ~~~~v~~G~~v~L~C~~~~~~-~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~  247 (282)
T 1qok_A          170 AIMSASPGEKVTITCSASSSV-S-YMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYY  247 (282)
T ss_dssp             SEEEECTTCCEEEEEEESSCC-S-CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CEEEEcCCCcEEEEEEecCCC-c-eEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEE
Confidence            777889999999999999887 4 799999  5554310          0123343322   236999999999999999


Q ss_pred             EEEEcCC
Q psy535          129 CTPYNAH  135 (460)
Q Consensus       129 C~~~~~~  135 (460)
                      |.|.+..
T Consensus       248 C~a~~~~  254 (282)
T 1qok_A          248 CQQRSSY  254 (282)
T ss_dssp             EEECSSS
T ss_pred             EEEeeCC
Confidence            9998753

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}

Probab=99.62  E-value=4e-15  Score=108.28  Aligned_cols=92  Identities=28%  Similarity=0.467  Sum_probs=75.5

Q ss_pred             CCCCCCcceEEEe--ec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535          341 PKPGPPRNVSVTE--VN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV  417 (460)
Q Consensus       341 ~~P~~p~~~~~~~--~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (460)
                      ..|.+|.++++..  .+ +++.|+|++|...++.|.+|.|+|+..+.                         ..|.... 
T Consensus         6 ~~P~~P~~l~~~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~-------------------------~~~~~~~-   59 (108)
T 2dm4_A            6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGS-------------------------KMWASQR-   59 (108)
T ss_dssp             CCTTSCEEEEEECCTTCSSCEEEEEECCSCCSSCEEEEEEEEEETTC-------------------------SCCEEEE-
T ss_pred             CCCcCCcCeEEEEeccCCCEEEEEEcCCCCCCCcEEEEEEEEEECCC-------------------------CCeEEec-
Confidence            4588999998876  23 69999999998778899999999997543                         1122221 


Q ss_pred             CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                        ...+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus        60 --~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  100 (108)
T 2dm4_A           60 --AASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTI  100 (108)
T ss_dssp             --ESSSEEEECSCCSSCEEEEEEEEEESSCEEEECCCEEEECC
T ss_pred             --CCccEEEeCCCCCCCEEEEEEEEECCCceeCCCCCEEEECC
Confidence              24568999999999999999999999999999999999884

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.62  E-value=2.1e-15  Score=112.75  Aligned_cols=108  Identities=23%  Similarity=0.373  Sum_probs=83.1

Q ss_pred             CCcEEEEccCCCCC-CCcceEEEeec-ceEEEEecCCCC--CCccceEEEEEEEEcCCeeeeccccCCCCccccccccee
Q psy535          331 SNIVVVKTKGPKPG-PPRNVSVTEVN-NGFVISWQPPLE--RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYRE  406 (460)
Q Consensus       331 s~~~~~~~~~~~P~-~p~~~~~~~~~-~~v~l~W~~~~~--~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (460)
                      |..+.+++....|. +|.++++...+ +++.|+|++|..  .++.+.+|.|+|+..+...                    
T Consensus         3 S~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~--------------------   62 (122)
T 1va9_A            3 SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGS--------------------   62 (122)
T ss_dssp             CCCCSSCSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTS--------------------
T ss_pred             CCCEEEECCCCCCCCCCcceEEEeccCCEEEEEEeCCCCcCCCCcEeEEEEEEEECCCCC--------------------
Confidence            44556667777775 89999998876 699999999976  5789999999999865300                    


Q ss_pred             cCceeeeeec-cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          407 QGNKDWLPIP-VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       407 ~~~~~~~~~~-~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                        ...|.... ......+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus        63 --~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  115 (122)
T 1va9_A           63 --NGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTL  115 (122)
T ss_dssp             --CCSCBCCBCCCCSSEEEEEEESCCSSCCEEEEEEEEETTEECCCCCCEECCCC
T ss_pred             --CcceEEEEEecCCceeEEEeCCCCCCCEEEEEEEEEcCCCCCCCccCEEEEeC
Confidence              00111111 11234678999999999999999999999999999999999884

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=3.5e-15  Score=108.22  Aligned_cols=93  Identities=20%  Similarity=0.343  Sum_probs=77.2

Q ss_pred             CCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccC
Q psy535          340 GPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT  418 (460)
Q Consensus       340 ~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (460)
                      ..+|.+|.++++...+ +++.|+|++|...++.+.+|.|+|+..+..                         .|..+.  
T Consensus         5 ~~~P~~P~~l~~~~~~~~si~l~W~~p~~~~g~i~~Y~v~~~~~~~~-------------------------~~~~~~--   57 (106)
T 2ed8_A            5 SSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTG-------------------------KEQNIE--   57 (106)
T ss_dssp             CCCCCCCEEEEEECSSTTEEEEEEECCSSCSSCCCEEEEEEEETTTC-------------------------CEEEEE--
T ss_pred             CCCCcCCceeEEEecCCCEEEEEECCCCCCCCCeeEEEEEEEECCCC-------------------------ceEEEe--
Confidence            3568999999998876 699999999987778999999999976531                         111121  


Q ss_pred             CCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          419 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       419 ~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                       ...+++.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus        58 -~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~   98 (106)
T 2ed8_A           58 -VDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTL   98 (106)
T ss_dssp             -ECSSCEEEESCCTTCEEEEEEEEECSSCEEEECCCEEEECC
T ss_pred             -CCccEEEECCCCCCCEEEEEEEEEeCCccCCCcCCEEEEcC
Confidence             13578999999999999999999999999999999999884

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.62  E-value=8.1e-15  Score=123.98  Aligned_cols=170  Identities=13%  Similarity=0.152  Sum_probs=105.7

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--------------CeecC-ccccccEEEee----cCeEEEee
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--------------KRLLE-PYQTKDIVVMQ----NGSLLFTR  118 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--------------~~~~~-~~~~~~~~~~~----~~~l~i~~  118 (460)
                      .+...|....+.+|++++|.|.+.+ +.+ .+.|+|.              +.... .....++....    +.+|.|.+
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~   81 (240)
T 3q5y_A            4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHS-NVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA   81 (240)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCT-TCC-EEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECS
T ss_pred             ccccCcceeeecCCCcEEEEEEeCC-CCc-eEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECc
Confidence            3455677788899999999999876 443 7999982              11111 01123444443    23699999


Q ss_pred             cCCCCCeEEEEEEEcCCC-CcceeeEEEEEee------CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEE
Q psy535          119 VNQNHQGRYTCTPYNAHG-TQGSSGQMEVLVR------KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQ  190 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~g-~~~~~~~~~v~v~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~  190 (460)
                      ++.+|+|.|+|.+.+..+ .........|.|.      .+|.+.+.+.....+..|+.++|.|.+.  ...|.+ .+.|+
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~--g~~P~~~~v~W~  159 (240)
T 3q5y_A           82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLAR--GFFPDHVELSWW  159 (240)
T ss_dssp             CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEE--EEBSSCEEEEEE
T ss_pred             CChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEe--eEECCCeEEEEE
Confidence            999999999999973211 1112222233333      4555554332222456689999999983  225656 79999


Q ss_pred             cCCCccCCccc------EEEec------ceEEEcccccee-ceEEEEEEecccce
Q psy535          191 RRDGVALPKNR------VKIVG------GNITIEGLRRVD-FGYYECVVSNEVAT  232 (460)
Q Consensus       191 ~~~~~~~~~~~------~~~~~------~~l~i~~~~~~~-~g~y~C~a~n~~g~  232 (460)
                      +++ ..+....      ....+      ..|.|......| .|.|+|.+.|....
T Consensus       160 ~~g-~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          160 VNG-KEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             ETT-EEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             ECC-EECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            954 4432211      11112      237777777777 67999999986544

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.62  E-value=6.3e-15  Score=125.96  Aligned_cols=128  Identities=16%  Similarity=0.200  Sum_probs=88.5

Q ss_pred             ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEecCCe--------------------eEEc
Q psy535            8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVEFPAK--------------------VTFT   62 (460)
Q Consensus         8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~p~--------------------~~~~   62 (460)
                      ..+|+.+..++   +|.|.+++.+|+|.|+|.+.+..+.  .....+.|.|..++.                    ....
T Consensus        61 ~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (256)
T 3ux9_B           61 VPDRFSGSKSGTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE  140 (256)
T ss_dssp             CCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEE
T ss_pred             cCCcEEEEccCCEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc
Confidence            45788887654   8999999999999999999986542  123456777765441                    1223


Q ss_pred             ceeeeecceeeEEEEEEEecCCC-CCeEEEeeC--CeecC---------------ccccccEEEeecC-----eEEEeec
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKD--KRLLE---------------PYQTKDIVVMQNG-----SLLFTRV  119 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~~-----~l~i~~~  119 (460)
                      +....+.+|++++|.|.+.+.+. .+.+.|+|+  +..+.               .....++....++     +|.|.++
T Consensus       141 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v  220 (256)
T 3ux9_B          141 SGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSL  220 (256)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCC
Confidence            33455889999999999988652 348999986  32221               0112244444332     4999999


Q ss_pred             CCCCCeEEEEEEEcCC
Q psy535          120 NQNHQGRYTCTPYNAH  135 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~~  135 (460)
                      +.+|+|.|+|.|.|..
T Consensus       221 ~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          221 RAEDTAVYYCARYIDF  236 (256)
T ss_dssp             CGGGCEEEEEEEEETT
T ss_pred             ChhhCEEEEEEEEcCC
Confidence            9999999999999853

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.62  E-value=2.8e-15  Score=128.06  Aligned_cols=129  Identities=19%  Similarity=0.188  Sum_probs=91.1

Q ss_pred             ccceEEEee-----CCeEEEeecCCCCCeeEEEEEEeCCCCc---ceeeeEEEEec--------------------CCee
Q psy535            8 LETRVVIKK-----DGTLVINPVGSDDSGLYMCEVSNGIGEP---QAAQAYLNVEF--------------------PAKV   59 (460)
Q Consensus         8 ~~~r~~~~~-----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~~l~v~~--------------------~p~~   59 (460)
                      .++|+.+..     +++|.|.+++.+|+|.|+|.+.+..+..   ....+.|.|..                    ++.+
T Consensus        61 ~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v  140 (256)
T 3tf7_C           61 GVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAV  140 (256)
T ss_dssp             CSTTCEEEEETTTTEEEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCE
T ss_pred             cCCCeEEEEcCCCCEEEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEE
Confidence            356777742     2389999999999999999999875421   12345777764                    5567


Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eecCc-------------cccccEEEe----ecCeEEEeecC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLLEP-------------YQTKDIVVM----QNGSLLFTRVN  120 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~~-------------~~~~~~~~~----~~~~l~i~~~~  120 (460)
                      ...|....+.+|++++|.|.+.+. . +.+.|+|..  .....             ....++...    ...+|.|.+++
T Consensus       141 ~~~p~~~~v~~G~~v~L~C~~~~~-~-~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~  218 (256)
T 3tf7_C          141 TQSPRNKVTVTGENVTLSCRQTNS-H-NYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESAS  218 (256)
T ss_dssp             EESCSEEEEETTCCEEECEEECSC-C-SEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCC
T ss_pred             EecCCEEEEeCCCcEEEEEEcCCC-c-eEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCC
Confidence            777888888899999999999876 3 379999832  11100             001222222    12369999999


Q ss_pred             CCCCeEEEEEEEcCCCCc
Q psy535          121 QNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus       121 ~~d~G~y~C~~~~~~g~~  138 (460)
                      .+|+|.|+|.|.|..|..
T Consensus       219 ~~DsG~Y~C~a~n~~g~~  236 (256)
T 3tf7_C          219 PSQTSLYFCASSDAPGQL  236 (256)
T ss_dssp             GGGCEEEEEEEEEETTEE
T ss_pred             HHHCEEEEEEecCCCCcc
Confidence            999999999999876644

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.61  E-value=3e-15  Score=110.06  Aligned_cols=97  Identities=23%  Similarity=0.318  Sum_probs=75.2

Q ss_pred             CCCCCCcceEEEeec-ceEEEEecCCC--CCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535          341 PKPGPPRNVSVTEVN-NGFVISWQPPL--ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV  417 (460)
Q Consensus       341 ~~P~~p~~~~~~~~~-~~v~l~W~~~~--~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (460)
                      .+|.+|.++++...+ ++|.|+|++|.  ..++.|.+|.|+|+..+...                      ...|... .
T Consensus         7 ~P~~~P~~~~~~~~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~----------------------~~~~~~~-~   63 (114)
T 1x4y_A            7 GPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDN----------------------DSDYKKD-M   63 (114)
T ss_dssp             SCCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCS----------------------GGGCCCE-E
T ss_pred             CCCCCCeEEEEEecCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCC----------------------CcceeeE-e
Confidence            346899999998876 69999999986  35789999999998654300                      0011100 1


Q ss_pred             CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      .....+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|+
T Consensus        64 ~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~T~  106 (114)
T 1x4y_A           64 VEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETK  106 (114)
T ss_dssp             EETTCCEEEECSCCTTCEEEEEEEEECTTCCCCCCCCEEEECC
T ss_pred             cCCcEeEEEcCCCCCCCEEEEEEEEEcCCccCCCcCCEEEEeC
Confidence            1134578999999999999999999999999999999999985

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.61  E-value=2.7e-15  Score=111.86  Aligned_cols=107  Identities=22%  Similarity=0.492  Sum_probs=82.6

Q ss_pred             CCCCCCCCcEEEEccCCCCCCCcce--EEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCccccc
Q psy535          325 LGDGMLSNIVVVKTKGPKPGPPRNV--SVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL  401 (460)
Q Consensus       325 ~G~~~~s~~~~~~~~~~~P~~p~~~--~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~  401 (460)
                      +|....+..+.+.   .+|.+|.++  .+...+ +++.|+|.+|.++++++.+|.|+|+..+.                 
T Consensus         3 ~G~~~~s~~l~v~---~~P~~P~~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~-----------------   62 (121)
T 1wf5_A            3 SGSSGRSAHLRVR---QLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNA-----------------   62 (121)
T ss_dssp             CCCCCCCCCSSCC---CCCCCCSSCEEEECSSSTTEEEEECCCCCCCSSCEEEEEEEEECTTC-----------------
T ss_pred             CCcccceEEEEEe---eCCccCCCcceeeEeccCCEEEEEEcCCCCCCCcceEEEEEEEcCCC-----------------
Confidence            4656666666655   348899999  676665 69999999997777899999999996531                 


Q ss_pred             ccceecCceeeeee-ccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee-EeecC
Q psy535          402 GEYREQGNKDWLPI-PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTK  460 (460)
Q Consensus       402 ~~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~-~~~T~  460 (460)
                               .|..+ .......+.++|.+|.|++.|.|||+|+|..|.|++|... .++|+
T Consensus        63 ---------~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~~t~  114 (121)
T 1wf5_A           63 ---------PWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLP  114 (121)
T ss_dssp             ---------CCEEEESSCCTTCCEEEEESCCTTCEEEEEEEEEESSCEEEECCCCSCEECC
T ss_pred             ---------CceEeEcccCCCccEEEECCcCCCCEEEEEEEEEcCCccCCCcCCcceeEcC
Confidence                     23333 2233567889999999999999999999999999999886 46653

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.61  E-value=6.4e-15  Score=122.87  Aligned_cols=131  Identities=12%  Similarity=0.190  Sum_probs=91.3

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCC---C--cceeeeEEEEec----CCeeEEcceeeeecceee
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIG---E--PQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQ   73 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~---~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~   73 (460)
                      ..+|+.+..+     .+|.|.+++.+|+|.|+|.+.+..+   .  .....+.|.|..    +|.+...+....+.+|+.
T Consensus        64 ~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~  143 (223)
T 1dee_B           64 VKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSST  143 (223)
T ss_dssp             TBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSE
T ss_pred             cCCeEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCc
Confidence            4689999764     3899999999999999999998653   1  112345788863    444443222223467899


Q ss_pred             EEEEEEEecC-CCCCeEEEee-CCeecCccc-------cccEEEeecCeEEEeecCC--CCCeEEEEEEEcCCCCcce
Q psy535           74 GVVQCHIKAN-PTFQYVTWTK-DKRLLEPYQ-------TKDIVVMQNGSLLFTRVNQ--NHQGRYTCTPYNAHGTQGS  140 (460)
Q Consensus        74 ~~l~C~~~~~-~~~~~v~W~~-~~~~~~~~~-------~~~~~~~~~~~l~i~~~~~--~d~G~y~C~~~~~~g~~~~  140 (460)
                      ++|.|.+.+. |.+..++|++ +|..+....       ...+  ...+.|.|.....  +|.|.|+|.|.|..+....
T Consensus       144 v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~--~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~  219 (223)
T 1dee_B          144 VAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKY--AATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEK  219 (223)
T ss_dssp             EEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEE--EEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEE
T ss_pred             EEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeE--EEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcc
Confidence            9999999987 5444899999 888774300       0111  1123588877766  7899999999998876543

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.61  E-value=1.4e-14  Score=120.14  Aligned_cols=169  Identities=15%  Similarity=0.188  Sum_probs=103.0

Q ss_pred             cceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC--------------ccccccEEEeec-----CeEEEeec
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE--------------PYQTKDIVVMQN-----GSLLFTRV  119 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~--------------~~~~~~~~~~~~-----~~l~i~~~  119 (460)
                      .|....+.+|++++|.|.+.+.+ ....+.|+|+.  ....              .....++....+     .+|.|.++
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (215)
T 1c5d_H            6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (215)
T ss_dssp             EECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred             cCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence            35556788999999999998764 23479999852  2110              011245554431     27999999


Q ss_pred             CCCCCeEEEEEEEcCCCCc-ceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCC-eeEEEcC
Q psy535          120 NQNHQGRYTCTPYNAHGTQ-GSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKP-TITWQRR  192 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~~g~~-~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~-~~~W~~~  192 (460)
                      +.+|+|.|+|.+.+..+.. .......|.|.    .+|.+...+... .+..|+.++|.|.+   .+. |.+ .+.|+++
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~---~g~~P~p~~v~W~~~  161 (215)
T 1c5d_H           86 QTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGC-GDTTSSTVTLGCLV---KGYFPEPVTVTWNSG  161 (215)
T ss_dssp             CGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCS-SCCCCSSEEEEEEE---EEEBSSCCEEEEGGG
T ss_pred             CcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCCh-hhccCCcEEEEEEE---eeeEcCCcEEEEccC
Confidence            9999999999998864221 11112344444    245554433222 35689999999999   454 777 9999985


Q ss_pred             CCccCC-cccEEEecceEE----EccccceeceEEEEEEecccceeee
Q psy535          193 DGVALP-KNRVKIVGGNIT----IEGLRRVDFGYYECVVSNEVATIVQ  235 (460)
Q Consensus       193 ~~~~~~-~~~~~~~~~~l~----i~~~~~~~~g~y~C~a~n~~g~~~~  235 (460)
                      +..... .......++.+.    +......+ |.|+|.+.|..+....
T Consensus       162 g~~~~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~  208 (215)
T 1c5d_H          162 ALSSDVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKV  208 (215)
T ss_dssp             TTCCSCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEE
T ss_pred             CccCceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccE
Confidence            432111 111111112221    22233244 9999999998876543

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=6.1e-15  Score=109.36  Aligned_cols=105  Identities=20%  Similarity=0.238  Sum_probs=77.9

Q ss_pred             CCCcEEEEcc-CCCCCCCcceEEEeec-ceEEEEecCCCCCCccc----eEEEEEEEEcCCeeeeccccCCCCccccccc
Q psy535          330 LSNIVVVKTK-GPKPGPPRNVSVTEVN-NGFVISWQPPLERASLI----QYYLIKYRTDGSWKTLNKGQIRPEENSYLGE  403 (460)
Q Consensus       330 ~s~~~~~~~~-~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i----~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (460)
                      .|..+.+... ..+|.+|.++++...+ ++|.|+|+++...++.+    .+|+|+|+..+.                   
T Consensus         5 ~s~~~~~~~~~~~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~~~i~~~~~~Y~v~y~~~~~-------------------   65 (123)
T 2edd_A            5 SSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFS-------------------   65 (123)
T ss_dssp             CSCCCCSCSSCCCSSCCCEEEEEEEEETTEEEEEEECSSSCSSCCCSCCCCEEEEEEETTC-------------------
T ss_pred             cCCCCcCCCccCCCCCCCcceEEEEcCCCeEEEEecCCCCCcccccCcCceEEEEEEECCC-------------------
Confidence            3444444433 3457899999998877 69999999886555444    499999997532                   


Q ss_pred             ceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                          +...|..+.   ...+.++|.+|+|++.|.|+|+|+|..|.|++|..+.++|.
T Consensus        66 ----~~~~~~~~~---~~~~~~~v~gL~P~T~Y~f~V~A~n~~g~g~~S~~v~~~T~  115 (123)
T 2edd_A           66 ----ASAKYKSED---TTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTY  115 (123)
T ss_dssp             ----TTCCCCCEE---ESSSEEEEESCCTTCEEEEEEEECCSSSCCCCCCCEEEECC
T ss_pred             ----CCccEEEEe---CCceEEEecCCCCCCEEEEEEEEeCCCcccCCCCCEEEEcc
Confidence                000111111   24678999999999999999999999999999999999984

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.61  E-value=6.4e-15  Score=127.49  Aligned_cols=172  Identities=13%  Similarity=0.182  Sum_probs=106.8

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eecC---------------ccccccEEEeec----CeEE
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLLE---------------PYQTKDIVVMQN----GSLL  115 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~---------------~~~~~~~~~~~~----~~l~  115 (460)
                      +.+...|....+.+|++++|.|.+.+.+.+ .+.|+|++  ....               .....++....+    .+|.
T Consensus        25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           25 AVVSQHPSWVISKSGTSVKIECRSLDFQAT-TMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCEE-EEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             ceEEeCCCeEEecCCCeEEEEEEeCCCCCC-eEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            345566777889999999999999776544 79999853  1110               001245554432    3799


Q ss_pred             EeecCCCCCeEEEEEEEcCCC----Cc--ceeeEEEEEe----eCCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CC
Q psy535          116 FTRVNQNHQGRYTCTPYNAHG----TQ--GSSGQMEVLV----RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QK  184 (460)
Q Consensus       116 i~~~~~~d~G~y~C~~~~~~g----~~--~~~~~~~v~v----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~  184 (460)
                      |.+++.+|+|.|+|.+.+..+    ..  .....+.|..    ..+|.+.+.+.....+..|+.++|.|.+   .+. |.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~---~g~~P~  180 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA---TGFYPD  180 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEE---EEEBSS
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEE---eeEcCC
Confidence            999999999999999998432    11  1122333332    1356555432222234568999999999   454 53


Q ss_pred             -CeeEEEcCCCccCCcccEEE----------ec------ceEEEcccccee-ceEEEEEEeccccee
Q psy535          185 -PTITWQRRDGVALPKNRVKI----------VG------GNITIEGLRRVD-FGYYECVVSNEVATI  233 (460)
Q Consensus       185 -~~~~W~~~~~~~~~~~~~~~----------~~------~~l~i~~~~~~~-~g~y~C~a~n~~g~~  233 (460)
                       +.+.|+++ +..+.......          .+      ..|.|......| .+.|+|.+.|.....
T Consensus       181 ~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~  246 (279)
T 2wbj_D          181 HVELSWWVN-GKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  246 (279)
T ss_dssp             CEEEEEEET-TEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred             CcEEEEEEC-CEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence             69999994 44443221110          11      236666655544 678999999976543

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.60  E-value=4.5e-15  Score=107.76  Aligned_cols=93  Identities=23%  Similarity=0.340  Sum_probs=72.7

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCCCC-CCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPPLE-RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~-~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      +|.+|..+++...+ +++.|+|.+|.. ++.+|++|.|+|+..+.                         ..|..+....
T Consensus        10 ~p~~P~~P~v~~v~~~sv~L~W~~P~~~gg~~i~~Y~Ve~~~~~~-------------------------~~w~~~~~~~   64 (112)
T 1bpv_A           10 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPN-------------------------GRWLKANFSN   64 (112)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTS-------------------------CCCEECCCSC
T ss_pred             CCCCCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCC-------------------------CceEEeeccc
Confidence            47778888887776 699999997754 45689999999997532                         1244333333


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCC-CCCCceeEeec
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGD-GMLSNIVVVKT  459 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~-s~~s~~~~~~T  459 (460)
                      ...+.+++.+|.|++.|.|||+|+|..|. |++|..+.+.|
T Consensus        65 ~~~~~~~v~~L~p~t~Y~frV~A~N~~G~~s~~S~~~~~~t  105 (112)
T 1bpv_A           65 ILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAIT  105 (112)
T ss_dssp             CCSSEEEECSCCSSCCEEEEEEEECTTSCEEEEEEEEEEEC
T ss_pred             CccCEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEE
Confidence            46788999999999999999999999997 99998876554

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.60  E-value=6.1e-15  Score=125.32  Aligned_cols=126  Identities=15%  Similarity=0.169  Sum_probs=88.4

Q ss_pred             cceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC------------e-eEEcceeeeeccee
Q psy535            9 ETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA------------K-VTFTPTVQYLPFRL   72 (460)
Q Consensus         9 ~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------------~-~~~~~~~~~~~~g~   72 (460)
                      .+|+.+..++   +|.|.+++.+|+|.|+|.+.|..+......+.|.|..++            . ....+....+.+|+
T Consensus        64 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  143 (247)
T 1svz_A           64 PDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGE  143 (247)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTC
T ss_pred             CCcEEeccCCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCC
Confidence            5788886543   899999999999999999998765433345678886542            1 22333445688999


Q ss_pred             eEEEEEEEecCC-CCCeEEEeeCC--eecC---------------ccccccEEEeec-----CeEEEeecCCCCCeEEEE
Q psy535           73 QGVVQCHIKANP-TFQYVTWTKDK--RLLE---------------PYQTKDIVVMQN-----GSLLFTRVNQNHQGRYTC  129 (460)
Q Consensus        73 ~~~l~C~~~~~~-~~~~v~W~~~~--~~~~---------------~~~~~~~~~~~~-----~~l~i~~~~~~d~G~y~C  129 (460)
                      +++|.|.+.+.+ +.+.+.|+|++  ..+.               .....++....+     .+|.|.+++.+|+|.|+|
T Consensus       144 ~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C  223 (247)
T 1svz_A          144 TVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFC  223 (247)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             cEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEE
Confidence            999999998875 23479999953  2110               001234444321     379999999999999999


Q ss_pred             EEEcC
Q psy535          130 TPYNA  134 (460)
Q Consensus       130 ~~~~~  134 (460)
                      .|.|.
T Consensus       224 ~a~n~  228 (247)
T 1svz_A          224 VRDRH  228 (247)
T ss_dssp             EEEEG
T ss_pred             EEecc
Confidence            99884

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.60  E-value=1.7e-14  Score=122.95  Aligned_cols=166  Identities=14%  Similarity=0.198  Sum_probs=105.0

Q ss_pred             cceeeeecceeeEEEEEEEecCCC-CCeEEEeeCC--eecC---------------ccccccEEEee-----cCeEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKDK--RLLE---------------PYQTKDIVVMQ-----NGSLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~~---------------~~~~~~~~~~~-----~~~l~i~~  118 (460)
                      .|....+.+|++++|.|.+.+.+. ...+.|+|+.  ..+.               .....++.+..     +..|.|.+
T Consensus        12 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   91 (261)
T 2xqy_G           12 QPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS   91 (261)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence            355667889999999999987652 3479999853  2211               00124555443     23799999


Q ss_pred             cCCCCCeEEEEEEEcCCCCc-ceeeEEEEEeeC----CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcC
Q psy535          119 VNQNHQGRYTCTPYNAHGTQ-GSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRR  192 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~g~~-~~~~~~~v~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~  192 (460)
                      ++.+|+|.|+|.+.+..+.. .......|.|..    +|.+...+... .+..|+.++|.|.+.  ...|.+ .+.|+++
T Consensus        92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~-~v~~g~~v~L~C~~~--g~~P~~i~v~W~k~  168 (261)
T 2xqy_G           92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVC-GDTTGSSVTLGCLVK--GYFPEPVTLTWNSG  168 (261)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCC-C--CCSEEEEEEEEE--EEBSSCCEEEEGGG
T ss_pred             CCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCc-cccCCCcEEEEEEEE--eEeCCCCEEEEecC
Confidence            99999999999999864311 111223455543    45544332222 356799999999983  224666 9999985


Q ss_pred             CCccCCc---ccE-----EEecceEEEccccceeceEEEEEEecccce
Q psy535          193 DGVALPK---NRV-----KIVGGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       193 ~~~~~~~---~~~-----~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      +. .+..   ...     ......|.|......+ |.|+|.+.|....
T Consensus       169 g~-~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~  214 (261)
T 2xqy_G          169 SL-SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  214 (261)
T ss_dssp             TC-CTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             CC-cCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence            54 2211   111     1123468888887777 9999999986554

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.60  E-value=2.2e-15  Score=125.96  Aligned_cols=128  Identities=12%  Similarity=0.168  Sum_probs=88.9

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCC-----C--cceeeeEEEEec----CCeeEEcceeeeecce
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIG-----E--PQAAQAYLNVEF----PAKVTFTPTVQYLPFR   71 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g   71 (460)
                      ..+|+.+..+     ++|.|.+++.+|+|.|+|.+.+..|     .  .....+.|.|..    +|.+...+....+.+|
T Consensus        64 ~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g  143 (225)
T 1op3_H           64 VKGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSG  143 (225)
T ss_dssp             TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCC
T ss_pred             cCCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCC
Confidence            4579998763     4899999999999999999998764     1  112356788875    3444332222234679


Q ss_pred             eeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEee------cCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           72 LQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQ------NGSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        72 ~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      +.++|.|.+.+. |.+..|.|++++..+......... ..      .+.|.|.++..+| |.|+|.|.|..+.
T Consensus       144 ~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~-~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  214 (225)
T 1op3_H          144 GTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVL-QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  214 (225)
T ss_dssp             CEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCEE-CTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred             CcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCcee-CCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence            999999999987 544489999998764311111111 11      2358899888888 9999999986543

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.60  E-value=3.6e-15  Score=124.91  Aligned_cols=130  Identities=19%  Similarity=0.188  Sum_probs=88.2

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCC------C--cceeeeEEEEec----CCeeEEcceeeeecc
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIG------E--PQAAQAYLNVEF----PAKVTFTPTVQYLPF   70 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~   70 (460)
                      ..+|+.+..+     ++|.|.+++.+|+|.|+|.+.+..|      .  .....+.|.|..    +|.+...+....+.+
T Consensus        65 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~  144 (228)
T 3bae_H           65 LESRLTISKDTSRDMVFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTT  144 (228)
T ss_dssp             TGGGEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----C
T ss_pred             cCCcEEEEEcCCCCeEEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccC
Confidence            4689998753     5899999999999999999998754      1  112346788863    455544332334567


Q ss_pred             eeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEE----EeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIV----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      |+.++|.|.+.+. |.+..|.|++++..+.......+.    ....+.|.|.++..+| |.|+|.|.|..+..
T Consensus       145 g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~  216 (228)
T 3bae_H          145 GSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASST  216 (228)
T ss_dssp             CSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             CCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCC
Confidence            9999999999986 554489999998764311111111    1122358888888766 99999999987764

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=6.1e-15  Score=108.59  Aligned_cols=97  Identities=27%  Similarity=0.475  Sum_probs=76.5

Q ss_pred             CCCCCCcceEEEee--c-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535          341 PKPGPPRNVSVTEV--N-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV  417 (460)
Q Consensus       341 ~~P~~p~~~~~~~~--~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (460)
                      .+|.+|.++++...  + +++.|+|++|...++.|.+|.|+|+..+..                      ....|... .
T Consensus         7 ~P~~~P~~l~~~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~----------------------~~~~~~~~-~   63 (114)
T 2ede_A            7 GPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNI----------------------PIDDWIME-T   63 (114)
T ss_dssp             CCCSCCEEEEEEECSSCSSCEEEEEECCSSCSSCCSEEEEEEESCSSS----------------------CTTTSEEE-E
T ss_pred             CCCCCCcceEEEEccCCCCEEEEEECCCCCCCCceeEEEEEEEeCCCC----------------------CccceEEE-E
Confidence            33589999999876  4 599999999987788999999999964320                      00112211 1


Q ss_pred             CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      .....+.+.|.+|.|++.|.|+|+|.|..|.|++|+.+.++|.
T Consensus        64 ~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  106 (114)
T 2ede_A           64 ISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTL  106 (114)
T ss_dssp             EETTCCEEEECSCCSSCEEEEEEEEECSSCBCCCCCCEEEECC
T ss_pred             ECCCceEEEEcCCCCCCEEEEEEEEEeCCcCcCCcccEEEEec
Confidence            1246788999999999999999999999999999999999884

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.59  E-value=9e-15  Score=106.91  Aligned_cols=91  Identities=25%  Similarity=0.522  Sum_probs=73.3

Q ss_pred             CCCCCCCcceEEEeec-ceEEEEecCCCCCCc-cceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535          340 GPKPGPPRNVSVTEVN-NGFVISWQPPLERAS-LIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV  417 (460)
Q Consensus       340 ~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~-~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (460)
                      ..+|.+|.++++...+ +++.|+|++|...++ ++.+|.|+|+..+.                         ..|..+..
T Consensus         6 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~-------------------------~~w~~~~~   60 (111)
T 1x5y_A            6 SGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGS-------------------------EEWVPANK   60 (111)
T ss_dssp             CSCCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTC-------------------------CCCEESSS
T ss_pred             CCCCcCCCCCEEEeccCCEEEEEECCCCcCCCCcccEEEEEEEECCC-------------------------CceEEccc
Confidence            4568999999998876 699999999876544 69999999997542                         13444333


Q ss_pred             CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535          418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV  455 (460)
Q Consensus       418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~  455 (460)
                      .....+.+++.+|.+++.|.|||+|+|..|.|++|...
T Consensus        61 ~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~   98 (111)
T 1x5y_A           61 EPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLL   98 (111)
T ss_dssp             SCBSSSEEEEECCCTTCCEEEEEEEEETTEECCCCCCS
T ss_pred             cCCcccEEEECCCCCCCEEEEEEEEEcCCcCCCCccCC
Confidence            33457889999999999999999999999999998865

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=6.2e-15  Score=109.29  Aligned_cols=91  Identities=26%  Similarity=0.382  Sum_probs=75.8

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      .+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|+|++..+.. ...++....+++|.|.++..+|+|.|+|.|.|.
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~g~~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   84 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVP-TILWRKDGVLVST-QDSRIKQLENGVLQIRYAKLGDTGRYTCIASTP   84 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCC-EEEEEESSSBCCT-TSTTEEEEETTEEEEESCCGGGCCCEEEEEECS
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCC-EEEEEECCEECcC-CCCeEEEccCCEEEEccCCcCCCEEEEEEEEcC
Confidence            46777778888889999999999999998776 7999999988864 345666777889999999999999999999999


Q ss_pred             CCCcceeeEEEEE
Q psy535          135 HGTQGSSGQMEVL  147 (460)
Q Consensus       135 ~g~~~~~~~~~v~  147 (460)
                      .|.......+.|.
T Consensus        85 ~g~~~~~~~l~V~   97 (118)
T 2eo9_A           85 SGEATWSAYIEVQ   97 (118)
T ss_dssp             SCEEEEECCEEEE
T ss_pred             CCcEEEEEEEEEE
Confidence            9886555554444

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.59  E-value=5e-15  Score=126.13  Aligned_cols=175  Identities=13%  Similarity=0.167  Sum_probs=106.8

Q ss_pred             cceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--ee---c------------CccccccEEEeecC-----eEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RL---L------------EPYQTKDIVVMQNG-----SLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~---~------------~~~~~~~~~~~~~~-----~l~i~~  118 (460)
                      .|....+.+|++++|.|.+.+.. ....+.|+|..  ..   +            ......|+....+.     +|.|.+
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (253)
T 3liz_H            6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS   85 (253)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred             cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            34556788999999999997632 23469999832  11   1            00112344444322     399999


Q ss_pred             cCCCCCeEEEEEEEcCCC--CcceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEc
Q psy535          119 VNQNHQGRYTCTPYNAHG--TQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQR  191 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~g--~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~  191 (460)
                      ++.+|+|.|.|.+.+...  .........|.|.    .+|.+...+... .+..|+.++|.|.+.  ...|.+ .+.|++
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~--g~~P~~~~v~W~~  162 (253)
T 3liz_H           86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGS-AAQTNSMVTLGCLVK--GYFPEPVTVTWNS  162 (253)
T ss_dssp             CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC-------CCEEEEEEEEE--EEBSSCCEEEEGG
T ss_pred             CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCc-ccCCCCcEEEEEEEe--eEeCCCeEEEEEe
Confidence            999999999999987521  1111222334443    455554333322 356799999999994  226666 899998


Q ss_pred             CCCcc--------CCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          192 RDGVA--------LPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       192 ~~~~~--------~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      ++...        .....+ ...+.|.|......| |.|+|.+.|..+.......+.+
T Consensus       163 ~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~  218 (253)
T 3liz_H          163 GSLSSGVHTFPAVLQSDLY-TLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVP  218 (253)
T ss_dssp             GTBCTTEEECCCEEETTEE-EEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred             CCeecceEeCCccccCCeE-EEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecC
Confidence            54311        011111 123568888888888 9999999998887655555443

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.59  E-value=2.8e-15  Score=127.68  Aligned_cols=132  Identities=15%  Similarity=0.180  Sum_probs=88.2

Q ss_pred             cccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCC---CcceeeeEEEEe----cCCeeEEcceeeeecceeeE
Q psy535            7 SLETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIG---EPQAAQAYLNVE----FPAKVTFTPTVQYLPFRLQG   74 (460)
Q Consensus         7 ~~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~   74 (460)
                      ...+|+++..++     +|.|.+++.+|+|.|.|.+.+...   ........|.|.    .+|.+...+....+..|+.+
T Consensus        63 ~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v  142 (253)
T 3liz_H           63 TVKGRFTISRDNAKNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMV  142 (253)
T ss_dssp             TTTTTCEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEE
T ss_pred             ccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcE
Confidence            345899987653     599999999999999999988621   111344577775    35555544444455679999


Q ss_pred             EEEEEEec-CCCCCeEEEeeCCeecCccccccE----EEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535           75 VVQCHIKA-NPTFQYVTWTKDKRLLEPYQTKDI----VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        75 ~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                      +|.|.+.+ .|.+..+.|++++..+........    .....+.|.|.....+| |.|+|.|.|..+...
T Consensus       143 ~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~  211 (253)
T 3liz_H          143 TLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK  211 (253)
T ss_dssp             EEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEE
T ss_pred             EEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcc
Confidence            99999998 554447999999874321111111    11122469999999999 999999999876543

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}

Probab=99.59  E-value=6.7e-15  Score=109.37  Aligned_cols=96  Identities=24%  Similarity=0.387  Sum_probs=73.2

Q ss_pred             CCCCCCCcceEEEeecceEEEEecCCCCCCcc-ceEEEEEEEEcCC--eeeeccccCCCCcccccccceecCceeeeeec
Q psy535          340 GPKPGPPRNVSVTEVNNGFVISWQPPLERASL-IQYYLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIP  416 (460)
Q Consensus       340 ~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~-i~~y~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (460)
                      ..+|.+|.++.+...+.++.|+|++|...++. |.+|.|+|+..+.  |...                       +..+.
T Consensus         5 ~~~P~~P~~~~~~~~~~tv~l~W~~P~~~~G~pI~~Y~v~~~~~~~~~~~~~-----------------------~~~~~   61 (122)
T 2e3v_A            5 SSGPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSK-----------------------WYDAK   61 (122)
T ss_dssp             -CCCCCCEEEEEEECSSCEEEEEECCCCC--CCEEEEEEEEEETTCCSCEEE-----------------------EEEHH
T ss_pred             CcCCcCCCccEEEecCCcEEEEECCCCcCCCCcceEEEEEEEECCCCCcccc-----------------------eeeee
Confidence            34688899999988775699999999766664 9999999997653  3110                       01011


Q ss_pred             cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                       .....+.++|.+|.|++.|.|+|+|+|..|.|++|..+.++|
T Consensus        62 -~~~~~~~~~i~~L~p~t~Y~~rV~A~n~~G~g~~S~~~~~~t  103 (122)
T 2e3v_A           62 -EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT  103 (122)
T ss_dssp             -HHHTTTEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEEC
T ss_pred             -ecCccceEEeCCCCCCCEEEEEEEEEeCCccCCCcccccccc
Confidence             113567899999999999999999999999999999988865

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.59  E-value=1.3e-14  Score=121.03  Aligned_cols=127  Identities=17%  Similarity=0.257  Sum_probs=90.6

Q ss_pred             ccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCC-CcceeeeEEEEe----cCCeeE-EcceeeeecceeeEEE
Q psy535            8 LETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIG-EPQAAQAYLNVE----FPAKVT-FTPTVQYLPFRLQGVV   76 (460)
Q Consensus         8 ~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~----~~p~~~-~~~~~~~~~~g~~~~l   76 (460)
                      ..+|+.+..++     +|.|.+++.+|+|.|.|.+.+... ........|.|.    .+|.+. ..+...  .+|+.++|
T Consensus        66 ~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L  143 (221)
T 3m8o_H           66 MRGRLTISRDDSKNTAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVI  143 (221)
T ss_dssp             GTTSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEE
T ss_pred             ccccEEEEecCCCCEEEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEE
Confidence            46899998664     699999999999999999998642 222445677775    234443 233323  67899999


Q ss_pred             EEEEec-CCC-CCeEEEeeCCeecCcc--------ccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           77 QCHIKA-NPT-FQYVTWTKDKRLLEPY--------QTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        77 ~C~~~~-~~~-~~~v~W~~~~~~~~~~--------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      .|.+.+ .|. +..+.|+++|..+...        ....+..  .+.|.|..+...|+|.|+|.|.+..+..
T Consensus       144 ~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          144 ACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTT--SSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             EEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEE--EEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             EEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEE--EEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            999998 555 4589999998776321        1112211  2358899999999999999999976543

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.58  E-value=1.1e-14  Score=122.19  Aligned_cols=135  Identities=15%  Similarity=0.244  Sum_probs=87.0

Q ss_pred             ccceEEEeeC---C--eEEEeecCCCCCeeEEEEEEeCC--CC---cceeeeEEEEec----CCeeEE-cceeeeecce-
Q psy535            8 LETRVVIKKD---G--TLVINPVGSDDSGLYMCEVSNGI--GE---PQAAQAYLNVEF----PAKVTF-TPTVQYLPFR-   71 (460)
Q Consensus         8 ~~~r~~~~~~---~--~L~i~~~~~~d~G~Y~C~~~~~~--~~---~~~~~~~l~v~~----~p~~~~-~~~~~~~~~g-   71 (460)
                      ..+|+.+..+   +  +|.|.+++.+|+|.|.|.+.+..  +.   .....+.|.|..    +|.+.. .|. ..+..| 
T Consensus        63 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~~~~g~  141 (232)
T 1dn0_B           63 LKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSC-ENSPSDT  141 (232)
T ss_dssp             TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------C
T ss_pred             cCCeEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccc-cccCCCC
Confidence            4689998753   2  89999999999999999998421  11   112346788865    244432 233 234467 


Q ss_pred             eeEEEEEEEecC-CCCCeEEEee-CCeecCccc-cccE----EEeecCeEEEeecCC--CCCeEEEEEEEcCCCCcceee
Q psy535           72 LQGVVQCHIKAN-PTFQYVTWTK-DKRLLEPYQ-TKDI----VVMQNGSLLFTRVNQ--NHQGRYTCTPYNAHGTQGSSG  142 (460)
Q Consensus        72 ~~~~l~C~~~~~-~~~~~v~W~~-~~~~~~~~~-~~~~----~~~~~~~l~i~~~~~--~d~G~y~C~~~~~~g~~~~~~  142 (460)
                      +.++|.|.+.+. |.+..++|++ +|..+.... ....    .....+.|.|.....  +|.|.|+|.|.|..+......
T Consensus       142 ~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~  221 (232)
T 1dn0_B          142 SSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNV  221 (232)
T ss_dssp             CSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEE
T ss_pred             CcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeE
Confidence            899999999986 5544899999 888764310 0000    111123588888776  789999999999887654443


Q ss_pred             E
Q psy535          143 Q  143 (460)
Q Consensus       143 ~  143 (460)
                      .
T Consensus       222 ~  222 (232)
T 1dn0_B          222 P  222 (232)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.58  E-value=1.3e-14  Score=123.59  Aligned_cols=167  Identities=14%  Similarity=0.193  Sum_probs=101.0

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Cee---cCcc----------ccc-cEEEeecCe--EEEeecCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRL---LEPY----------QTK-DIVVMQNGS--LLFTRVNQ  121 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~~~~----------~~~-~~~~~~~~~--l~i~~~~~  121 (460)
                      ...|....+.+|++++|.|.+.+.+.+ .+.|+|.  +..   +...          ... ++....++.  |.|.+++.
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~   83 (253)
T 3to4_D            5 EQNPRWRLVPRGQAVNLRCILKNSQYP-WMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANM   83 (253)
T ss_dssp             EEECSEEEEESSCCEEEEEECSCTTCC-CEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESC
T ss_pred             EeCCCeEEEeCCCcEEEEEEeCCCCcc-eEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCCh
Confidence            345667788899999999998776654 7999982  111   0000          011 444433333  99999999


Q ss_pred             CCCeEEEEEEEcCCCC----cce--eeEEEEEe----eCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEE
Q psy535          122 NHQGRYTCTPYNAHGT----QGS--SGQMEVLV----RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQ  190 (460)
Q Consensus       122 ~d~G~y~C~~~~~~g~----~~~--~~~~~v~v----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~  190 (460)
                      +|+|.|+|.+.+..+.    ...  ...+.|..    ..+|.+.+.+.....+..|+.++|.|.+.  ...|.+ .+.|+
T Consensus        84 ~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~--g~~P~~i~v~W~  161 (253)
T 3to4_D           84 SQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLAT--GFYPDHVELSWW  161 (253)
T ss_dssp             SSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEE--EEBSSCEEEEEE
T ss_pred             hhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEc--eEECCcEEEEEE
Confidence            9999999999865431    111  12333331    14555544332222334578999999993  336666 89999


Q ss_pred             cCCCccCCcccEE----------------EecceEEEcccccee-ceEEEEEEeccc
Q psy535          191 RRDGVALPKNRVK----------------IVGGNITIEGLRRVD-FGYYECVVSNEV  230 (460)
Q Consensus       191 ~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~~-~g~y~C~a~n~~  230 (460)
                      ++ +..+......                .....|.|......| .|.|+|.+.+..
T Consensus       162 k~-g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          162 VN-GKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             ET-TEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             EC-CEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            94 4443221111                011245566555555 679999999864

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.58  E-value=7e-15  Score=127.17  Aligned_cols=127  Identities=18%  Similarity=0.319  Sum_probs=90.5

Q ss_pred             ccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeC--------CCCcceeeeEEEEec---------------CCee
Q psy535            8 LETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNG--------IGEPQAAQAYLNVEF---------------PAKV   59 (460)
Q Consensus         8 ~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~--------~~~~~~~~~~l~v~~---------------~p~~   59 (460)
                      ..+|+.+..++     +|.|.+++.+|+|.|.|.+.+.        ..........|.|..               ++.+
T Consensus        64 ~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v  143 (280)
T 3fku_X           64 FQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGL  143 (280)
T ss_dssp             GTTTCEEEEETTTTEEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSB
T ss_pred             cCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEE
Confidence            34789988553     8999999999999999999986        111123456777766               4556


Q ss_pred             EEcceeeeecceeeEEEEEEEec-CCCCCeEEEeeC--CeecCc----------cccccEEEeecC---eEEEeecCCCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKA-NPTFQYVTWTKD--KRLLEP----------YQTKDIVVMQNG---SLLFTRVNQNH  123 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~v~W~~~--~~~~~~----------~~~~~~~~~~~~---~l~i~~~~~~d  123 (460)
                      ...|. ..+.+|++++|.|.+.+ .+..+.+.|+|.  +..+..          ....++....++   .|.|.+++.+|
T Consensus       144 ~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  222 (280)
T 3fku_X          144 TQPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPED  222 (280)
T ss_dssp             BCCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             EeCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHH
Confidence            66666 88899999999999988 433357999983  222110          012333333332   49999999999


Q ss_pred             CeEEEEEEEcCC
Q psy535          124 QGRYTCTPYNAH  135 (460)
Q Consensus       124 ~G~y~C~~~~~~  135 (460)
                      +|.|+|.+.+..
T Consensus       223 sG~Y~C~~~~~~  234 (280)
T 3fku_X          223 EADYYCSTWDSS  234 (280)
T ss_dssp             CSEEEEEEEETT
T ss_pred             CEEEEEEEecCC
Confidence            999999998865

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=3.8e-15  Score=111.81  Aligned_cols=112  Identities=26%  Similarity=0.210  Sum_probs=82.2

Q ss_pred             CCcEEEEccCCCC-CCCcceEEEeec-ceEEEEecCCCC--CCccceEEEEEEEEcCCeeeeccccCCCCccccccccee
Q psy535          331 SNIVVVKTKGPKP-GPPRNVSVTEVN-NGFVISWQPPLE--RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYRE  406 (460)
Q Consensus       331 s~~~~~~~~~~~P-~~p~~~~~~~~~-~~v~l~W~~~~~--~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (460)
                      |..+.+.+.+..| .+|.++++...+ +++.|+|++|..  .++.|.+|.|+|+..+.-...          .+    ..
T Consensus         2 S~~v~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~gY~v~~~~~~~~~~~----------~~----~~   67 (125)
T 1uen_A            2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKR----------NR----RH   67 (125)
T ss_dssp             CCCCCCCSCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCS----------TT----CC
T ss_pred             CccEEEECCCCCCCCCCceeEEEecCCcEEEEEEcCCCchhcCceEeEEEEEEEECCCCccc----------cc----cc
Confidence            3455667777777 799999998876 599999999853  477899999999975430000          00    00


Q ss_pred             cCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          407 QGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                       ......   ......+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|+
T Consensus        68 -~~~~~~---~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  117 (125)
T 1uen_A           68 -IEKKIL---TFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTP  117 (125)
T ss_dssp             -CCEEEE---EEESSCSEEEEESCCSSCEEEEEEEEEESSCEEEECCCEEEECC
T ss_pred             -ccceEE---EecCCccEEEeCCCCCCCEEEEEEEEecCCCCCCCCCCEEEECC
Confidence             000001   11245689999999999999999999999999999999999884

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.58  E-value=6e-15  Score=128.36  Aligned_cols=127  Identities=14%  Similarity=0.206  Sum_probs=90.2

Q ss_pred             cceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCC-CC---cceeeeEEEEec----------------CCeeEEcc
Q psy535            9 ETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGI-GE---PQAAQAYLNVEF----------------PAKVTFTP   63 (460)
Q Consensus         9 ~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~-~~---~~~~~~~l~v~~----------------~p~~~~~~   63 (460)
                      .+|+++..+     ++|.|.+++.+|+|.|+|.+.+.. |.   .....+.|.|..                ++.+...|
T Consensus        87 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p  166 (291)
T 2gki_A           87 KGKATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSP  166 (291)
T ss_dssp             BTTBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSC
T ss_pred             CCCEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCC
Confidence            578888652     489999999999999999999874 21   112345777766                23345556


Q ss_pred             eeeeecceeeEEEEEEEecCCCC-----CeEEEeeCC--eecC---c-------cccccEEEeec---CeEEEeecCCCC
Q psy535           64 TVQYLPFRLQGVVQCHIKANPTF-----QYVTWTKDK--RLLE---P-------YQTKDIVVMQN---GSLLFTRVNQNH  123 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~~-----~~v~W~~~~--~~~~---~-------~~~~~~~~~~~---~~l~i~~~~~~d  123 (460)
                      ....+.+|++++|.|.+.+.+.+     +.+.|+|+.  ..+.   .       ....++....+   .+|.|.+++.+|
T Consensus       167 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  246 (291)
T 2gki_A          167 SSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAED  246 (291)
T ss_dssp             SEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHH
Confidence            67788999999999999887654     279999952  2111   0       01234433222   369999999999


Q ss_pred             CeEEEEEEEcCC
Q psy535          124 QGRYTCTPYNAH  135 (460)
Q Consensus       124 ~G~y~C~~~~~~  135 (460)
                      +|.|+|.+.|..
T Consensus       247 sG~Y~C~a~~~~  258 (291)
T 2gki_A          247 LAVYYCKQSYYH  258 (291)
T ss_dssp             CEEEEEEEEETT
T ss_pred             CEEEEEEEccCC
Confidence            999999998853

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.7e-14  Score=105.26  Aligned_cols=90  Identities=22%  Similarity=0.386  Sum_probs=73.1

Q ss_pred             CCCCCCcceEEEeec-ceEEEEecCCCCC-CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccC
Q psy535          341 PKPGPPRNVSVTEVN-NGFVISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT  418 (460)
Q Consensus       341 ~~P~~p~~~~~~~~~-~~v~l~W~~~~~~-~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (460)
                      .+|.+|.++++.... +++.|+|++|... +.++.+|.|+|+..+.                         ..|..+...
T Consensus         6 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~-------------------------~~w~~~~~~   60 (110)
T 2yuw_A            6 SGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGT-------------------------EDWIVANKD   60 (110)
T ss_dssp             CCSCCCEEEEEEEECSSCEEEEEECCSSCCSSCEEEEEEEEEETTC-------------------------SSEEECCSS
T ss_pred             CCCCCCCccEEEeccCCeEEEEECCCCCCCCCCccEEEEEEEECCC-------------------------ccceEeccc
Confidence            458999999998776 6999999998754 4589999999997542                         134444333


Q ss_pred             CCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535          419 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV  455 (460)
Q Consensus       419 ~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~  455 (460)
                      ....+.+++.+|.+++.|.|||+|+|..|.|++|...
T Consensus        61 ~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~   97 (110)
T 2yuw_A           61 LIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYS   97 (110)
T ss_dssp             CCCSSEEEECSCCTTCEEEEEEEEEETTEECCCEECS
T ss_pred             cCccCEEEECCCCCCCEEEEEEEEEcCCcCCCCcCCC
Confidence            3567899999999999999999999999999998765

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.58  E-value=2.7e-14  Score=103.07  Aligned_cols=92  Identities=16%  Similarity=0.277  Sum_probs=73.9

Q ss_pred             ccCCCCCCCcceEEEeec-ceEEEEe--cCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeee
Q psy535          338 TKGPKPGPPRNVSVTEVN-NGFVISW--QPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP  414 (460)
Q Consensus       338 ~~~~~P~~p~~~~~~~~~-~~v~l~W--~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (460)
                      +...+|.+|.++++...+ ++|.|+|  ++|...++. .+|.|+|+....                        ...|..
T Consensus         5 T~~~~P~~p~~l~~~~~~~~sv~l~W~~~~P~~~ng~-~~Y~v~y~~~~~------------------------~~~~~~   59 (107)
T 1x5a_A            5 SSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGN-LSYELHVLNQDE------------------------EWHQMV   59 (107)
T ss_dssp             TTTCCCCCSCCCCEEEEETTEEEEECCCCCSSCCSSC-CEEEEEEECSSC------------------------EEEEEE
T ss_pred             CCCCCCCCCCceEEEecCCCEEEEEECCCCCCCCCCc-eEEEEEEEeCCC------------------------CceEEE
Confidence            445679999999998877 6999999  888777788 999999986411                        111221


Q ss_pred             eccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          415 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       415 ~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      +      ...+.|.+|.|++.|.|+|+|.|..|.|++|..+.++|.
T Consensus        60 ~------~~~~~i~~L~p~t~Y~f~V~A~~~~G~g~~S~~~~~~T~   99 (107)
T 1x5a_A           60 L------EPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTS   99 (107)
T ss_dssp             S------SSEEEEESCCSSCEEEEEEEEECSSSCCCCCCCEEEECC
T ss_pred             e------cceEEECCCCCCCEEEEEEEEECCCccCCCCCCEEEEEC
Confidence            1      122899999999999999999999999999999999884

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=1.2e-14  Score=105.95  Aligned_cols=95  Identities=21%  Similarity=0.318  Sum_probs=74.3

Q ss_pred             CCCCCCCcceEEEeec-ceEEEEecCCCCCCc-cceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535          340 GPKPGPPRNVSVTEVN-NGFVISWQPPLERAS-LIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV  417 (460)
Q Consensus       340 ~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~-~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (460)
                      ..+|.+|..+++...+ +++.|+|++|.+.++ +|.+|.|+|+..+.                        ...|..+. 
T Consensus         5 ~~~P~~P~~p~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~------------------------~~~~~~~~-   59 (109)
T 1x5x_A            5 SSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETS------------------------GYGFKPKY-   59 (109)
T ss_dssp             CCCCCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSS------------------------SCCCEEEE-
T ss_pred             CCCCcCCCCCEEEEccCCEEEEEEcCCCCCCCCcccEEEEEEecCCC------------------------CcceEEeE-
Confidence            3457788888877776 599999999987666 89999999986542                        01122111 


Q ss_pred             CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                       ....+.++|.+|.|++.|.|||+|+|..|.|++|..+.++|.
T Consensus        60 -~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~  101 (109)
T 1x5x_A           60 -DGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTC  101 (109)
T ss_dssp             -EESCSEEEEESCCSSCEEEEEEEEECSSCEEEECCCEEEECC
T ss_pred             -eCCccEEEECCCCCCCEEEEEEEEEeCCCCcCCccCEEeEeC
Confidence             123678999999999999999999999999999999988874

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.57  E-value=1.6e-14  Score=122.59  Aligned_cols=165  Identities=12%  Similarity=0.144  Sum_probs=90.7

Q ss_pred             ceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--eecC---------------ccccccEEEeec-----CeEEEeec
Q psy535           63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RLLE---------------PYQTKDIVVMQN-----GSLLFTRV  119 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~~~---------------~~~~~~~~~~~~-----~~l~i~~~  119 (460)
                      |....+.+|++++|.|.+.+.+ ....+.|+|..  ..+.               +....++....+     .+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (257)
T 3bn9_D            7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL   86 (257)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred             cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence            4456788999999999998764 13479999843  1110               111245554432     37999999


Q ss_pred             CCCCCeEEEEEEEcCCCC---------c--ceeeEEEEEeeC----CCceeeCCCcccccCCCCeEEEEeeeeccCCCCC
Q psy535          120 NQNHQGRYTCTPYNAHGT---------Q--GSSGQMEVLVRK----PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK  184 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~~g~---------~--~~~~~~~v~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~  184 (460)
                      +.+|+|.|.|.+.+..|.         .  .......|.|..    +|.+.+.+... .+..|+.++|.|.+.  ...|.
T Consensus        87 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~-~~~~g~~v~L~C~~~--g~~P~  163 (257)
T 3bn9_D           87 RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLVK--DYFPE  163 (257)
T ss_dssp             CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC------------CCCEEE--EEBSS
T ss_pred             ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcc-cccCCCcEEEEEEEe--eEECC
Confidence            999999999999987641         1  111223455543    45544332222 356789999999993  23476


Q ss_pred             C-eeEEEcCCCccCCc---ccEEE------ecceEEEccccceeceEEEEEEecccce
Q psy535          185 P-TITWQRRDGVALPK---NRVKI------VGGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       185 ~-~~~W~~~~~~~~~~---~~~~~------~~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      + .+.|++++.. +..   .....      ....|.|......+ |.|+|.+.|....
T Consensus       164 pi~v~W~k~g~~-~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~  219 (257)
T 3bn9_D          164 PVTVSWNSGALT-SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  219 (257)
T ss_dssp             CCEEEETTTTCC-SSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGT
T ss_pred             CcEEEEeeCCCc-CCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCC
Confidence            6 9999985543 211   01111      12245666666667 9999999996544

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.57  E-value=1.5e-14  Score=123.86  Aligned_cols=126  Identities=13%  Similarity=0.190  Sum_probs=89.0

Q ss_pred             cceEEEeeC---CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCC------------------eeE-Ecceee
Q psy535            9 ETRVVIKKD---GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPA------------------KVT-FTPTVQ   66 (460)
Q Consensus         9 ~~r~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------------------~~~-~~~~~~   66 (460)
                      ++|+.+..+   ++|.|.+++.+|+|.|+|.+.+..+......+.|.|..++                  .+. ..+...
T Consensus        69 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (264)
T 2gjj_A           69 PDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPE  148 (264)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCE
T ss_pred             CccEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCE
Confidence            578888654   3899999999999999999998754322345678887653                  222 223334


Q ss_pred             eecceeeEEEEEEEecCCC-CCeEEEeeCC--eecC------c---------cccccEEEee-----cCeEEEeecCCCC
Q psy535           67 YLPFRLQGVVQCHIKANPT-FQYVTWTKDK--RLLE------P---------YQTKDIVVMQ-----NGSLLFTRVNQNH  123 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~~------~---------~~~~~~~~~~-----~~~l~i~~~~~~d  123 (460)
                      .+.+|++++|.|.+.+.+. .+.+.|+|+.  ..+.      .         ....++.+..     ..+|.|.+++.+|
T Consensus       149 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D  228 (264)
T 2gjj_A          149 VVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSED  228 (264)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCccc
Confidence            6889999999999988764 2479999963  2111      0         0023333321     2379999999999


Q ss_pred             CeEEEEEEEcC
Q psy535          124 QGRYTCTPYNA  134 (460)
Q Consensus       124 ~G~y~C~~~~~  134 (460)
                      +|.|+|.+.|.
T Consensus       229 sG~Y~C~a~n~  239 (264)
T 2gjj_A          229 SADYYCVRSGN  239 (264)
T ss_dssp             CEEEEEEEECS
T ss_pred             CEEEEEEEecC
Confidence            99999999985

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.57  E-value=1.3e-14  Score=105.93  Aligned_cols=95  Identities=22%  Similarity=0.384  Sum_probs=74.6

Q ss_pred             cCCCCCCCcceEEE-eec-ceEEEEecCCC-CCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeee
Q psy535          339 KGPKPGPPRNVSVT-EVN-NGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI  415 (460)
Q Consensus       339 ~~~~P~~p~~~~~~-~~~-~~v~l~W~~~~-~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (460)
                      ...+|.+|.++.+. ... +++.|+|++|. +++++|.+|.|+|+..+.                         ..|..+
T Consensus         5 ~~~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~~~~i~~Y~v~~~~~~~-------------------------~~~~~~   59 (110)
T 2crz_A            5 SSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEK-------------------------DEPREV   59 (110)
T ss_dssp             CCCCCCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTS-------------------------CCCEEE
T ss_pred             cCCCCCCCCCceeccccCCCEEEEEeCCCCCCCCceeEEEEEEEEeCCC-------------------------CceEEE
Confidence            34568999999984 444 69999998875 456789999999996432                         122222


Q ss_pred             ccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          416 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       416 ~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      .  ....+.++|.+|.|++.|.|||+|+|..|.|++|+.+.+.|.
T Consensus        60 ~--~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~g~~S~~~~~~T~  102 (110)
T 2crz_A           60 Y--QGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA  102 (110)
T ss_dssp             E--EESCSEEEEESCCTTCEEEECCEEECSSCBCCCCCCEEEECC
T ss_pred             E--eCCcEEEEECCcCCCCEEEEEEEEEcCCccCCCCCccccccC
Confidence            1  135678999999999999999999999999999999988874

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=99.57  E-value=2.1e-14  Score=129.16  Aligned_cols=215  Identities=16%  Similarity=0.110  Sum_probs=111.1

Q ss_pred             cccceeceEEEEEEec------ccceeeeeeEEEE----ecCCCCCCCceeee-eecceEEEEeecCCCCCCCceeeEEE
Q psy535          213 GLRRVDFGYYECVVSN------EVATIVQAAQLVV----EGTQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVI  281 (460)
Q Consensus       213 ~~~~~~~g~y~C~a~n------~~g~~~~~~~l~v----~~~~p~~p~~~~~~-~~~~~~~l~w~~~~~~~~~~~~~~~~  281 (460)
                      .+.....+.|+..|.|      ..|..+.......    .+.|+.+|.++.+. .....+.++|.++...+.  ...|.+
T Consensus        94 ~~~l~~~y~~rV~a~~~~~~~~g~g~~S~~s~~~~~~~~eg~P~~~P~nl~C~~~~~~~l~csW~p~~~~~~--~~~Y~l  171 (380)
T 3lb6_C           94 GFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLL--DTNYNL  171 (380)
T ss_dssp             ECCTTSCEEEEEEEECCHHHHSSSCCBCCCEEEEECCCCCSCTTSSCEEEEEEEETTTEEEEEEECC--------CCEEE
T ss_pred             eecCCCceEEEEEeecCCcccCCccCccccchhhcccCCCCCCCCCCcEeEEEECCCcEEEEEEcCCCCCCC--CccEEE
Confidence            3344556788888874      3344332222222    13466778888764 455689999998654422  257888


Q ss_pred             EEEecCCCCeeee---eccCCCCceEEEc--cCccCccEEEEEEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEeec
Q psy535          282 WYREQGNKDWLPI---PVTPPGSTQITIN--RLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEVN  355 (460)
Q Consensus       282 ~~~~~~~~~~~~~---~~~~~~~~~~~i~--~l~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~~  355 (460)
                      .|+..+...+...   .........+.+.  ++.....|.+++.|.|..|... +..+.+.... ..|.||.++.+....
T Consensus       172 ~y~~~~~~~~~~C~~~~~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~~~-s~~~~~~~~~~v~p~pP~~l~v~~~~  250 (380)
T 3lb6_C          172 FYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIR-SSYFTFQLQNIVKPLPPVYLTFTRES  250 (380)
T ss_dssp             EEECTTCSSCEECSEEEEC--CEEEEECCCCTTCSSSCEEEEEEEC-----CC-CEEEEECGGGSCCCCCCEEEEEC---
T ss_pred             EEEECCCCccccCCCccccCCceEEEEeCCCcccceeEEEEEEEEEcCCeeec-cccEEEcHHHcccCCCCceEEEEEcC
Confidence            8886554333222   1111122245555  4567889999999999988764 3445666555 358999999998754


Q ss_pred             -ceEEEEecCCCCC-CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECC-CCc
Q psy535          356 -NGFVISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINR-LTP  432 (460)
Q Consensus       356 -~~v~l~W~~~~~~-~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-L~p  432 (460)
                       +++.|+|++|... ++.+.+|+|+|+..+.                          .|.....    ..++.|.+ |.|
T Consensus       251 ~~~l~l~W~~P~~~~~~~~l~Yev~y~~~~~--------------------------~w~~~~~----~~~~~l~~~L~p  300 (380)
T 3lb6_C          251 SCEIKLKWSIPLGPIPARCFDYEIEIREDDT--------------------------TLVTATV----ENETYTLKTTNE  300 (380)
T ss_dssp             ----CEEEECCSSSCCSTTEEEEECC----------------------------------CCEE----SSSCC-------
T ss_pred             CCeEEEEECCCCCCCCcceEEEEEEEEeCCC--------------------------CceEecc----cceEEEeCccCC
Confidence             6999999998754 3578999999997432                          1221111    12456888 999


Q ss_pred             CceEEEEEEEeec-----CC-CCCCCceeEeecC
Q psy535          433 ATTYEFQVVGKNE-----LG-DGMLSNIVVVKTK  460 (460)
Q Consensus       433 ~~~Y~~~v~a~n~-----~G-~s~~s~~~~~~T~  460 (460)
                      ++.|.|+|+|...     .| +|+||+++.++|+
T Consensus       301 ~t~Y~~qVRa~~~~~~~~~g~WSeWS~~~~~~t~  334 (380)
T 3lb6_C          301 TRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGE  334 (380)
T ss_dssp             -----CCEEEEECTTTCSSCCCCCCCCC------
T ss_pred             CcEEEEEEEEEEcccCCCCCCCCCCCCCEEEeCC
Confidence            9999999999943     34 4788888887763

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.57  E-value=2.8e-14  Score=115.19  Aligned_cols=128  Identities=14%  Similarity=0.039  Sum_probs=88.6

Q ss_pred             ceEEEeeC-CeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCeeEE-cceeeeecceeeEEEEEEEecC-CCC
Q psy535           10 TRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAKVTF-TPTVQYLPFRLQGVVQCHIKAN-PTF   86 (460)
Q Consensus        10 ~r~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-~~~   86 (460)
                      ++..+... +.|.|.+++.+|+|.|.|.|.+..+.. ...+.|+|+.+|.... .+.  .+..|+.+ |.|.+.+. |.+
T Consensus        50 ~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~-~~~~~ltV~~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~  125 (210)
T 1gsm_A           50 GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTF-QHTVQLLVYAFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVD  125 (210)
T ss_dssp             CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCC
T ss_pred             CcEEecCCccEEEECccCcccCceEEEEEEeCCCce-EEEEEEEEEecCCCcEEccc--eEEeCCce-EEEEeCCCCCCC
Confidence            44444433 489999999999999999999987663 7789999999887543 443  55567778 99999986 432


Q ss_pred             ---CeEEEeeCCeecCcccc-c-cE-------------EEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           87 ---QYVTWTKDKRLLEPYQT-K-DI-------------VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        87 ---~~v~W~~~~~~~~~~~~-~-~~-------------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                         .+|+|+||+.++..... . ..             ...-.++|.+.....+|.+.|+|+|.+........
T Consensus       126 ~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~~~  198 (210)
T 1gsm_A          126 PNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELS  198 (210)
T ss_dssp             TTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEEEE
T ss_pred             CCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCccc
Confidence               47999999999854221 1 11             01111234444666677799999998876443333

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.57  E-value=5.2e-14  Score=120.51  Aligned_cols=257  Identities=13%  Similarity=0.115  Sum_probs=102.1

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      .+.|....+.+|+++.|+|.+.. +.+..+.|.-.  +..+.. ...     ....|.|.++..+  |.|+|++.. .| 
T Consensus         3 ~v~P~~~~V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~-~g~-----~~~~~~l~~v~~~--~~y~C~~~~-~~-   71 (291)
T 1mq8_A            3 SVSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLL-PGN-----NRKVYELSNVQED--SQPMCYSNC-PD-   71 (291)
T ss_dssp             EEECSEEEECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCCC-SCS-----SEEEEEEESCCSC--CCCEEEEEC-SS-
T ss_pred             EEeCCccEEcCCCeEEEEEeCCC-CCCccceEEecCCCccccc-CCC-----ceEEEEEEecccC--CeEEEEEEc-CC-
Confidence            35666778999999999999964 44445888641  111100 000     1114788888743  469999964 33 


Q ss_pred             cceeeEEEEEeeCCCcee-eCCCcccccCCCCeEEEEeeeeccCCCCCC--eeEEEcCCCccCCcccEE--EecceEEEc
Q psy535          138 QGSSGQMEVLVRKPPAFT-IKPEAMYQRKVGESVDMHCEAQEAEGTQKP--TITWQRRDGVALPKNRVK--IVGGNITIE  212 (460)
Q Consensus       138 ~~~~~~~~v~v~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~--~~~W~~~~~~~~~~~~~~--~~~~~l~i~  212 (460)
                      ......+.|.|..+|... +.+... .+..|+.++|.|.+.  .+.|..  .+.|++++. .+......  .....+.+.
T Consensus        72 ~~~~~~v~l~V~~~P~~v~I~~~~~-~~~~G~~~~LtC~v~--g~~P~~~l~itW~kg~~-~l~~~~~~~~~~~~~l~~~  147 (291)
T 1mq8_A           72 GQSTAKTFLTVYWTPERVELAPLPS-WQPVGKNLTLRCQVE--GGAPRANLTVVLLRGEK-ELKREPAVGEPAEVTTTVL  147 (291)
T ss_dssp             CEEEEECEEEECBCCSCCCBCCCCS-BCCSSCCCEEEEEEC--CCBSTTTEEEEEESSSS-EEEEEECCBTTEEEEEECC
T ss_pred             ccEEEEEEEEEecCCCCCEEecCCc-cccCCCCEEEEEEec--CccCCCCcEEEEEECCE-EeecccCCCCCceEEEEee
Confidence            346667778888776533 222222 478899999999994  455554  589999553 33211100  012245656


Q ss_pred             cccceeceEEEEEEecccce--------eeeeeEEEEecCCCCCCCcee--eeeecceEEEEeecCCCCCCCceeeEEEE
Q psy535          213 GLRRVDFGYYECVVSNEVAT--------IVQAAQLVVEGTQPHAPYNIT--GVATEFSVTLEWLPGYSGGPDLKQNYVIW  282 (460)
Q Consensus       213 ~~~~~~~g~y~C~a~n~~g~--------~~~~~~l~v~~~~p~~p~~~~--~~~~~~~~~l~w~~~~~~~~~~~~~~~~~  282 (460)
                      .....+.+.|+|.|.|..+.        .+....+.|...|+..+....  ....+..++|+|.  ..+.+++....+.|
T Consensus       148 ~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~--~~g~~P~~~~~v~w  225 (291)
T 1mq8_A          148 VRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCS--LDGLFPVSEAQVHL  225 (291)
T ss_dssp             CSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-------------------------------------------
T ss_pred             eeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEE--cCCCCCCcccEEEE
Confidence            55666667999999987653        233345555543333232211  1234678888887  34444431122444


Q ss_pred             EEecCCCCeeeeeccCCCCceEEEccC---cc--CccEEEEEEEEcCCCCCCCCCcEEEE
Q psy535          283 YREQGNKDWLPIPVTPPGSTQITINRL---TP--ATTYEFQVVGKNELGDGMLSNIVVVK  337 (460)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~i~~l---~~--~~~~~~~~~a~n~~G~~~~s~~~~~~  337 (460)
                      ++++.... .....   ....+.+..+   ..  ...|.|.|.|.|.......+..+.+.
T Consensus       226 ~~~g~~l~-~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~  281 (291)
T 1mq8_A          226 ALGDQRLN-PTVTY---GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY  281 (291)
T ss_dssp             ------------------------------------------------------------
T ss_pred             EECCEecC-ceeee---cCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEE
Confidence            44433211 11111   1223333333   23  44677888887744333344444443

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.57  E-value=6.7e-15  Score=126.70  Aligned_cols=127  Identities=14%  Similarity=0.165  Sum_probs=89.6

Q ss_pred             ceEEEee----CCeEEEeecCCCCCeeEEEEEEeCC-CCcceeeeEEEEec------CCeeEE-cceeeeecceeeEEEE
Q psy535           10 TRVVIKK----DGTLVINPVGSDDSGLYMCEVSNGI-GEPQAAQAYLNVEF------PAKVTF-TPTVQYLPFRLQGVVQ   77 (460)
Q Consensus        10 ~r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~l~   77 (460)
                      +|+.+..    +++|.|.+++.+|+|.|+|.+.+.. .........|.|..      +|.+.. .+....+.+|+.++|.
T Consensus        88 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~  167 (268)
T 3pl6_D           88 DRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLV  167 (268)
T ss_dssp             TTEEEECTTSSSEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEE
T ss_pred             CcEEEEecCCCEEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEE
Confidence            8999876    4589999999999999999999742 22224456777765      455433 3444456679999999


Q ss_pred             EEEecCCCCC-eEEEeeCCeecCccc--------------cccEEEeecCeEEEeecCCCC-CeEEEEEEEcCCCCc
Q psy535           78 CHIKANPTFQ-YVTWTKDKRLLEPYQ--------------TKDIVVMQNGSLLFTRVNQNH-QGRYTCTPYNAHGTQ  138 (460)
Q Consensus        78 C~~~~~~~~~-~v~W~~~~~~~~~~~--------------~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~g~~  138 (460)
                      |.+.+.++++ .++|+++|..+....              ...+.  ....|.|.....+| +|.|+|.|.+.....
T Consensus       168 C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~--~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~  242 (268)
T 3pl6_D          168 CLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYS--LSSRLRVSATFWQNPRNHFRCQVQFYGLSE  242 (268)
T ss_dssp             EEEEEEBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEE--EEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             EEECcccCCCeEEEEEECCEECCCCeEeccccccccccCCCCcEE--EEEEEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence            9999865543 799999998875321              11111  11346777777777 999999999876543

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.57  E-value=1.5e-14  Score=124.47  Aligned_cols=127  Identities=18%  Similarity=0.237  Sum_probs=86.7

Q ss_pred             ccceEEEeeCC---eEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe-----------------------eEE
Q psy535            8 LETRVVIKKDG---TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK-----------------------VTF   61 (460)
Q Consensus         8 ~~~r~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-----------------------~~~   61 (460)
                      .++|+.+..++   +|.|.+++.+|+|.|+|.+.+..+......+.|.|..++.                       ...
T Consensus        77 ~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~  156 (268)
T 1x9q_A           77 VPDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLD  156 (268)
T ss_dssp             SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEE
T ss_pred             CcccEEEEcCCCEEEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEE
Confidence            35788886543   8999999999999999999987543223445677654321                       123


Q ss_pred             cceeeeecceeeEEEEEEEecCCC-CCeEEEeeCC--eecC-----------------ccccccEEEeec-----CeEEE
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTKDK--RLLE-----------------PYQTKDIVVMQN-----GSLLF  116 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~-----~~l~i  116 (460)
                      .+....+.+|++++|.|.+.+.++ .+.+.|+|++  ..+.                 .....++....+     ..|.|
T Consensus       157 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I  236 (268)
T 1x9q_A          157 ETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQM  236 (268)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             CCCceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEE
Confidence            345567889999999999988753 2579999852  2210                 011234444322     46999


Q ss_pred             eecCCCCCeEEEEEEEcC
Q psy535          117 TRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus       117 ~~~~~~d~G~y~C~~~~~  134 (460)
                      .+++.+|+|.|+|.+.+.
T Consensus       237 ~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          237 NNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCCHHHCEEEEEEEccC
Confidence            999999999999999863

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.56  E-value=1.9e-14  Score=104.86  Aligned_cols=94  Identities=19%  Similarity=0.268  Sum_probs=73.5

Q ss_pred             CCCCCCcceEEEeec-ceEEEEecCCCCCCccc----eEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeee
Q psy535          341 PKPGPPRNVSVTEVN-NGFVISWQPPLERASLI----QYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI  415 (460)
Q Consensus       341 ~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i----~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (460)
                      .+|.+|.++++...+ ++|.|+|.+|...++.+    .+|.|+|+....                       ....+.  
T Consensus         7 ~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~~~~~~~~~~Y~v~y~~~~~-----------------------~~~~~~--   61 (113)
T 1x5j_A            7 GPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIP-----------------------ANTKYK--   61 (113)
T ss_dssp             CCCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSS-----------------------SSCCCE--
T ss_pred             CCCCCCcceEEEEecCCEEEEEecCCCCccccccCcCceEEEEEEECCC-----------------------CCeEEE--
Confidence            457899999999887 69999999987655444    499999986311                       000111  


Q ss_pred             ccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          416 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       416 ~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                       ......+.+.|.+|+|++.|.|+|+|+|..|.|++|..+.++|+
T Consensus        62 -~~~~~~~~~~i~gL~P~T~Y~f~V~A~~~~G~g~~S~~v~~~T~  105 (113)
T 1x5j_A           62 -NANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTF  105 (113)
T ss_dssp             -ECCBCSSEEEEESCCTTCEECCEEEEECSSCBCCCCCCCCEECC
T ss_pred             -EEecCcCEEEeCCCCCCcEEEEEEEEecCCccCCCcccEEeecc
Confidence             11235678999999999999999999999999999999999985

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.56  E-value=3.3e-14  Score=119.06  Aligned_cols=169  Identities=14%  Similarity=0.150  Sum_probs=101.9

Q ss_pred             EEcceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--ee---cC-----------ccccccEEEeec-----CeEEEe
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RL---LE-----------PYQTKDIVVMQN-----GSLLFT  117 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~---~~-----------~~~~~~~~~~~~-----~~l~i~  117 (460)
                      ...|....+.+|++++|.|.+.+.. ....+.|+|..  ..   +.           .....++....+     .+|.|.
T Consensus         5 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (230)
T 1ypz_F            5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (230)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             cccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEEC
Confidence            3456677888999999999997641 22369999842  11   10           001244444432     269999


Q ss_pred             ecCCCCCeEEEEEEEcC--CCCcceeeEEEEEee---------CCCceeeC-CCcccccCCCCeEEEEeeeeccCCCCC-
Q psy535          118 RVNQNHQGRYTCTPYNA--HGTQGSSGQMEVLVR---------KPPAFTIK-PEAMYQRKVGESVDMHCEAQEAEGTQK-  184 (460)
Q Consensus       118 ~~~~~d~G~y~C~~~~~--~g~~~~~~~~~v~v~---------~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~p~-  184 (460)
                      +++.+|+|.|.|.+.+.  ...........|.|.         .+|...+. |... .+..|+.++|.|.+.  ...|. 
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~-~v~~g~~~~L~C~~~--g~~P~~  161 (230)
T 1ypz_F           85 SLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVA-ETNLHKTGTYLCLLE--AFFPDV  161 (230)
T ss_dssp             SCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHH-HHHHHSCEEEEEEEE--EESSCC
T ss_pred             cCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCch-hhccCCcceEEEEEe--eecCCC
Confidence            99999999999999874  111111112234443         23433322 2222 345688999999983  33465 


Q ss_pred             CeeEEEcCCCccCCcc---cEEEe------cceEEEccccceeceEEEEEEeccccee
Q psy535          185 PTITWQRRDGVALPKN---RVKIV------GGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       185 ~~~~W~~~~~~~~~~~---~~~~~------~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      +.+.|++.++..+...   .....      ...|.|.....  .|.|+|.+.|..+..
T Consensus       162 ~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~--~~~ytC~v~~~~~~~  217 (230)
T 1ypz_F          162 IRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM--GKEHRCIVKHENNKG  217 (230)
T ss_dssp             CEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT--TSCEEEEEECSSCTT
T ss_pred             eEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC--CCEEEEEEEECCCCC
Confidence            5999998444433211   11111      23577776664  389999999976643

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=5.1e-14  Score=102.15  Aligned_cols=93  Identities=28%  Similarity=0.543  Sum_probs=74.8

Q ss_pred             CCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccC
Q psy535          340 GPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT  418 (460)
Q Consensus       340 ~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (460)
                      ..+|.+|.++.+...+ +++.|+|+++  .++.+.+|.|+|+..+..                        ..|..+.  
T Consensus         5 ~~~P~~P~~~~~~~~~~~sv~l~W~~~--~~~~i~~Y~v~~~~~~~~------------------------~~~~~~~--   56 (106)
T 2dju_A            5 SSGPKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTE------------------------GPFQEVD--   56 (106)
T ss_dssp             CCSCCCCEEEEEEEEETTEEEEEEECC--CSSCCSEEEEEEEETTCC------------------------SCCCCBC--
T ss_pred             CcCCcCCCCcEEEeccCCEEEEEEcCC--CCCCceEEEEEEEECCCC------------------------CCeEEcc--
Confidence            3468999999998866 6999999988  367899999999976530                        0122211  


Q ss_pred             CCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          419 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       419 ~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ....+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus        57 ~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~~~~S~~~~~~T~   98 (106)
T 2dju_A           57 GVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTG   98 (106)
T ss_dssp             CCCSSEEEEESCCTTCEEEEEEEEECSSCBCCCCCCEEEECC
T ss_pred             CCCccEEEEeCCCCCcEEEEEEEEEeCCccCCCcccEEeEcC
Confidence            135678999999999999999999999999999999998874

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.56  E-value=2e-14  Score=138.25  Aligned_cols=166  Identities=17%  Similarity=0.243  Sum_probs=109.3

Q ss_pred             ceeeeecceeeEEEEEEE-ecCCCCCeEEEeeCCeecCc----------cccccEEEeecCeEEEeecCCCCCeEEEEEE
Q psy535           63 PTVQYLPFRLQGVVQCHI-KANPTFQYVTWTKDKRLLEP----------YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~-~~~~~~~~v~W~~~~~~~~~----------~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  131 (460)
                      .....+.+|++++|.|.+ .+.|.+ .|+|+|++..+..          ....+..+..+++|.|.+++.+|+|.|+|.+
T Consensus       373 ~~~~~~~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~  451 (581)
T 3o3u_N          373 AQNITARIGEPLVLKCKGAPKKPPQ-RLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQA  451 (581)
T ss_dssp             CEEEEEETTSCEEECCTTCCSSSSC-EEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEE
T ss_pred             hcccceecCCcEEEeeeecCCCCCc-eEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEE
Confidence            344567889999999999 565554 8999998763311          1134556667778999999999999999999


Q ss_pred             EcCCCCcceeeEEEEEeeCCCce-eeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-cccEEE-----
Q psy535          132 YNAHGTQGSSGQMEVLVRKPPAF-TIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-KNRVKI-----  204 (460)
Q Consensus       132 ~~~~g~~~~~~~~~v~v~~~p~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-~~~~~~-----  204 (460)
                      .|..+.. ....+.|.|..+|.. .+.+........+..+.|.|.+.  .+.|.|.+.|++++..+.. ..+..+     
T Consensus       452 ~n~~~~~-~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~--~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~  528 (581)
T 3o3u_N          452 MNRNGKE-TKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSE--GSYPAGTLSWHLDGKPLVPNEKGVSVKEQTR  528 (581)
T ss_dssp             ECTTSCE-EEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEE--EEBSCCEEEEEETTEECCTTSTTEEEEEEEE
T ss_pred             EcCCCce-eEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECC--CCCCCCeEEEEECCEECCCCCCeEEEEeeeE
Confidence            9988775 244556666554322 22222221233344556799983  3368999999995433221 122211     


Q ss_pred             ---------ecceEEEcccc-ceeceEEEEEEecccce
Q psy535          205 ---------VGGNITIEGLR-RVDFGYYECVVSNEVAT  232 (460)
Q Consensus       205 ---------~~~~l~i~~~~-~~~~g~y~C~a~n~~g~  232 (460)
                               ..++|.|..+. ..+.+.|+|.+.|..+.
T Consensus       529 ~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          529 RHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             ECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             EcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence                     11358888887 44478999999998643

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.56  E-value=7e-14  Score=117.89  Aligned_cols=167  Identities=13%  Similarity=0.175  Sum_probs=100.4

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eecC-------------ccccccEEEee----cCeEEEeecC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLLE-------------PYQTKDIVVMQ----NGSLLFTRVN  120 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~-------------~~~~~~~~~~~----~~~l~i~~~~  120 (460)
                      ...|....+.+|++++|.|.+.. +. ..+.|+|++  ....             .....++....    +.+|.|.+++
T Consensus         3 ~q~p~~v~v~~G~~v~L~C~~~~-~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   80 (238)
T 1bec_A            3 TQSPRNKVAVTGGKVTLSCQQTN-NH-NNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT   80 (238)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CC-SEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred             ccCCCeeEEeCCCcEEEEEEeCC-CC-ceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence            34577778899999999999854 33 479999853  1110             00123443332    2379999999


Q ss_pred             CCCCeEEEEEEEcCCC---Ccc--eeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCC-CCC-eeEE
Q psy535          121 QNHQGRYTCTPYNAHG---TQG--SSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-QKP-TITW  189 (460)
Q Consensus       121 ~~d~G~y~C~~~~~~g---~~~--~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p~~-~~~W  189 (460)
                      .+|+|.|+|.+.+..+   ...  ....+.|...    .+|.+.+.+.....+..|+.++|.|.+   .+. |.+ .+.|
T Consensus        81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~---~g~~P~~~~v~W  157 (238)
T 1bec_A           81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLA---RGFFPDHVELSW  157 (238)
T ss_dssp             GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEE---EEEBSCCEEEEE
T ss_pred             cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEE---eeEeCCCcEEEE
Confidence            9999999999998642   111  1223444321    256555433222245679999999999   453 654 9999


Q ss_pred             EcCCCccCCccc-----EEEecceEEEc---cccce---e-ceEEEEEEecccc
Q psy535          190 QRRDGVALPKNR-----VKIVGGNITIE---GLRRV---D-FGYYECVVSNEVA  231 (460)
Q Consensus       190 ~~~~~~~~~~~~-----~~~~~~~l~i~---~~~~~---~-~g~y~C~a~n~~g  231 (460)
                      ++++........     ....++.+.+.   .+...   | .+.|+|.+.|...
T Consensus       158 ~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          158 WVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             EETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             EECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            994433322211     11223333321   22222   3 5789999998643

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.55  E-value=1.2e-14  Score=104.28  Aligned_cols=92  Identities=20%  Similarity=0.317  Sum_probs=73.1

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC--eEEEeecCCCCCeEEEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C~~~  132 (460)
                      .+|.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+............++  .|.|.++..+|+|.|+|.|.
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAP-DVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAK   82 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCC-EEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCC-EEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEE
Confidence            46677777888889999999999999998776 7999999999876444444444444  79999999999999999999


Q ss_pred             cCCCCcceeeEEEEEee
Q psy535          133 NAHGTQGSSGQMEVLVR  149 (460)
Q Consensus       133 ~~~g~~~~~~~~~v~v~  149 (460)
                      |..|.....  +.|.|.
T Consensus        83 n~~g~~~~~--~~l~V~   97 (100)
T 2kdg_A           83 NRAGEATFT--VQLDVL   97 (100)
T ss_dssp             ETTEEEEEE--EEEEEE
T ss_pred             cCCCeEEEE--EEEEEE
Confidence            999885444  444443

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=9.2e-15  Score=105.46  Aligned_cols=92  Identities=30%  Similarity=0.442  Sum_probs=75.2

Q ss_pred             CCCCCCcceEEEeec-ceEEEEecCC--CCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535          341 PKPGPPRNVSVTEVN-NGFVISWQPP--LERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV  417 (460)
Q Consensus       341 ~~P~~p~~~~~~~~~-~~v~l~W~~~--~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (460)
                      .+|.+|.++.+...+ +++.|+|++|  ...++.+.+|.|+|+..+..                         .|..+  
T Consensus         7 ~pp~~P~~l~~~~~~~~si~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~-------------------------~~~~~--   59 (103)
T 2edy_A            7 GPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQ-------------------------QELQN--   59 (103)
T ss_dssp             CCSCCCEEEECSSBCSSCEECEEECCCTTSCSSCCCEEEEEEEETTSC-------------------------CEEEE--
T ss_pred             CCCCCCeeeEEEecCCCEEEEEECCCCCcCCCCcEeEEEEEEEECCCC-------------------------ccEEE--
Confidence            346799999998776 6999999999  45678999999999976530                         11111  


Q ss_pred             CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                       ....+.+.|.+|.|++.|.|+|+|+|..|.|++|+++.++|+
T Consensus        60 -~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  101 (103)
T 2edy_A           60 -ITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRTM  101 (103)
T ss_dssp             -EESSSCCEECSCCTTCCEEEECCEECSSCBCCCCCCCCCCCC
T ss_pred             -cCCcceEEEcCCCCCCEEEEEEEEECCCCCCCCCCCEEEEec
Confidence             135678899999999999999999999999999999999885

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.9e-14  Score=105.74  Aligned_cols=91  Identities=22%  Similarity=0.423  Sum_probs=72.5

Q ss_pred             CCCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          341 PKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       341 ~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      .+|.+|.++++...++++.|+|++|...++.|.+|.|+|+....|..                           ......
T Consensus        16 ~~P~~P~~l~~~~~~~sv~l~W~~P~~~ng~i~gY~i~y~~~~~~~~---------------------------~~~~~~   68 (116)
T 2edb_A           16 QVPDQPSSLHVRPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAE---------------------------TVRVDS   68 (116)
T ss_dssp             SCCCCCSCEEEEECSSCEEEEECCCSCTTBCCCEEEEEEEESSTTSE---------------------------EEEEET
T ss_pred             CCCCCCCCeEEEECCCEEEEEEcCCCCCCCceeEEEEEEEeCCCCeE---------------------------EEEeCC
Confidence            56899999999887789999999998778899999999986332110                           011124


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      ..++++|.+|.|++.|.|+|+|+|..|.|+++. ..++|
T Consensus        69 ~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~~~-~~~~T  106 (116)
T 2edb_A           69 KQRYYSIERLESSSHYVISLKAFNNAGEGVPLY-ESATT  106 (116)
T ss_dssp             TCCEEEECSCCSSSBEEEEEEEEETTEECSCEE-ECCBC
T ss_pred             CeeEEEeCCCCCCCEEEEEEEEEeCCccCCCCc-ceeec
Confidence            678999999999999999999999999998765 34444

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.55  E-value=1e-14  Score=120.08  Aligned_cols=120  Identities=16%  Similarity=0.167  Sum_probs=82.9

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEE--EEecCCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEee
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYL--NVEFPAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTK   93 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~   93 (460)
                      +.|.|.+++.+|+|.|+|.|.+..+.. ....+.+  .+..+|.+.+.+.......|+.++|.|.+.|. |++..|+|+|
T Consensus        68 ~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k  147 (207)
T 2vol_A           68 SELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWES  147 (207)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEE
Confidence            479999999999999999999987753 1223333  44567777665544333458899999999985 4435899999


Q ss_pred             CCeecCccccccEEEeecCe------EEEeecCCCCCeEEEEEEEcCCCC
Q psy535           94 DKRLLEPYQTKDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      +|..+............+++      |.|.....+|.|.|+|.|.|....
T Consensus       148 ~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          148 NGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             TTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             CCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence            99987532222222334443      445555556899999999987643

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=3.8e-14  Score=101.57  Aligned_cols=93  Identities=18%  Similarity=0.345  Sum_probs=75.5

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      .+|.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+.. ...++....+++|.|.++..+|+|.|+|.|.|.
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p-~v~W~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~   84 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPLP-VISWLKEGFTFPG-RDPRATIQEQGTLQIKNLRISDTGTYTCVATSS   84 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSCC-EEEEEESSSEESS-SCSSCEECTTCCEEEESCCTTTCCEEEEEEECS
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCC-EEEEEECCEECCC-CCCCEEEcCCCEEEEccCCcccCEEEEEEEEcC
Confidence            46777778888889999999999999998876 7999999988863 334555667788999999999999999999999


Q ss_pred             CCCcceeeEEEEEeeCC
Q psy535          135 HGTQGSSGQMEVLVRKP  151 (460)
Q Consensus       135 ~g~~~~~~~~~v~v~~~  151 (460)
                      .|.....  +.|.|..+
T Consensus        85 ~g~~~~~--~~l~V~~~   99 (100)
T 2edj_A           85 SGETSWS--AVLDVTES   99 (100)
T ss_dssp             SCCCBCC--EEEEEESC
T ss_pred             CCCEEEE--EEEEEecC
Confidence            8876554  44444444

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.55  E-value=4.1e-14  Score=127.70  Aligned_cols=159  Identities=14%  Similarity=0.173  Sum_probs=105.5

Q ss_pred             ecceeeEEEEEEEecC---CCCCeEEEeeCCeecCcccccc------EEEeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           68 LPFRLQGVVQCHIKAN---PTFQYVTWTKDKRLLEPYQTKD------IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        68 ~~~g~~~~l~C~~~~~---~~~~~v~W~~~~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      +.+|++++|.|.+.+.   |....|+|+|++..+.......      -.......|.|..+..+|+|.|+|.+.+..+..
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            6779999999999987   4334799999986653111000      011123369999999999999999999877654


Q ss_pred             ceeeEEEE--EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCCC-C-CCeeEEEcCCCccCCccc----EEEec----
Q psy535          139 GSSGQMEV--LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGT-Q-KPTITWQRRDGVALPKNR----VKIVG----  206 (460)
Q Consensus       139 ~~~~~~~v--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-p-~~~~~W~~~~~~~~~~~~----~~~~~----  206 (460)
                      .....+.+  .+..+|.+.+.+... ....|+.++|.|.+   .|. | .+.+.|++++. .+....    ....+    
T Consensus       260 ~~~~~v~~~~~~~~~P~v~v~~~~~-~~~~g~~~~L~C~~---~g~~P~~i~v~W~k~g~-~~~~~~~~~~~~~~dgty~  334 (376)
T 2aty_A          260 PIEKTISKTKGRPKAPQLYTIPPPK-EQMAKDKVSLTCMI---TDFFPEDITVEWQWNGQ-PAENYKNTQPIMNTNESYF  334 (376)
T ss_pred             ceEEEEcCCCCCCcCCeEEeeCCCH-HHhcCCceEEEEEE---EEeECCCcEEEEEECCE-ECCCeEeCCceECCCCCEE
Confidence            34444433  455688887777664 34568899999999   554 3 46899999554 332211    00112    


Q ss_pred             --ceEEEccccceeceEEEEEEecccc
Q psy535          207 --GNITIEGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       207 --~~l~i~~~~~~~~g~y~C~a~n~~g  231 (460)
                        ..|.|......+.|.|+|.+.|...
T Consensus       335 ~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          335 VYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             EEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence              2355655555678999999998643

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.54  E-value=3.9e-14  Score=101.32  Aligned_cols=90  Identities=13%  Similarity=0.106  Sum_probs=70.1

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC--eEEEeecCCCCCeEEEEEEEc
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      +|.+...+....+.+|+++.|.|.+.|.|.+ .+.|++++..+.............+  .|.|.++..+|+|.|+|.|.|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDP-ECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeCCC-EEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            5677777888889999999999999998776 7999999999874322222222333  699999999999999999999


Q ss_pred             CCCCcceeeEEEE
Q psy535          134 AHGTQGSSGQMEV  146 (460)
Q Consensus       134 ~~g~~~~~~~~~v  146 (460)
                      ..|.......+.|
T Consensus        84 ~~g~~~~~~~l~V   96 (99)
T 1g1c_A           84 IAGETSSHAFLLV   96 (99)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEE
Confidence            9988655444443

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.54  E-value=6e-14  Score=103.19  Aligned_cols=97  Identities=18%  Similarity=0.191  Sum_probs=76.0

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee---cCeEEEeecCCCCCeEEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~  131 (460)
                      .||.|...+....+.+|+++.|.|.+.+.|.+ .++|+|++..+...  .++.+..   ...|.|.++..+|+|.|+|.|
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~~~~~~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPI-TCTWMKFRKQIQES--EHMKVENSENGSKLTILAARQEHCGCYTLLV   82 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSC-EEEEEESSSBCCCS--SSEEEEECSSEEEEEETTCCTTTCEEEEEEE
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCC-EEEEEECCEECcCC--CCEEEEEcCCEEEEEECCCChhcCEEEEEEE
Confidence            46777778888889999999999999998776 79999999988642  3444433   347999999999999999999


Q ss_pred             EcCCCCcceeeEEEEEeeCCCceee
Q psy535          132 YNAHGTQGSSGQMEVLVRKPPAFTI  156 (460)
Q Consensus       132 ~~~~g~~~~~~~~~v~v~~~p~~~~  156 (460)
                      .|..|....  .+.|.|..+|....
T Consensus        83 ~N~~g~~~~--~~~l~V~~~p~~P~  105 (114)
T 2cqv_A           83 ENKLGSRQA--QVNLTVVDKPDPPA  105 (114)
T ss_dssp             ECSSCEEEC--CEEEEEECSCSCCC
T ss_pred             EECCCcEEE--EEEEEEECCCCCCC
Confidence            999886544  55666666665433

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1

Probab=99.54  E-value=2.5e-14  Score=104.50  Aligned_cols=99  Identities=24%  Similarity=0.490  Sum_probs=65.0

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEc---CCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTD---GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV  417 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (460)
                      +|++|.   +...+ ++++|+|.+|.+++++|++|.|+|+..   +.|..+.....      +       ....|   ..
T Consensus         5 pP~~P~---v~~~~~~sv~L~W~~P~~~G~pI~~Y~Ve~r~~~~~~~w~~~~~~~~------~-------~~~~~---~~   65 (115)
T 2ic2_A            5 PPTPPN---VTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIP------Y-------GKPKW---NS   65 (115)
T ss_dssp             CCCCCE---EEECC---EEEEEEEECCSSCCEEEEEEEEEECC---CCEEEEEEEE------C-------CSCSC---SS
T ss_pred             CCCcCE---eEEEeCCEEEEEEcCCCCCCCCCceEEEEEEECCCCCCceECccccc------c-------ccccc---cc
Confidence            477776   44544 699999999988788999999999976   23543322000      0       00000   00


Q ss_pred             CCCCcceEEECCCCcCceEEEEEEEeecCCCC---CCCceeEeec
Q psy535          418 TPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVVKT  459 (460)
Q Consensus       418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s---~~s~~~~~~T  459 (460)
                      .....++++|.+|.|++.|+|||+|+|..|.|   ++|..+.++|
T Consensus        66 ~~~~~~~~~v~~L~p~t~Y~FRV~A~N~~G~~~pS~~S~~~~~~~  110 (115)
T 2ic2_A           66 ELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP  110 (115)
T ss_dssp             SSEEEEEEEECSCCSSEEEEEEEEEEETTSCEEECCCCCCEEECC
T ss_pred             ccCceeEEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCCCCEEeCC
Confidence            11234678999999999999999999999975   4555555544

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.54  E-value=1.7e-14  Score=122.01  Aligned_cols=136  Identities=15%  Similarity=0.208  Sum_probs=90.9

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCC-C-----cceeeeEEEEec-------CCeeEEc-ceeeee
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIG-E-----PQAAQAYLNVEF-------PAKVTFT-PTVQYL   68 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~-~-----~~~~~~~l~v~~-------~p~~~~~-~~~~~~   68 (460)
                      .++|+.+..+     ++|.|.+++.+|+|.|.|.+.+... .     .....+.|.|..       +|.+.+. |....+
T Consensus        65 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~  144 (242)
T 1hxm_B           65 PSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAET  144 (242)
T ss_dssp             CTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGG
T ss_pred             cCCeEEEEecCCCcEEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhc
Confidence            5689998752     4899999999999999999998631 1     112346788875       2333322 333445


Q ss_pred             cceeeEEEEEEEecC-CCCCeEEEeeCCe-ecCccccccEEEe-----ecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           69 PFRLQGVVQCHIKAN-PTFQYVTWTKDKR-LLEPYQTKDIVVM-----QNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        69 ~~g~~~~l~C~~~~~-~~~~~v~W~~~~~-~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      .+|+.++|.|.+.+. |.++.|.|++++. .+...........     ..+.|.|.++.. | |.|+|.|.|..+.....
T Consensus       145 ~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~  222 (242)
T 1hxm_B          145 KLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVD  222 (242)
T ss_dssp             GSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSC
T ss_pred             ccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCce
Confidence            579999999999986 5445899999987 5532111111111     113577876664 5 99999999988876555


Q ss_pred             eEEE
Q psy535          142 GQME  145 (460)
Q Consensus       142 ~~~~  145 (460)
                      ..+.
T Consensus       223 ~~~~  226 (242)
T 1hxm_B          223 QEII  226 (242)
T ss_dssp             EEEE
T ss_pred             eEee
Confidence            4443

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.54  E-value=3e-14  Score=104.02  Aligned_cols=91  Identities=20%  Similarity=0.241  Sum_probs=67.5

Q ss_pred             CCCCcceEEEeec-ceEEEEecCCCCCC----cc-ceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeec
Q psy535          343 PGPPRNVSVTEVN-NGFVISWQPPLERA----SL-IQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP  416 (460)
Q Consensus       343 P~~p~~~~~~~~~-~~v~l~W~~~~~~~----~~-i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (460)
                      |.+|..+.+.... ++|.|+|++|.+.+    .. |.+|.|+ +.+..                        ...|..+.
T Consensus        16 p~~P~~p~v~~vt~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve-~~~~~------------------------~~~~~~v~   70 (120)
T 1wfu_A           16 LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIE-EEDPK------------------------MHSYGVIY   70 (120)
T ss_dssp             CCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEE-EECTT------------------------TCCEEEEE
T ss_pred             CCCCCCceeceEECCEEEEEECCCccCCccCCCCceEEEEEE-EecCC------------------------CCceEEEe
Confidence            5555555555555 69999999998754    34 9999999 43211                        11232222


Q ss_pred             cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      .  ...+.++|.+|.|++.|.|||+|+|..|.|++|+.+.++|.
T Consensus        71 ~--~~~t~~~v~gL~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~  112 (120)
T 1wfu_A           71 T--GYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATT  112 (120)
T ss_dssp             E--ESCSEEEEESCCTTCEEEEEEEEECSSSCEEECCCEEEECC
T ss_pred             c--CCccEEEECCCCCCCEEEEEEEEECCCCCCCCCccEeeEcC
Confidence            1  23567999999999999999999999999999999999884

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}

Probab=99.54  E-value=7.8e-14  Score=99.87  Aligned_cols=90  Identities=20%  Similarity=0.328  Sum_probs=71.3

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      .|.+|.++++...+ +++.|+|++|...++.+.+|.|+|+..+.-                      +.....   ....
T Consensus         7 ~~~~P~~l~v~~~t~~Sv~lsW~~p~~~~g~i~~Y~v~y~~~~~~----------------------~~~~~~---~v~~   61 (103)
T 3t04_D            7 VSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGD----------------------SPVQEF---TVPG   61 (103)
T ss_dssp             CCCCCCSCEEEEEETTEEEEECTTTTTTSCCCCEEEEEEEETTCS----------------------SCCEEE---EEET
T ss_pred             cCCCCceeEEEecCCCEEEEEccCCCCCCCccceEEEEEEECCCC----------------------CccEEE---EcCC
Confidence            58899999998877 699999999987788999999999975320                      000011   1124


Q ss_pred             CcceEEECCCCcCceEEEEEEEeec--CCCCCCCceeEe
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNE--LGDGMLSNIVVV  457 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~--~G~s~~s~~~~~  457 (460)
                      ..++++|.+|.|++.|.|+|+|.|.  .|.|+ |.++.+
T Consensus        62 ~~ts~~l~~L~p~t~Y~~~V~A~~~~~~G~~~-S~p~~~   99 (103)
T 3t04_D           62 YYSTATISGLKPGVDYTITVYAYDTFFPGYEP-NSPISI   99 (103)
T ss_dssp             TCCEEEECSCCTTCCEEEEEEEESCCCTTCCC-SCCEEE
T ss_pred             CcCEEEeCCCCCCCEEEEEEEEEeCCCCCCCC-CCCEEE
Confidence            5789999999999999999999999  99998 777654

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.54  E-value=3.6e-14  Score=103.10  Aligned_cols=94  Identities=23%  Similarity=0.373  Sum_probs=72.2

Q ss_pred             ccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeec
Q psy535          338 TKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP  416 (460)
Q Consensus       338 ~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (460)
                      +.+.+|.+|. +.+...+ +++.|+|++|...++.+.+|.|+|+..+.                         ..|..+ 
T Consensus         3 T~~~~P~~p~-~~v~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~-------------------------~~~~~~-   55 (107)
T 2dn7_A            3 SGSSGPGRPT-MMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADE-------------------------ARPNTI-   55 (107)
T ss_dssp             TCCCCCCCCE-EEEEECSTTEEEEEEECCSSCSSCCCEEEEEEEETTC-------------------------SSCEEE-
T ss_pred             CCCCCCCCCc-EeEEecCCCEEEEEECCCCCCCCceeEEEEEEEECCC-------------------------CCCEEE-
Confidence            3455687777 6666555 69999999998778899999999997543                         012111 


Q ss_pred             cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      ......++++|.+|.|++.|.|+|+|+|..|.|++|. ..+.|
T Consensus        56 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~-~~~~T   97 (107)
T 2dn7_A           56 DFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFE-KEIRT   97 (107)
T ss_dssp             EEETTCCEEEEECCCTTCEEEEEEEEEETTEEEEEEE-EEEEC
T ss_pred             EeCCCccEEEeCCCCCCCEEEEEEEEEcCCcccCCee-eEEeC
Confidence            1124667899999999999999999999999999998 45555

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.54  E-value=5.2e-14  Score=120.43  Aligned_cols=116  Identities=17%  Similarity=0.194  Sum_probs=84.3

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEecC-----------------CeeEEcceeeeecceeeEEEEE
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVEFP-----------------AKVTFTPTVQYLPFRLQGVVQC   78 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~-----------------p~~~~~~~~~~~~~g~~~~l~C   78 (460)
                      ++|.|.+++.+|+|.|+|.+.+..+.  .......|.|..+                 +.+...|....+.+|++++|.|
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C  158 (259)
T 3omz_A           79 LRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNC  158 (259)
T ss_dssp             CEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECC
T ss_pred             EEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEE
Confidence            47999999999999999999987652  2244567777653                 4556667778899999999999


Q ss_pred             EEecCCCCCeEEEeeCCe--ecCc----------cccccEEEee-----cCeEEEeecCCCCCeEEEEEEEc
Q psy535           79 HIKANPTFQYVTWTKDKR--LLEP----------YQTKDIVVMQ-----NGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        79 ~~~~~~~~~~v~W~~~~~--~~~~----------~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      .+.+..+.+.+.|+|.+.  .+..          ....++....     ...|.|.+++.+|+|.|+|.+.+
T Consensus       159 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          159 LYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE  230 (259)
T ss_dssp             EEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred             ECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence            988753445899998431  1100          0123333331     23599999999999999999975

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.54  E-value=4.1e-14  Score=119.59  Aligned_cols=131  Identities=15%  Similarity=0.234  Sum_probs=89.6

Q ss_pred             ccceEEEeeC----CeEEEeecCCCCCeeEEEEEEeC--CCCcceeeeEEEEe------cCCeeEE-cceeeeecceeeE
Q psy535            8 LETRVVIKKD----GTLVINPVGSDDSGLYMCEVSNG--IGEPQAAQAYLNVE------FPAKVTF-TPTVQYLPFRLQG   74 (460)
Q Consensus         8 ~~~r~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~~~l~v~------~~p~~~~-~~~~~~~~~g~~~   74 (460)
                      ..+|+.+..+    ++|.|.+++.+|+|.|+|.+.+.  ..........|.|.      .+|.+.. .+....+.+|+.+
T Consensus        61 ~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v  140 (240)
T 3q5y_A           61 LPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKA  140 (240)
T ss_dssp             CCTTEEEEECTTSCEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEE
T ss_pred             cCCeEEEEeCCCCEEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCce
Confidence            3478888764    38999999999999999999832  22222344677776      3455443 3444455678999


Q ss_pred             EEEEEEecC-CCCCeEEEeeCCeecCccccc--cEEEeecC------eEEEeecCCCC-CeEEEEEEEcCCCCc
Q psy535           75 VVQCHIKAN-PTFQYVTWTKDKRLLEPYQTK--DIVVMQNG------SLLFTRVNQNH-QGRYTCTPYNAHGTQ  138 (460)
Q Consensus        75 ~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~------~l~i~~~~~~d-~G~y~C~~~~~~g~~  138 (460)
                      +|.|.+.+. |++..+.|+++|..+......  ......++      .|.|.....+| .|.|+|.|.|.....
T Consensus       141 ~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~  214 (240)
T 3q5y_A          141 TLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSE  214 (240)
T ss_dssp             EEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             EEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence            999999984 444379999999988532111  11222233      38888888888 779999999865443

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.6e-14  Score=105.06  Aligned_cols=92  Identities=20%  Similarity=0.278  Sum_probs=69.4

Q ss_pred             CCCCCc-ceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          342 KPGPPR-NVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       342 ~P~~p~-~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      +|.+|. ++.....+ +++.|+|++|.+.+++|.+|.|+|+..+.                         ..|..+.  .
T Consensus         9 ~P~~P~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~-------------------------~~~~~~~--~   61 (110)
T 2db8_A            9 VPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNG-------------------------GQFREVY--V   61 (110)
T ss_dssp             CCCCCBCCCCCCSCSSSEEEECCBCCTTCCSCCSEEEEEECCSSS-------------------------SCCEEEE--E
T ss_pred             CCCCccccceeeccCCCEEEEEECCCCCCCCCccEEEEEEEeCCC-------------------------CceEEEE--e
Confidence            344443 34333333 69999999998877899999999986431                         1122221  1


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ...+.++|.+|.|++.|.|||+|+|..|.|++|+.+.++|.
T Consensus        62 ~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~  102 (110)
T 2db8_A           62 GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTS  102 (110)
T ss_dssp             ESCSCEEEECCCSSSCCEEEEEEECSSCBCCCCSCEECCCC
T ss_pred             CCcCEEEECCCCCCCEEEEEEEEEeCCcCCCCCCCEEEEcC
Confidence            24678999999999999999999999999999999998874

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.53  E-value=3.1e-14  Score=105.31  Aligned_cols=96  Identities=29%  Similarity=0.436  Sum_probs=76.3

Q ss_pred             CCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccC
Q psy535          340 GPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT  418 (460)
Q Consensus       340 ~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (460)
                      ..+|.+|.++++.... +++.|+|+++.+.++++.+|.|+|+..+.                        ...|..+.. 
T Consensus        13 ~~~P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~------------------------~~~~~~~~~-   67 (117)
T 1uem_A           13 SDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSV------------------------SNSWQTVAN-   67 (117)
T ss_dssp             CCSCBCCCCCEEEEECSSCEEEECCCCBCSSSCCCEEEEEEEETTT------------------------EEEEEEEEE-
T ss_pred             CCCccCCCCCEEEEecCCEEEEEEeCCCCCCcCceEEEEEEEECCC------------------------CCceeEccc-
Confidence            4568999999998766 69999999998778899999999997531                        123333221 


Q ss_pred             CCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeE-eecC
Q psy535          419 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV-VKTK  460 (460)
Q Consensus       419 ~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~-~~T~  460 (460)
                      ....+.+.|.+|.|++.|.|+|+|+|..|.|++|.... ++|+
T Consensus        68 ~~~~~~~~i~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~v~t~  110 (117)
T 1uem_A           68 HVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ  110 (117)
T ss_dssp             EECSSEEEECSCCTTCEEEEEEEEEETTEEEEECCCCCCEECC
T ss_pred             ccCcCEEEECCCCCCCEEEEEEEEECCCccCCCcCCCccEEcc
Confidence            13567899999999999999999999999999988776 6663

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A

Probab=99.53  E-value=1.6e-13  Score=114.42  Aligned_cols=182  Identities=15%  Similarity=0.161  Sum_probs=117.2

Q ss_pred             CCCceeee-eecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeee-----cc-CCCCceEEE--ccCccCccEEEE
Q psy535          248 APYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP-----VT-PPGSTQITI--NRLTPATTYEFQ  318 (460)
Q Consensus       248 ~p~~~~~~-~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~i--~~l~~~~~~~~~  318 (460)
                      .|.++.+. .....+.++|.++...+..+ ..|.+.|+..+. .|....     .. ......+.+  .++.....|.|+
T Consensus        23 ~P~nl~C~~~~~~~l~C~W~~~~~~~~~~-~~y~l~y~~~~~-~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~~~y~~~  100 (227)
T 1eer_B           23 GPEELLCFTERLEDLVCFWEEAASAGVGP-GQYSFSYQLEDE-PWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELR  100 (227)
T ss_dssp             STTSCEEEBSSSSCCEEEEEESCCSSCCT-TSEEEEEEETTS-CCEEECEEEEEETTTEEEEEEECCGGGCCBSSCEEEE
T ss_pred             CCcCCeEECCCCCEEEEEecCCCCCCCCC-ccEEEEEEcCCC-CceeccceeccCCCCCceEEEEeCCCcceeeEEEEEE
Confidence            56666643 34568999999877544333 578888876532 232221     00 111223343  356677889999


Q ss_pred             EEEEcCCCCCCCCCcEEEEccC-CCCCCCcceEEEee--cceEEEEecCCCCC-CccceEEEEEEEEcCCeeeeccccCC
Q psy535          319 VVGKNELGDGMLSNIVVVKTKG-PKPGPPRNVSVTEV--NNGFVISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIR  394 (460)
Q Consensus       319 ~~a~n~~G~~~~s~~~~~~~~~-~~P~~p~~~~~~~~--~~~v~l~W~~~~~~-~~~i~~y~i~~~~~~~~~~~~~~~~~  394 (460)
                      +.|.|..+    .....+.... ..|.||.++++...  ...+.|+|++|... ...+..|+|+|+..+.          
T Consensus       101 V~a~~~~~----~~~~~~~~~~~v~p~pP~~l~~~~~~~~~~l~v~W~~P~~~~~~~~l~Yev~y~~~~~----------  166 (227)
T 1eer_B          101 VTAASGAP----RYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQG----------  166 (227)
T ss_dssp             EEETTSCE----EEEEEECGGGSEECCCCEEEEEEECSSTTCEEEEEECCSSCSCGGGEEEEEEEECCSS----------
T ss_pred             EEecCCCc----cEEEEEEeeeeEccCcCcceEEEEcCCCCeEEEEEcCCCCcccccceEEEEEEEcCCC----------
Confidence            99976432    1122233333 24899999999875  35899999998653 2248999999996542          


Q ss_pred             CCcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeec----CC-CCCCCceeEeecC
Q psy535          395 PEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE----LG-DGMLSNIVVVKTK  460 (460)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~----~G-~s~~s~~~~~~T~  460 (460)
                                     ..|..........+.+.|.+|.|++.|.|+|+|...    .| +|+||.++.++|+
T Consensus       167 ---------------~~w~~~~~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~~~g~wS~WS~~~~~~t~  222 (227)
T 1eer_B          167 ---------------AGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLTP  222 (227)
T ss_dssp             ---------------SCCCCEEEECTTCCEEEECCCCSSCEEEEEEEEEECTTTCCEECCCCCCCEEEEC-
T ss_pred             ---------------CCcEEEEEEecCceEEEEcccCCCCeEEEEEEEeECCCCCCCcCCCCCCCEEEECc
Confidence                           012110011234678999999999999999999975    23 4999999998874

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.53  E-value=5.9e-14  Score=116.34  Aligned_cols=128  Identities=18%  Similarity=0.228  Sum_probs=85.7

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEec----CCeeEEcceeeeecceeeEEE
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQGVV   76 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l   76 (460)
                      ..+|+.+..+     .+|.|.+++.+|+|.|+|.+.+..+.  .....+.|.|..    +|.+...+....+.+|+.++|
T Consensus        63 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L  142 (215)
T 1c5d_H           63 LKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTL  142 (215)
T ss_dssp             TGGGEEEEEETTTTEEEEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEE
T ss_pred             ccCcEEEEeeCCCceEEEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEE
Confidence            4689998753     28999999999999999999986432  123446788863    455544332334567999999


Q ss_pred             EEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCeEE----EeecCCCCCeEEEEEEEcCCCCc
Q psy535           77 QCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL----FTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        77 ~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~----i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      .|.+.+. |.+..|.|++++..+........  ...+.+.    |.....+| |.|+|.|.|..+..
T Consensus       143 ~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~--~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~  206 (215)
T 1c5d_H          143 GCLVKGYFPEPVTVTWNSGALSSDVHTFPAV--LQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASST  206 (215)
T ss_dssp             EEEEEEEBSSCCEEEEGGGTTCCSCCBCCCE--EETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTE
T ss_pred             EEEEeeeEcCCcEEEEccCCccCceEecCcc--cCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCc
Confidence            9999987 55448999999876432111111  1223222    22344456 99999999987764

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.53  E-value=2e-14  Score=122.07  Aligned_cols=129  Identities=12%  Similarity=0.179  Sum_probs=90.9

Q ss_pred             ccceEEEeeC----CeEEEeecCCCCCeeEEEEEEeCCCC---cceeeeEEEEec------CCeeEE-cceeeeecceee
Q psy535            8 LETRVVIKKD----GTLVINPVGSDDSGLYMCEVSNGIGE---PQAAQAYLNVEF------PAKVTF-TPTVQYLPFRLQ   73 (460)
Q Consensus         8 ~~~r~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~   73 (460)
                      ..+|+.+..+    ++|.|.+++.+|+|.|+|.+.+..+.   .....+.|.|..      +|.+.. .|....+.+|+.
T Consensus        63 ~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~  142 (246)
T 4dzb_B           63 EKDKFLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQK  142 (246)
T ss_dssp             CGGGEEEEEEETTEEEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSE
T ss_pred             cCCcEEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCc
Confidence            3488988753    38999999999999999999876431   123456777763      455443 344445667999


Q ss_pred             EEEEEEEecCCCC-CeEEEeeCCeecCcccc--------------ccEEEeecCeEEEeecCCCC-CeEEEEEEEcCCCC
Q psy535           74 GVVQCHIKANPTF-QYVTWTKDKRLLEPYQT--------------KDIVVMQNGSLLFTRVNQNH-QGRYTCTPYNAHGT  137 (460)
Q Consensus        74 ~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~--------------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~g~  137 (460)
                      ++|.|.+.+.+++ ..++|+++|..+.....              ..+.  ....|.|.....+| .|.|+|.|.|....
T Consensus       143 v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~--~~s~l~i~~~~~~d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          143 ATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYA--LSSRLRVSATFWQNPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             EEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEE--EEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EEEEEEEccCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEE--EEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence            9999999987654 37999999998863211              1111  11237888888888 99999999987654


Q ss_pred             c
Q psy535          138 Q  138 (460)
Q Consensus       138 ~  138 (460)
                      .
T Consensus       221 ~  221 (246)
T 4dzb_B          221 E  221 (246)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.52  E-value=5.7e-14  Score=119.73  Aligned_cols=129  Identities=16%  Similarity=0.144  Sum_probs=87.9

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC--cceeeeEEEEec----CCeeEEcceeeeecceeeEEE
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE--PQAAQAYLNVEF----PAKVTFTPTVQYLPFRLQGVV   76 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l   76 (460)
                      ..+|+.+..+     ++|.|.+++.+|+|.|.|.+.+..+.  .....+.|.|..    +|.+...+....+.+|+.++|
T Consensus        70 ~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L  149 (261)
T 2xqy_G           70 FKDKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTL  149 (261)
T ss_dssp             GTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEE
T ss_pred             cCCcEEEEecCCCCEEEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEE
Confidence            3579998763     48999999999999999999986431  112346788864    355443332234567999999


Q ss_pred             EEEEecC-CCCCeEEEeeCCeecCccccccEE----EeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           77 QCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIV----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        77 ~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      .|.+.+. |.+..|.|++++..+.......+.    ....+.|.|.++..+| |.|+|.|.|....
T Consensus       150 ~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~  214 (261)
T 2xqy_G          150 GCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  214 (261)
T ss_dssp             EEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             EEEEEeEeCCCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence            9999885 554489999998765321111111    1123468898888888 9999999985443

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A

Probab=99.52  E-value=5.5e-13  Score=122.30  Aligned_cols=136  Identities=18%  Similarity=0.259  Sum_probs=95.4

Q ss_pred             CCCCCCCceeeeeecceEEEEeecCCCCCC-----CceeeEEEEEEecCCCCeeeeeccCCCCceEEEc--cCccCccEE
Q psy535          244 TQPHAPYNITGVATEFSVTLEWLPGYSGGP-----DLKQNYVIWYREQGNKDWLPIPVTPPGSTQITIN--RLTPATTYE  316 (460)
Q Consensus       244 ~~p~~p~~~~~~~~~~~~~l~w~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~l~~~~~~~  316 (460)
                      ..|.||.++........+.|+|.++.....     .....|.+.|+..+ ..|............+.+.  +|.|+..|.
T Consensus       107 v~p~pP~~l~v~~~~~~~~l~W~~p~~~~~~~~~~~~~l~Y~v~yr~~~-~~w~~~~~~~~~~~~~~~~~~~L~p~~~Y~  185 (419)
T 2gys_A          107 VQPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQ-DSWEDAAILLSNTSQATLGPEHLMPSSTYV  185 (419)
T ss_dssp             BCCCCCEEEEEEEETTEEEEEEECCC-----CCSCGGGEEEEEEEEETT-SCSTTCEEEEESSSEEEECTTTCCTTCEEE
T ss_pred             ccCCCCCceEEEecCCeEEEEECCCccccccchhccCceEEEEEEccCC-CChhheeeecccceEEEechhhcCCCCeEE
Confidence            367888888766555799999998755321     23478999999876 5665444321133455565  899999999


Q ss_pred             EEEEEEcCCC------CCCCCCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEE
Q psy535          317 FQVVGKNELG------DGMLSNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRT  381 (460)
Q Consensus       317 ~~~~a~n~~G------~~~~s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~  381 (460)
                      ++|+|.|..|      ++.+|..+.+.+.+..|.+|.++.+.... +.+.+.|+++....+ ..+|.|+|+.
T Consensus       186 ~rVra~~~~g~~~~G~wS~WS~~~~~~t~~~~~~~p~~l~c~~~~~~~l~c~W~~~~~~~~-~~~y~l~y~~  256 (419)
T 2gys_A          186 ARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVAS-SVSFGLFYKP  256 (419)
T ss_dssp             EEEEEEECTTSSCCBCCCCCCCCEEEECCCCCTTSCEEEEEEECSSSEEEEEEEEEHHHHT-TCCEEEEEEC
T ss_pred             EEEEEecCCCCCCCcccCCCCCceeeeccccccCCCceEEEEECCceEEEeEEECCCCCCC-ceeEEEEEEe
Confidence            9999999642      35567888888888778899999988666 589999998632222 2446666654

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.52  E-value=5.2e-14  Score=100.67  Aligned_cols=89  Identities=18%  Similarity=0.358  Sum_probs=70.3

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~  131 (460)
                      .||.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+.... .++....++   +|.|.++..+|+|.|+|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   81 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKP-VVSWLRNRQPVRPDQ-RRFAEEAEGGLCRLRILAAERGDAGFYTCKA   81 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCC-EEEEEETTEECCCBT-TEEEEECGGGEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCC-EEEEEECCEECCCCC-CEEEEECCCCEEEEEEccCCcCCCEEEEEEE
Confidence            35677777888889999999999999998876 799999999886532 333333333   5999999999999999999


Q ss_pred             EcCCCCcceeeEEE
Q psy535          132 YNAHGTQGSSGQME  145 (460)
Q Consensus       132 ~~~~g~~~~~~~~~  145 (460)
                      .|..|.......+.
T Consensus        82 ~N~~g~~~~~~~l~   95 (99)
T 1u2h_A           82 VNEYGARQCEARLE   95 (99)
T ss_dssp             EETTEEEEEEEEEE
T ss_pred             EECCCceeEEEEEE
Confidence            99998865544433

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.52  E-value=1.9e-14  Score=122.18  Aligned_cols=127  Identities=13%  Similarity=0.158  Sum_probs=74.2

Q ss_pred             ccceEEEeeC-----CeEEEeecCCCCCeeEEEEEEeCCCC------------cceeeeEEEEec----CCeeEEcceee
Q psy535            8 LETRVVIKKD-----GTLVINPVGSDDSGLYMCEVSNGIGE------------PQAAQAYLNVEF----PAKVTFTPTVQ   66 (460)
Q Consensus         8 ~~~r~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~~~------------~~~~~~~l~v~~----~p~~~~~~~~~   66 (460)
                      ..+|+++..+     .+|.|.+++.+|+|.|.|.+.+..|.            .....+.|.|..    +|.+...+...
T Consensus        64 ~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~  143 (257)
T 3bn9_D           64 VKGRFTISRDNSKNTLYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSS  143 (257)
T ss_dssp             GTTTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC--
T ss_pred             cCCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcc
Confidence            4689998764     38999999999999999999987641            112345788864    45544333223


Q ss_pred             eecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           67 YLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      .+.+|+.++|.|.+.+. |.+..|+|++++..+......... ..+      +.|.|.++..+| |.|+|.|.|...
T Consensus       144 ~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~~~~~~~-~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~  218 (257)
T 3bn9_D          144 KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVL-QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  218 (257)
T ss_dssp             ---------CCCEEEEEBSSCCEEEETTTTCCSSCEECCCEE-CTTSCEEEEEECCCC--------CEEEEEEEGGG
T ss_pred             cccCCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcEecCCeE-cCCCCEEEEEEEEEcccccCC-CeEEEEEEecCC
Confidence            35679999999999986 554489999998764321111111 122      247777777778 999999998543

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=5e-14  Score=100.35  Aligned_cols=89  Identities=20%  Similarity=0.294  Sum_probs=69.8

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~  132 (460)
                      +|.|...+....+.+|+++.|.|.+  .|.+ .++|+|+|..+..  ..++.+..++   .|.|.++..+|+|.|+|.|.
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p-~v~W~k~g~~l~~--~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SENI-PGKWTKNGLPVQE--SDRLKVVQKGRIHKLVIANALTEDEGDYVFAPD   81 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSCC-CEEEEETTEECCC--CSSEEEEECSSEEEEEESSCCGGGCSEEEEEES
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCCC-eEEEEECCEECCC--CCcEEEEEeCCEEEEEECCCChhhCEEEEEEEc
Confidence            5677777888899999999999999  5555 7999999999874  3455555554   69999999999999999999


Q ss_pred             cCCCCcceeeEEEEEeeCCCc
Q psy535          133 NAHGTQGSSGQMEVLVRKPPA  153 (460)
Q Consensus       133 ~~~g~~~~~~~~~v~v~~~p~  153 (460)
                      |.  .  .+....|.|..+|.
T Consensus        82 N~--~--~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           82 AY--N--VTLPAKVHVISGPS   98 (100)
T ss_dssp             SS--C--CCEEEEEEEECCSC
T ss_pred             CC--C--eeEEEEEEEeCCCC
Confidence            86  2  34455666666764

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.52  E-value=1.1e-13  Score=101.78  Aligned_cols=96  Identities=21%  Similarity=0.345  Sum_probs=77.2

Q ss_pred             ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC----eEEEeecCCCCCeEEEE
Q psy535           54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG----SLLFTRVNQNHQGRYTC  129 (460)
Q Consensus        54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~G~y~C  129 (460)
                      ..+|.|...|....+.+|++++|.|.+.+.|.+ .+.|++++..+... ..++.+..++    +|.|.++..+|+|.|+|
T Consensus        13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p-~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (116)
T 2kkq_A           13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPP-KLFWKRNNEMVQFN-TDRISLYQDNTGRVTLLIKDVNKKDAGWYTV   90 (116)
T ss_dssp             CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCC-EEEEEETTEECCCC-BTTEEEEECTTCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCC-EEEEEECCEECcCC-CCeEEEEeCCCCeEEEEECCCCcccCEEEEE
Confidence            457888888999999999999999999998876 89999999988642 3445444433    79999999999999999


Q ss_pred             EEEcCCCCcceeeEEEEEeeCCCc
Q psy535          130 TPYNAHGTQGSSGQMEVLVRKPPA  153 (460)
Q Consensus       130 ~~~~~~g~~~~~~~~~v~v~~~p~  153 (460)
                      .|.|..|...  ..+.|.|..+|.
T Consensus        91 ~a~N~~G~~~--~~~~l~V~~~p~  112 (116)
T 2kkq_A           91 SAVNEAGVTT--CNTRLDVTARPN  112 (116)
T ss_dssp             EEEETTEEEE--EEEEEEEECCSC
T ss_pred             EEEcCCCeEE--EEEEEEEeCCCC
Confidence            9999988754  455666666654

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=1.9e-14  Score=102.97  Aligned_cols=90  Identities=18%  Similarity=0.235  Sum_probs=71.5

Q ss_pred             EecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEE
Q psy535           53 VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        53 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  132 (460)
                      +..+|.+...|....+.+|+++.|.|.+.+.|.+ .+.|++++..+...  ..........|.|.++..+|+|.|+|.|.
T Consensus         8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~g~~~~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   84 (99)
T 2yr3_A            8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVP-RITWLLNGQPIQYA--RSTCEAGVAELHIQDALPEDHGTYTCLAE   84 (99)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEEECEEEEESCC-CCEEEESSSBCSSC--CCEEETTEEEEEECSCCTTCCBCEEEEEE
T ss_pred             cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCC-eEEEEECCEECccc--ceEeeCCeEEEEECCCChhhCEEEEEEEE
Confidence            4567888888888889999999999999998876 79999999887632  22333333579999999999999999999


Q ss_pred             cCCCCcceeeEEE
Q psy535          133 NAHGTQGSSGQME  145 (460)
Q Consensus       133 ~~~g~~~~~~~~~  145 (460)
                      |..|....+..+.
T Consensus        85 N~~g~~~~~~~l~   97 (99)
T 2yr3_A           85 NALGQVSCSAWVT   97 (99)
T ss_dssp             CSSCEEEEECCEE
T ss_pred             ECCCeEEEEEEEE
Confidence            9998765444443

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.51  E-value=1.5e-13  Score=115.36  Aligned_cols=172  Identities=11%  Similarity=0.150  Sum_probs=98.7

Q ss_pred             ceeeeecceeeEEEEEEEecCCC-CCeE--EEeeCC--ee---c--------------CccccccEEEeecC-----eEE
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPT-FQYV--TWTKDK--RL---L--------------EPYQTKDIVVMQNG-----SLL  115 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~-~~~v--~W~~~~--~~---~--------------~~~~~~~~~~~~~~-----~l~  115 (460)
                      |....+.+|++++|.|.+.+.+. ...+  .|++..  ..   +              ......|+....+.     +|.
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (232)
T 3qhz_H            7 SGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLT   86 (232)
T ss_dssp             ECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred             CCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEE
Confidence            33456788999999999976321 1234  999832  11   1              01112355444332     599


Q ss_pred             EeecCCCCCeEEEEEEEcCCCC------cceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCCC-C
Q psy535          116 FTRVNQNHQGRYTCTPYNAHGT------QGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-K  184 (460)
Q Consensus       116 i~~~~~~d~G~y~C~~~~~~g~------~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~  184 (460)
                      |.+++.+|+|.|.|.+.+..+.      ........|.|.    .+|.+...+... .+..|+.++|.|.+.  ...| .
T Consensus        87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~--~~~P~~  163 (232)
T 3qhz_H           87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLVK--DYFPEP  163 (232)
T ss_dssp             ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC--------CEEEEEEEEE--EEBSSC
T ss_pred             ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccc-cccCCCcEEEEEEEe--eEeCCC
Confidence            9999999999999999875311      111122234443    345554222222 356799999999994  2234 3


Q ss_pred             CeeEEEcCCCccCCc---------ccEEEecceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535          185 PTITWQRRDGVALPK---------NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       185 ~~~~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      ..+.|++++. ....         .........|.|......+ |.|+|.+.|..+.......+
T Consensus       164 ~~v~W~~~g~-~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l  225 (232)
T 3qhz_H          164 VTVSWNSGAL-TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRV  225 (232)
T ss_dssp             CEEEEGGGTB-CTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEEC
T ss_pred             eEEEEEECCE-ecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEe
Confidence            4688998543 2110         0111112357788887778 99999999987765544443

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.51  E-value=9.5e-14  Score=133.60  Aligned_cols=130  Identities=18%  Similarity=0.325  Sum_probs=94.5

Q ss_pred             cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEEecCCe-eEEcceeeeecceee-EEEEEEEecC-
Q psy535            7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK-VTFTPTVQYLPFRLQ-GVVQCHIKAN-   83 (460)
Q Consensus         7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~-~~l~C~~~~~-   83 (460)
                      ...+|+.+..+++|.|.+++.+|+|.|+|.+.|..+......+.|.|..+|. +.+.+....+.++.. +.|.|.+.+. 
T Consensus       421 ~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~  500 (581)
T 3o3u_N          421 PWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSY  500 (581)
T ss_dssp             GGGGTSEECTTSCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEB
T ss_pred             CcCCcEEEcCCceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCC
Confidence            3477899988999999999999999999999998887546778899976443 233333333445544 4679999884 


Q ss_pred             CCCCeEEEeeCCeecCccccccEEE----ee---------cCeEEEeecC-CCCCeEEEEEEEcCCCCc
Q psy535           84 PTFQYVTWTKDKRLLEPYQTKDIVV----MQ---------NGSLLFTRVN-QNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        84 ~~~~~v~W~~~~~~~~~~~~~~~~~----~~---------~~~l~i~~~~-~~d~G~y~C~~~~~~g~~  138 (460)
                      |.+ .|+|+++|..+.... ..+.+    ..         .++|.|.+++ .++.|.|+|.|.|..+..
T Consensus       501 P~~-~i~W~~~g~~l~~~~-~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~  567 (581)
T 3o3u_N          501 PAG-TLSWHLDGKPLVPNE-KGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH  567 (581)
T ss_dssp             SCC-EEEEEETTEECCTTS-TTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred             CCC-eEEEEECCEECCCCC-CeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence            655 899999999986532 22211    11         1358999888 455899999999986543

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.51  E-value=3.7e-14  Score=102.29  Aligned_cols=90  Identities=16%  Similarity=0.273  Sum_probs=71.4

Q ss_pred             ecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEE
Q psy535           54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~  130 (460)
                      ..+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|+|++..+...  .++.....+   .|.|.++..+|+|.|+|.
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   82 (103)
T 3qp3_A            6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTA-EVKWYHNGVELQES--SKIHYTNTSGVLTLEILDCHTDDSGTYRAV   82 (103)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEEESCC-EEEEEETTEECCCC--SSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCC-EEEEEECCEECCCC--CCEEEEECCCEEEEEEcCCCcccCEEEEEE
Confidence            446777778888889999999999999998876 79999999998743  333333322   699999999999999999


Q ss_pred             EEcCCCCcceeeEEEE
Q psy535          131 PYNAHGTQGSSGQMEV  146 (460)
Q Consensus       131 ~~~~~g~~~~~~~~~v  146 (460)
                      |.|..|.......+.|
T Consensus        83 a~N~~G~~~~~~~l~V   98 (103)
T 3qp3_A           83 CTNYKGEASDYATLDV   98 (103)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEEEE
Confidence            9999988654444433

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.51  E-value=4.7e-14  Score=119.65  Aligned_cols=127  Identities=16%  Similarity=0.232  Sum_probs=89.1

Q ss_pred             ceEEEeeCC----eEEEeecCCCCCeeEEEEEEeCC---CCcceeeeEEEEe------cCCeeE-EcceeeeecceeeEE
Q psy535           10 TRVVIKKDG----TLVINPVGSDDSGLYMCEVSNGI---GEPQAAQAYLNVE------FPAKVT-FTPTVQYLPFRLQGV   75 (460)
Q Consensus        10 ~r~~~~~~~----~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~------~~p~~~-~~~~~~~~~~g~~~~   75 (460)
                      +|+.+..++    +|.|.+++.+|+|.|+|.+.+..   .........|.|.      .+|.+. ..|....+.+|+.++
T Consensus        64 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~  143 (245)
T 4ei6_B           64 DQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKAT  143 (245)
T ss_dssp             TTEEEECCTTSCEEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEE
T ss_pred             CCEEEEeccCceEEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceE
Confidence            889887643    89999999999999999999632   1222345677776      355544 334444566799999


Q ss_pred             EEEEEecCCCC-CeEEEeeCCeecCcccc--------------ccEEEeecCeEEEeecCCCC-CeEEEEEEEcCCCCc
Q psy535           76 VQCHIKANPTF-QYVTWTKDKRLLEPYQT--------------KDIVVMQNGSLLFTRVNQNH-QGRYTCTPYNAHGTQ  138 (460)
Q Consensus        76 l~C~~~~~~~~-~~v~W~~~~~~~~~~~~--------------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~g~~  138 (460)
                      |.|.+.+.+++ ..+.|+++|..+.....              ..+.  ....|.|.....+| .|.|+|.|.+.....
T Consensus       144 l~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~--~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~  220 (245)
T 4ei6_B          144 LVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYA--LSSRLRVSATFWQNPRNHFRCQVQFYGLSE  220 (245)
T ss_dssp             EEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEE--EEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             EEEEEeeEeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEE--EEEEEEEcHHHhccCCCeEEEEEEECCCCC
Confidence            99999885443 37999999998763211              1111  11247888887788 999999999865443

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.51  E-value=1.3e-14  Score=120.53  Aligned_cols=120  Identities=18%  Similarity=0.182  Sum_probs=80.9

Q ss_pred             CeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEE--EEecCCeeEEcceeeeecceeeEEEEEEEec-CCCCCeEEEee
Q psy535           18 GTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYL--NVEFPAKVTFTPTVQYLPFRLQGVVQCHIKA-NPTFQYVTWTK   93 (460)
Q Consensus        18 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~v~W~~   93 (460)
                      ++|.|.+++.+|+|.|+|.|.+..+.. ....+.+  .+..+|.+.+.+......+|+.++|.|.+.| .|++..|+|+|
T Consensus        76 ~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k  155 (218)
T 2rgs_A           76 STLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTS  155 (218)
T ss_dssp             EEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEE
Confidence            479999999999999999999986643 1222221  3456777765554333335899999999998 45544899999


Q ss_pred             CCeecCccccccEEEeecCeE------EEeecCCCCCeEEEEEEEcCCCC
Q psy535           94 DKRLLEPYQTKDIVVMQNGSL------LFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l------~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      +|..+............++++      .|.....+|.|.|+|.|.|....
T Consensus       156 ~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          156 NGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             TTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             CCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            999875322222222344443      34443444699999999987654

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.51  E-value=4.1e-14  Score=118.85  Aligned_cols=131  Identities=15%  Similarity=0.165  Sum_probs=84.4

Q ss_pred             cccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCC-------CcceeeeEEEEe----cCCeeEEcceeeeecc
Q psy535            7 SLETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIG-------EPQAAQAYLNVE----FPAKVTFTPTVQYLPF   70 (460)
Q Consensus         7 ~~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~-------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~   70 (460)
                      ...+|+.+..++     +|.|.+++.+|+|.|.|.+.+..+       ........|.|.    .+|.+...+....+..
T Consensus        67 ~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~  146 (232)
T 3qhz_H           67 SLKTRLTISKDTSKSQVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTS  146 (232)
T ss_dssp             TTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC------
T ss_pred             cccCceEEEeccCCCEEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccC
Confidence            345799998653     799999999999999999987531       112344567775    3455543333344556


Q ss_pred             eeeEEEEEEEecCCC-CCeEEEeeCCeecCccccccEE-----EeecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           71 RLQGVVQCHIKANPT-FQYVTWTKDKRLLEPYQTKDIV-----VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        71 g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      |+.++|.|.+.+.++ +..+.|++++..+.........     ....+.|.|......| |.|+|.|.+..+..
T Consensus       147 g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~  219 (232)
T 3qhz_H          147 GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  219 (232)
T ss_dssp             -CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTE
T ss_pred             CCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCc
Confidence            999999999988543 4568899998654221111110     0112358888888888 99999999876654

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=5.7e-14  Score=104.13  Aligned_cols=97  Identities=24%  Similarity=0.442  Sum_probs=74.0

Q ss_pred             CCcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCC-ccceEEEEEEEEcCCeeeeccccCCCCcccccccceecC
Q psy535          331 SNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERA-SLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQG  408 (460)
Q Consensus       331 s~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~-~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (460)
                      +..+.+... .+|.+|.++++...+ +++.|+|++|...+ .++.+|.|+|+..+.                        
T Consensus         7 ~~~~~v~~~-~~P~~P~~l~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~------------------------   61 (120)
T 2yux_A            7 GASIDIQII-DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKS------------------------   61 (120)
T ss_dssp             CCCCCCCCC-CCCCCCSCEEEEEEETTEEEEEECCCSCCCSSCCCCCCEEEEETTT------------------------
T ss_pred             cEEEEEEee-cCCCcCCCCEEEEecCCEEEEEEcCCCcCCCCCceEEEEEEEECCC------------------------
Confidence            333444433 458999999998766 69999999997654 689999999997542                        


Q ss_pred             ceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCce
Q psy535          409 NKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI  454 (460)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~  454 (460)
                       ..|..+.. ....+.+++.+|.|++.|.|||+|.|..|.|++|..
T Consensus        62 -~~w~~~~~-~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~  105 (120)
T 2yux_A           62 -MEWFTVIE-HYHRTSATITELVIGNEYYFRVFSENMCGLSEDATM  105 (120)
T ss_dssp             -CCCEEEES-SCCSSCCEECCCCSSEEEEEEECCCSSSCSCSSCEE
T ss_pred             -CceEEeee-cCCcCEEEECCCCCCCEEEEEEEEeeCCcCCCCccC
Confidence             12332221 235678899999999999999999999999999874

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.51  E-value=3.1e-14  Score=103.74  Aligned_cols=100  Identities=19%  Similarity=0.230  Sum_probs=65.2

Q ss_pred             eEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEE
Q psy535           49 AYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYT  128 (460)
Q Consensus        49 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~  128 (460)
                      +.|.+..+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+.... .......++.|.|.++..+|+|.|+
T Consensus         3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~   80 (108)
T 3kvq_A            3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPP-QIMWFKDNETLVEDS-GIVLKDGNRNLTIRRVRKEDEGLYT   80 (108)
T ss_dssp             --------CCCBSCCCCEEEETTCCEEEECBCC----C-CEEEEESSSBCCCBT-TEEEETTTTEEEECSCCGGGCEEEE
T ss_pred             eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCC-eEEEEECCeEcccCC-CeEEeCCCcEEEEeecCcccCEEEE
Confidence            45667778888888888899999999999999988776 699999998876422 2222334568999999999999999


Q ss_pred             EEEEcCCCCcceeeEEEEEeeCCC
Q psy535          129 CTPYNAHGTQGSSGQMEVLVRKPP  152 (460)
Q Consensus       129 C~~~~~~g~~~~~~~~~v~v~~~p  152 (460)
                      |.|.|..|.....  +.|.|..+|
T Consensus        81 C~a~n~~g~~~~~--~~l~V~~~~  102 (108)
T 3kvq_A           81 CQACSVLGCAKVE--AFFIIEGAQ  102 (108)
T ss_dssp             EEEC----CEEEE--EEEEEEC--
T ss_pred             EEEEeCCCceEEE--EEEEEeCCC
Confidence            9999998886554  455555554

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.51  E-value=2.9e-15  Score=124.04  Aligned_cols=164  Identities=15%  Similarity=0.203  Sum_probs=103.2

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCC--CCeEEEeeCCeecCccc--------cccEEEeecCeEEEeecCCCCCeEEEE
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPT--FQYVTWTKDKRLLEPYQ--------TKDIVVMQNGSLLFTRVNQNHQGRYTC  129 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~G~y~C  129 (460)
                      ...|....+.+|++++|.|.+.+.++  +..|.| + +..+....        ...+  ...+.|.|.++..+|+|.|+|
T Consensus         8 ~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~--~~~~~L~I~~~~~~D~g~Y~C   83 (214)
T 1ow0_A            8 LHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCY--SVSSVLPGCAEPWNHGKTFTC   83 (214)
T ss_dssp             EECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCC--CEEEECTTTHHHHHHTCEEEE
T ss_pred             EECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcE--EEEEEEEEeHHHcCCCCeEEE
Confidence            34466677889999999999998754  247999 4 33332110        0111  123358888888899999999


Q ss_pred             EEEcCCCCcceeeEEEE-EeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCC-CeeEEEcCCCccCCccc-----
Q psy535          130 TPYNAHGTQGSSGQMEV-LVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQK-PTITWQRRDGVALPKNR-----  201 (460)
Q Consensus       130 ~~~~~~g~~~~~~~~~v-~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~-~~~~W~~~~~~~~~~~~-----  201 (460)
                      .+.+..+.......+.+ .+..+|.+.+.+.....+..|+.++|.|.+   .| .|. +.+.|++++ ..+....     
T Consensus        84 ~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~---~g~~P~~~~v~W~k~g-~~l~~~~~~~~~  159 (214)
T 1ow0_A           84 TAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLA---RGFSPKDVLVRWLQGS-QELPREKYLTWA  159 (214)
T ss_dssp             EECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEE---EEESSSCCEEEEEETT-EECCGGGSEECC
T ss_pred             EEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEE---eeeECCCcEEEEEECC-EECCCCceeecC
Confidence            99987765433333321 345677776554333246789999999999   45 454 599999954 4443321     


Q ss_pred             -EEE---ecceEEE------ccccceeceEEEEEEecccc
Q psy535          202 -VKI---VGGNITI------EGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       202 -~~~---~~~~l~i------~~~~~~~~g~y~C~a~n~~g  231 (460)
                       ...   .++++.+      ......+.|.|+|.|.|...
T Consensus       160 ~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          160 SRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             CEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             CcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence             111   2333333      22222347899999998654

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.50  E-value=1.1e-13  Score=98.94  Aligned_cols=89  Identities=17%  Similarity=0.224  Sum_probs=71.1

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~  131 (460)
                      .+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++..+...  .++....++   .|.|.++..+|+|.|+|.|
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p-~v~W~~~g~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a   81 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRP-TAIWTKDGKAITQG--GKYKLSEDKGGFFLEIHKTDTSDSGLYTCTV   81 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCC-EEEEEETTEECCSS--SSEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCC-EEEEEECCEECcCC--CCEEEEEeCCEEEEEECCCCcccCEEEEEEE
Confidence            35677777888889999999999999998876 79999999988642  444444433   6999999999999999999


Q ss_pred             EcCCCCcceeeEEEE
Q psy535          132 YNAHGTQGSSGQMEV  146 (460)
Q Consensus       132 ~~~~g~~~~~~~~~v  146 (460)
                      .|..|.......+.|
T Consensus        82 ~n~~g~~~~~~~l~V   96 (99)
T 3puc_A           82 KNSAGSVSSSCKLTI   96 (99)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EeCCCcEeEEEEEEE
Confidence            999888655555444

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.50  E-value=1.1e-13  Score=101.31  Aligned_cols=92  Identities=16%  Similarity=0.169  Sum_probs=66.0

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCC--CCCeEEEeeCCee-cCccccccEEEe---------ecCeEEEeecCCCCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANP--TFQYVTWTKDKRL-LEPYQTKDIVVM---------QNGSLLFTRVNQNHQ  124 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~v~W~~~~~~-~~~~~~~~~~~~---------~~~~l~i~~~~~~d~  124 (460)
                      +.|...|....+.+|++++|.|.+.+.+  +.+.|+|||++.. +......++.+.         ....|.|.++...|+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence            3466788888999999999999998752  3348999997421 110011222221         135799999999999


Q ss_pred             eEEEEEEEcCCCCcceeeEEEEEe
Q psy535          125 GRYTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus       125 G~y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      |.|+|+|.|..|..++.+.|+|.+
T Consensus        88 G~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           88 GNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             EEEEEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEe
Confidence            999999999988876666666654

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.50  E-value=4.4e-14  Score=99.60  Aligned_cols=88  Identities=18%  Similarity=0.252  Sum_probs=67.5

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eecCccccccEEE-eecCeEEEeecCCCCCeEEEEEEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLLEPYQTKDIVV-MQNGSLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~  132 (460)
                      +|.+...+....+.+|+.+.|.|.+.|.|.+ .++|++++  ..+...  ..... ...+.|.|.++..+|+|.|+|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   78 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDP-TATWTVGDSGAALAPE--LLVDAKSSTTSIFFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSC-EEEEECSTTTCBCSTT--SEEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCC-EEEEEECCCCcccCCc--EEEEecCCEEEEEECCCChhcCEEEEEEEE
Confidence            5677667778889999999999999999876 79999999  777532  11211 122469999999999999999999


Q ss_pred             cCCCCcceeeEEEEEe
Q psy535          133 NAHGTQGSSGQMEVLV  148 (460)
Q Consensus       133 ~~~g~~~~~~~~~v~v  148 (460)
                      |..|....  .+.|.|
T Consensus        79 N~~G~~~~--~~~l~V   92 (93)
T 1wit_A           79 NELGEDEA--IFEVIV   92 (93)
T ss_dssp             ETTEEEEE--EEEEEE
T ss_pred             cCCCeEEE--EEEEEE
Confidence            99986544  444443

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.50  E-value=5.4e-14  Score=121.15  Aligned_cols=126  Identities=15%  Similarity=0.207  Sum_probs=87.3

Q ss_pred             eEEEee----CCeEEEeecCCCCCeeEEEEEEeCCC---CcceeeeEEEEec------CCeeEE-cceeeeecceeeEEE
Q psy535           11 RVVIKK----DGTLVINPVGSDDSGLYMCEVSNGIG---EPQAAQAYLNVEF------PAKVTF-TPTVQYLPFRLQGVV   76 (460)
Q Consensus        11 r~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~l   76 (460)
                      |+.+..    +++|.|.+++.+|+|.|+|.+.+..+   ......+.|.|..      +|.+.+ .+....+..|+.++|
T Consensus        90 r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L  169 (270)
T 3qib_D           90 RFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATL  169 (270)
T ss_dssp             HEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEE
T ss_pred             cEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEE
Confidence            888865    34899999999999999999996432   1123446777765      455443 333344556999999


Q ss_pred             EEEEec-CCCCCeEEEeeCCeecCccc--------------cccEEEeecCeEEEeecCCCC-CeEEEEEEEcCCCCc
Q psy535           77 QCHIKA-NPTFQYVTWTKDKRLLEPYQ--------------TKDIVVMQNGSLLFTRVNQNH-QGRYTCTPYNAHGTQ  138 (460)
Q Consensus        77 ~C~~~~-~~~~~~v~W~~~~~~~~~~~--------------~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~g~~  138 (460)
                      .|.+.+ .|.+..++|+++|..+....              ...+.  ....|.|.....+| .|.|+|.|.+.....
T Consensus       170 ~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~  245 (270)
T 3qib_D          170 VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYA--LSSRLRVSATFWQNPRNHFRCQVQFYGLSE  245 (270)
T ss_dssp             EEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEE--EEEEEEEEHHHHHSTTCEEEEEEEECCBCT
T ss_pred             EEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEE--EEEEEEEcHHHhccCCCeEEEEEEecCCCC
Confidence            999998 44444799999999885321              11111  11346777777777 999999999876544

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.49  E-value=2.3e-13  Score=115.73  Aligned_cols=168  Identities=12%  Similarity=0.158  Sum_probs=103.0

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--ee---cC----------ccccccEEEee----cCeEEEeec
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RL---LE----------PYQTKDIVVMQ----NGSLLFTRV  119 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~---~~----------~~~~~~~~~~~----~~~l~i~~~  119 (460)
                      +...|....+.+|++++|.|.+.. + ...+.|+|..  ..   +.          .....++....    +..|.|.++
T Consensus         6 v~q~p~~v~v~~G~~v~L~C~~~~-~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v   83 (252)
T 1oga_E            6 ITQSPKYLFRKEGQNVTLSCEQNL-N-HDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSA   83 (252)
T ss_dssp             EECSCSEEEEETTCCEEECCEECS-C-CSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred             ceEcCCeEEEcCCCcEEEEEEeCC-C-CCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcC
Confidence            445677788899999999999854 3 3479999842  11   10          00124555442    247999999


Q ss_pred             CCCCCeEEEEEEEcCCC---CcceeeEEEEEe----eCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCC-CeeEEE
Q psy535          120 NQNHQGRYTCTPYNAHG---TQGSSGQMEVLV----RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQK-PTITWQ  190 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~~g---~~~~~~~~~v~v----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~-~~~~W~  190 (460)
                      +.+|+|.|+|.+.+..+   .......+.|..    ..+|.+.+.+.....+..|+.++|.|.+   .+ .|. +.+.|+
T Consensus        84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~---~g~~P~~~~v~W~  160 (252)
T 1oga_E           84 QKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA---TGFYPDHVELSWW  160 (252)
T ss_dssp             CSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEE---EEEBSSCEEEEEE
T ss_pred             ChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEE---eeEcCCCcEEEEE
Confidence            99999999999988521   111122344432    1366665542222234568999999998   45 465 499999


Q ss_pred             cCCCccCCcccEEE----------ecc------eEEEccccce-eceEEEEEEecccce
Q psy535          191 RRDGVALPKNRVKI----------VGG------NITIEGLRRV-DFGYYECVVSNEVAT  232 (460)
Q Consensus       191 ~~~~~~~~~~~~~~----------~~~------~l~i~~~~~~-~~g~y~C~a~n~~g~  232 (460)
                      +++ ..+.......          .++      .|.|...... +.+.|+|.+.|....
T Consensus       161 ~~g-~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  218 (252)
T 1oga_E          161 VNG-KEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  218 (252)
T ss_dssp             ETT-EEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             ECC-EECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            944 3332221110          112      2555544443 467899999997554

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.49  E-value=6.6e-14  Score=108.99  Aligned_cols=104  Identities=19%  Similarity=0.198  Sum_probs=77.3

Q ss_pred             eEEEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe--ec--CeEEEeecCCCCC
Q psy535           49 AYLNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM--QN--GSLLFTRVNQNHQ  124 (460)
Q Consensus        49 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~~--~~l~i~~~~~~d~  124 (460)
                      ..+.+..+|.+...+....+.+|+++.|.|.+.+.|.+ .+.|+|++..+...  .++.+.  .+  ..|.|.++...|+
T Consensus        34 ~~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~  110 (154)
T 1fhg_A           34 AEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDP-EVMWFKDDNPVKES--RHFQIDYDEEGNCSLTISEVCGDDD  110 (154)
T ss_dssp             CCCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCS--SSEEEEECTTCEEEEEESSCCGGGC
T ss_pred             hcccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCC-EEEEEECCEECCCC--CcEEEEECCCCeEEEEECCCChhcC
Confidence            34445567888888888899999999999999998876 79999999988642  333333  22  3799999999999


Q ss_pred             eEEEEEEEcCCCCcceeeEEEEEeeCCCceeeC
Q psy535          125 GRYTCTPYNAHGTQGSSGQMEVLVRKPPAFTIK  157 (460)
Q Consensus       125 G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~~~~  157 (460)
                      |.|+|.|.|..|...  ..+.|.|..+|.....
T Consensus       111 G~Y~C~a~N~~G~~~--~~~~l~V~~~p~~~~~  141 (154)
T 1fhg_A          111 AKYTCKAVNSLGEAT--CTAELLVETMGKEGEG  141 (154)
T ss_dssp             EEEEEEEEETTEEEE--EEEEEEEECC------
T ss_pred             EEEEEEEEECCCeEE--EEEEEEEeCcCcCCCC
Confidence            999999999998854  4556666667655433

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.49  E-value=5e-13  Score=111.96  Aligned_cols=173  Identities=12%  Similarity=0.174  Sum_probs=104.3

Q ss_pred             ceeeeecceeeEEEEEEEecCC-CCCeEEEeeC--Cee---c------------CccccccEEEeecC-----eEEEeec
Q psy535           63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRL---L------------EPYQTKDIVVMQNG-----SLLFTRV  119 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~---~------------~~~~~~~~~~~~~~-----~l~i~~~  119 (460)
                      |....+.+|++++|.|.+.+.. ....+.|+|.  +..   +            ......|+....+.     +|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (230)
T 3n9g_H            7 SGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSL   86 (230)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence            3346688999999999997531 2246999973  111   1            01112455544433     3999999


Q ss_pred             CCCCCeEEEEEEEcCCC-----Cc-ceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeeeeccCCCC-CCeeE
Q psy535          120 NQNHQGRYTCTPYNAHG-----TQ-GSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ-KPTIT  188 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~~g-----~~-~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p-~~~~~  188 (460)
                      +.+|+|.|.|.+.+..+     .. .......|.|.    .+|.+...+... .+..|+.++|.|.+.  ...| .+.+.
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~--~~~P~~~~v~  163 (230)
T 3n9g_H           87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLVK--DYFPEPVTVS  163 (230)
T ss_dssp             CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCC-CCCTTCEEEEEEEEE--EEBSSCCEEE
T ss_pred             ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCc-cccCCCCEEEEEEEE--eEECCCEEEE
Confidence            99999999999987531     11 11122234442    345444322222 356899999999994  2234 45799


Q ss_pred             EEcCCCccCCcc----cE------EEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          189 WQRRDGVALPKN----RV------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       189 W~~~~~~~~~~~----~~------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      | . +.......    ..      ......|.|......| |.|+|.+.+..+.......+.+
T Consensus       164 W-~-~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v  223 (230)
T 3n9g_H          164 W-N-SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  223 (230)
T ss_dssp             E-G-GGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred             E-C-CcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccC
Confidence            9 3 32221100    00      0112368888888888 9999999998776555554444

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.49  E-value=1.7e-13  Score=115.44  Aligned_cols=173  Identities=13%  Similarity=0.206  Sum_probs=102.7

Q ss_pred             cceeeeecceeeEEEEEEEecCCC---CCeEEEeeC--Cee---c---C--------------ccccccEEEeecC----
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPT---FQYVTWTKD--KRL---L---E--------------PYQTKDIVVMQNG----  112 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~--~~~---~---~--------------~~~~~~~~~~~~~----  112 (460)
                      .|....+.+|++++|.|.+.+.+.   ...+.|++.  +..   +   .              .....|+....+.    
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   85 (239)
T 3tv3_H            6 ESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNL   85 (239)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTE
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCE
Confidence            344567889999999999987542   337999983  211   1   0              0112344443322    


Q ss_pred             -eEEEeecCCCCCeEEEEEEEcCCC-----------CcceeeEEEEEee----CCCceeeCCCcccccCCCCeEEEEeee
Q psy535          113 -SLLFTRVNQNHQGRYTCTPYNAHG-----------TQGSSGQMEVLVR----KPPAFTIKPEAMYQRKVGESVDMHCEA  176 (460)
Q Consensus       113 -~l~i~~~~~~d~G~y~C~~~~~~g-----------~~~~~~~~~v~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~  176 (460)
                       .|.|.+++.+|+|.|.|.+.+..+           .........|.|.    .+|.+...+... .+..|+.++|.|.+
T Consensus        86 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~  164 (239)
T 3tv3_H           86 VFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGCLV  164 (239)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCC-CC--TTEEEEEEEE
T ss_pred             EEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCCh-hhccCCcEEEEEEE
Confidence             499999999999999999976421           0011111233332    345444333332 35579999999999


Q ss_pred             eccCCCCCC-eeEEEcCCCccCCc---ccE------EEecceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535          177 QEAEGTQKP-TITWQRRDGVALPK---NRV------KIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       177 ~~~~~~p~~-~~~W~~~~~~~~~~---~~~------~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      .  ...|.+ .+.|.+++. ....   ...      ....+.|.|......+ |.|+|.+.|..+.......+
T Consensus       165 ~--~~~p~~~~v~W~~~g~-~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l  233 (239)
T 3tv3_H          165 K--DYFPEPVTVSWNSGAL-TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRV  233 (239)
T ss_dssp             E--EEBSSCCEEEEGGGTB-CTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred             e--eEeCCCeEEEEEECCc-cCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEe
Confidence            4  334544 588998543 2210   001      1112357777777777 99999999987665444433

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.48  E-value=5.7e-14  Score=118.39  Aligned_cols=129  Identities=15%  Similarity=0.184  Sum_probs=86.3

Q ss_pred             ccceEEEeeCC-----eEEEeecCCCCCeeEEEEEEeCCC------------CcceeeeEEEEe----cCCeeEEcceee
Q psy535            8 LETRVVIKKDG-----TLVINPVGSDDSGLYMCEVSNGIG------------EPQAAQAYLNVE----FPAKVTFTPTVQ   66 (460)
Q Consensus         8 ~~~r~~~~~~~-----~L~i~~~~~~d~G~Y~C~~~~~~~------------~~~~~~~~l~v~----~~p~~~~~~~~~   66 (460)
                      ..+|+.+..++     +|.|.+++.+|+|.|.|.+.+..+            ........|.|.    .+|.+...+...
T Consensus        71 ~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~  150 (239)
T 3tv3_H           71 LKSRLTLALDTPKNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSS  150 (239)
T ss_dssp             TGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCC
T ss_pred             ccCCEEEEEECCCCEEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCCh
Confidence            46899997653     699999999999999999987532            011233466664    244554344444


Q ss_pred             eecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeec------CeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           67 YLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQN------GSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      .+..|+.++|.|.+.+. |++..+.|++++..+........ ...+      +.|.|......| |.|+|.|.+..+..
T Consensus       151 ~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~  227 (239)
T 3tv3_H          151 KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  227 (239)
T ss_dssp             CC--TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE-ECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTE
T ss_pred             hhccCCcEEEEEEEeeEeCCCeEEEEEECCccCceEecCce-ECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCc
Confidence            45568999999999884 44446899999875432111111 1112      358888888888 99999999876554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	460
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	4e-14
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	5e-12
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	6e-14
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-12
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-04
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	8e-04
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	3e-12
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	3e-09
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	3e-12
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	4e-11
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	4e-12
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	2e-11
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	6e-12
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	1e-09
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	2e-11
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	1e-10
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	4e-11
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	5e-11
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	6e-11
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	2e-10
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	8e-11
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	1e-08
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	9e-11
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	3e-10
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	1e-10
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	3e-09
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	1e-10
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	4e-09
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	2e-10
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	5e-09
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	2e-10
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	4e-08
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	3e-10
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	2e-06
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	4e-10
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	5e-09
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	1e-09
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	2e-08
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	2e-09
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	7e-05
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	2e-09
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	5e-07
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	3e-09
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	4e-04
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	3e-09
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	7e-06
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	3e-09
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	4e-07
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	4e-09
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	2e-06
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	5e-09
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	6e-06
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	6e-09
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	2e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	7e-09
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	5e-04
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	8e-09
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-04
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	1e-08
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	4e-07
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	1e-08
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	1e-07
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-08
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	5e-06
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	5e-04
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-08
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	3e-08
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	3e-07
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	3e-08
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	3e-07
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-08
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	0.001
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	3e-08
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	9e-05
d1bqua1	95	b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-	4e-08
d1bqua1	95	b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-	9e-07
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	5e-08
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	5e-08
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	9e-06
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	7e-08
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	3e-05
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	8e-08
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	8e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-07
d2gysa4	100	b.1.2.1 (A:317-416) Common beta-chain in the GM-CS	1e-07
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	1e-07
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	1e-04
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-07
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-05
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-07
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-07
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-07
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-06
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	2e-07
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	1e-06
d2gysa2	114	b.1.2.1 (A:104-217) Common beta-chain in the GM-CS	4e-07
d2gysa2	114	b.1.2.1 (A:104-217) Common beta-chain in the GM-CS	4e-06
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	4e-07
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	7e-05
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	4e-07
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	2e-06
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	4e-07
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	5e-05
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	5e-07
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	0.001
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	9e-07
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	0.002
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	9e-07
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	9e-07
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	3e-05
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	1e-06
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	3e-05
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	2e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-06
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	2e-06
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	2e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-06
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-05
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	3e-06
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	4e-06
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	3e-06
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	4e-04
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	5e-06
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	3e-04
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	5e-06
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	9e-05
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	5e-06
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	0.002
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	7e-06
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	2e-05
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	7e-06
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	8e-05
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	7e-06
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	1e-04
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	8e-06
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	8e-04
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	0.004
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	9e-06
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	9e-05
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	1e-05
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	4e-05
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	1e-05
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	5e-04
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-05
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-04
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	1e-05
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	5e-04
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	1e-05
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	2e-04
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	2e-05
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	3e-04
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	2e-05
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	3e-05
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	0.002
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	3e-05
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	2e-04
d1erna2	105	b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor	4e-05
d1erna2	105	b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor	7e-05
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	4e-05
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	6e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	5e-05
d3d85d3	94	b.1.2.1 (D:212-305) The p40 domain of interleukin-	5e-05
d2haza1	101	b.1.2.1 (A:489-589) Neural cell adhesion molecule	5e-05
d2haza1	101	b.1.2.1 (A:489-589) Neural cell adhesion molecule	4e-04
d2cspa1	117	b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Ho	5e-05
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	6e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	7e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	0.001
d1axib2	106	b.1.2.1 (B:131-236) Growth hormone receptor {Human	1e-04
d1axib2	106	b.1.2.1 (B:131-236) Growth hormone receptor {Human	1e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	1e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	0.002
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	1e-04
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	0.004
d1cd9b2	106	b.1.2.1 (B:108-213) Granulocyte colony-stimulating	1e-04
d2cuha1	102	b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens)	1e-04
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-04
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	2e-04
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	0.003
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	2e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.004
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	2e-04
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	4e-04
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	2e-04
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	3e-04
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-04
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	3e-04
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	7e-04
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	4e-04
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	6e-04
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	4e-04
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	8e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.001
d2b5ic1	95	b.1.2.1 (C:130-224) Cytokine receptor common gamma	0.001
d2b5ic1	95	b.1.2.1 (C:130-224) Cytokine receptor common gamma	0.001
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	0.001
d3d48r2	104	b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom	0.001
d3d48r2	104	b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom	0.002
d1v5ja_	108	b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId	0.001
d1y6kr1	99	b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10	0.001
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	0.002
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	0.002
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	0.003
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	0.003
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.003
d1f6fb1	96	b.1.2.1 (B:5-100) Prolactin receptor {Rat (Rattus	0.003
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	0.004
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	0.004

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 4e-14
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 26/138 (18%)

Query: 325 LGDGMLSN-IVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTD 382
           +GDG  S+  ++ +T    PGPP  +   EV      + WQPP     +I  Y I +R +
Sbjct: 2   IGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLN 61

Query: 383 GSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG 442
                                       +   + V  P + Q T   L P + Y F++  
Sbjct: 62  ------------------------TTTANTATVEVLAPSARQYTATGLKPESVYLFRITA 97

Query: 443 KNELGDGMLSNIVVVKTK 460
           +   G G  +  +VV T+
Sbjct: 98  QTRKGWGEAAEALVVTTE 115

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 5e-12
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 1/95 (1%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P  P  I        SV L W P  +    +    +         +   + V  P + Q 
Sbjct: 21  PGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQY 80

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339
           T   L P + Y F++  +   G G  +  +VV T+
Sbjct: 81  TATGLKPESVYLFRITAQTRKGWGEAAEALVVTTE 115

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 6e-14
 Identities = 26/221 (11%), Positives = 58/221 (26%), Gaps = 30/221 (13%)

Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           T P  P +   V+ +   + L+W P      ++  +Y++++  Q     L          
Sbjct: 1   TNPSVPLDPISVSNSSSQIILKWKPPSDPNGNI-THYLVFWERQAEDSELFEL------D 53

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISW 362
                   P+ T+      ++                   P     +      + F  ++
Sbjct: 54  YCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTF 113

Query: 363 QPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS 422
           +  L                              +   LG+    GN +           
Sbjct: 114 EDYL---------------HNVVFVPRP----SRKRRSLGDVGNAGNNEEHRPFEKVVNK 154

Query: 423 TQITINRLTPATTYEFQVVGKNELGDGM---LSNIVVVKTK 460
             + I+ L   T Y  ++   N+        ++  V  +T 
Sbjct: 155 ESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTM 195

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 60.9 bits (147), Expect = 2e-12
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNIT 210
            P +  KPE +   K G+ V + C+     G   P + W   +   L   R  +    + 
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKV---TGLPAPNVVW-SHNAKPLSGGRATVTDSGLV 57

Query: 211 IEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
           I+G++  D GYY C  +NE         + V
Sbjct: 58  IKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
            + C +   P    V W+ + + L   +      + +  L+   V    +G Y C   N 
Sbjct: 22  TIPCKVTGLPAPN-VVWSHNAKPLSGGR----ATVTDSGLVIKGVKNGDKGYYGCRATNE 76

Query: 135 HGTQGSSGQMEV 146
           HG +     ++V
Sbjct: 77  HGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 36.3 bits (83), Expect = 8e-04
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 17 DGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
          D  LVI  V + D G Y C  +N  G+    +  + V
Sbjct: 53 DSGLVIKGVKNGDKGYYGCRATNEHGDKY-FETLVQV 88

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 3e-12
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 3/106 (2%)

Query: 235 QAAQLVVEGT--QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWL 292
           ++A L V      P  P          ++ L W   + G   L   Y++   E      +
Sbjct: 1   RSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPL-IRYILEMSENNAPWTV 59

Query: 293 PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
            +    P +T +T+  L PA +Y+F++   N++G G  S      +
Sbjct: 60  LLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVS 105

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 3e-09
 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 25/129 (19%)

Query: 331 SNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNK 390
           S  + V+     P  P     T       ++W  P +  S +  Y+++   + +      
Sbjct: 2   SAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAP----- 56

Query: 391 GQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM 450
                                 + +    P +T +T+  L PA +Y+F++   N++G G 
Sbjct: 57  --------------------WTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQ 96

Query: 451 LSNIVVVKT 459
            S      +
Sbjct: 97  FSKDTERVS 105

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 3e-12
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 27/126 (21%)

Query: 335 VVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQI 393
           +  T   +P  P    +     N   + W+ P +  S IQ +++++              
Sbjct: 3   IFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGN-------- 54

Query: 394 RPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
                                         Q  I +L+PA   +F++  +N+ G    S 
Sbjct: 55  ------------------GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSE 96

Query: 454 IVVVKT 459
            V+  T
Sbjct: 97  EVLYYT 102

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 4e-11
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 243 GTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
             +P  P        T+ S+TL+W      G  +     +   ++G  +           
Sbjct: 8   SCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKI--QNFVLEWDEGKGNGEFCQCYMGSQ 65

Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG 340
            Q  I +L+PA   +F++  +N+ G    S  V+  T G
Sbjct: 66  KQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSG 104

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 4e-12
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 243 GTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
           G  P AP ++     +   + L W    S        Y ++Y ++G         + PG 
Sbjct: 8   GPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGE 67

Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339
            Q+TI  L PAT Y F+V+ +N+ G G  S  + V+T+
Sbjct: 68  MQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQ 105

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 2e-11
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 27/125 (21%)

Query: 338 TKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERA-SLIQYYLIKYRTDGSWKTLNKGQIRP 395
           T GP P  PR+V  + V+  F+ ++W+ P          Y +                  
Sbjct: 6   TTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSV------------------ 47

Query: 396 EENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV 455
                   Y ++G         + PG  Q+TI  L PAT Y F+V+ +N+ G G  S  +
Sbjct: 48  -------FYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPL 100

Query: 456 VVKTK 460
            V+T+
Sbjct: 101 RVETQ 105

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 6e-12
 Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 26/127 (20%)

Query: 334 VVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQ 392
            +V+T    PGP  ++S +E+      +SWQ P E+  ++  Y I               
Sbjct: 2   QLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRI--------------- 46

Query: 393 IRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS 452
                      + E    +       P  + +  +  LT  TTY  +V      G G +S
Sbjct: 47  ----------SWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVS 96

Query: 453 NIVVVKT 459
              +   
Sbjct: 97  ASTISSG 103

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P    +++     + S+ + W         L   Y I + E    +       P  + + 
Sbjct: 11  PGPVGHLSFSEILDTSLKVSWQEPGEKNGIL-TGYRISWEEYNRTNTRVTHYLPNVTLEY 69

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGP 341
            +  LT  TTY  +V      G G +S   +     P
Sbjct: 70  RVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVPP 106

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 2e-11
 Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 29/128 (22%)

Query: 334 VVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQ 392
           V  + +   PGP  N+     +     ++W+ P+     IQ Y + Y   G+ K  +   
Sbjct: 2   VETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQD--- 58

Query: 393 IRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS 452
                                        S   TIN L   T Y F+VV  N+ G G+ +
Sbjct: 59  -------------------------VDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVST 93

Query: 453 NIVVVKTK 460
             V V+T 
Sbjct: 94  PDVAVRTL 101

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 1e-10
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 242 EGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPG 300
           E   P    N+   A +  S+T+ W    SG  ++ QNY ++Y E+G      + V+   
Sbjct: 7   EVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEI-QNYKLYYMEKGTDKEQDVDVSS-- 63

Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339
               TIN L   T Y F+VV  N+ G G+ +  V V+T 
Sbjct: 64  -HSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTL 101

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 4e-11
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 238 QLVVEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV 296
           Q++ +   P  P N      +E S+ L W P  S       NY + Y++  + +   I +
Sbjct: 3   QVITQTGVPGQPLNFKAEPESETSILLSWTPPRSDTI---ANYELVYKDGEHGEEQRITI 59

Query: 297 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339
            P   T   +  L P + Y F++  ++  G G  +  +  +T 
Sbjct: 60  EP--GTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTM 100

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (137), Expect = 5e-11
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 30/128 (23%)

Query: 334 VVVKTKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQ 392
           + V T+   PG P N      +   + +SW PP  R+  I  Y + Y+     +      
Sbjct: 2   IQVITQTGVPGQPLNFKAEPESETSILLSWTPP--RSDTIANYELVYKDGEHGEEQR--- 56

Query: 393 IRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS 452
                                   +T    T   +  L P + Y F++  ++  G G  +
Sbjct: 57  ------------------------ITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGAST 92

Query: 453 NIVVVKTK 460
             +  +T 
Sbjct: 93  AEISARTM 100

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 6e-11
 Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 27/119 (22%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           P     +         V + WQ P +   +I  Y IKY                      
Sbjct: 4   PSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYY--------------------- 42

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
                + +K+          +T+ T++ L P T Y FQV  +   G G  S  + V+T 
Sbjct: 43  -----EKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETG 96

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 246 PHAPYNITGVA-TEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
           P     I      + SV+L W  P    G  L   Y I Y E+  +           +T+
Sbjct: 4   PSQVVVIRQERAGQTSVSLLWQEPEQPNGIIL--EYEIKYYEKDKEMQ-SYSTLKAVTTR 60

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGP 341
            T++ L P T Y FQV  +   G G  S  + V+T  P
Sbjct: 61  ATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKP 98

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 8e-11
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 2/109 (1%)

Query: 241 VEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLK-QNYVIWYREQGNKDWLPIPVTP 298
           +      AP N++       S+ + W P      + +   Y I YR+   K  +   +  
Sbjct: 7   LSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVS 66

Query: 299 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPR 347
                  I  L   T Y F+V      G G  ++ +  +T        R
Sbjct: 67  GTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETR 115

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 29/128 (22%), Positives = 42/128 (32%), Gaps = 25/128 (19%)

Query: 334 VVVKTKGPKP-GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKG 391
           V V+T    P   P+N+S+   N    +I WQPP                         G
Sbjct: 2   VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQ-------------------NG 42

Query: 392 QIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGML 451
           QI      Y   YR+   K  +   +         I  L   T Y F+V      G G  
Sbjct: 43  QIT----GYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPA 98

Query: 452 SNIVVVKT 459
           ++ +  +T
Sbjct: 99  TDWLSAET 106

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 9e-11
 Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 2/93 (2%)

Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQIT 305
           P  P  +       +  L+W P      +L   Y + Y          I          T
Sbjct: 1   PGRPTMMISTTAMNTALLQWHPPKELPGEL-LGYRLQYCRADEARPNTIDFGKD-DQHFT 58

Query: 306 INRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
           +  L   TTY F++  KN  G G      +   
Sbjct: 59  VTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTP 91

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 3e-10
 Identities = 21/117 (17%), Positives = 31/117 (26%), Gaps = 26/117 (22%)

Query: 343 PGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402
           PG P  +  T   N  ++ W PP E    +  Y ++Y                       
Sbjct: 1   PGRPTMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEA----------------- 43

Query: 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                                  T+  L   TTY F++  KN  G G      +   
Sbjct: 44  ---------RPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTP 91

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 22/114 (19%), Positives = 30/114 (26%), Gaps = 9/114 (7%)

Query: 242 EGTQPHAPYNITGVA-TEFSVTLEWLPG-YSGGPDLKQNYVIWYREQGNKDWLP------ 293
           E     AP N+           + W P          Q Y I+Y +  +           
Sbjct: 11  EDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEK 70

Query: 294 -IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
            I       T   +  L P + Y   V   N  G+G  S   V  T        
Sbjct: 71  KILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGPSS 124

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 3e-09
 Identities = 25/121 (20%), Positives = 31/121 (25%), Gaps = 21/121 (17%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLE--RASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
              P NV V  VN     + W P         +Q Y I Y    S               
Sbjct: 15  MVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS------------- 61

Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                +         I       T   +  L P + Y   V   N  G+G  S   V  T
Sbjct: 62  -----KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNT 116

Query: 460 K 460
            
Sbjct: 117 P 117

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.9 bits (136), Expect = 1e-10
 Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 10/118 (8%)

Query: 343 PGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402
           PG P  V +++  +G  +SW+PP   +  I  Y        +    N  Q+         
Sbjct: 8   PGAPSTVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGL 67

Query: 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
           +                 G         T      F++  KNE G G  + I  ++  
Sbjct: 68  KTSCT----------VTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGN 115

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.3 bits (124), Expect = 4e-09
 Identities = 20/117 (17%), Positives = 30/117 (25%), Gaps = 19/117 (16%)

Query: 246 PHAPYNITGVATEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIP--------- 295
           P AP  +        + L W  P    G      Y  +   +  +               
Sbjct: 8   PGAPSTVRISKNVDGIHLSWEPPTSPSGN--ILEYSAYLAIRTAQMQDNPSQLVFMRIYC 65

Query: 296 ------VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
                     G         T      F++  KNE G G  + I  ++    K GP 
Sbjct: 66  GLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGN-SKSGPS 121

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 241 VEGTQPHAPYNITGVA---TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT 297
            E      P ++T V+      ++ + W P       +    + +  +   +    +   
Sbjct: 7   FELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEP 66

Query: 298 PPGS-TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
             G+     I  LT  T Y F++  +N  G G +S  V  +T
Sbjct: 67  VVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 108

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 5e-09
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 26/120 (21%)

Query: 343 PGPPRNVSVTEVNNG---FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
             PP++V+V          +++WQPP E    I  Y+I Y TD +               
Sbjct: 12  TSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNA-------------- 57

Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                      DW+  PV         I  LT  T Y F++  +N  G G +S  V  +T
Sbjct: 58  --------EIHDWVIEPVVGN-RLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 108

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.9 bits (134), Expect = 2e-10
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 3/100 (3%)

Query: 244 TQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP-VTPPGS 301
           + P AP   T   A+E SV + W+P  +GG  ++   V + + +   DW+      PP  
Sbjct: 9   SPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSR 68

Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVV-VKTKG 340
             + I  L    +Y+F+V   N LG+   S         G
Sbjct: 69  LSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 108

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.0 bits (116), Expect = 4e-08
 Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 24/116 (20%)

Query: 338 TKGPKPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPE 396
            +   P  P   +++  +   V ++W P       IQ + ++Y+                
Sbjct: 6   GRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKK------------ 53

Query: 397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS 452
                           L     PP    + I  L    +Y+F+V   N LG+   S
Sbjct: 54  -----------VGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPS 98

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 3e-10
 Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 7/108 (6%)

Query: 257 TEFSVTLEWLPGYSGGPDLKQNYVIWYRE-------QGNKDWLPIPVTPPGSTQITINRL 309
              +V L W P  S          +              KD     V     T IT+N L
Sbjct: 30  QARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDL 89

Query: 310 TPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNG 357
            PA  Y  +V  +     G  S   +  T   +P  P    ++  ++G
Sbjct: 90  KPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPRISGPSSG 137

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 21/132 (15%), Positives = 31/132 (23%), Gaps = 20/132 (15%)

Query: 331 SNIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLE-RASLIQYYLIKYRTDGSWKTL 388
           S     K              +++     V++W PP            +           
Sbjct: 6   SGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELY------- 58

Query: 389 NKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD 448
                      Y       G        V     T IT+N L PA  Y  +V  +     
Sbjct: 59  ----------GYEVLISSTGKDGKY-KSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIK 107

Query: 449 GMLSNIVVVKTK 460
           G  S   +  T 
Sbjct: 108 GTPSEAEIFTTL 119

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 4e-10
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 25/128 (19%)

Query: 336 VKTK-GPKPGPPRNVSVTEVN-NGFVISWQPPLE--RASLIQYYLIKYRTDGSWKTLNKG 391
           + T+     GPP +V++  V      ++W+ P +  +  +I+ Y I YR +         
Sbjct: 1   ISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYREN--------- 51

Query: 392 QIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGML 451
                             +  +        S   T++ L     Y   V   N  G G  
Sbjct: 52  ------------SPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPS 99

Query: 452 SNIVVVKT 459
           S+ +   T
Sbjct: 100 SSEINATT 107

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 5e-09
 Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 6/103 (5%)

Query: 242 EGTQPHAPYNITGVA-TEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLP----IP 295
           E      P ++T    T  S+ + W  P       + + Y I YRE              
Sbjct: 5   EAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEM 64

Query: 296 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
                S   T++ L     Y   V   N  G G  S+ +   T
Sbjct: 65  KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATT 107

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P  P        T+ SVTL W PG  G        +  + +  +  W  +      +T  
Sbjct: 16  PGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVA-NHVKTTLY 74

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTKGPKP 343
           T+  L P T Y F V   N  G    S +   V+T+   P
Sbjct: 75  TVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP 114

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 2e-08
 Identities = 29/121 (23%), Positives = 38/121 (31%), Gaps = 27/121 (22%)

Query: 342 KPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
            PGPP    VT+V    V +SWQP          Y+I                       
Sbjct: 15  LPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYII----------------------- 51

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKT 459
             E   Q   +          +T  T+  L P T Y F V   N  G    S +   V+T
Sbjct: 52  --EAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRT 109

Query: 460 K 460
           +
Sbjct: 110 Q 110

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 2e-09
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQIT 305
           P  P  + G      + L W P    G      Y +        +     V      + T
Sbjct: 4   PCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEP--REVYQGSEVECT 61

Query: 306 INRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
           ++ L P  TY F++   N++G G  S    + T
Sbjct: 62  VSSLLPGKTYSFRLRAANKMGFGPFSEKCDITT 94

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 7e-05
 Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 30/120 (25%)

Query: 343 PGPPRNVSVTEV--NNGFVISWQPPLE-RASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
           PGP     +          + W PPL    S I  Y ++       +             
Sbjct: 2   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDE------------- 48

Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                         P  V      + T++ L P  TY F++   N++G G  S    + T
Sbjct: 49  --------------PREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITT 94

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 246 PHAPYN--ITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
           P  P    + G     S  + W P    G      YV+   E  N +   +  +   + +
Sbjct: 11  PGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGA-TRE 69

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
              +RL P   Y  +V   ++ G   +S  ++V+T
Sbjct: 70  HLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT 104

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 5e-07
 Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 27/129 (20%)

Query: 333 IVVVKTKGPKPGPPRNVSVTEV--NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNK 390
           +V   T   KPG P   SV     ++ F I+W PP +         +    +GS      
Sbjct: 1   VVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSN----- 55

Query: 391 GQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM 450
                                     +    + +   +RL P   Y  +V   ++ G   
Sbjct: 56  --------------------GNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSA 95

Query: 451 LSNIVVVKT 459
           +S  ++V+T
Sbjct: 96  VSESLLVQT 104

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (123), Expect = 3e-09
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
             +  ++  V      + L W       P    +Y +    Q  +    +        ++
Sbjct: 3   SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEP-----RV 57

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGP 341
            + +L P TTY  +V     LG G  S     +T  P
Sbjct: 58  LLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPP 94

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 34/121 (28%)

Query: 342 KPGPPRNVSVTEVNNGFV-ISWQP--PLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN 398
           +     ++ + +     + ++W    P      + Y L     D  W  +          
Sbjct: 2   ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEP------ 55

Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK 458
                                    ++ + +L P TTY  +V     LG G  S     +
Sbjct: 56  -------------------------RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFR 90

Query: 459 T 459
           T
Sbjct: 91  T 91

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 3e-09
 Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 3/95 (3%)

Query: 255 VATEFSVTLEWLPGYSGGP--DLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPA 312
           V T  +V + W            +  Y      Q    W  +    P      +  L   
Sbjct: 26  VLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKG 85

Query: 313 TTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPR 347
            TYE +V        GM S    V+T   + GP  
Sbjct: 86  VTYEIKVRPYFNEFQGMDSESKTVRTT-EESGPSS 119

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 7e-06
 Identities = 20/116 (17%), Positives = 30/116 (25%), Gaps = 23/116 (19%)

Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
             R  +   +      ++W     +   IQ Y + YR                       
Sbjct: 18  LVRLHNPVVLTPTTVQVTWTVD-RQPQFIQGYRVMYRQ---------------------T 55

Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
              Q    W  +    P      +  L    TYE +V        GM S    V+T
Sbjct: 56  SGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRT 111

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 3e-09
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 13/99 (13%)

Query: 152 PAFTIKPEAMYQR----KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-- 205
           P +T   E M +R        +V   C A    G   PT+ W +       ++R+     
Sbjct: 2   PYWT-NTEKMEKRLHAVPAANTVKFRCPA---GGNPMPTMRWLKNGKEFKQEHRIGGYKV 57

Query: 206 ---GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
                ++ +E +   D G Y CVV NE  +I     L V
Sbjct: 58  RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 4e-07
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 77  QCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYNA 134
           +C    NP    + W K+ +  +         ++N   SL+   V  + +G YTC   N 
Sbjct: 26  RCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 84

Query: 135 HGTQGSSGQMEVL 147
           +G+   +  ++V+
Sbjct: 85  YGSINHTYHLDVV 97

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 4e-09
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 246 PHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P  P +     A    ++L+W        D   +Y++    +    +   P         
Sbjct: 1   PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEME-EETSGYGFKPKYDGEDLAY 59

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
           T+  L  +T Y+F+V+  N  G    S +V   T
Sbjct: 60  TVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT 93

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 26/118 (22%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           P  P +  +T+    ++ + W  P    S      I    + +                 
Sbjct: 1   PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETS---------------- 44

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                     +   P         T+  L  +T Y+F+V+  N  G    S +V   T
Sbjct: 45  ---------GYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT 93

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 5e-09
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P     +  V+ T  S+TL W         +    + +Y ++   +     +    +   
Sbjct: 1   PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKE--HNEFNSSMARSQTNTA 58

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
            I+ L P   Y  QV  +   G G  S  +  +T
Sbjct: 59  RIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT 92

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 6e-06
 Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 27/118 (22%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           P     +         + +SW  P +   +I  Y I+Y                      
Sbjct: 1   PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEK------------------- 41

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                    +     +    +    I+ L P   Y  QV  +   G G  S  +  +T
Sbjct: 42  -------EHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT 92

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 6e-09
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 3/110 (2%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P+ P+++      + SV L W PG      + +  + +                 G+   
Sbjct: 17  PNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT 76

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTKGPKP-GPPRNVSVT 352
               L+P   Y F+V+  N +G  + S       TK  +P   P +   +
Sbjct: 77  AQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGPSS 126

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 25/119 (21%)

Query: 342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
            P PP ++ +T+       +SW P  +  S I  ++I+Y                     
Sbjct: 16  VPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKP-------------- 61

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                               G+       L+P   Y F+V+  N +G  + S       
Sbjct: 62  ----------GLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYL 110

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.6 bits (120), Expect = 7e-09
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITI 211
           P +        +  +G  +   C A    G  +P + W R       +NR+++ GG +  
Sbjct: 2   PDWLDVITDT-EADIGSDLRWSCVA---SGKPRPAVRWLRDGQPLASQNRIEVSGGELRF 57

Query: 212 EGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
             L   D G Y+CV  N+  T+  +A+L V+
Sbjct: 58  SKLVLEDSGMYQCVAENKHGTVYASAELTVQ 88

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.8 bits (84), Expect = 5e-04
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
              C     P          +    P  +++ + +  G L F+++     G Y C   N 
Sbjct: 20  RWSCVASGKPRPAVRWLRDGQ----PLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENK 75

Query: 135 HGTQGSSGQMEV 146
           HGT  +S ++ V
Sbjct: 76  HGTVYASAELTV 87

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.6 bits (120), Expect = 8e-09
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNIT 210
            P+   K  A      G+ V + C A    G   P I W  R       ++       + 
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFA---FGNPVPQIKW--RKLDGSQTSKWLSSEPLLH 58

Query: 211 IEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           I+ +   D G YEC   N         ++++ 
Sbjct: 59  IQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 6/72 (8%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
            ++C    NP  Q                    +     L    V+   +G Y C   N 
Sbjct: 24  TLECFAFGNPVPQIKWRK------LDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENI 77

Query: 135 HGTQGSSGQMEV 146
            G     G++ +
Sbjct: 78  KGRDTYQGRIII 89

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 1e-08
 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
           +P  I     T  S T+ W+            Y I +  +           P     IT+
Sbjct: 3   SPTGIDFSDITANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVPHSRNSITL 58

Query: 307 NRLTPATTYEFQVVGKNELGDG 328
             LTP T Y   +V  N   + 
Sbjct: 59  TNLTPGTEYVVSIVALNGREES 80

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 4e-07
 Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 29/106 (27%)

Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
            P  +  +++  N F + W  P    + I  Y I                          
Sbjct: 3   SPTGIDFSDITANSFTVHWIAP---RATITGYRI-------------------------R 34

Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
           +  +           P     IT+  LTP T Y   +V  N   + 
Sbjct: 35  HHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREES 80

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.3 bits (119), Expect = 1e-08
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
             AP ++T    T+ + TL+W P    G      Y++ Y  +G+++W+P    P      
Sbjct: 2   TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 61

Query: 305 TINRLTPATTYEFQVVGKNELGDG---MLSNIVVVK 337
           T+  L       F+VVG N  G      L   V ++
Sbjct: 62  TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR 97

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (111), Expect = 1e-07
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 30/121 (24%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLE-RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
              P++++V +V +    + W+PP    A  I  YL+                       
Sbjct: 2   TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLV----------------------- 38

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG---MLSNIVVV 457
             EY  +G+++W+P    P      T+  L       F+VVG N  G      L   V +
Sbjct: 39  --EYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTI 96

Query: 458 K 458
           +
Sbjct: 97  R 97

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 9/102 (8%)

Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GG 207
           P     PE   + + GESV++  +     GTQ  T TW +          +K+     G 
Sbjct: 1   PQIIQFPEDQ-KVRAGESVELFGKV---TGTQPITCTWMKFRKQIQESEHMKVENSENGS 56

Query: 208 NITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
            +TI   R+   G Y  +V N++ +      L V    P  P
Sbjct: 57  KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK-PDPP 97

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 5e-06
 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 1/82 (1%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
            +   +              K++ E    K         L      Q H G YT    N 
Sbjct: 19  ELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK 78

Query: 135 HGTQGSSGQMEVLVR-KPPAFT 155
            G++ +   + V+ +  PPA T
Sbjct: 79  LGSRQAQVNLTVVDKPDPPAGT 100

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 5e-04
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 19  TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV-EFPAKVTFTP 63
            L I     +  G Y   V N +G  Q AQ  L V + P     TP
Sbjct: 57  KLTILAARQEHCGCYTLLVENKLGSRQ-AQVNLTVVDKPDPPAGTP 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----- 205
            P FT     M +   G +    C+    EG   P + W + D         +I      
Sbjct: 8   KPYFTKTILDM-EVVEGSAARFDCKV---EGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 63

Query: 206 GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
             ++TI  +   D   Y C   N +      A+L+VE
Sbjct: 64  NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 100

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 3e-08
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYS---GGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
              PY     A  E ++ L+W+   +     P           +  N       +     
Sbjct: 2   VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 61

Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339
              +I+ L P T+Y+ ++   NE G+   SN+++ +TK
Sbjct: 62  YWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETK 99

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 3e-07
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 22/119 (18%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
              P       VN   + + W                        + N   I      Y 
Sbjct: 2   VAGPYITFTDAVNETTIMLKWMYI-------------------PASNNNTPIHGFYIYY- 41

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
               +  N       +        +I+ L P T+Y+ ++   NE G+   SN+++ +TK
Sbjct: 42  -RPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETK 99

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 49.2 bits (116), Expect = 3e-08
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 1/95 (1%)

Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQIT 305
           P+AP             + W         +    + +        W       P +    
Sbjct: 6   PNAPKLTGITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSF 65

Query: 306 INRLTPATTYEFQVVGKNELGDGMLSNI-VVVKTK 339
           + +++P   Y F+V+  N++G    S       T+
Sbjct: 66  VVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ 100

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 25/120 (20%)

Query: 342 KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
            P  P+   +T   +   I W+   +  S I +Y I++ T  +                 
Sbjct: 5   VPNAPKLTGITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTP---------------- 48

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI-VVVKTK 460
                     W       P +    + +++P   Y F+V+  N++G    S       T+
Sbjct: 49  --------ASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ 100

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 3e-08
 Identities = 12/99 (12%), Positives = 23/99 (23%), Gaps = 9/99 (9%)

Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV---- 205
           + P    + ++      G             G   P   W +        +R+       
Sbjct: 3   EAPKIFERIQSQ-TVGQGSDAHFRVRV---VGKPDPECEWYKNGVKIERSDRIYWYWPED 58

Query: 206 -GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
               + I  +   D         N        A L+V+ 
Sbjct: 59  NVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 8/73 (10%), Positives = 16/73 (21%), Gaps = 1/73 (1%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL-FTRVNQNHQGRYTCTPYN 133
             +  +   P  +   +    ++    +        N   L    V             N
Sbjct: 23  HFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN 82

Query: 134 AHGTQGSSGQMEV 146
             G   S   + V
Sbjct: 83  IAGETSSHAFLLV 95

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 3e-08
 Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 9/123 (7%)

Query: 345 PPRNVSVTEVN-NGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402
                S    + +  ++ W+P        +  +++ Y+                 ++   
Sbjct: 4   ELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWT 63

Query: 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD-----GMLSNIVVV 457
                                   +  L P T Y   V       D     G  S+I+ V
Sbjct: 64  VVDIDPPLRS--NDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYV 121

Query: 458 KTK 460
           +T 
Sbjct: 122 QTD 124

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 9e-05
 Identities = 16/121 (13%), Positives = 32/121 (26%), Gaps = 29/121 (23%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW--------------- 291
                + +  +   + L W P +         ++++Y+E   ++                
Sbjct: 4   ELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWT 63

Query: 292 --------LPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD-----GMLSNIVVVKT 338
                                 +  L P T Y   V       D     G  S+I+ V+T
Sbjct: 64  VVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQT 123

Query: 339 K 339
            
Sbjct: 124 D 124

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 4e-08
 Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 3/87 (3%)

Query: 243 GTQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
           G  P  P N++ +      +  EW  G       + N+ +      +K           +
Sbjct: 1   GLPPEKPKNLSCIVNEGKKMRCEWDGGRETHL--ETNFTLKSEWATHKFADCKAKRDTPT 58

Query: 302 TQITINRLTPATTYEFQVVGKNELGDG 328
           +             E  V  +N LG  
Sbjct: 59  SCTVDYSTVYFVNIEVWVEAENALGKV 85

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 9e-07
 Identities = 12/110 (10%), Positives = 20/110 (18%), Gaps = 25/110 (22%)

Query: 340 GPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
           G  P  P+N+S        +           L   + +K                     
Sbjct: 1   GLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKF------------- 47

Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
                                 ++             E  V  +N LG  
Sbjct: 48  ------------ADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKV 85

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (114), Expect = 5e-08
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNIT 210
           P   T++ +     + G  V   C A+    +   T+ W R        +R     G +T
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKS--KSPAYTLVWTR-LHNGKLPSRAMDFNGILT 57

Query: 211 IEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
           I  ++  D G Y C  SN  A     A L V+
Sbjct: 58  IRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 5e-08
 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 4/82 (4%)

Query: 257 TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE 316
           T  S+ + W           + Y I Y E G    +     P   +  TI+ L P   Y 
Sbjct: 9   TPTSLLISWDAPAVTV----RYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYT 64

Query: 317 FQVVGKNELGDGMLSNIVVVKT 338
             V      GD   S+  +   
Sbjct: 65  ITVYAVTGRGDSPASSKPISIN 86

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 9e-06
 Identities = 20/114 (17%), Positives = 28/114 (24%), Gaps = 29/114 (25%)

Query: 347 RNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYR 405
           R++ V        +ISW  P                                  Y   Y 
Sbjct: 1   RDLEVVAATPTSLLISWDAPAVTVR----------------------------YYRITYG 32

Query: 406 EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
           E G    +     P   +  TI+ L P   Y   V      GD   S+  +   
Sbjct: 33  ETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISIN 86

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 7e-08
 Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 6/93 (6%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
           AP N    A     +   WLP                            +       + +
Sbjct: 4   APQNPNAKAAGSRKIHFNWLPPSGKP-----MGYRVKYWIQGDSESEAHLLDSKVPSVEL 58

Query: 307 NRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339
             L P   YE +V      G+G  S++V  +T 
Sbjct: 59  TNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTH 91

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-05
 Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 30/118 (25%)

Query: 344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402
           G P+N +           +W PP      + Y +  +    S    +             
Sbjct: 3   GAPQNPNAKAAGSRKIHFNWLPP--SGKPMGYRVKYWIQGDSESEAH------------- 47

Query: 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
                         +       + +  L P   YE +V      G+G  S++V  +T 
Sbjct: 48  --------------LLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTH 91

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 8e-08
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
           AP N+  +A T  S+ + W P  +        Y+I Y + G+     +P   PG T+ TI
Sbjct: 3   APSNLRFLATTPNSLLVSWQPPRARI----TGYIIKYEKPGSPPREVVPRPRPGVTEATI 58

Query: 307 NRLTPATTYEFQVVGKNELGDG 328
             L P T Y   V+        
Sbjct: 59  TGLEPGTEYTIYVIALKNNQKS 80

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 8e-06
 Identities = 23/106 (21%), Positives = 33/106 (31%), Gaps = 29/106 (27%)

Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
            P N+       N  ++SWQPP                            R     Y+ +
Sbjct: 3   APSNLRFLATTPNSLLVSWQPP----------------------------RARITGYIIK 34

Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
           Y + G+     +P   PG T+ TI  L P T Y   V+        
Sbjct: 35  YEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKS 80

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 1e-07
 Identities = 20/99 (20%), Positives = 29/99 (29%), Gaps = 13/99 (13%)

Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN 208
           +K  AF  K E  YQ   G  + +  E           + W +            I    
Sbjct: 3   KKSTAFQKKLEPAYQVSKGHKIRLTVEL----ADHDAEVKWLKNGQEIQMSGSKYIFESI 58

Query: 209 ITIEGLRRV-----DFGYYECVVSNEVATIVQAAQLVVE 242
                L        D   Y+CVV  E  +     +L V+
Sbjct: 59  GAKRTLTISQCSLADDAAYQCVVGGEKCS----TELFVK 93

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 14/81 (17%), Positives = 26/81 (32%)

Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITIN 307
           AP ++       S +L W         +   + I YR+           T   +  + + 
Sbjct: 7   APPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALP 66

Query: 308 RLTPATTYEFQVVGKNELGDG 328
            L P+T Y  +V  +      
Sbjct: 67  ALEPSTRYWARVRVRTSRTGY 87

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 7/100 (7%)

Query: 243 GTQPHAPYNITGVA--TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLP-----IP 295
           G  P +P N++ +   T  S+  +W PG             +      +         + 
Sbjct: 2   GYPPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVA 61

Query: 296 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 335
                +  I    L         V  +N LG      + +
Sbjct: 62  KKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCL 101

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 21/119 (17%)

Query: 340 GPKPGPPRNVS-VTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEE 397
           G  P  P N+S +  +  N  V  W+P  E      + L  +R+                
Sbjct: 2   GYPPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADC------------ 49

Query: 398 NSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
                  + QG+     +      +  I    L         V  +N LG      + +
Sbjct: 50  -------QYQGDTIPDCVAKKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCL 101

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 10/98 (10%)

Query: 151 PPAFTIKPEAMYQR-KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV---- 205
           PP    +   +     +G+SV + C+A   +G  +PT++W +       +          
Sbjct: 3   PPTVQARQSIVNATANLGQSVTLVCDA---DGFPEPTMSWTKDGEPIENEEEDDEKHIFS 59

Query: 206 --GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
                +TI  + + D   Y C+  N+      +  L V
Sbjct: 60  DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ--NGSLLFTRVNQNHQGRYTCTPY 132
            + C     P          + +    +  +  +    +  L    V++N +  Y C   
Sbjct: 24  TLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAE 83

Query: 133 NAHGTQGSSGQMEVLVR 149
           N  G Q +S  ++V  +
Sbjct: 84  NKAGEQDASIHLKVFAK 100

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 15/78 (19%), Positives = 27/78 (34%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
              C + A+          D+ L +  +        +  L   RV  + +G YT    N+
Sbjct: 20  NFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNS 79

Query: 135 HGTQGSSGQMEVLVRKPP 152
           +GT+     + V     P
Sbjct: 80  YGTKEEIVFLNVTRHSEP 97

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 8/99 (8%)

Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN--- 208
           P F +KP    +   G+S + +C       +  P +TW + D       +          
Sbjct: 2   PRFIVKPYGT-EVGEGQSANFYCRV---IASSPPVVTWHKDDRELKQSVKYMKRYNGNDY 57

Query: 209 -ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
            +TI  ++  D G Y     N   T  +   L V     
Sbjct: 58  GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 2e-07
 Identities = 11/82 (13%), Positives = 21/82 (25%), Gaps = 5/82 (6%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
            P  +        S+ + W             Y + Y    +      P          +
Sbjct: 4   RPKGLAFTDVDVDSIKIAWESPQGQV----SRYRVTYSSPEDGIHELFPAPDGEEDTAEL 59

Query: 307 NRLTPATTYEFQVVGKNELGDG 328
             L P + Y   VV  ++  + 
Sbjct: 60  QGLRPGSEYTVSVVALHDDMES 81

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 29/106 (27%)

Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
            P+ ++ T+V+ +   I+W+ P                            + + + Y   
Sbjct: 4   RPKGLAFTDVDVDSIKIAWESP----------------------------QGQVSRYRVT 35

Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
           Y    +      P          +  L P + Y   VV  ++  + 
Sbjct: 36  YSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMES 81

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 2e-07
 Identities = 15/118 (12%), Positives = 23/118 (19%), Gaps = 23/118 (19%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
             PP  V  + ++ +   I+W                Y                      
Sbjct: 2   MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTN--------------- 46

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                               +    +  L P T YEF V+          S      T
Sbjct: 47  -------IPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTT 97

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 11/96 (11%), Positives = 21/96 (21%), Gaps = 3/96 (3%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD--WLPIPVTPPGST 302
              P  +     +  ++ + W            +   +                    + 
Sbjct: 2   MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 61

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
              +  L P T YEF V+          S      T
Sbjct: 62  SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTT 97

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 4e-07
 Identities = 13/112 (11%), Positives = 32/112 (28%), Gaps = 20/112 (17%)

Query: 342 KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           +P  PR++ ++   + F+++W   L               +                   
Sbjct: 5   QPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFE------------------- 45

Query: 402 GEYREQGNKDWLPIPVTPPG-STQITINRLTPATTYEFQVVGKNELGDGMLS 452
             Y+   +       +        +    L P++TY  +V  +   G  +  
Sbjct: 46  VVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSG 97

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 4e-06
 Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 6/93 (6%)

Query: 245 QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIW-----YREQGNKDWLPIPVTPP 299
           QP  P ++     +    L W            +         Y+   +       +   
Sbjct: 5   QPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSN 64

Query: 300 G-STQITINRLTPATTYEFQVVGKNELGDGMLS 331
                +    L P++TY  +V  +   G  +  
Sbjct: 65  TSQATLGPEHLMPSSTYVARVRTRLAPGSRLSG 97

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 46.1 bits (108), Expect = 4e-07
 Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 3/98 (3%)

Query: 246 PHAPYNITGVA---TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
              P N+ G         ++   +P           YV W R+     W    +      
Sbjct: 5   FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQN 64

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKG 340
            I I        Y  +VV  N+ G+  ++   VV   G
Sbjct: 65  NIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSG 102

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 39.6 bits (91), Expect = 7e-05
 Identities = 22/116 (18%), Positives = 32/116 (27%), Gaps = 23/116 (19%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
              P NV       N  VISW P  E                +             + Y+
Sbjct: 5   FKNPDNVVGQGTEPNNLVISWTPMPEI------------EHNAPNF----------HYYV 42

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
              R+     W    +       I I        Y  +VV  N+ G+  ++   VV
Sbjct: 43  SWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVV 98

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 4e-07
 Identities = 11/112 (9%), Positives = 26/112 (23%), Gaps = 19/112 (16%)

Query: 342 KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           KP  P N++V    +  ++                       +    +         +  
Sbjct: 1   KPRAPGNLTVHTNVSDTLLLT-------------------WSNPYPPDNYLYNHLTYAVN 41

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
                      +        S +I  + L    +Y  +V    +  +   S 
Sbjct: 42  IWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSE 93

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 5/93 (5%)

Query: 245 QPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW----LPIPVTPP 299
           +P AP N+T       ++ L W   Y     L  +           D     +       
Sbjct: 1   KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLE 60

Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSN 332
            S +I  + L    +Y  +V    +  +   S 
Sbjct: 61  PSLRIAASTLKSGISYRARVRAWAQAYNTTWSE 93

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.6 bits (107), Expect = 4e-07
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW--LPIPVTPPGSTQI 304
           AP N+   + T  S+ LEW    +      Q Y + Y     + +  + +P     +T+ 
Sbjct: 3   APKNLRVGSRTATSLDLEWDNSEAEA----QEYKVVYSTLAGEQYHEVLVPKGIGPTTKT 58

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVV 336
           T+  L P T Y   +         + + +   
Sbjct: 59  TLTDLVPGTEYGVGISAVMNSKQSIPATMNAR 90

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.8 bits (92), Expect = 5e-05
 Identities = 15/114 (13%), Positives = 29/114 (25%), Gaps = 27/114 (23%)

Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
            P+N+ V         + W       +  Q Y + Y T                      
Sbjct: 3   APKNLRVGSRTATSLDLEWDNS---EAEAQEYKVVYSTLA-------------------- 39

Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
                    + +P     +T+ T+  L P T Y   +         + + +   
Sbjct: 40  ---GEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNAR 90

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 5e-07
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 7/110 (6%)

Query: 244 TQPHAPYNITGVATE---FSVTLEWLPGYSGG-PDLKQNYVIWYREQGNKDWLPIPVTPP 299
            +P+ P+N++ + +E     + L W          LK N     ++      +P   T  
Sbjct: 3   VKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTAS 62

Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSN---IVVVKTKGPKPGPP 346
             +  T+  L P T Y F++    E G G  S+        T   +P   
Sbjct: 63  TRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKE 112

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 25/123 (20%)

Query: 342 KPGPPRNVSVTEVNNG-FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
           KP PP N+SV        ++                       +W   +   +   + + 
Sbjct: 4   KPNPPHNLSVINSEELSSILKL---------------------TWTNPSIKSVIILKYNI 42

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN---IVVV 457
               ++      +P   T    +  T+  L P T Y F++    E G G  S+       
Sbjct: 43  QYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 102

Query: 458 KTK 460
            T 
Sbjct: 103 ITY 105

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (106), Expect = 9e-07
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 6/111 (5%)

Query: 240 VVEGTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT-- 297
           VV  ++PH P  + G  T  S+ L W           Q   + +  +     +       
Sbjct: 13  VVPLSKPHPP--VVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIY 70

Query: 298 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRN 348
              +T+  +  L P T Y+F++   +  G+   S +V V T   +   P +
Sbjct: 71  TGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT--TRESGPSS 119

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 23/119 (19%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
              P    V +V  +   + W    +                                  
Sbjct: 16  LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRF--------------------- 54

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
               E+  K      +    +T+  +  L P T Y+F++   +  G+   S +V V T 
Sbjct: 55  -SIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATT 112

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 9e-07
 Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 14/106 (13%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----- 205
           PP+            +G    + C     +G+     TW +   V     +         
Sbjct: 2   PPSKPTVNIPS-SATIGNRAVLTCSE--QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSS 58

Query: 206 ------GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQ 245
                  G +  + L   D G Y C   N   T + +  + +E  +
Sbjct: 59  YVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 104

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 9e-07
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 4/82 (4%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
            P ++        ++ + W P  S       N+++ Y    N++ +      P    + +
Sbjct: 3   PPTDLRFTNIGPDTMRVTWAPPPSIDLT---NFLVRYSPVKNEEDVAELSISPSDNAVVL 59

Query: 307 NRLTPATTYEFQVVGKNELGDG 328
             L P T Y   V    E  + 
Sbjct: 60  TNLLPGTEYVVSVSSVYEQHES 81

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 3e-05
 Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 28/106 (26%)

Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
           PP ++  T +  +   ++W P                               +  ++L  
Sbjct: 3   PPTDLRFTNIGPDTMRVTWAP---------------------------PPSIDLTNFLVR 35

Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
           Y    N++ +      P    + +  L P T Y   V    E  + 
Sbjct: 36  YSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHES 81

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
           AP ++     T  S++ +W P           Y +    +     +      P S+ + +
Sbjct: 2   APTDLKFTQVTPTSLSAQWTPPNVQL----TGYRVRVTPKEKTGPMKEINLAPDSSSVVV 57

Query: 307 NRLTPATTYEFQVVGKNELGDGMLSNIVVV 336
           + L  AT YE  V    +      +  VV 
Sbjct: 58  SGLMVATKYEVSVYALKDTLTSRPAQGVVT 87

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-05
 Identities = 17/114 (14%), Positives = 29/114 (25%), Gaps = 29/114 (25%)

Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
            P ++  T+V        W PP                              +   Y   
Sbjct: 2   APTDLKFTQVTPTSLSAQWTPP----------------------------NVQLTGYRVR 33

Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
              +     +      P S+ + ++ L  AT YE  V    +      +  VV 
Sbjct: 34  VTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVT 87

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 244 TQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
           +    P     +  T  +VTL+W      G     +Y++  R+  N  WL    +     
Sbjct: 1   SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILEN 60

Query: 303 QITINRLTPATTYEFQVVGKNELGDG----MLSNIVVVKT 338
           + T++ LT    YEF+V+ KN  G        S+ +  + 
Sbjct: 61  EFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRD 100

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 154 FTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-------------KN 200
           F  KP+     KVGE +    + +  +  +KPTI W +   + L              + 
Sbjct: 3   FIEKPQGG-TVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER 61

Query: 201 RVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
             ++    + I   +    G Y C V+ +      +  L V  +    P
Sbjct: 62  HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 110

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 3/91 (3%)

Query: 245 QPHAPYNITGVATEFS---VTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
           QP  P NIT  A   +   +++ W   +S      +                  +     
Sbjct: 1   QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQ 60

Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSN 332
               I+       +  Q+  + E G G  S 
Sbjct: 61  HHCVIHDAWSGLRHVVQLRAQEEFGQGEWSE 91

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 18/112 (16%), Positives = 30/112 (26%), Gaps = 21/112 (18%)

Query: 342 KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           +P PP N++VT V                L   +   +  + S+  L        E S  
Sbjct: 1   QPDPPANITVTAVAR----------NPRWLSVTWQDPHSWNSSFYRLRFELRYRAERS-- 48

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
                          +         I+       +  Q+  + E G G  S 
Sbjct: 49  ---------KTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSE 91

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 3e-06
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV------GGNITIEGLRRVD 218
             G+ V ++C     EG ++P I W +   V    +++ I        G ++++ + R D
Sbjct: 9   SQGQPVKLNCSV---EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 65

Query: 219 FGYYECVVSNEVATIV-QAAQLVVEG 243
            G Y C V +   T + Q   L VEG
Sbjct: 66  AGRYWCQVEDGGETEISQPVWLTVEG 91

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 18 GTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVE 54
          G L +  V   D+G Y C+V +G     +   +L VE
Sbjct: 54 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 3e-06
 Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 21/119 (17%)

Query: 342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
            P  P  ++   V+     +SW  P E    I  Y + Y                     
Sbjct: 2   VPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVN----------------- 44

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                 +       + V  P +  + I  L  +  Y + V  +N  G G     ++   
Sbjct: 45  ---DDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLA 100

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 4e-06
 Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 5/101 (4%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWY----REQGNKDWLPIPVTPPG 300
           P  P  +     +     L W        ++    V +       +       + V  P 
Sbjct: 3   PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPK 62

Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGP 341
           +  + I  L  +  Y + V  +N  G G     ++     P
Sbjct: 63  NRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQP 103

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.9 bits (102), Expect = 3e-06
 Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 14/111 (12%)

Query: 345 PPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
           PP   +VT +++  V + W  P      I  + ++YR  G  K                 
Sbjct: 2   PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQT------------- 48

Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 454
             +               S   ++  L P  TY F+++      D   SN 
Sbjct: 49  TNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 99

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 13/99 (13%)

Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP---------- 295
           P  P N+T + ++ SV L W+   + G  +    V +      K+W              
Sbjct: 3   PTPP-NVTRL-SDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKW 60

Query: 296 -VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 333
                 S   ++  L P  TY F+++      D   SN 
Sbjct: 61  NSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 99

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 5e-06
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 7/90 (7%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
           AP ++     T  +  L W             Y++ +   G +      + P G T   +
Sbjct: 4   APRDLEAKEVTPRTALLTWTEPPVRP----AGYLLSFHTPGGQTQ--EILLPGGITSHQL 57

Query: 307 NRLTPATTYEFQVVGKNELGDGMLSNIVVV 336
             L P+T+Y  ++            +    
Sbjct: 58  LGLFPSTSYNARLQAMWGQSLLPPVSTSFT 87

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 31/114 (27%)

Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
            PR++   EV     +++W  P         YL+ + T G                    
Sbjct: 4   APRDLEAKEVTPRTALLTWTEP---PVRPAGYLLSFHTPGGQTQ---------------- 44

Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
                        + P G T   +  L P+T+Y  ++            +    
Sbjct: 45  -----------EILLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFT 87

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 5e-06
 Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 5/93 (5%)

Query: 245 QPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
           +  AP  I     T+ +  + W    +          + Y  +                Q
Sbjct: 1   RLDAPSQIEVKDVTDTTALITWFKPLAEI----DGIELTYGIKDVPGDRTTIDLTEDENQ 56

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 336
            +I  L P T YE  ++ +        +     
Sbjct: 57  YSIGNLKPDTEYEVSLISRRGDMSSNPAKETFT 89

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 9e-05
 Identities = 15/117 (12%), Positives = 27/117 (23%), Gaps = 29/117 (24%)

Query: 342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
           +   P  + V +V     +I+W  P                              E +  
Sbjct: 1   RLDAPSQIEVKDVTDTTALITWFKP----------------------------LAEIDGI 32

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
              Y  +                Q +I  L P T YE  ++ +        +     
Sbjct: 33  ELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFT 89

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 5e-06
 Identities = 21/110 (19%), Positives = 30/110 (27%), Gaps = 20/110 (18%)

Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGV------------- 195
           R  P       A     VG  V+  C+        +P I W +                 
Sbjct: 2   RHRPILQAGLPANASTVVGGDVEFVCKV---YSDAQPHIQWIKHVEKNGSKYGPDGLPYL 58

Query: 196 ----ALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
               A   N        + I  +   D G Y C+  N +     +A L V
Sbjct: 59  KVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 10  TRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
                K+   L I  V  +D+G Y C   N IG      A+L V
Sbjct: 66  VNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISF-HSAWLTV 108

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.2 bits (98), Expect = 7e-06
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
           +P  I+    TE S T+ W P  S       +Y + Y          + V     T+  +
Sbjct: 3   SPKGISFSDITENSATVSWTPPRSRV----DSYRVSYVPITGGTPNVVTV-DGSKTRTKL 57

Query: 307 NRLTPATTYEFQVVGKNELGDG 328
            +L P   Y   ++      + 
Sbjct: 58  VKLVPGVDYNVNIISVKGFEES 79

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 30/107 (28%)

Query: 344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402
           G P+ +S +++  N   +SW PP                            R   +SY  
Sbjct: 2   GSPKGISFSDITENSATVSWTPP----------------------------RSRVDSYRV 33

Query: 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
            Y          + V     T+  + +L P   Y   ++      + 
Sbjct: 34  SYVPITGGTPNVVTV-DGSKTRTKLVKLVPGVDYNVNIISVKGFEES 79

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 7e-06
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 22/120 (18%)

Query: 342 KPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
            PGPP N+ ++ +    V + ++P  +  + I  +L++ +                    
Sbjct: 10  LPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVG--------------- 54

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI-VVVKT 459
                E      +      P +  + +  L P T Y F++   N +G    S     ++T
Sbjct: 55  -----EGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 109

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 8e-05
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 241 VEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV--- 296
           V    P  P N+        SVTL++ PGY G   + +  V        +    + +   
Sbjct: 6   VPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQL 65

Query: 297 -TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI-VVVKT 338
              P +  + +  L P T Y F++   N +G    S     ++T
Sbjct: 66  SNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 109

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.2 bits (98), Expect = 7e-06
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 7/90 (7%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
            P ++     TE +++L W    +        Y + Y     K        P  ST   +
Sbjct: 2   NPKDLEVSDPTETTLSLRWRRPVAKF----DRYRLTYVSPSGKKN--EMEIPVDSTSFIL 55

Query: 307 NRLTPATTYEFQVVGKNELGDGMLSNIVVV 336
             L   T Y   +V +        + I   
Sbjct: 56  RGLDAGTEYTISLVAEKGRHKSKPTTIKGS 85

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 15/114 (13%), Positives = 28/114 (24%), Gaps = 31/114 (27%)

Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
            P+++ V++       + W+ P                              + + Y   
Sbjct: 2   NPKDLEVSDPTETTLSLRWRRP----------------------------VAKFDRYRLT 33

Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
           Y     K        P  ST   +  L   T Y   +V +        + I   
Sbjct: 34  YVSPSGKKN--EMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGS 85

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.2 bits (98), Expect = 8e-06
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 8/89 (8%)

Query: 151 PPAFTIKPEAMYQR--KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN 208
            P F  +P           E V + C A         T  W+            +     
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRA---RANPPATYRWKMNGTELKMGPDSRYRLVA 60

Query: 209 IT---IEGLRRVDFGYYECVVSNEVATIV 234
                   ++  D G Y+CV +N   T+V
Sbjct: 61  GDLVISNPVKAKDAGSYQCVATNARGTVV 89

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.4 bits (83), Expect = 8e-04
 Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 5/89 (5%)

Query: 53  VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG 112
            E PA   F          L     C  +ANP      W  +   L+        ++   
Sbjct: 8   EEQPAHTLFPEGSAEEKVTLT----CRARANPPAT-YRWKMNGTELKMGPDSRYRLVAGD 62

Query: 113 SLLFTRVNQNHQGRYTCTPYNAHGTQGSS 141
            ++   V     G Y C   NA GT  S 
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGTVVSR 91

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLN 52
          R  +     ++ NPV + D+G Y C  +N  G   + +A L 
Sbjct: 55 RYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR 96

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 41.7 bits (97), Expect = 9e-06
 Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 12/95 (12%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P AP N+   A T  S+TL W               +   +  N   L   VT    T  
Sbjct: 4   PTAPTNLASTAQTTSSITLSWTASTDNVG-------VTGYDVYNGTALATTVT---GTTA 53

Query: 305 TINRLTPATTYEFQVVGKNELGD-GMLSNIVVVKT 338
           TI+ L   T+Y F V  K+  G+    SN V VKT
Sbjct: 54  TISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 39.0 bits (90), Expect = 9e-05
 Identities = 22/118 (18%), Positives = 31/118 (26%), Gaps = 34/118 (28%)

Query: 343 PGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402
           P  P N++ T      +            +  Y +                         
Sbjct: 4   PTAPTNLASTAQTTSSITLSWTASTDNVGVTGYDVYNG---------------------- 41

Query: 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD-GMLSNIVVVKT 459
                          T    T  TI+ L   T+Y F V  K+  G+    SN V VKT
Sbjct: 42  -----------TALATTVTGTTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 5/95 (5%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P           +     + W    S G D+   Y + +        +            
Sbjct: 1   PDQCKPPQVTCRSATCAQVNWEVPLSNGTDV-TEYRLEWGGVEGSMQICYCGP---GLSY 56

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339
            I  L+PATTY  +V   + +G G  S +V   T 
Sbjct: 57  EIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTP 91

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 4e-05
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 29/119 (24%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           P   +   VT  +     ++W+ PL   + +  Y +++                      
Sbjct: 1   PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQ-------------- 46

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
                                    I  L+PATTY  +V   + +G G  S +V   T 
Sbjct: 47  --------------ICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTP 91

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 9/81 (11%), Positives = 24/81 (29%)

Query: 248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITIN 307
            P N+T  +   +  + W         +    V  Y  + ++              I+ +
Sbjct: 3   TPTNVTIESYNMNPIVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISDH 62

Query: 308 RLTPATTYEFQVVGKNELGDG 328
              P+ +   +V  +    + 
Sbjct: 63  VGDPSNSLWVRVKARVGQKES 83

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 9/105 (8%), Positives = 27/105 (25%), Gaps = 24/105 (22%)

Query: 345 PPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEY 404
            P NV++   N   ++ W+  +     +                            +  Y
Sbjct: 3   TPTNVTIESYNMNPIVYWEYQIMPQVPVFTV------------------------EVKNY 38

Query: 405 REQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
             + ++              I+ +   P+ +   +V  +    + 
Sbjct: 39  GVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKARVGQKES 83

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 154 FTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN----I 209
              KP +M     GES    C+    +G   PT+TW R+  V     R ++         
Sbjct: 2   ILTKPRSM-TVYEGESARFSCDT---DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 57

Query: 210 TIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
            I  ++  D G Y  VV N          L ++
Sbjct: 58  EISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 10/72 (13%), Positives = 22/72 (30%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
              C     P        K + L    + +        +   + V  + +G Y+    N+
Sbjct: 18  RFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENS 77

Query: 135 HGTQGSSGQMEV 146
            G Q +   + +
Sbjct: 78  EGKQEAEFTLTI 89

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
           +P ++   A +E S++L W            ++        +     + V P   T  T+
Sbjct: 3   SPRDLMVTASSETSISLIWTKASGPI-----DHYRITFTPSSGISSEVTV-PRDRTSYTL 56

Query: 307 NRLTPATTYEFQVVGKNELGDGMLSNI 333
             L P   Y   +  +      + S +
Sbjct: 57  TDLEPGAEYIISITAERGRQQSLESTV 83

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (84), Expect = 5e-04
 Identities = 12/111 (10%), Positives = 23/111 (20%), Gaps = 31/111 (27%)

Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
            PR++ VT  +     + W          +                              
Sbjct: 3   SPRDLMVTASSETSISLIWTKASGPIDHYRIT---------------------------- 34

Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI 454
                +         P   T  T+  L P   Y   +  +      + S +
Sbjct: 35  --FTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTV 83

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 5/92 (5%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
              P  I     ++    +EW P  +         ++ Y   G +         P  +Q 
Sbjct: 4   IDGPTQILVRDVSDTVAFVEWTPPRAK----VDFILLKYGLVGGEGGKTTFRLQPPLSQY 59

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVV 336
           ++  L P + YE  +       +   S+    
Sbjct: 60  SVQALRPGSRYEVSISAVRGTNESDASSTQFT 91

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 29/118 (24%)

Query: 341 PKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
           P    P  + V +V+     + W PP                            R + + 
Sbjct: 2   PVIDGPTQILVRDVSDTVAFVEWTPP----------------------------RAKVDF 33

Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
            L +Y   G +         P  +Q ++  L P + YE  +       +   S+    
Sbjct: 34  ILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFT 91

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 1/78 (1%)

Query: 75  VVQCHIKANPTFQYVTWTKDK-RLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYN 133
           V  C +  N     +TW KD  +     +    +      L F        G Y C   N
Sbjct: 21  VRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRN 80

Query: 134 AHGTQGSSGQMEVLVRKP 151
           +          + +  +P
Sbjct: 81  SSYCLRIKISAKFVENEP 98

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 6/90 (6%)

Query: 161 MYQRKVGESVDMHCEAQEAEGTQKPTITW----QRRDGVALPKNRVKIVGGNITIEGLRR 216
           +      E     C         K TITW     +        +R+      +     + 
Sbjct: 11  ILVSSANEIDVRPCPL--NPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKV 68

Query: 217 VDFGYYECVVSNEVATIVQAAQLVVEGTQP 246
            D G+Y CVV N    +           +P
Sbjct: 69  EDSGHYYCVVRNSSYCLRIKISAKFVENEP 98

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 4/88 (4%)

Query: 149 RKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN 208
           R+ PA  +    +     G+SV + C   E E     T+ W  R   A          G 
Sbjct: 4   RRCPAQEVARGVL-TSLPGDSVTLTCPGVEPEDN--ATVHWVLRKPAAGSHPSRWAGMGR 60

Query: 209 I-TIEGLRRVDFGYYECVVSNEVATIVQ 235
              +  ++  D G Y C  +   A  V 
Sbjct: 61  RLLLRSVQLHDSGNYSCYRAGRPAGTVH 88

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 13/98 (13%), Positives = 23/98 (23%), Gaps = 1/98 (1%)

Query: 242 EGTQPHAPYNITGVATE-FSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPG 300
           E         +T    E   V L W         +    V + R    +  L        
Sbjct: 1   EAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFA 60

Query: 301 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 338
             +    R      Y  ++   +  G+G  +       
Sbjct: 61  LERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYV 98

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 18/118 (15%), Positives = 28/118 (23%), Gaps = 25/118 (21%)

Query: 343 PGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
                 V+     N  V + WQ P E   LI  Y + YR  G                  
Sbjct: 5   DDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGD----------------- 47

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT 459
                   +  L          +    R      Y  ++   +  G+G  +       
Sbjct: 48  -------EELHLCDTRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYV 98

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 3e-05
 Identities = 14/91 (15%), Positives = 28/91 (30%)

Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQIT 305
              P N+   A   +  L      S  PD+    +      G +      V     +  T
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCT 61

Query: 306 INRLTPATTYEFQVVGKNELGDGMLSNIVVV 336
            + L+P   Y   V    +  + +  +  ++
Sbjct: 62  FDNLSPGLEYNVSVYTVKDDKESVPISDTII 92

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 12/116 (10%), Positives = 27/116 (23%), Gaps = 26/116 (22%)

Query: 343 PGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402
             PP N+ +    +  V++          I  Y I                         
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERSTTPDITGYRI------------------------- 36

Query: 403 EYREQGNKDWLPIPVTPPGST-QITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 457
                  +    +           T + L+P   Y   V    +  + +  +  ++
Sbjct: 37  TTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTII 92

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 2/86 (2%)

Query: 245 QPHAPYNITGVATE--FSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
              AP  +     +    V L WLP           Y +          +       G T
Sbjct: 4   LLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRT 63

Query: 303 QITINRLTPATTYEFQVVGKNELGDG 328
           +  ++ L   T Y F V  +      
Sbjct: 64  ECVLSNLRGRTRYTFAVRARMAEPSF 89

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 7e-05
 Identities = 9/108 (8%), Positives = 18/108 (16%), Gaps = 22/108 (20%)

Query: 342 KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
               P  +     +    +                                       Y 
Sbjct: 4   LLDAPVGLVARLADESGHVVL----------------------RWLPPPETPMTSHIRYE 41

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
            +         +       G T+  ++ L   T Y F V  +      
Sbjct: 42  VDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSF 89

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 4e-05
 Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 7/102 (6%)

Query: 245 QPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT--PPGS 301
           +  AP ++  V        + W    +     +              W   P+       
Sbjct: 2   RLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQ 61

Query: 302 TQITINRLTPATTYEFQVVGKNELGDGML----SNIVVVKTK 339
             I +  LTP T YEFQV  K   G+       S  +  +TK
Sbjct: 62  EWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTK 103

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 24/124 (19%), Positives = 37/124 (29%), Gaps = 27/124 (21%)

Query: 342 KPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
           +   P ++ V  V      ISW+         ++   + RT                   
Sbjct: 2   RLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGH-------------- 47

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGML----SNIVV 456
                     +  P+         I +  LTP T YEFQV  K   G+       S  + 
Sbjct: 48  --------TWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLA 99

Query: 457 VKTK 460
            +TK
Sbjct: 100 FRTK 103

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 5e-05
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 14/105 (13%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR--------- 201
              F ++P+   +  VG S+        A   + P + W +   V L             
Sbjct: 4   IGLFVMRPQDG-EVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62

Query: 202 ----VKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
                K+    + I   +    G Y C VS +         L V 
Sbjct: 63  YDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 5e-05
 Identities = 13/114 (11%), Positives = 32/114 (28%), Gaps = 28/114 (24%)

Query: 342 KPGPPRNVSVTEVN--NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENS 399
           KP PP+N+ +  +       +SW+ P   ++   Y+ + +                    
Sbjct: 1   KPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCV------------------ 42

Query: 400 YLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
              + + +  ++           T  T   +         V  ++       S 
Sbjct: 43  ---QVQGKSKREK-----KDRVFTDKTSATVICRKNASISVRAQDRYYSSSWSE 88

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 5e-05
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 3/97 (3%)

Query: 246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI---PVTPPGST 302
           P +P          +  +++    + G      Y   +R  G + W              
Sbjct: 3   PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 62

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 339
            +TI  L P TTY  ++   N  G G +S     KT+
Sbjct: 63  IVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 99

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 4e-04
 Identities = 21/120 (17%), Positives = 33/120 (27%), Gaps = 23/120 (19%)

Query: 342 KPGPPRNVSVTEVNNGFVISWQPPLERASL-IQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
            P  P    V   ++   + +  P     + I  Y  ++R  G                 
Sbjct: 2   TPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEV-------------- 47

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
                                   +TI  L P TTY  ++   N  G G +S     KT+
Sbjct: 48  --------WHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 99

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 5e-05
 Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 4/109 (3%)

Query: 242 EGTQPHAPYNITGVA--TEFSVTLEWLP--GYSGGPDLKQNYVIWYREQGNKDWLPIPVT 297
               P  P ++T  A  T  ++ + W P      G     N   +      +    +   
Sbjct: 7   PAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFP 66

Query: 298 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPP 346
              ST + + RL         V   +  G+ + S +  V  +   P  P
Sbjct: 67  TADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPTP 115

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 15/104 (14%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG---- 206
           PP+            +G    + C   +  G+     +W +     L  +  K       
Sbjct: 2   PPSKPTISV-PSSVTIGNRAVLTCSEHD--GSPPSEYSWFKDGISMLTADAKKTRAFMNS 58

Query: 207 --------GNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
                   G++  + +   D G Y C   N   T +++    ++
Sbjct: 59  SFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.5 bits (91), Expect = 7e-05
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG---GN 208
             F   P    + K GE   + C+      +  PTI W+ +    + K  V+ +      
Sbjct: 2   LMFKNAPTPQ-EFKEGEDAVIVCDV---VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY 57

Query: 209 ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
           + I G+++ D G Y C         +    + V
Sbjct: 58  LQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 58  KVTFT--PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL 115
           K+ F   PT Q        V+ C + ++       W    R +   +    +V+ N  L 
Sbjct: 1   KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI-IWKHKGRDVILKKDVRFIVLSNNYLQ 59

Query: 116 FTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
              + +  +G Y C        + +   ++V+V
Sbjct: 60  IRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 92

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 32/126 (25%)

Query: 343 PGPPRNVSVTEVN-------NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRP 395
           P PP  ++ T +N           + W+ P                   W  L       
Sbjct: 1   PDPPIALNWTLLNVSLTGIHADIQVRWEAP-----------RNADIQKGWMVLE------ 43

Query: 396 EENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD--GMLSN 453
               Y  +Y+E     W    + P  +T + +  L     YE +V  K       G  S 
Sbjct: 44  ----YELQYKEVNETKW--KMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSE 97

Query: 454 IVVVKT 459
           ++ V  
Sbjct: 98  VLYVTL 103

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 3/91 (3%)

Query: 251 NITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYRE-QGNKDWLPIPVTPPGSTQITINRL 309
           N++       + + W    +         + +  + +   +     + P  +T + +  L
Sbjct: 13  NVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVPVYSL 72

Query: 310 TPATTYEFQVVGKNELGD--GMLSNIVVVKT 338
                YE +V  K       G  S ++ V  
Sbjct: 73  KVDKEYEVRVRSKQRNSGNYGEFSEVLYVTL 103

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 75  VVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA 134
           V++C I+ N      +W KD +     +    +    GSL+F R   + +G Y C     
Sbjct: 21  VLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETP 80

Query: 135 HGTQGSSGQMEVLVRK 150
            G   S     +  RK
Sbjct: 81  AGVASSR---VISFRK 93

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 12/97 (12%), Positives = 28/97 (28%), Gaps = 8/97 (8%)

Query: 150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP----KNRVKIV 205
           K P    +P  +  R       + C  +      +      ++DG +         ++  
Sbjct: 1   KYPVLKDQPAEVLFR-ENNPTVLECIIEG---NDQGVKYSWKKDGKSYNWQEHNAALRKD 56

Query: 206 GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
            G++     +  D G+Y+C                 +
Sbjct: 57  EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 93

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 4/81 (4%)

Query: 166 VGESVDMHC---EAQEAEGTQKPTITWQRRDGVALPKNRVKIV-GGNITIEGLRRVDFGY 221
           V     + C   E  + E  + P + W +     L  N         + +  +     G 
Sbjct: 13  VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGN 72

Query: 222 YECVVSNEVATIVQAAQLVVE 242
           Y C  S            V+E
Sbjct: 73  YTCHASYTYLGKQYPITRVIE 93

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 16/108 (14%)

Query: 55  FPAKVTFTPTVQYLPFRLQGVVQCHI------KANPTFQYVTWTKDKRLLEPYQTKDIVV 108
           + A+  F    Q LP    G + C        + N   +   +   K             
Sbjct: 1   YNAQAIFK---QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCK---PLLLDNIHFS 54

Query: 109 MQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG----QMEVLVRKPP 152
                L+   V + H+G YTC     +  +        +   L    P
Sbjct: 55  GVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKP 102

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 1/90 (1%)

Query: 244 TQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGST 302
                      V+     + L W P        ++  + +  +    +W  +   P    
Sbjct: 6   MLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKD 65

Query: 303 QITINRLTPATTYEFQVVGKNELGDGMLSN 332
           Q  +  L  A  Y  Q+        G  S 
Sbjct: 66  QFELCGLHQAPVYTLQMRCIRSSLPGFWSP 95

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 22/110 (20%), Positives = 32/110 (29%), Gaps = 11/110 (10%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P  P  +  +  TE    L W P      +    Y I     G         TP  +   
Sbjct: 1   PDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPL--QAETPGSAVDY 54

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTKGPKPGPPRNVSVTEV 354
            ++ L   T Y   V G         ++I            PR++   EV
Sbjct: 55  PLHDLVLHTNYTATVRGLRGPNLTSPASITFTTG----LEAPRDLEAKEV 100

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 14/84 (16%)

Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV------GGNITIEGLRRVD 218
             GE V++ CE           + W +     +P  + +           + IEG  + D
Sbjct: 13  YCGERVELECEV----SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKAD 68

Query: 219 FGYYECVVSNEVATIVQAAQLVVE 242
              Y  + +   ++    A+L V+
Sbjct: 69  AAEYSVMTTGGQSS----AKLSVD 88

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 6/82 (7%)

Query: 248 APYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITI 306
            P        TE ++T+ W             + +       +  +      P     TI
Sbjct: 4   PPRRARVTDATETTITISWRTKTET----ITGFQVDAVPANGQTPIQR-TIKPDVRSYTI 58

Query: 307 NRLTPATTYEFQVVGKNELGDG 328
             L P T Y+  +   N+    
Sbjct: 59  TGLQPGTDYKIYLYTLNDNARS 80

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 16/106 (15%), Positives = 25/106 (23%), Gaps = 30/106 (28%)

Query: 345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGE 403
           PPR   VT+       ISW+                                    +  +
Sbjct: 4   PPRRARVTDATETTITISWRTK----------------------------TETITGFQVD 35

Query: 404 YREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
                 +  +      P     TI  L P T Y+  +   N+    
Sbjct: 36  AVPANGQTPIQR-TIKPDVRSYTITGLQPGTDYKIYLYTLNDNARS 80

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 13/90 (14%)

Query: 165 KVGESVDMH--CEAQEAEGTQKPTITWQRRDGVALPKN-----------RVKIVGGNITI 211
           ++  +V+MH  C     +G   P++ W     V    +              +  G + +
Sbjct: 8   QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 67

Query: 212 EGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
                V+ G Y  + +N       +     
Sbjct: 68  NQPTHVNNGNYTLLAANPFGQASASIMAAF 97

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 12/88 (13%), Positives = 27/88 (30%)

Query: 54  EFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGS 113
             P +V   P   + P   Q  ++C ++       +T    +   E  +   +      +
Sbjct: 2   WTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVT 61

Query: 114 LLFTRVNQNHQGRYTCTPYNAHGTQGSS 141
                   +H  +++C        QG  
Sbjct: 62  TTVLVRRDHHGAQFSCRTELDLRPQGLE 89

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.004
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNI- 209
           P    + P   +Q  VG+ + + C+ +      + T+   R +     +  V        
Sbjct: 4   PERVELAPLPSWQP-VGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTT 62

Query: 210 TIEGLRRVDFGYYECVVSNEV 230
           T+   R      + C    ++
Sbjct: 63  TVLVRRDHHGAQFSCRTELDL 83

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 29/124 (23%)

Query: 342 KPGPPRNVSVTEVN-----NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPE 396
           +P PPRN+++             + W PP                   W T+        
Sbjct: 2   EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITD-----------VKTGWFTME------- 43

Query: 397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD-GMLSNIV 455
              Y    + +  ++W          TQ  +  L P   Y  Q   K + G     S   
Sbjct: 44  ---YEIRLKPEEAEEWEIHFTGHQ--TQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQES 98

Query: 456 VVKT 459
            V+ 
Sbjct: 99  SVEM 102

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 11/103 (10%)

Query: 245 QPHAPYNITGV-----ATEFSVTLEWLPGYSGGPD---LKQNYVIWYREQGNKDWLPIPV 296
           +P  P N+T         +  + ++W P              Y I  + +  ++W     
Sbjct: 2   EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFT 61

Query: 297 TPPGSTQITINRLTPATTYEFQVVGKNELGD-GMLSNIVVVKT 338
                TQ  +  L P   Y  Q   K + G     S    V+ 
Sbjct: 62  GHQ--TQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQESSVEM 102

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 23/115 (20%), Positives = 33/115 (28%), Gaps = 28/115 (24%)

Query: 342 KPGPPRNVSVTEVNNG---FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEEN 398
           KP PP NV    V +      ++WQ P        + L  +                   
Sbjct: 7   KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFL------------------ 48

Query: 399 SYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSN 453
                YR      W  + ++    T  TI        Y  QV  K+    G  S+
Sbjct: 49  ----RYRPLILDQWQHVELSN--GTAHTITDAYAGKEYIIQVAAKDN-EIGTWSD 96

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 4/91 (4%)

Query: 245 QPHAPYNITGVATE---FSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGS 301
           +P  P N+           + + W    +           + R +         V     
Sbjct: 7   KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNG 66

Query: 302 TQITINRLTPATTYEFQVVGKNELGDGMLSN 332
           T  TI        Y  QV  K+    G  S+
Sbjct: 67  TAHTITDAYAGKEYIIQVAAKDN-EIGTWSD 96

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 4/97 (4%)

Query: 241 VEGTQPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPP 299
           + G++     +++ V  T+ S+ L W P  S        Y I     G    +       
Sbjct: 1   MRGSEVPQLTDLSFVDITDSSIGLRWTPLNSSTII---GYRITVVAAGEGIPIFEDFVDS 57

Query: 300 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV 336
                T+  L P   Y+  V+     G+   + +   
Sbjct: 58  SVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQ 94

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 27/115 (23%)

Query: 343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYL 401
           P  P+       + N   ++     +  S I++YL++YR   S                 
Sbjct: 1   PSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSE---------------- 44

Query: 402 GEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV 456
                     W P    P GS  + +  L     YE  VV +N+ G    ++ V 
Sbjct: 45  ----------WKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVF 89

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 7e-04
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQI 304
           P AP     +     S+ +  +    G       + +      + +W P    P GS  +
Sbjct: 1   PSAPKLEGQMGEDGNSIKVNLIKQDDG--GSPIRHYLVRYRALSSEWKPEIRLPSGSDHV 58

Query: 305 TINRLTPATTYEFQVVGKNELGDGMLSNIVV 335
            +  L     YE  VV +N+ G    ++ V 
Sbjct: 59  MLKSLDWNAEYEVYVVAENQQGKSKAAHFVF 89

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 9/41 (21%), Positives = 22/41 (53%)

Query: 108 VMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV 148
           ++ NG L    + ++  G Y  T Y+ +GT+  +  +++ +
Sbjct: 56  ILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRI 96

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 6e-04
 Identities = 11/33 (33%), Positives = 14/33 (42%)

Query: 11 RVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGE 43
             I  +G L I  +  DDSG Y   V +  G 
Sbjct: 53 AFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT 85

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 4e-04
 Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 3/82 (3%)

Query: 257 TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE 316
              S  ++W             Y++ +R + +         P      TI  L P   YE
Sbjct: 14  QPNSHPIQWNAPQPSHIS---KYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYE 70

Query: 317 FQVVGKNELGDGMLSNIVVVKT 338
            Q++   + G   ++      T
Sbjct: 71  GQLISIQQYGHQEVTRFDFTTT 92

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 36.4 bits (83), Expect = 8e-04
 Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 10/84 (11%)

Query: 165 KVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV------GGNITIEGLRRVD 218
           K G+   ++C              + +           +I       G  +  +     D
Sbjct: 16  KAGDVTMIYCMY---GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPED 72

Query: 219 FGYYECVVSNEVATIV-QAAQLVV 241
            G Y C V N V      + +L V
Sbjct: 73  EGVYTCEVDNGVGKPQKHSLKLTV 96

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 15  KKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNVEFPAK 58
           +    L I  V   D G Y C   +   + + A   L VE P  
Sbjct: 78  EGKVALRIQNVRFSDEGGYTCFFRDHSYQEE-AAVELKVEDPFY 120

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 245 QPHAPYNITGVA-TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
            P AP N+T    +E  + L W   +    +    +++ YR   +  W    V      +
Sbjct: 2   IPWAPENLTLHKLSESQLELNWNNRF---LNHCLEHLVQYRTDWDHSWTEQSVDY--RHK 56

Query: 304 ITINRLTPATTYEFQVVGKNELGDG 328
            ++  +     Y F+V  +     G
Sbjct: 57  FSLPSVDGQKRYTFRVRSRFNPLCG 81

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 30/109 (27%)

Query: 342 KPGPPRNVSVTEVNNGFV-ISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSY 400
            P  P N+++ +++   + ++W        L                             
Sbjct: 2   IPWAPENLTLHKLSESQLELNWNNRFLNHCLEHLV------------------------- 36

Query: 401 LGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDG 449
             +YR   +  W    V      + ++  +     Y F+V  +     G
Sbjct: 37  --QYRTDWDHSWTEQSVDY--RHKFSLPSVDGQKRYTFRVRSRFNPLCG 81

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 8/35 (22%), Positives = 13/35 (37%)

Query: 19 TLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV 53
          +  +      D+G Y C +    G   +  A L V
Sbjct: 61 SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 7/101 (6%)

Query: 245 QPHAPYNITGVA-----TEFSVTLEWL-PGYSGGPDLKQNYVIWYREQGNKDWLPIPVTP 298
           QP  P  +          +  + ++W  P            +   R +  K         
Sbjct: 2   QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFA 61

Query: 299 PGSTQITINRLTPATTYEFQVVGKNELGD-GMLSNIVVVKT 338
              T+  I  L P   Y  QV  K + G     S    ++ 
Sbjct: 62  GQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQI 102

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 20/124 (16%), Positives = 31/124 (25%), Gaps = 29/124 (23%)

Query: 342 KPGPPRNVSVTEVNNG-----FVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPE 396
           +P PP  ++V             I W PP        ++ + Y      +          
Sbjct: 2   QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPE---------- 51

Query: 397 ENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD-GMLSNIV 455
                        K            T+  I  L P   Y  QV  K + G     S   
Sbjct: 52  -------------KAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPAT 98

Query: 456 VVKT 459
            ++ 
Sbjct: 99  FIQI 102

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 25/118 (21%)

Query: 343 PGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG 402
             PPR +       G ++ W PP      +  Y++                         
Sbjct: 8   LSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVL------------------------- 42

Query: 403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK 460
           E R+      +  P      T++ +  L     YEF++V          SN   V T 
Sbjct: 43  EGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTS 100

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 5/87 (5%)

Query: 243 GTQPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV---TPP 299
           GT+  +P ++   A  F   L W P           Y +     G + W  I     T  
Sbjct: 1   GTELPSPPSVWFEAEFFHHILHWTPIPQQSEST--CYEVALLRYGIESWNSISQCSQTLS 58

Query: 300 GSTQITINRLTPATTYEFQVVGKNELG 326
                    L  +  Y  +V   +   
Sbjct: 59  YDLTAVTLDLYHSNGYRARVRAVDGSR 85

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 2/88 (2%)

Query: 246 PHAPYNITGVA-TEFSVTLEWLPGYSG-GPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQ 303
              P  +     +E +V L W          +   Y  +       ++    +    +  
Sbjct: 7   MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARS 66

Query: 304 ITINRLTPATTYEFQVVGKNELGDGMLS 331
             I  L  AT YEF++   +       S
Sbjct: 67  FKIAPLETATMYEFKLQSFSAASASEFS 94

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 15/105 (14%), Positives = 26/105 (24%), Gaps = 16/105 (15%)

Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITW---------QRRDGVALP 198
           V   P  T             S    C     +G  KP + W          +     + 
Sbjct: 1   VHFAPTITFLES-------PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIH 53

Query: 199 KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVEG 243
                   G + ++    ++ G Y  +  NE     +       G
Sbjct: 54  VTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGN-- 208
            P        + + K G + ++  +     G   PT TW   D  A     + +   +  
Sbjct: 2   KPKILTASRKI-KIKAGFTHNLEVDF---IGAPDPTATWTVGDSGAALAPELLVDAKSST 57

Query: 209 --ITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE 242
             I     +R D G Y+  V NE+       +++V+
Sbjct: 58  TSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 18/102 (17%), Positives = 24/102 (23%), Gaps = 15/102 (14%)

Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--------K 199
           V  PP      E        E    HC      G   PT+ W                  
Sbjct: 2   VYYPPRVVSLEE-------PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 54

Query: 200 NRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV 241
              +I  G +        + G Y  +  N + T  Q      
Sbjct: 55  QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 96

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 13/81 (16%), Positives = 21/81 (25%)

Query: 68  LPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRY 127
           L     G     ++        T              D V   +  + F+ V +   G Y
Sbjct: 21  LTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY 80

Query: 128 TCTPYNAHGTQGSSGQMEVLV 148
           TC      G       + + V
Sbjct: 81  TCMVSEEGGQNYGEVSIHLTV 101

>d1f6fb1 b.1.2.1 (B:5-100) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 265 WLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPP-GSTQITINR--LTPATTYEFQVVG 321
           W PG  GG  L  NY + Y ++G K     P     G      ++   +    Y   V  
Sbjct: 20  WNPGTDGG--LPTNYSLTYSKEGEKTTYECPDYKTSGPNSCFFSKQYTSIWKIYIITVNA 77

Query: 322 KNELG 326
            N++G
Sbjct: 78  TNQMG 82

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 16/111 (14%), Positives = 31/111 (27%), Gaps = 11/111 (9%)

Query: 148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGG 207
           V  PP   I          GE   + C  +      +   +W+     +    R  +   
Sbjct: 4   VNGPP--IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETI 61

Query: 208 NITIEGL---------RRVDFGYYECVVSNEVATIVQAAQLVVEGTQPHAP 249
           +     +         R      Y C   N   +  +  +L  +G++   P
Sbjct: 62  STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGP 112

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 22/134 (16%), Positives = 33/134 (24%), Gaps = 26/134 (19%)

Query: 326 GDGMLSNIVVVKTKGPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSW 385
           G    S  V V TK   P  P    V    +  V+                        W
Sbjct: 1   GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLN----------------------W 38

Query: 386 KTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE 445
           + +   +   E   Y   YR     +   +              L     Y  +V    +
Sbjct: 39  EQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNK----TSAELVLPIKEDYIIEVKATTD 94

Query: 446 LGDGMLSNIVVVKT 459
            GDG  S  + +  
Sbjct: 95  GGDGTSSEQIRIPR 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	460
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.71
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.7
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.69
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.68
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.68
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.66
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.66
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.65
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.65
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.65
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.64
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.64
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.63
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.63
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.62
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.62
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.62
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.61
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.61
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	99.61
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.61
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	99.61
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.6
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.6
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.6
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.6
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.6
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.59
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.59
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.58
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.58
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.58
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.57
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.57
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.57
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.57
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.55
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.55
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.55
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.54
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	99.54
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.54
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	99.54
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	99.54
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.53
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.53
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.52
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	99.52
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.52
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.52
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.52
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.52
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.51
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.51
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.51
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.5
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.5
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.5
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.5
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.5
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	99.5
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.49
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.48
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.48
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.48
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.48
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.48
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	99.47
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	99.46
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.46
d2avga1	110	Cardiac myosin binding protein C, different domain	99.46
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.45
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.45
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.45
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.45
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	99.45
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.45
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	99.45
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	99.44
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.44
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.43
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.42
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.42
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	99.42
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.41
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.41
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.41
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.41
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.41
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.4
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.4
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.4
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.4
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	99.39
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.39
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.39
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.39
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	99.39
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.38
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.38
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	99.38
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.38
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.38
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.38
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.38
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.37
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.37
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.37
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.37
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.37
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.36
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.36
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.36
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.35
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.35
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.34
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.34
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	99.34
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.34
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.34
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.33
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.33
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.33
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.32
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.32
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	99.32
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.32
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	99.31
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.3
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.28
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.28
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	99.26
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.25
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	99.25
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.24
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.24
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.23
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.22
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.22
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.21
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	99.19
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.19
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.19
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.18
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.18
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.18
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	99.17
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.17
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.16
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.16
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.16
d2avga1	110	Cardiac myosin binding protein C, different domain	99.15
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.15
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.15
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.14
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.14
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.13
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.12
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.11
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.1
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.1
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.1
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.09
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.08
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.08
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.08
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.08
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.08
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.08
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.07
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.07
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.06
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.06
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.06
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.06
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.05
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.05
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.05
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.05
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.05
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.04
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.03
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.03
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.02
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.02
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.01
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	99.01
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.01
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.99
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.98
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.97
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.96
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	98.96
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.95
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	98.94
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.94
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	98.92
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.91
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	98.91
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.89
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.89
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.89
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.88
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	98.87
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.86
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	98.86
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	98.85
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	98.85
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	98.84
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.84
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	98.83
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.83
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	98.82
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	98.8
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	98.8
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.78
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.78
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	98.78
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	98.77
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	98.77
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.76
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	98.75
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	98.73
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	98.73
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	98.73
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.72
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	98.72
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	98.7
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	98.7
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.69
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	98.67
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	98.67
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	98.67
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	98.67
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	98.65
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.64
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.63
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	98.63
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.59
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	98.58
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.58
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.57
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	98.56
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.53
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	98.53
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.52
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.51
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.51
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.51
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.5
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.49
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.49
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.49
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	98.49
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.48
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	98.48
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.48
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.47
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.46
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.46
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.44
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.43
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.42
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	98.42
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.42
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.42
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.4
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.4
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.4
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.39
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.39
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.37
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.37
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.37
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.36
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.35
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.35
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.33
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.32
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.32
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.32
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.32
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.32
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.32
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.31
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.31
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.3
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.28
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.28
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.28
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.28
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.27
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.26
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.26
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.25
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.25
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.25
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.24
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.24
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.23
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.23
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.22
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.21
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.2
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.2
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.2
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.2
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.2
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.2
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.18
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.17
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.17
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.16
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.16
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.16
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.15
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.15
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.14
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.14
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.14
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.13
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.09
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.09
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.09
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.08
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.08
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.08
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.08
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.08
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.08
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.07
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.05
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.05
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.04
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.04
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.04
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.04
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.04
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.03
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.02
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.01
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.01
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.0
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.0
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.99
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.99
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.98
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.98
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.98
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.97
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.97
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.97
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.95
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.95
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.95
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.94
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.93
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.92
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.91
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.9
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	97.89
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.88
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.86
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.86
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.86
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.86
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.85
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.84
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.83
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.83
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.83
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.81
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.8
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.79
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.77
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.76
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.75
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.75
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.75
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.73
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.7
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.7
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.69
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.69
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.69
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.67
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.65
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.63
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.63
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.62
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.6
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.6
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.6
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.59
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.59
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.58
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.56
d2qfra1	112	Purple acid phosphatase, N-terminal domain {Kidney	97.56
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.55
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.5
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	97.5
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.5
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.49
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.49
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.49
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.49
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.48
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.48
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.48
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.48
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.47
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.44
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.43
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.42
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.42
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.4
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.4
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.4
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.38
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.37
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.35
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.33
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.33
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.32
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.32
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.31
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.3
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.3
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.29
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	97.29
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.29
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.29
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.28
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.27
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.27
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.26
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.26
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.25
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.25
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.25
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.23
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.23
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.23
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.22
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.22
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.22
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.21
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.21
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.2
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.2
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.19
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.19
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.17
d1xzwa1	119	Purple acid phosphatase, N-terminal domain {Sweet	97.17
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.16
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.16
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.16
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.15
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.15
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.15
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.15
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.14
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.14
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.13
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.12
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.11
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.11
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.11

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.3e-19  Score=129.41  Aligned_cols=112  Identities=29%  Similarity=0.486  Sum_probs=91.3

Q ss_pred             CCCCCCC-CcEEEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccc
Q psy535          325 LGDGMLS-NIVVVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG  402 (460)
Q Consensus       325 ~G~~~~s-~~~~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~  402 (460)
                      +|.|.++ ..+.+++.+.+|.+|.++.+...+ ++|.|+|++|...+++|.+|.|+|+..+.-                 
T Consensus         2 ~G~G~pss~~v~~~T~~~~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~y~~~~~~-----------------   64 (117)
T d1wfoa1           2 IGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTT-----------------   64 (117)
T ss_dssp             CCCCCCCCCCSCCCCSCCCCCCCCCCEEEEECSSEEEEECCCCSCCCSCCCEEEEEEEESSCC-----------------
T ss_pred             ccCCCCCCCCEEEECCCCCCcCCCCcEEEEecCCEEEEEEECCCCCCCceEEEeeeeeeccCC-----------------
Confidence            5777665 467788888899999999999876 699999999988788999999999875530                 


Q ss_pred             cceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                             ..|..........++|.|.+|.|++.|.|+|+|.|..|.|++|+.+.++|+
T Consensus        65 -------~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~tT~  115 (117)
T d1wfoa1          65 -------ANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTE  115 (117)
T ss_dssp             -------CSCCCEEEECTTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEECCS
T ss_pred             -------CceEeEEecCCceEEEEECCCCCCCEEEEEEEEECCCcCCCCcCCEEEECC
Confidence                   111112223356789999999999999999999999999999999999885

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2e-17  Score=114.67  Aligned_cols=90  Identities=27%  Similarity=0.451  Sum_probs=74.1

Q ss_pred             CCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCC
Q psy535          343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG  421 (460)
Q Consensus       343 P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (460)
                      |.+|.++.+...+ +++.|.|++|.+++++|.+|.|+|+..+.                          .|.........
T Consensus         1 P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~I~~Y~i~~~~~~~--------------------------~~~~~~~~~~~   54 (93)
T d2vkwa2           1 PSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSS--------------------------EWKPEIRLPSG   54 (93)
T ss_dssp             CCCCEEEEEECTTSSCEEEEEECCCCTTSCCCEEEEEEEETTS--------------------------CCCCCEEECTT
T ss_pred             CCCCccCEeEEcCCCEEEEEeeCCCCCcCceEEEEEEeeecCc--------------------------ceeeeeeccCC
Confidence            7889999888776 59999999999888899999999997653                          11111223356


Q ss_pred             cceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       422 ~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      .+++.|.+|.|++.|.|+|+|+|..|.|++|. +.++|
T Consensus        55 ~~~~~i~~L~p~t~Y~~~V~A~N~~G~s~ps~-~~~~T   91 (93)
T d2vkwa2          55 SDHVMLKSLDWNAEYEVYVVAENQQGKSKAAH-FVFRT   91 (93)
T ss_dssp             CCEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEEC
T ss_pred             ceEEEEeccccceEEEEEEEEEcCCCCcCCEe-EEEEe
Confidence            78999999999999999999999999999995 66776

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.5e-17  Score=114.53  Aligned_cols=92  Identities=30%  Similarity=0.467  Sum_probs=77.5

Q ss_pred             CCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          341 PKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       341 ~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      .+|++|.++.+...+ ++|.|+|++|...++++.+|.|+|+..+...                         |..+.   
T Consensus         9 ~vP~~P~~l~v~~~s~~si~l~W~~P~~~~g~i~~Y~v~~~~~~~~~-------------------------~~~~~---   60 (103)
T d1x5ga1           9 QLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDK-------------------------EQDVD---   60 (103)
T ss_dssp             SCCCCCSSCEEEEEETTEEEEECCCCSCCSSCCSEEEEEEEETTCCC-------------------------CCCEE---
T ss_pred             CCcccCCCcEEEEccCCEEEEEEECCcCCCccEEEEEEEEEeCCCce-------------------------eEEEe---
Confidence            458999999999887 6999999999888889999999999865411                         11111   


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ...+++.|.+|.|++.|.|+|+|.|..|.|++|+++.++|.
T Consensus        61 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~v~T~  101 (103)
T d1x5ga1          61 VSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTL  101 (103)
T ss_dssp             ECSSEEEECSCCTTCEEEEEEEEECSSCCCCBCCCCCEECC
T ss_pred             ccccEEecCCCCCCCEEEEEEEEEcCCcCcCCCCCEEEEcC
Confidence            24578999999999999999999999999999999999984

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=5.2e-17  Score=113.45  Aligned_cols=89  Identities=27%  Similarity=0.542  Sum_probs=73.3

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCCCCC-CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~-~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      +|.+|.++.+...+ +++.|+|.+|.+. +.+|.+|.|+|+..+.                         ..|..+....
T Consensus         1 PP~~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~-------------------------~~~~~~~~~~   55 (98)
T d1x5ya1           1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGS-------------------------EEWVPANKEP   55 (98)
T ss_dssp             CCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTC-------------------------CCCEESSSSC
T ss_pred             CCCCCcCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCc-------------------------ceeEEeeeec
Confidence            48899999998877 5999999998665 4589999999997653                         2355554455


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV  455 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~  455 (460)
                      ...+.|+|.+|.+++.|.|||+|+|..|.|++|...
T Consensus        56 ~~~~~~~v~~L~~~~~Y~frV~A~n~~G~s~~s~~~   91 (98)
T d1x5ya1          56 VERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLL   91 (98)
T ss_dssp             BSSSEEEEECCCTTCCEEEEEEEEETTEECCCCCCS
T ss_pred             CceeEEEECCCcCCeEEEEEEEEECCCcCCCCcCCC
Confidence            577899999999999999999999999999887653

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.69  E-value=5.2e-17  Score=114.44  Aligned_cols=96  Identities=21%  Similarity=0.323  Sum_probs=74.4

Q ss_pred             CCCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          341 PKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       341 ~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      ++|.+|.++.+....+++.|+|++|.++++++.+|.|+|+..+.-                        ..|........
T Consensus         4 dvP~~P~~~~v~~~~~sv~lsW~pp~~~~~~i~~Y~v~~~~~~~~------------------------~~~~~~~~~~~   59 (100)
T d1cfba1           4 DVPNAPKLTGITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTP------------------------ASWDAAYEKVP   59 (100)
T ss_dssp             CCCCCCEEEEEEECSSEEEEEEECCCCTTSCCCEEEEEEEESSST------------------------TCCEEEEEEEE
T ss_pred             cCCCcCcCcEEEEcCCEEEEEEcCCcccccceEEEEEEEecCCCC------------------------ceeeEEeeecC
Confidence            469999999987766799999999988888999999999975420                        00111111113


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCCCCCCcee-EeecC
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKTK  460 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~-~~~T~  460 (460)
                      ..+++.+.+|.|++.|.|+|+|.|.+|.|++|++. .++|+
T Consensus        60 ~~~~~~~~~L~p~t~Y~frV~A~n~~G~g~~S~~s~~vtT~  100 (100)
T d1cfba1          60 NTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ  100 (100)
T ss_dssp             TTCSEEEEECCSSEEEEEEEEEEETTEECCCCCCCCCEEEC
T ss_pred             CceEEEEecCCCCCEEEEEEEEEeCCcCCCCcCCCcCEEeC
Confidence            45678899999999999999999999999999865 46664

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.1e-17  Score=117.15  Aligned_cols=99  Identities=23%  Similarity=0.529  Sum_probs=73.4

Q ss_pred             CcEEEEccCCCCCCCcceEEE--eec-ceEEEEecCCCCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceec
Q psy535          332 NIVVVKTKGPKPGPPRNVSVT--EVN-NGFVISWQPPLERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQ  407 (460)
Q Consensus       332 ~~~~~~~~~~~P~~p~~~~~~--~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  407 (460)
                      ..+.+++.   |.+|..+.+.  ..+ ++|.|+|++|.+++++|.+|.|+|+..+. |...                   
T Consensus         3 ~~l~v~~~---P~~P~~p~~~~~~~~~~sv~l~W~~P~~~~~~I~~Y~v~~~~~~~~~~~~-------------------   60 (108)
T d1wf5a1           3 AHLRVRQL---PHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVL-------------------   60 (108)
T ss_dssp             CCSSCCCC---CCCCSSCEEEECSSSTTEEEEECCCCCCCSSCEEEEEEEEECTTCCCEEE-------------------
T ss_pred             cccEEecC---CCCCCCCEEEEEeccCCEEEEEEECCCCCCCccEEEEEEEEeccCCceEE-------------------
Confidence            44555544   5555554433  334 58999999998888899999999997543 2221                   


Q ss_pred             CceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          408 GNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                             ........+.++|.+|.|++.|.|||+|.|..|.|++|+.+.+.|
T Consensus        61 -------~~~~~~~~~~~~i~~L~p~t~Y~frV~A~N~~G~s~~S~~~~~~t  105 (108)
T d1wf5a1          61 -------LASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVS  105 (108)
T ss_dssp             -------ESSCCTTCCEEEEESCCTTCEEEEEEEEEESSCEEEECCCCSCEE
T ss_pred             -------eeeecCCccEEEECCCCCCCEEEEEEEEEcCCcCCCCcCCcCCEE
Confidence                   222345677899999999999999999999999999998876554

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.5e-17  Score=113.96  Aligned_cols=94  Identities=24%  Similarity=0.345  Sum_probs=77.5

Q ss_pred             CCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          341 PKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       341 ~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      .+|.+|..+++...+ ++|.|.|++|...++++.+|+|+|+..+.+....                          ....
T Consensus         2 a~P~~p~~~~~~~~s~~si~v~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~--------------------------~~~~   55 (98)
T d1x5la1           2 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSY--------------------------STLK   55 (98)
T ss_dssp             CCCCCCCCEECSCBCSSCEEEEECCCSCCCSCCCEEEEEEEESSSCCSSC--------------------------EEEE
T ss_pred             cCCCCCCceEEEeccCCEEEEEEECCCCCCCCEEEEEEEeecccccceee--------------------------EEec
Confidence            458899999998887 5999999999888889999999999765411000                          0111


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ...+.++|.+|.|++.|.|+|+|.|..|.|++|+.+.++|+
T Consensus        56 ~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~g~~S~~v~~~T~   96 (98)
T d1x5la1          56 AVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETG   96 (98)
T ss_dssp             ESSSEEEECSCCTTCEEEECEEEEETTEECCCCCCEEEECC
T ss_pred             CCceEEEECCCCCCCEEEEEEEEEcCCCCcCCCCCEEEEcC
Confidence            35678999999999999999999999999999999999985

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.3e-17  Score=115.95  Aligned_cols=99  Identities=20%  Similarity=0.390  Sum_probs=80.3

Q ss_pred             EEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeee
Q psy535          336 VKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP  414 (460)
Q Consensus       336 ~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (460)
                      +++...+|.+|.++++...+ ++|.|+|.+|.++++++.+|.|+|+......                        .+..
T Consensus         4 f~T~~~~P~~P~~~~~~~~~~~sv~l~W~pp~~~~~~i~~Y~i~~~~~~~~~------------------------~~~~   59 (105)
T d1x3da1           4 FTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNG------------------------EFCQ   59 (105)
T ss_dssp             CCCCCSCCCCCCCCEEEEEETTEEEEECCCCCCCSSCEEEEEEEECTTTSSS------------------------CCEE
T ss_pred             EECCCCCCcCCCCCEEEEccCCEEEEEEECCCCCcCccEEEEEEEecCCCcc------------------------eeEE
Confidence            45667779999999998877 5999999999888889999999998644311                        0111


Q ss_pred             eccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          415 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       415 ~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                        ......+.+.+.+|.|++.|.|||+|.|..|.|++|+.+.++|.
T Consensus        60 --~~~~~~~~~~~~~L~p~t~Y~frV~A~N~~G~s~~S~~~~~~T~  103 (105)
T d1x3da1          60 --CYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS  103 (105)
T ss_dssp             --EEEESCSEEEEESCCTTCEEEEECCEEESSCBCCCCCCEEEECS
T ss_pred             --EecCCccEEEecCCcCCcEEEEEEEEECCCeEcCCCCcEEEECC
Confidence              11135678999999999999999999999999999999999883

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.6e-16  Score=112.00  Aligned_cols=97  Identities=31%  Similarity=0.499  Sum_probs=79.1

Q ss_pred             cCCCCCCCcceEEEeec-ceEEEEecCCC-CCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeec
Q psy535          339 KGPKPGPPRNVSVTEVN-NGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP  416 (460)
Q Consensus       339 ~~~~P~~p~~~~~~~~~-~~v~l~W~~~~-~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (460)
                      ....|++|.++.+...+ ++|.|+|.+|. +.++++.+|.|+|+..+.                         ..|....
T Consensus         7 ~~~~P~~P~~l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~-------------------------~~~~~~~   61 (107)
T d1x5fa1           7 TGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGI-------------------------ARERVEN   61 (107)
T ss_dssp             CCCCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTC-------------------------CCCEEEE
T ss_pred             CCCCCcCCCccEEEEecCCEEEEEEECCccCCCCceEEEEEEEEeCCC-------------------------CceEEEE
Confidence            34568999999999887 58999999885 447789999999997543                         1122222


Q ss_pred             cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ......+++.|.+|.|++.|.|||+|.|..|.|++|..+.++|+
T Consensus        62 ~~~~~~~~~~~~~L~p~t~Y~~rV~A~n~~G~g~~S~~i~v~T~  105 (107)
T d1x5fa1          62 TSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQ  105 (107)
T ss_dssp             CSSTTCSEEEECSCCTTCEEEEEEEEECSSCEEEECCCEEEECC
T ss_pred             EeCCCccEEEecCCCCCCEEEEEEEEEeCCCCcCCCCCEEEECC
Confidence            33456789999999999999999999999999999999999985

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.7e-16  Score=111.81  Aligned_cols=95  Identities=24%  Similarity=0.379  Sum_probs=73.5

Q ss_pred             CCCCCcceEEEeecceEEEEecCCCCCC-ccceEEEEEEEEcCC--eeeeccccCCCCcccccccceecCceeeeeeccC
Q psy535          342 KPGPPRNVSVTEVNNGFVISWQPPLERA-SLIQYYLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT  418 (460)
Q Consensus       342 ~P~~p~~~~~~~~~~~v~l~W~~~~~~~-~~i~~y~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (460)
                      +|++|..+.+....+++.|.|++|...+ .+|++|.|+|+..+.  |...                       |..+. .
T Consensus         2 vP~~P~~~~~~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~-----------------------~~~~~-~   57 (101)
T d2haza1           2 TPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSK-----------------------WYDAK-E   57 (101)
T ss_dssp             CCCCCEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEE-----------------------EEEHH-H
T ss_pred             cCcCCccCEEEeeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeee-----------------------eeeee-c
Confidence            5888987777665679999999987655 489999999998653  2111                       11111 1


Q ss_pred             CCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          419 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       419 ~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ......+.|.+|.|++.|.|||+|.|.+|.|++|+.+.++|+
T Consensus        58 ~~~~~~~~i~~L~p~t~Y~frV~A~N~~G~g~~S~~~~~~T~   99 (101)
T d2haza1          58 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ   99 (101)
T ss_dssp             HHHHSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECC
T ss_pred             ccceeEEEecCCCCCeEEEEEEEEEeCCcCcCCCCceeEEeC
Confidence            123467999999999999999999999999999999999885

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.4e-16  Score=109.27  Aligned_cols=90  Identities=22%  Similarity=0.275  Sum_probs=73.5

Q ss_pred             CCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCC
Q psy535          343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG  421 (460)
Q Consensus       343 P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (460)
                      |.+|.++++...+ +++.|+|++|...++++.+|.|+|+..+..                         .|...   ...
T Consensus         1 P~~P~~~~v~~~s~~si~l~W~~p~~~~~~i~~Y~v~~~~~~~~-------------------------~~~~~---~~~   52 (93)
T d1x4xa1           1 PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGS-------------------------MQICY---CGP   52 (93)
T ss_dssp             CCCCCCCCCEEEETTEEEEECCCCSCSSSCCCEEEEEEESSTTS-------------------------CCEEE---EES
T ss_pred             CcCCCCCEEEEeCCCeEEEEEEecccCCCeeEEEEEEEccCCCc-------------------------ceEee---cCC
Confidence            5667777777666 699999999988888999999999975431                         11111   135


Q ss_pred             cceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       422 ~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      .+++.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|+
T Consensus        53 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~~~~~Tp   91 (93)
T d1x4xa1          53 GLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTP   91 (93)
T ss_dssp             CSEEEEESCCSSCEEEEEEEEECSSCCCCBCCCEEEECC
T ss_pred             ccEEEEcccceeeEEEEEEEEEECCcCcCCCCcEEEEeC
Confidence            678999999999999999999999999999999999985

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.3e-16  Score=116.43  Aligned_cols=100  Identities=26%  Similarity=0.405  Sum_probs=80.6

Q ss_pred             EEEccCCCC-CCCcceEEEeec-ceEEEEecCCC--CCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCce
Q psy535          335 VVKTKGPKP-GPPRNVSVTEVN-NGFVISWQPPL--ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNK  410 (460)
Q Consensus       335 ~~~~~~~~P-~~p~~~~~~~~~-~~v~l~W~~~~--~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (460)
                      .++|.+.+| .+|.++.+...+ +++.|+|++|.  ..++.+.+|+|+|+..+..                         
T Consensus         3 ~v~T~~~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~-------------------------   57 (119)
T d1x5ha1           3 AVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRK-------------------------   57 (119)
T ss_dssp             CCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEE-------------------------
T ss_pred             EEEcCCCCCCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccc-------------------------
Confidence            456777778 489999998887 58999999874  3467899999999976531                         


Q ss_pred             eeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          411 DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       411 ~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      .+...........++.|.+|.|++.|.|+|+|+|..|.|++|+++.++|
T Consensus        58 ~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~G~~S~~~~~~T  106 (119)
T d1x5ha1          58 SDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAET  106 (119)
T ss_dssp             EEEECCBCCTTCCEEEEECCCSSCEEEEECEEEETTEEEEECCCEEEEC
T ss_pred             cceeeeecCCCccEEEeCCCCCCCEEEEEEEEEcCCcCCCCCCCEEEEe
Confidence            1222223345678999999999999999999999999999999999988

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=5e-16  Score=110.55  Aligned_cols=91  Identities=22%  Similarity=0.438  Sum_probs=71.9

Q ss_pred             CCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeee-ccC
Q psy535          341 PKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI-PVT  418 (460)
Q Consensus       341 ~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  418 (460)
                      .+|.+|.++.+...+ +++.|+|.++.+++.+|.+|.|+|+..+.                        ...|... ...
T Consensus         9 ~pP~~P~~~~v~~~~~~sv~l~W~p~~~~g~~I~~Y~v~~~~~~~------------------------~~~~~~~~~~~   64 (108)
T d1x4za1           9 SPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKK------------------------VGDWILATSAI   64 (108)
T ss_dssp             CCCCCCCCCEEEECCSSEEEEECCCCCCTTSCCCEEEEEEEESSS------------------------CCCCEEEEEEE
T ss_pred             CCCccCCCCEEEEccCCEEEEEEECCCCCCCccEEEEEEEEecCC------------------------CCceEEEEEee
Confidence            358899999988776 59999999888878899999999997542                        0112211 123


Q ss_pred             CCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535          419 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV  455 (460)
Q Consensus       419 ~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~  455 (460)
                      .....++.+.+|.|++.|.|||+|+|.+|.|++|++.
T Consensus        65 ~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~pS  101 (108)
T d1x4za1          65 PPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPS  101 (108)
T ss_dssp             CTTCCEEEEESCCTTCEEEEEEEEEETTEECCCCCCC
T ss_pred             cCCccEEEECCCCCCCEEEEEEEEECCCcCCCCCCCC
Confidence            3567889999999999999999999999999887754

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=8.2e-16  Score=106.06  Aligned_cols=89  Identities=15%  Similarity=0.146  Sum_probs=73.7

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCCC-CCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPPL-ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~~-~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      +|.+|.++++...+ ++|.|+|.+|. ..++.+.+|.|+|+..+......                              
T Consensus         2 ~p~~p~~L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~~~~~------------------------------   51 (94)
T d1x5aa1           2 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQM------------------------------   51 (94)
T ss_dssp             CCCCSCCCCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSCEEEEE------------------------------
T ss_pred             cCCCCCceEEEEcCCCEEEEEEecccCCCCCcEEEEEEEEecCCceEEEe------------------------------
Confidence            48899999999887 69999999885 34567789999999765422111                              


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ...+.++|.+|.|++.|.|+|+|.|..|.|++|+.+.++|.
T Consensus        52 ~~~t~~~i~~L~p~t~Y~~rV~A~n~~G~g~~S~~~~~~T~   92 (94)
T d1x5aa1          52 VLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTS   92 (94)
T ss_dssp             ESSSEEEEESCCSSCEEEEEEEEECSSSCCCCCCCEEEECC
T ss_pred             eccCEEEECCCCCCCEEEEEEEEEcCCcCcCCCCCEEEEeC
Confidence            13578999999999999999999999999999999999883

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.65  E-value=3.5e-16  Score=106.81  Aligned_cols=86  Identities=23%  Similarity=0.322  Sum_probs=72.1

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      |.|...|.+..+.+|+++.|.|.+.|.|.+ .++|+|||.++..  ..++. ..++.|.|.++..+|+|.|+|.|.|..|
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p-~v~W~k~g~~i~~--~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRP-AVRWLRDGQPLAS--QNRIE-VSGGELRFSKLVLEDSGMYQCVAENKHG   77 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCC-EEEEEETTEECCC--CSSEE-EETTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCC-EEEEEEeeccccc--cceee-eeeeeEEEEeecccCCEEEEEEEEeCCC
Confidence            577788888999999999999999999876 7999999999874  33443 4577899999999999999999999999


Q ss_pred             CcceeeEEEE
Q psy535          137 TQGSSGQMEV  146 (460)
Q Consensus       137 ~~~~~~~~~v  146 (460)
                      ....+..|.|
T Consensus        78 ~~~~~~~l~V   87 (89)
T d1cs6a4          78 TVYASAELTV   87 (89)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            8665555444

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-16  Score=113.03  Aligned_cols=99  Identities=24%  Similarity=0.414  Sum_probs=78.2

Q ss_pred             EEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeee
Q psy535          335 VVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWL  413 (460)
Q Consensus       335 ~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (460)
                      .+++.+.+|.+|.++++...+ +++.|+|++|...++.|.+|+|+|+..+.-.                        .|.
T Consensus         3 ~v~T~e~vP~~p~~l~~~~~~~~sv~l~W~~P~~~ng~i~~Y~i~~~~~~~~~------------------------~~~   58 (106)
T d1wfna1           3 LVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTN------------------------TRV   58 (106)
T ss_dssp             SCCSSCCSCCCCSCCEEESCCSSEEEEECCCCTTCCSCCCEEEEEEEESSCGG------------------------GCC
T ss_pred             EEEcCCCCCcCCCCcEEEEecCCEEEEEEECCCCCCCcEEeEEEEEEECCCCc------------------------ceE
Confidence            356777889999999999877 5999999999887889999999998755300                        000


Q ss_pred             eeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEee
Q psy535          414 PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK  458 (460)
Q Consensus       414 ~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~  458 (460)
                       .........++.|.+|.|++.|.|+|+|.|..|.|++|......
T Consensus        59 -~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~~t  102 (106)
T d1wfna1          59 -THYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISS  102 (106)
T ss_dssp             -CEEECSSCCEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             -EEecCCCeeEEEEccCCCCCEEEEEEEEECCCCCcCCcCCEEcc
Confidence             11122456789999999999999999999999999998765543

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.7e-16  Score=111.06  Aligned_cols=100  Identities=31%  Similarity=0.493  Sum_probs=77.1

Q ss_pred             ccCCCC-CCCcceEEEee--c-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeee
Q psy535          338 TKGPKP-GPPRNVSVTEV--N-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWL  413 (460)
Q Consensus       338 ~~~~~P-~~p~~~~~~~~--~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (460)
                      +.+.+| .||.++.+...  + ++|.|+|++|...++++.+|.|+|+..+...                      ...|.
T Consensus         6 T~~~~P~~pP~~~~v~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~----------------------~~~~~   63 (111)
T d1x5ka1           6 TFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAE----------------------IHDWV   63 (111)
T ss_dssp             SCCCCCCSCCEEEEEEECSSCTTCEEEEEECCSCCSSCCCEEEEEEESCSSSC----------------------TTTSE
T ss_pred             eCCCCCCCCCCCcEEEEecCCCCEEEEEEEccccCCCceeeeEEeeeecCCCC----------------------cceeE
Confidence            344456 58888887654  3 4899999999888899999999998654300                      01111


Q ss_pred             eeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          414 PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       414 ~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      .. ......+++.|.+|.|++.|.|+|+|.|..|.|++|+.+.++|+
T Consensus        64 ~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~T~  109 (111)
T d1x5ka1          64 IE-PVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTP  109 (111)
T ss_dssp             EE-EESTTCSEEEECSCCSSSEEEEEEEEECSSCBCCCCCCEEEECC
T ss_pred             EE-EeCCCeeEEEECCCCCCCEEEEEEEEEcCCCCcCCCCCEEEECC
Confidence            11 12356778999999999999999999999999999999999985

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=4.6e-16  Score=107.12  Aligned_cols=90  Identities=16%  Similarity=0.247  Sum_probs=76.3

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      +.|...|....+.+|+++.|.|.+.|.|.+ .++|++++..+......++....+++|.|.++..+|+|.|+|.|.|..+
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p-~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR   80 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCC-EEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCC-eEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcC
Confidence            456678888999999999999999998876 8999999999987666777777788999999999999999999999777


Q ss_pred             CcceeeEEEEE
Q psy535          137 TQGSSGQMEVL  147 (460)
Q Consensus       137 ~~~~~~~~~v~  147 (460)
                      .......+.|.
T Consensus        81 ~~~~~~~i~Vi   91 (92)
T d1epfa2          81 GEINFKDIQVI   91 (92)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            65555555554

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.8e-16  Score=112.09  Aligned_cols=97  Identities=24%  Similarity=0.406  Sum_probs=78.0

Q ss_pred             EEEccCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeee
Q psy535          335 VVKTKGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWL  413 (460)
Q Consensus       335 ~~~~~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (460)
                      .+.+...+|.+|.++++...+ ++|.|+|++|.  ++.+.+|.|+|+..+.+....                        
T Consensus         3 ~v~T~~~vP~~P~~~~~~~~~~~si~l~W~~p~--~~~i~~Y~i~y~~~~~~~~~~------------------------   56 (102)
T d1x5za1           3 QVITQTGVPGQPLNFKAEPESETSILLSWTPPR--SDTIANYELVYKDGEHGEEQR------------------------   56 (102)
T ss_dssp             CCCCCSCCCCCCEEEEEECSSSSEEEEEEECCS--CCCCCEEEECBEESSSCCCBC------------------------
T ss_pred             EEECCCCCCcCCCCeEEEEccCCEEEEEEECCC--CCCccceEEEEEeCCCCceEE------------------------
Confidence            456667789999999999887 59999999985  457899999999765421110                        


Q ss_pred             eeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          414 PIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       414 ~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                       .  .....++|.|.+|.|++.|.|+|.|+|..|.|++|..+.++|.
T Consensus        57 -~--~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~T~  100 (102)
T d1x5za1          57 -I--TIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTM  100 (102)
T ss_dssp             -C--EECSSSEEEEECCCTTCEEEECEEEECSSCEEEECCCEEEECC
T ss_pred             -E--EcCCcCEEEECCCCCCCEEEEEEEEEcCCCEeCCCCCEEEEcC
Confidence             0  0124568999999999999999999999999999999999984

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.2e-15  Score=108.10  Aligned_cols=95  Identities=20%  Similarity=0.300  Sum_probs=76.6

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      .|++|.++++...+ +++.|+|++|.+.++++.+|.|+|+......                    .....|........
T Consensus         2 ~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~--------------------~~~~~~~~~~~~~~   61 (103)
T d1qg3a2           2 VPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDN--------------------RPIGPMKKVLVDNP   61 (103)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCSCCSSCCCEEEEEEEEBCTTS--------------------CBCSCCEEEEECCT
T ss_pred             cCccCCCcEEEEecCCEEEEEEEECccCCCCceEEEEEeecccccc--------------------ccccceEEEEecCC
Confidence            58999999999887 6999999999988999999999998754311                    11222333444446


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCCCCCCceeE
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV  456 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~  456 (460)
                      ...+++|.+|+|++.|.|+|+|+|.+|.|+++..+.
T Consensus        62 ~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~v   97 (103)
T d1qg3a2          62 KNRMLLIENLRESQPYRYTVKARNGAGWGPEREAII   97 (103)
T ss_dssp             TCCEEEECCCCTTCCEEEEEEEEETTEECCCEEEEE
T ss_pred             CceEEEEeecCCCCEEEEEEEEEcCCccCCCccccc
Confidence            678999999999999999999999999999887553

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.3e-16  Score=109.46  Aligned_cols=99  Identities=25%  Similarity=0.470  Sum_probs=75.5

Q ss_pred             EEccCCCCCCCcceEE-Eeec-ceEEEEecCCCCC-CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceee
Q psy535          336 VKTKGPKPGPPRNVSV-TEVN-NGFVISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDW  412 (460)
Q Consensus       336 ~~~~~~~P~~p~~~~~-~~~~-~~v~l~W~~~~~~-~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (460)
                      +++.+.+|++|..+.. .... +++.|+|++|... +.++.+|.++|+..+..                        ..|
T Consensus         4 ~~T~~~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~------------------------~~~   59 (107)
T d2crma1           4 FTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG------------------------NKW   59 (107)
T ss_dssp             CCSCCCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSS------------------------CCC
T ss_pred             EECCCCCCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCC------------------------CcE
Confidence            4566677888888554 3444 6999999988655 45899999999865420                        011


Q ss_pred             eeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          413 LPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       413 ~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ....  ....+.+.+.+|+|++.|.|||+|.|..|.|++|+.+.++|+
T Consensus        60 ~~~~--~~~~~~~~i~~L~p~t~Y~~rV~A~n~~G~s~~S~~v~v~Tp  105 (107)
T d2crma1          60 EMIY--SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTP  105 (107)
T ss_dssp             EEEE--CSSCSEEEECSCCTTSCEEEEEEEEETTEECCCCCCCCCCCC
T ss_pred             EEee--cCCccEEEEeccCCCCEEEEEEEEECCCcCcCCCCcEEEECC
Confidence            1111  235678999999999999999999999999999999999885

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8e-16  Score=111.52  Aligned_cols=95  Identities=29%  Similarity=0.442  Sum_probs=75.2

Q ss_pred             CCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          341 PKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       341 ~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      ..|.+|.++.+...+ ++|.|+|+++.+++.++.+|.|+|+..+.                        ...|..+... 
T Consensus        14 ~~P~pP~~~~v~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~------------------------~~~~~~~~~~-   68 (117)
T d1uema_          14 DLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSV------------------------SNSWQTVANH-   68 (117)
T ss_dssp             CSCBCCCCCEEEEECSSCEEEECCCCBCSSSCCCEEEEEEEETTT------------------------EEEEEEEEEE-
T ss_pred             ccCcCCCCCEEEEccCCEEEEEEECCCcCCCCeEEEEEEEeccCC------------------------ceeeEEeccc-
Confidence            458999999998876 69999999988878899999999987543                        1223332211 


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeE-eecC
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV-VKTK  460 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~-~~T~  460 (460)
                      ...+.|+|.+|.|++.|.|+|+|+|..|.|++|+... ++|+
T Consensus        69 ~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~~s~~v~t~  110 (117)
T d1uema_          69 VKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ  110 (117)
T ss_dssp             ECSSEEEECSCCTTCEEEEEEEEEETTEEEEECCCCCCEECC
T ss_pred             cccccceECCCCCCCEEEEEEEEEeCCcCCCCcCCCcCEEeC
Confidence            2457899999999999999999999999999988753 5664

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.2e-16  Score=111.05  Aligned_cols=101  Identities=18%  Similarity=0.289  Sum_probs=76.4

Q ss_pred             cCCCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535          339 KGPKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV  417 (460)
Q Consensus       339 ~~~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (460)
                      ...+|++|.++++...+ +++.|+|++|.++++++.+|.|+|+........                   ....+. ...
T Consensus         7 p~~~P~~P~~~~~~~~~~~sv~l~W~pp~~~~~~i~~y~v~~~~~~~~~~~-------------------~~~~~~-~~~   66 (111)
T d1wisa1           7 PPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGE-------------------EWLLIH-QLS   66 (111)
T ss_dssp             CCCCCCCCEEEEEESCCSSCEEEEEECCCCCSSCCSEEEEEECBSCCSTTS-------------------CCEEEE-EEE
T ss_pred             CCCCCcCCCCCEEEEcCCCEEEEEEeCCCCCCCceeEEEEeeeecccCCCc-------------------ceeeee-eee
Confidence            34568999999998776 699999999988889999999999864420000                   000111 112


Q ss_pred             CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee-Eeec
Q psy535          418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV-VVKT  459 (460)
Q Consensus       418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~-~~~T  459 (460)
                      .....+++.|.+|.|++.|.|||+|.|.+|.|++|++. .++|
T Consensus        67 ~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~~s~~~~T  109 (111)
T d1wisa1          67 NEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT  109 (111)
T ss_dssp             SCTTCSEEEECSCCTTSEECCCCEEECSSCBCCCCCCCCCEEC
T ss_pred             cccceeEEEeCCCCCCCEEEEEEEEEcCCcCCCCcCCCCCEEc
Confidence            33567789999999999999999999999999999874 4666

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.62  E-value=1.1e-15  Score=106.75  Aligned_cols=90  Identities=13%  Similarity=0.106  Sum_probs=72.8

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC--eEEEeecCCCCCeEEEEEEEc
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      +|.|...+....+.+|+.+.|.|.+.|.|.+ .++|+||+.++............++  +|.|.++..+|+|.|+|.|.|
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p-~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDP-ECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCC-eEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            5677788888899999999999999998876 7999999999975433333333333  699999999999999999999


Q ss_pred             CCCCcceeeEEEE
Q psy535          134 AHGTQGSSGQMEV  146 (460)
Q Consensus       134 ~~g~~~~~~~~~v  146 (460)
                      ..|....+..|.|
T Consensus        83 ~~G~~~~~~~L~V   95 (98)
T d1g1ca_          83 IAGETSSHAFLLV   95 (98)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEE
Confidence            9998766655554

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.1e-16  Score=107.57  Aligned_cols=92  Identities=20%  Similarity=0.310  Sum_probs=73.3

Q ss_pred             CCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCC
Q psy535          343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG  421 (460)
Q Consensus       343 P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (460)
                      |.+|..+.+...+ ++|.|+|++|...++++.+|.|+|+..+....                       .+.   .....
T Consensus         1 P~~~~~l~~~~~t~~si~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~-----------------------~~~---~~~~~   54 (95)
T d2djsa1           1 PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEF-----------------------NSS---MARSQ   54 (95)
T ss_dssp             CCCCSCCEEEEECSSEEEEECCCCSCCSSCEEEEEEEEEETTSCST-----------------------TCE---EEEES
T ss_pred             CCCCCccEEEeecCCEEEEEEEECCCCCcceEEeeeeeeeeccCcc-----------------------eeE---eecCC
Confidence            5566678887776 69999999998888999999999997653100                       000   01135


Q ss_pred             cceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       422 ~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ...+.|.+|.|++.|.|+|+|.|..|.|++|+.+.++|.
T Consensus        55 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~   93 (95)
T d2djsa1          55 TNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTL   93 (95)
T ss_dssp             SSEEEEESCCTTCEEEEEEEEEESSCEEEECCCEEEECC
T ss_pred             ccEEEEeecCCccEEEEEEEEEcCCCCCCCCCCEEEEeC
Confidence            678999999999999999999999999999999999884

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.5e-15  Score=105.56  Aligned_cols=91  Identities=23%  Similarity=0.385  Sum_probs=67.8

Q ss_pred             CCCCcceEEEe--ecceEEEEecCCCCCC-ccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          343 PGPPRNVSVTE--VNNGFVISWQPPLERA-SLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       343 P~~p~~~~~~~--~~~~v~l~W~~~~~~~-~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      |+|+....+..  ..++|.|+|++|...+ .+|.+|.|+|+..+.                         ..|..+.  .
T Consensus         2 P~p~~pp~~~~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~-------------------------~~~~~~~--~   54 (97)
T d2crza1           2 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEK-------------------------DEPREVY--Q   54 (97)
T ss_dssp             CCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTS-------------------------CCCEEEE--E
T ss_pred             cCcCCCCEEeeeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcC-------------------------CceeEee--c
Confidence            44444444432  2369999999887554 489999999997543                         1122221  1


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ...++++|.+|.|++.|.|||+|.|..|.|++|+.+.++|.
T Consensus        55 ~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~~~~~~T~   95 (97)
T d2crza1          55 GSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA   95 (97)
T ss_dssp             ESCSEEEEESCCTTCEEEECCEEECSSCBCCCCCCEEEECC
T ss_pred             CCceEEEEcCCCCCEEEEEEEEEecCCeEcCCcCCCeEEeC
Confidence            34678999999999999999999999999999999998874

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.4e-15  Score=105.26  Aligned_cols=89  Identities=22%  Similarity=0.422  Sum_probs=71.6

Q ss_pred             CCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCC
Q psy535          343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG  421 (460)
Q Consensus       343 P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (460)
                      .++|.++.+...+ ++|.|+|++|   .+.+.+|.|+|+..+.-.                       ....   .....
T Consensus         2 l~aP~n~~~~~~s~~si~l~W~~p---~~~~~~Y~i~y~~~~~~~-----------------------~~~~---~~~~~   52 (92)
T d1qg3a1           2 LGAPQNPNAKAAGSRKIHFNWLPP---SGKPMGYRVKYWIQGDSE-----------------------SEAH---LLDSK   52 (92)
T ss_dssp             CCCCEEEEEEECSTTCEEEEEECC---SSCCCEEEEEEEETTSCG-----------------------GGCE---EEEES
T ss_pred             CCcCCCCEEEEccCCEEEEEEEec---CCCccceEEeeeeccccc-----------------------cEEE---EecCC
Confidence            3689999999877 5999999998   456889999999765300                       0000   01235


Q ss_pred             cceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       422 ~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ...+.|.+|.|++.|.|+|+|+|..|.|++|+++.++|+
T Consensus        53 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~   91 (92)
T d1qg3a1          53 VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTH   91 (92)
T ss_dssp             SSEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEEECC
T ss_pred             ccEEEECCCCCCcEEEEEEEEEeCCcCcCCCCCEEEEcC
Confidence            678999999999999999999999999999999999996

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1e-15  Score=110.99  Aligned_cols=105  Identities=24%  Similarity=0.321  Sum_probs=79.8

Q ss_pred             CCCCCCCcEEEEccCCCCC-CCcceEEEeecceEEEEecCC--CCCCccceEEEEEEEEcCCeeeeccccCCCCcccccc
Q psy535          326 GDGMLSNIVVVKTKGPKPG-PPRNVSVTEVNNGFVISWQPP--LERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLG  402 (460)
Q Consensus       326 G~~~~s~~~~~~~~~~~P~-~p~~~~~~~~~~~v~l~W~~~--~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~  402 (460)
                      |.+..|..+.++++..+|. ||.++......++|.|+|+++  ...++.+.+|+|+|+..+...                
T Consensus         1 G~s~~S~~v~v~T~~~~P~~pp~~~~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~----------------   64 (117)
T d1wj3a_           1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNN----------------   64 (117)
T ss_dssp             CCCCCCCCCCCCCSCCCCCCCCCSCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSS----------------
T ss_pred             CcCCCCCCEEEEcCCCCcCCCCcceEEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCc----------------
Confidence            6678899999999998886 555554444446999999974  345789999999999765310                


Q ss_pred             cceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          403 EYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                               |...    .....+.+.+|.+++.|.|+|+|+|..|.|++|+++.+.+
T Consensus        65 ---------~~~~----~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~G~~S~~v~v~~  108 (117)
T d1wj3a_          65 ---------VQVL----NTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPR  108 (117)
T ss_dssp             ---------CEEE----EESSSEEEEECCCSSCEEEEEEEEESSCCCCBCCCEEECC
T ss_pred             ---------eeee----eceeeEEEeeccCCcEEEEEEEEEcCCccCCCCCCEEEec
Confidence                     1101    1235677889999999999999999999999999887643

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.61  E-value=4.6e-16  Score=107.99  Aligned_cols=91  Identities=20%  Similarity=0.296  Sum_probs=73.6

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      .|.|...|....+.+|+++.|.|.+.|.|.+..+.|+++|..+............+++|.|.++..+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   81 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA   81 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCC
Confidence            46777788889999999999999999998776799999999986544444444456789999999999999999999999


Q ss_pred             CCcceeeEEEEE
Q psy535          136 GTQGSSGQMEVL  147 (460)
Q Consensus       136 g~~~~~~~~~v~  147 (460)
                      |... +..+.|.
T Consensus        82 G~~~-s~~v~l~   92 (94)
T d1biha1          82 GVAS-SRVISFR   92 (94)
T ss_dssp             EEEE-CCCEEEE
T ss_pred             CEEE-EEEEEEE
Confidence            8653 3344443

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=4e-16  Score=114.33  Aligned_cols=111  Identities=21%  Similarity=0.246  Sum_probs=77.2

Q ss_pred             CCCCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          340 GPKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       340 ~~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      ...|.+|.++++....++|.|+|++|.+.+++|++|.|+|+..+.......       ..........+.....   ...
T Consensus         5 ~~~P~aP~~v~v~~~~~si~l~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---~~~   74 (123)
T d1wfta_           5 SSGPGAPSTVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNP-------SQLVFMRIYCGLKTSC---TVT   74 (123)
T ss_dssp             SSCCCCCEEEEEEECSSEEEEEEECCSSCCSSCCCEEEEEEECSSCCCSCS-------CCCEEEEEEEESCSEE---EEE
T ss_pred             CCCCcCCcccEEEeCCCEEEEEecCchhcCCceEEEEEEEEECCCCCcccc-------ceeeeEEEecCCceeE---eec
Confidence            346899999999876679999999998888999999999997653111000       0000000000110111   111


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      .....+.|.+|.|++.|.|||+|.|..|.|++|+...++|.
T Consensus        75 ~~~~~~~i~~L~p~t~Y~frV~A~N~~G~Gp~S~~~~~~t~  115 (123)
T d1wfta_          75 AGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGN  115 (123)
T ss_dssp             HHHHTTCCCBCSSSCEEEEEEEEBSSSSBCCCEEEEEECCS
T ss_pred             CCccEEEEcCCCCCCEEEEEEEEecCCcCCCCCCcEEEEec
Confidence            23456788999999999999999999999999999888873

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.60  E-value=8.8e-16  Score=107.11  Aligned_cols=88  Identities=25%  Similarity=0.328  Sum_probs=71.1

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEc
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      |.|...|....+.+|+++.|.|.+.|.|.+ .|+|++++..+....  ++....++   .|.|.++..+|+|.|+|.|.|
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p-~v~W~~~~~~l~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   78 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSPP-VVTWHKDDRELKQSV--KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN   78 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSCC-EEEEEETTEECCSBT--TBBCCCSTTEEEEEESCCCSGGGSCEEEEEEE
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCCC-EEEEEEeeeccceee--EEEEEecCCeeEEEeCCCceecCEEEEEEEEE
Confidence            678888988999999999999999998876 799999999987432  22222222   599999999999999999999


Q ss_pred             CCCCcceeeEEEEE
Q psy535          134 AHGTQGSSGQMEVL  147 (460)
Q Consensus       134 ~~g~~~~~~~~~v~  147 (460)
                      ..|.......+.|.
T Consensus        79 ~~G~~~~~~~l~V~   92 (97)
T d1koaa1          79 SYGTKEEIVFLNVT   92 (97)
T ss_dssp             TTEEEEEEECCEEE
T ss_pred             CCCEEEEEEEEEEe
Confidence            99987665555553

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.9e-15  Score=104.88  Aligned_cols=90  Identities=24%  Similarity=0.321  Sum_probs=69.2

Q ss_pred             CCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535          343 PGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS  422 (460)
Q Consensus       343 P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (460)
                      |++|..+......+++.|+|++|.+.++++.+|.|+|+..+..                         .|... ......
T Consensus         1 P~~P~~~~~~~~~~sv~l~W~pP~~~~g~i~~Y~i~~~~~~~~-------------------------~~~~~-~~~~~~   54 (94)
T d2dn7a1           1 PGRPTMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEA-------------------------RPNTI-DFGKDD   54 (94)
T ss_dssp             CCCCEEEEEECSTTEEEEEEECCSSCSSCCCEEEEEEEETTCS-------------------------SCEEE-EEETTC
T ss_pred             CCCCcEeEEEEeCCEEEEEEeCCCCCCCceEEEEEEEEEcCCC-------------------------CcEEE-EcCCCc
Confidence            6777755555445799999999988888999999999986531                         11111 112466


Q ss_pred             ceEEECCCCcCceEEEEEEEeecCCCCCCCceeEee
Q psy535          423 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVK  458 (460)
Q Consensus       423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~  458 (460)
                      +++.|.+|.|++.|.|+|+|.|..|.|++|+.....
T Consensus        55 ~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~~T   90 (94)
T d2dn7a1          55 QHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRT   90 (94)
T ss_dssp             CEEEEECCCTTCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             cEEEEEccCCeeEEEEEEEEEcCCcCCCCccEEEee
Confidence            789999999999999999999999999988765443

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.5e-15  Score=100.33  Aligned_cols=83  Identities=14%  Similarity=0.201  Sum_probs=67.0

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      |.|...|....+.+|+++.|.|.+.|.|.|..|+|+|||..+....        .+.+.|.....+|+|.|+|.|.|..|
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~--------~~~~~l~~~~~~d~G~Y~C~A~N~~G   73 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA--------PSPSVLNVTGVTQSTMFSCEAHNLKG   73 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE--------ESSEEEEECCCSSCEEEEEEEEETTE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC--------CcceEEecCCccccEEEEEEEEcCCC
Confidence            6788889999999999999999999998765799999999986421        23466777788899999999999998


Q ss_pred             CcceeeEEEEEe
Q psy535          137 TQGSSGQMEVLV  148 (460)
Q Consensus       137 ~~~~~~~~~v~v  148 (460)
                      .. .+..++|.|
T Consensus        74 ~~-~S~~~~v~V   84 (85)
T d1rhfa2          74 LA-SSRTATVHL   84 (85)
T ss_dssp             EE-ECCCEEEEE
T ss_pred             cE-EEEEEEEEE
Confidence            64 444555554

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.60  E-value=2e-15  Score=106.35  Aligned_cols=90  Identities=20%  Similarity=0.252  Sum_probs=72.0

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec--CeEEEeecCCCCCeEEEEEEEc
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN--GSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      +|.|...|....+.+|+++.|.|.+.|.|.+ .+.|++||..+.......+.....  .+|.|.++..+|+|.|+|.|.|
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p-~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDP-EVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCC-eEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            5777778888889999999999999998876 799999999997543333333222  3699999999999999999999


Q ss_pred             CCCCcceeeEEEE
Q psy535          134 AHGTQGSSGQMEV  146 (460)
Q Consensus       134 ~~g~~~~~~~~~v  146 (460)
                      ..|....+..|.|
T Consensus        87 ~~G~~~~~~~L~V   99 (102)
T d1fhga_          87 SLGEATCTAELLV   99 (102)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEE
Confidence            9998765555444

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=2.6e-15  Score=105.87  Aligned_cols=96  Identities=23%  Similarity=0.328  Sum_probs=74.8

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCC--CCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccC
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPP--LERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT  418 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~--~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (460)
                      ++.+|.++.+...+ ++|.|+|+++  ...++++.+|.|+|+..+.-.                      ...|... ..
T Consensus         1 P~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~----------------------~~~~~~~-~~   57 (101)
T d1x4ya1           1 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDN----------------------DSDYKKD-MV   57 (101)
T ss_dssp             CCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCS----------------------GGGCCCE-EE
T ss_pred             CCCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeecccee----------------------eeeeeEE-EE
Confidence            36799999999887 5999999865  344679999999999754200                      0001111 11


Q ss_pred             CCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          419 PPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       419 ~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ......+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|+
T Consensus        58 ~~~~~~~~i~~L~p~t~Y~~~v~a~n~~G~s~~S~~~~~~T~   99 (101)
T d1x4ya1          58 EGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETK   99 (101)
T ss_dssp             ETTCCEEEECSCCTTCEEEEEEEEECTTCCCCCCCCEEEECC
T ss_pred             cCCeeEEEEcCCCCCCEEEEEEEEEcCCCCCCCCCcEEEEcc
Confidence            245678999999999999999999999999999999999996

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.5e-16  Score=110.21  Aligned_cols=93  Identities=24%  Similarity=0.415  Sum_probs=76.3

Q ss_pred             CCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          342 KPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       342 ~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      .|.||.++.+....++|.|+|++|.+.++++.+|.|+|+..+. |....                          .....
T Consensus         7 ~~sPP~~~~~~~t~~si~l~W~pp~~~~~~i~~Y~v~~~~~~~~~~~~~--------------------------~~~~~   60 (108)
T d1v5ja_           7 GLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLD--------------------------PAVAG   60 (108)
T ss_dssp             CCCCCEEEEEEECSSSEEEEEECCSCCSSCCCBEEEEEEETTCCCEEEE--------------------------EEECS
T ss_pred             CCCcCCCeEEEEcCCEEEEEEEecccCCCceeEEEEEeeeeeeeeeecc--------------------------ccccc
Confidence            4789999988765679999999998878899999999997543 32221                          12234


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ..+.+.|.+|.|++.|.|||+|+|..|.|++|+.+.++|.
T Consensus        61 ~~~~~~i~~L~p~t~Y~~rV~A~n~~g~s~~S~~~~~~T~  100 (108)
T d1v5ja_          61 TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTS  100 (108)
T ss_dssp             SCCEEECCCCCTTSCEECCBEEEETTEEEEECSCCCCCCS
T ss_pred             eeeeEEEEeccCCcEEEEEEEEEeCCCEeCCcCceEEECC
Confidence            6788999999999999999999999999999999888774

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.59  E-value=2.4e-15  Score=102.66  Aligned_cols=85  Identities=20%  Similarity=0.375  Sum_probs=68.0

Q ss_pred             CCeeEEcce-eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           56 PAKVTFTPT-VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        56 ~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      +|.|...|. ...+.+|+++.|.|.+.|.|++ .|+|+++|.++..   .++.. .++.|.|.++...|+|.|+|.|.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p-~v~W~~~~~~i~~---~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP-NVVWSHNAKPLSG---GRATV-TDSGLVIKGVKNGDKGYYGCRATNE   76 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCC-CCEEEETTEECCS---SSEEE-ETTEEEESSCCSTTCEEEEEEEEET
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCC-EEEEEeCCccCcc---ccEEE-eeeeEEECCCChhhCEEEEEEEEEC
Confidence            466766664 4567899999999999999876 7999999999853   34443 4567999999999999999999999


Q ss_pred             CCCcceeeEEE
Q psy535          135 HGTQGSSGQME  145 (460)
Q Consensus       135 ~g~~~~~~~~~  145 (460)
                      .|.......+.
T Consensus        77 ~G~~~~~~~l~   87 (89)
T d1biha4          77 HGDKYFETLVQ   87 (89)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CCEEEEEEEEE
Confidence            99865554443

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.1e-15  Score=104.46  Aligned_cols=93  Identities=18%  Similarity=0.223  Sum_probs=71.6

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC-eEEEeecCCCCCeEEEEEEEcCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG-SLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      |.|...|....+.+|+++.|.|.+.|.|.+ .++|+|++..+......++....+. +|.|.++..+|+|.|+|.|.|..
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p-~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   79 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPI-TCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKL   79 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSC-EEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSS
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCC-EEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECC
Confidence            455567788889999999999999998876 7999999999875333333222222 59999999999999999999999


Q ss_pred             CCcceeeEEEEEeeCCC
Q psy535          136 GTQGSSGQMEVLVRKPP  152 (460)
Q Consensus       136 g~~~~~~~~~v~v~~~p  152 (460)
                      |....+.  .|.|..+|
T Consensus        80 G~~~~~~--~l~V~~~P   94 (101)
T d2cqva1          80 GSRQAQV--NLTVVDKP   94 (101)
T ss_dssp             CEEECCE--EEEEECSC
T ss_pred             CEEEEEE--EEEEEecC
Confidence            9865554  45555555

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.9e-15  Score=106.81  Aligned_cols=101  Identities=25%  Similarity=0.414  Sum_probs=76.9

Q ss_pred             ccCCCC-CCCcceEEEeec-ceEEEEecCCCC--CCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeee
Q psy535          338 TKGPKP-GPPRNVSVTEVN-NGFVISWQPPLE--RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWL  413 (460)
Q Consensus       338 ~~~~~P-~~p~~~~~~~~~-~~v~l~W~~~~~--~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (460)
                      +.+.+| .||.++.+...+ +++.|+|++|..  .++++.+|.|+|+..+.-.                      ...|.
T Consensus         3 T~~~~P~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~----------------------~~~~~   60 (109)
T d1va9a1           3 TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGS----------------------NGQYS   60 (109)
T ss_dssp             SSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTS----------------------CCSCB
T ss_pred             CcCCCCCCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccc----------------------cceee
Confidence            445556 689999998777 599999998754  3679999999999765300                      00011


Q ss_pred             ee-ccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          414 PI-PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       414 ~~-~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      .. .........+.|.+|.|++.|.|+|+|.|..|.|++|.++.++|.
T Consensus        61 ~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~g~~S~~v~~~T~  108 (109)
T d1va9a1          61 IVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTL  108 (109)
T ss_dssp             CCBCCCCSSEEEEEEESCCSSCCEEEEEEEEETTEECCCCCCEECCCC
T ss_pred             eeEEecCCCeeEEEECCCCcceEEEEEEEEEcCCcCCCCCCCEEEEcC
Confidence            11 112245678999999999999999999999999999999999884

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2e-15  Score=105.52  Aligned_cols=92  Identities=20%  Similarity=0.261  Sum_probs=71.5

Q ss_pred             CCCCcceEEEeec-ceEEEEecCCCCCC-ccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          343 PGPPRNVSVTEVN-NGFVISWQPPLERA-SLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       343 P~~p~~~~~~~~~-~~v~l~W~~~~~~~-~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      |.+|.++++...+ ++|.|+|++|...+ ..+.+|.++++..+...                         |... ....
T Consensus         1 P~~P~~~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~~-------------------------~~~~-~~~~   54 (96)
T d1x5xa1           1 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGY-------------------------GFKP-KYDG   54 (96)
T ss_dssp             CCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSC-------------------------CCEE-EEEE
T ss_pred             CccCCCCEEEEecCCEEEEEEEeecccCcceEeeeEEEeeecccee-------------------------eeEE-eecC
Confidence            6778888888776 69999999986554 57889999888654300                         0000 1113


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ..++++|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.
T Consensus        55 ~~~~~~v~~L~p~t~Y~~rV~A~n~~G~s~~S~~~~~~T~   94 (96)
T d1x5xa1          55 EDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTC   94 (96)
T ss_dssp             SCSEEEEESCCSSCEEEEEEEEECSSCEEEECCCEEEECC
T ss_pred             CCCEEEECCCCCCCEEEEEEEEEcCCcEeCCCCCEEEEeC
Confidence            5678999999999999999999999999999999999884

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.58  E-value=7.8e-15  Score=103.96  Aligned_cols=90  Identities=23%  Similarity=0.304  Sum_probs=71.5

Q ss_pred             CCCCcceEEEeec-ceEEEEecCCC--CCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          343 PGPPRNVSVTEVN-NGFVISWQPPL--ERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       343 P~~p~~~~~~~~~-~~v~l~W~~~~--~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      +.+|.++++...+ ++|.|+|+++.  ..++++.+|.|+|+..+.                        ...|.......
T Consensus         5 ~~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~------------------------~~~~~~~~~~~   60 (105)
T d1cfba2           5 FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIP------------------------AAAWENNNIFD   60 (105)
T ss_dssp             SCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESST------------------------TCCCEEEEECC
T ss_pred             CCCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeecc------------------------ccceeEEEecC
Confidence            3689999999877 59999999754  457899999999997543                        11233333344


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeE
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV  456 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~  456 (460)
                      ...+++.|.+|.+++.|.|+|+|+|..|.|++|....
T Consensus        61 ~~~~~~~i~~L~p~t~Y~~~V~A~N~~G~gp~S~~~v   97 (105)
T d1cfba2          61 WRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEV   97 (105)
T ss_dssp             TTCCEEEECSCCSSCEEEEEEEEEETTEECSSCCCCE
T ss_pred             CCccEEEECCCCCCCEEEEEEEEEeCCcCCCCCCCcE
Confidence            5678999999999999999999999999999987643

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=4.5e-15  Score=103.18  Aligned_cols=87  Identities=21%  Similarity=0.350  Sum_probs=67.7

Q ss_pred             CCCCcceEEEeec-ceEEEEecCCCC-CCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          343 PGPPRNVSVTEVN-NGFVISWQPPLE-RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       343 P~~p~~~~~~~~~-~~v~l~W~~~~~-~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      +.+|.++++...+ ++|.|+|++|.. .++.|.+|+|+|+..+.                        ...|........
T Consensus         7 ~~~P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~------------------------~~~~~~~~~~~~   62 (95)
T d2ibga1           7 MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSS------------------------AGEYFKATIEGA   62 (95)
T ss_dssp             CCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTC------------------------CSCCEEEEEECT
T ss_pred             CCCCcCeEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeee------------------------cceeeeeeccCC
Confidence            4578889888877 699999997754 46689999999997542                        011222222335


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCCCCCCc
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSN  453 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~  453 (460)
                      ..+++.|.+|.|++.|.|+|+|+|..|.|++|.
T Consensus        63 ~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~Ss   95 (95)
T d2ibga1          63 HARSFKIAPLETATMYEFKLQSFSAASASEFSA   95 (95)
T ss_dssp             TCCEEEECSCCTTCEEEEEEEEECSSCBCCCCC
T ss_pred             ceeEEEEeeccCCeEEEEEEEEEeCCccCCCCC
Confidence            678999999999999999999999999999883

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.4e-15  Score=104.46  Aligned_cols=90  Identities=22%  Similarity=0.352  Sum_probs=70.1

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCCCCC-CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~-~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      +|.||.++.+...+ ++|.|+|++|... +.++.+|.++++..+.                         ..|..+....
T Consensus         2 Pp~pP~~p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~-------------------------~~~~~~~~~~   56 (104)
T d1bpva_           2 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPN-------------------------GRWLKANFSN   56 (104)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTS-------------------------CCCEECCCSC
T ss_pred             CCCCCCCCEEEEecCCEEEEEEEeccccCcceEEEEEEEeecccc-------------------------cceeEEEeec
Confidence            47888888888776 6999999988654 4589999999997543                         1233333334


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCC-CCCCceeE
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGD-GMLSNIVV  456 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~-s~~s~~~~  456 (460)
                      .....+++.+|.|++.|.|||+|+|..|. |++|....
T Consensus        57 ~~~~~~~i~~L~p~t~Y~frV~A~n~~G~~s~~S~~s~   94 (104)
T d1bpva_          57 ILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSD   94 (104)
T ss_dssp             CCSSEEEECSCCSSCCEEEEEEEECTTSCEEEEEEEEE
T ss_pred             cceeEEEEcCCCCCCEEEEEEEEEECCCCCCCCcCCCC
Confidence            56788999999999999999999999997 77777654

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.57  E-value=2.2e-15  Score=103.46  Aligned_cols=85  Identities=18%  Similarity=0.293  Sum_probs=66.5

Q ss_pred             CCeeEE-cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           56 PAKVTF-TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        56 ~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      +|.+.. .|....+.+|++++|.|.+.|.|.+ .|+|+|++......     ....++.|.|.++..+|+|.|+|.|.|.
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVP-QIKWRKLDGSQTSK-----WLSSEPLLHIQNVDFEDEGTYECEAENI   77 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCC-EEEEEECCSCCSCC-----CSBSSSEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCC-EEEEEecccccceE-----eeeeeeEEEeCCCCccCCEEEEEEEEEC
Confidence            566655 3678889999999999999999876 79999977654321     1234668999999999999999999999


Q ss_pred             CCCcceeeEEEE
Q psy535          135 HGTQGSSGQMEV  146 (460)
Q Consensus       135 ~g~~~~~~~~~v  146 (460)
                      .|.......|.|
T Consensus        78 ~G~~~~~~~l~V   89 (91)
T d1cs6a3          78 KGRDTYQGRIII   89 (91)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            998655544443

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.57  E-value=3.4e-15  Score=103.15  Aligned_cols=89  Identities=12%  Similarity=0.111  Sum_probs=69.9

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee-cCeEEEeecCCCCCeEEEEEEEcC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ-NGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      +|.+...+....+.+|+++.|.|.+.|.|.+ .+.|++++..+............ ...|.|.++..+|+|.|+|.|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   80 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDP-TATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSC-EEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCC-eEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEEC
Confidence            5777777888899999999999999999876 79999999988653332222221 236999999999999999999999


Q ss_pred             CCCcceeeEEE
Q psy535          135 HGTQGSSGQME  145 (460)
Q Consensus       135 ~g~~~~~~~~~  145 (460)
                      .|.......+.
T Consensus        81 ~G~~~~~~~l~   91 (93)
T d1wiua_          81 LGEDEAIFEVI   91 (93)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CCEEEEEEEEE
Confidence            99865544433

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=4.9e-15  Score=105.44  Aligned_cols=95  Identities=23%  Similarity=0.376  Sum_probs=65.7

Q ss_pred             CCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcC---CeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDG---SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       345 ~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      ||..+.+...+ ++|.|+|.+|.+++++|++|.|+|+..+   .|........                ...........
T Consensus         2 PP~~p~v~~~~~~sv~l~W~~P~~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~   65 (107)
T d2ic2a1           2 PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIP----------------YGKPKWNSELG   65 (107)
T ss_dssp             CCCCCEEEECC---EEEEEEEECCSSCCEEEEEEEEEECC---CCEEEEEEEE----------------CCSCSCSSSSE
T ss_pred             cCcCCEEEEEECCEEEEEEEeCccccCCceEEEEEEEeccCCCcceEEEeeee----------------ccceeeeeccc
Confidence            44455666666 6999999999888889999999999754   3443322100                00000112223


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV  455 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~  455 (460)
                      ....++|.+|+|++.|.|||+|.|..|.|++|+..
T Consensus        66 ~~~~~~i~~L~p~t~Y~frV~A~N~~G~s~~S~~s  100 (107)
T d2ic2a1          66 KSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTS  100 (107)
T ss_dssp             EEEEEEECSCCSSEEEEEEEEEEETTSCEEECCCC
T ss_pred             ceeEEEECCCcCCcEEEEEEEEEcCCCCCCCCCCC
Confidence            45689999999999999999999999999888653

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.1e-14  Score=103.33  Aligned_cols=92  Identities=17%  Similarity=0.205  Sum_probs=66.4

Q ss_pred             CCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535          344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS  422 (460)
Q Consensus       344 ~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (460)
                      ..|..+.+...+ ++|.|+|.+|...++.+.+|.|+|+....                        +..|..+.......
T Consensus         8 ~~P~~p~~~~~~~~~v~l~W~pp~~~~~~~~~y~i~y~~~~~------------------------~~~~~~~~~~~~~~   63 (105)
T d2d9qb2           8 TMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRG------------------------EASWALVGPLPLEA   63 (105)
T ss_dssp             ECCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESSS------------------------CCCCEEEEEECSCE
T ss_pred             CCCCCCEeecCCCCeEEEEEcCCCCCCceeEEEEEEEEecCC------------------------ccceeeeecccCCc
Confidence            355555665555 69999999998878899999999997542                        22344444445567


Q ss_pred             ceEEECCCCcCceEEEEEEEeecCCCCC---CCceeEeec
Q psy535          423 TQITINRLTPATTYEFQVVGKNELGDGM---LSNIVVVKT  459 (460)
Q Consensus       423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~---~s~~~~~~T  459 (460)
                      +.+.|.+|.|++.|.|||+|+|..|.|.   +|..+.++|
T Consensus        64 ~~~~i~~L~p~t~Y~frVra~n~~g~G~~S~wS~~~~~~t  103 (105)
T d2d9qb2          64 LQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRT  103 (105)
T ss_dssp             EEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECC
T ss_pred             ceeEEecccCCeEEEEEEEEEeCCCCCCCcCCCCCEEEeC
Confidence            8899999999999999999999999865   555676766

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.55  E-value=2.3e-15  Score=103.42  Aligned_cols=85  Identities=15%  Similarity=0.285  Sum_probs=67.2

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe-ecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM-QNGSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      |...|....+.+|+++.|.|.+.|.|.+ .+.|+++|.++.......+... ..+.|.|.++..+|+|.|+|.|.|..|.
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   80 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVP-TVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK   80 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCC-CCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCB
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCC-eEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCE
Confidence            3456778889999999999999998876 7999999998875433332222 2347999999999999999999999998


Q ss_pred             cceeeEE
Q psy535          138 QGSSGQM  144 (460)
Q Consensus       138 ~~~~~~~  144 (460)
                      ...+..+
T Consensus        81 ~~~~~~l   87 (91)
T d1tnna_          81 QEAEFTL   87 (91)
T ss_dssp             CCEEEEE
T ss_pred             EEEEEEE
Confidence            7555443

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.4e-14  Score=99.16  Aligned_cols=81  Identities=20%  Similarity=0.247  Sum_probs=63.6

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      .|....+.+|+++.|.|.+.+.++.+.+.|+|++..+...   + ....++.|.|.++..+|+|.|+|.|.|..|.....
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~---~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~   83 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS---R-AMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT   83 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT---T-EEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecc---c-cEeeceEEEEecCCcccCEEEEEEEEECCCEEEEE
Confidence            4667788999999999999854444589999998877532   2 23457789999999999999999999999976544


Q ss_pred             eEEEEEe
Q psy535          142 GQMEVLV  148 (460)
Q Consensus       142 ~~~~v~v  148 (460)
                        +.|.|
T Consensus        84 --~~l~V   88 (89)
T d1gl4b_          84 --ATLHV   88 (89)
T ss_dssp             --EEEEE
T ss_pred             --EEEEE
Confidence              44444

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.54  E-value=8.4e-15  Score=99.37  Aligned_cols=82  Identities=18%  Similarity=0.227  Sum_probs=64.5

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      .+....+.+|++++|.|.+.++++++.+.|+|+|..+...       ..++.|.|.++..+|+|.|+|.|.|..|.. .+
T Consensus         6 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~-------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~-~S   77 (88)
T d2fcba2           6 QTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS-------RSDPNFSIPQANHSHSGDYHCTGNIGYTLY-SS   77 (88)
T ss_dssp             ECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-------SSCCEEEETTCCGGGCEEEEEEEEETTEEE-EC
T ss_pred             eCCCCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc-------ccccccccCccCHHHCCeEEEEEEeCCCCE-Ee
Confidence            3334557789999999999876666689999999887532       234579999999999999999999987754 45


Q ss_pred             eEEEEEeeCC
Q psy535          142 GQMEVLVRKP  151 (460)
Q Consensus       142 ~~~~v~v~~~  151 (460)
                      ..+.|.|+.|
T Consensus        78 ~~v~l~V~~P   87 (88)
T d2fcba2          78 KPVTITVQAP   87 (88)
T ss_dssp             CCEEEEECCC
T ss_pred             eeEEEEEeCC
Confidence            6777777765

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=99.54  E-value=4.3e-14  Score=96.14  Aligned_cols=84  Identities=29%  Similarity=0.380  Sum_probs=68.4

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      +|.+|.++++...+ +++.|+|++|.+ ++.+.+|.|++..  . . ..                             ..
T Consensus         3 AP~~P~~l~~~~~~~~sv~lsW~~p~~-~~~i~~Y~i~~~~--~-~-~~-----------------------------~~   48 (88)
T d1k85a_           3 APTAPTNLASTAQTTSSITLSWTASTD-NVGVTGYDVYNGT--A-L-AT-----------------------------TV   48 (88)
T ss_dssp             SCCCCEEEEEEEECSSCEEEEEECCSC-CSSEEEEEEEESS--S-E-EE-----------------------------EE
T ss_pred             CcCCCCCcEEEEecCCEEEEEEeCCCC-CCCEEEEEEEccc--e-E-EE-----------------------------ec
Confidence            48999999999876 699999998876 4468899996531  1 0 00                             02


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCC-CCCCCceeEeec
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELG-DGMLSNIVVVKT  459 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G-~s~~s~~~~~~T  459 (460)
                      ..++|++.+|.|++.|.|+|+|+|..| .|++|+.+.++|
T Consensus        49 ~~t~~~~~~L~p~t~Y~~~V~A~n~~G~~s~~S~~v~vtT   88 (88)
T d1k85a_          49 TGTTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT   88 (88)
T ss_dssp             SSSEEEECCCCSSCEEEEEEEEEETTTEECCCCCCEEEEC
T ss_pred             CCCEEEECCCCCCCEEEEEEEEEECCCCcCCCCcCEEEEC
Confidence            457899999999999999999999999 699999999987

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.8e-15  Score=101.94  Aligned_cols=78  Identities=14%  Similarity=0.071  Sum_probs=65.3

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      +|.+...+....+.+|++++|.|.+.+.++++.|+|+|++..+..  ..+.....+++|.|.+++.+|+|.|+|.|.|..
T Consensus         6 ~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1           6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGS--HPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             CCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSC--CCEEEEEESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred             CCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccc--eeeEEecCCCEEEECCCChhcCEEEEEEECCcc
Confidence            566777788888999999999999998776668999999988864  344555667899999999999999999997644

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=2e-14  Score=101.82  Aligned_cols=91  Identities=16%  Similarity=0.214  Sum_probs=65.0

Q ss_pred             CCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcc
Q psy535          345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGST  423 (460)
Q Consensus       345 ~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (460)
                      .|..+.+...+ ++|.|+|++|...++.+.+|+|+|+....                        +..|..+.......+
T Consensus        10 ~P~~p~~~~~~~~~i~v~W~pp~~~~~~~~~Y~i~y~~~~~------------------------~~~w~~v~~~~~~~~   65 (106)
T d1cd9b2          10 LDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLK------------------------GANWTLVFHLPSSKD   65 (106)
T ss_dssp             CCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESST------------------------TCCCEEEEEEESCEE
T ss_pred             CCCCCeEecCCCCEEEEEEcCcccCCccceEEEEEEeeccc------------------------cccceeeecccCCce
Confidence            44555555544 69999999998888899999999996431                        223444444445678


Q ss_pred             eEEECCCCcCceEEEEEEEeecCCCCCCCc---eeEeec
Q psy535          424 QITINRLTPATTYEFQVVGKNELGDGMLSN---IVVVKT  459 (460)
Q Consensus       424 ~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~---~~~~~T  459 (460)
                      .++|.+|.|++.|.|||+|+|..|.|.+|+   .+.++|
T Consensus        66 ~~~l~~L~p~t~Y~frVra~~~~g~g~wS~wS~~~~~~~  104 (106)
T d1cd9b2          66 QFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRP  104 (106)
T ss_dssp             EEEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEEECC
T ss_pred             EEEEeccCCCeEEEEEEEEEeCCCCCCCcCCCCCeEecC
Confidence            899999999999999999999999966554   455554

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.4e-14  Score=98.10  Aligned_cols=87  Identities=17%  Similarity=0.233  Sum_probs=68.8

Q ss_pred             CCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcc
Q psy535          345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGST  423 (460)
Q Consensus       345 ~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (460)
                      +|.++++...+ +++.|+|++|.  ++.+.+|+|+|+..+.                         ..|..........+
T Consensus         8 ~P~~l~v~~~t~~si~l~W~~p~--~~~i~~Y~v~~~~~~~-------------------------~~~~~~~~~~~~~t   60 (95)
T d2fnba_           8 QLTDLSFVDITDSSIGLRWTPLN--SSTIIGYRITVVAAGE-------------------------GIPIFEDFVDSSVG   60 (95)
T ss_dssp             CCTTCEEECCCSSCEEEECCCCC--CSSCCEEEEEEEEETS-------------------------CCEEEEEECCSSCS
T ss_pred             cCCCeEEEEEcCCEEEEEEEecC--CceEEeEEEEEEEeec-------------------------cceEEEEEeCCCCe
Confidence            79999998887 59999999885  4568999999997543                         12233333456778


Q ss_pred             eEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          424 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       424 ~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      +|+|.+|.|++.|.|+|.|+|..|.|+++ .+.+.|
T Consensus        61 ~~~i~~L~p~t~Y~~~V~a~~~~g~s~p~-~~~~~T   95 (95)
T d2fnba_          61 YYTVTGLEPGIDYDISVITLINGGESAPT-TLTQQT   95 (95)
T ss_dssp             EEEECCCCTTSEEEEEEEEEETTEECCCC-EEEEEC
T ss_pred             EEEEecccCCEEEEEEEEEEeCCcEeCCE-EEEEEC
Confidence            99999999999999999999999999888 444433

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.3e-14  Score=103.02  Aligned_cols=91  Identities=22%  Similarity=0.355  Sum_probs=72.3

Q ss_pred             CCCCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          341 PKPGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       341 ~~P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      .+|.+|.++++....+++.|+|++|...++++.+|.|+|+..+..                         .|.  .....
T Consensus        19 ~vP~~P~~~~~~~~~~si~v~W~~p~~~~g~i~~Y~i~~~~~~~~-------------------------~~~--~~~~~   71 (113)
T d1x5ia1          19 RVPEVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPH-------------------------AQT--IKVDY   71 (113)
T ss_dssp             SCCCSCSEEEEEEETTEEEEEEECCSCTTBCCCEEEEEECSSCGG-------------------------GEE--EECCT
T ss_pred             CCCCCCEeeeeeeCCCEEEEEEEccccCCccEEEEEEEeeecccc-------------------------cee--eeeeC
Confidence            468999999998767899999999988888999999999865431                         011  11235


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      +.+.++|.+|.|++.|.|+|+|.|..|.|+++.. .++|
T Consensus        72 ~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~~~~-~~~T  109 (113)
T d1x5ia1          72 KQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYE-SAVT  109 (113)
T ss_dssp             TCCEEEECSCCSSCEECCEEEEECSSCBCCCCCC-CEEC
T ss_pred             CccEEEEeccccCcEEEEEEEEECCCcCCCCeee-EEEe
Confidence            6789999999999999999999999999987543 3444

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=3.5e-14  Score=98.81  Aligned_cols=89  Identities=20%  Similarity=0.380  Sum_probs=67.1

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee-CCeecCccccccEEEee----cCeEEEeecCCCCCeEEEEEEEc
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQTKDIVVMQ----NGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      +.+.|....+.+|+++.|.|.+.|.|+.+.+.|++ ++..+.+ ...++....    .++|.|.++..+|+|.|+|.|.|
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   81 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA   81 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECC-BSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeee-ccccEEEEeecCcceEEEcccCchhhceEEEEEEEe
Confidence            44567778889999999999999988656899999 5555544 233333322    23699999999999999999999


Q ss_pred             CCCCcceeeEEEEEee
Q psy535          134 AHGTQGSSGQMEVLVR  149 (460)
Q Consensus       134 ~~g~~~~~~~~~v~v~  149 (460)
                      ..|.. .++.+.|.|.
T Consensus        82 ~~G~~-~~~tv~l~V~   96 (97)
T d1epfa1          82 EDGTQ-SEATVNVKIF   96 (97)
T ss_dssp             TTTEE-EEEEEEEEEE
T ss_pred             CCCcE-EEEEEEEEEE
Confidence            98864 4556666653

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.7e-14  Score=101.17  Aligned_cols=91  Identities=21%  Similarity=0.368  Sum_probs=67.6

Q ss_pred             cCCeeEEccee--eeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcccc--ccEE-EeecCeEEEeecCCCCCeEEEE
Q psy535           55 FPAKVTFTPTV--QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQT--KDIV-VMQNGSLLFTRVNQNHQGRYTC  129 (460)
Q Consensus        55 ~~p~~~~~~~~--~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~--~~~~-~~~~~~l~i~~~~~~d~G~y~C  129 (460)
                      .||.+...+..  ..+..|+++.|.|.+.|.|.+ .|+|+++|..+.....  .... ....+.|.|.++..+|+|.|+|
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p-~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   80 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEP-TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC   80 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCC-EEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEE
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCC-EEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEE
Confidence            36676655443  456779999999999999876 7999999998864322  2222 2234579999999999999999


Q ss_pred             EEEcCCCCcceeeEEEE
Q psy535          130 TPYNAHGTQGSSGQMEV  146 (460)
Q Consensus       130 ~~~~~~g~~~~~~~~~v  146 (460)
                      .|.|..|.......|.|
T Consensus        81 ~a~N~~G~~~~~~~l~V   97 (100)
T d1qz1a3          81 IAENKAGEQDASIHLKV   97 (100)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEE
Confidence            99999998655544444

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.6e-14  Score=98.22  Aligned_cols=84  Identities=20%  Similarity=0.222  Sum_probs=67.4

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      .+....+.+|++++|.|.+.+.+++..+.|||||..+...       ...+.|.|.+++.+|+|.|+|+|.|..+.. .+
T Consensus         6 q~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~-------~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~-~S   77 (89)
T d1f2qa2           6 QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW-------YENHNISITNATVEDSGTYYCTGKVWQLDY-ES   77 (89)
T ss_dssp             EESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-------CCSSEEEESSCCGGGCEEEEEEEEETTEEE-EC
T ss_pred             eCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccc-------cccceEEEeeeeeecCcEEEEEEEeCCCCe-Ee
Confidence            4444557789999999999887666789999999988532       134579999999999999999999977654 57


Q ss_pred             eEEEEEeeCCCc
Q psy535          142 GQMEVLVRKPPA  153 (460)
Q Consensus       142 ~~~~v~v~~~p~  153 (460)
                      ..+.|.|.++|+
T Consensus        78 ~~v~i~V~~~Pr   89 (89)
T d1f2qa2          78 EPLNITVIKAPR   89 (89)
T ss_dssp             CCEEEEEECSCC
T ss_pred             eeEEEEEEeCCC
Confidence            788888888773

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=8.1e-14  Score=98.37  Aligned_cols=92  Identities=23%  Similarity=0.368  Sum_probs=71.0

Q ss_pred             CCCCCcceEEEee----c-ceEEEEecCCCC----CCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceee
Q psy535          342 KPGPPRNVSVTEV----N-NGFVISWQPPLE----RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDW  412 (460)
Q Consensus       342 ~P~~p~~~~~~~~----~-~~v~l~W~~~~~----~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (460)
                      .|.||.++.+...    . ++|.|+|++|..    .++.+.+|+|+|+..+.                         ..|
T Consensus         2 kP~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~-------------------------~~~   56 (103)
T d1f6fb2           2 EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEA-------------------------EEW   56 (103)
T ss_dssp             CCCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSC-------------------------SCC
T ss_pred             CCCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCC-------------------------cce
Confidence            4889999887522    2 479999999853    24578899999997653                         112


Q ss_pred             eeeccCCCCcceEEECCCCcCceEEEEEEEeecCCC-CCCCceeEeecC
Q psy535          413 LPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD-GMLSNIVVVKTK  460 (460)
Q Consensus       413 ~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~-s~~s~~~~~~T~  460 (460)
                      .....  ...+.+.|.+|.+++.|.|||+|.|..|. |+||+.+.++|+
T Consensus        57 ~~~~~--~~~~~~~i~~L~p~t~Y~~rVra~~~~G~wS~wS~~~~~~~P  103 (103)
T d1f6fb2          57 EIHFT--GHQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQESSVEMP  103 (103)
T ss_dssp             EEEEE--ETCSEEEECCCCTTCEEEEEEEEEESSSCCCCCCCCEEEECC
T ss_pred             eeecc--cceeEEEeCCCCcceEEEEEEEEEeCCCCCCCCcCceeeECc
Confidence            22111  24678999999999999999999999996 999999998875

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.9e-16  Score=109.38  Aligned_cols=96  Identities=18%  Similarity=0.206  Sum_probs=73.5

Q ss_pred             CCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          341 PKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       341 ~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      .+|..|..+++...+ +++.|+|++|...++.|.+|+|+|+..+.-.                      ...| ......
T Consensus         3 ~~~d~P~~v~~~~~~~~sv~l~W~pP~~~ng~i~~Y~v~y~~~~~~~----------------------~~~~-~~~~~~   59 (102)
T d2dtge1           3 KADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEE----------------------LHLC-DTRKHF   59 (102)
T ss_dssp             CCCCCCCCCCCCSSSSSCCCCCCCCCCSCSSCEEEECCCCBSSSBCC----------------------CCCC-CCSSSC
T ss_pred             CCCCCCCCCEEEEECCCEEEEEEEeCCCCcceEEEeeeEEEecCCCC----------------------ceee-eeeecc
Confidence            346788888887766 6999999999888999999999998654200                      0000 011223


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      .....+.+.+|.+++ |.|+|+|.|..|.|++|+++.|.|+
T Consensus        60 ~~~~~~~~~~L~~~t-Y~~rV~A~n~~G~g~~S~~v~f~~~   99 (102)
T d2dtge1          60 ALERGCRLRGLSPGN-YSVRIRATSLAGNGSWTEPTYFYVT   99 (102)
T ss_dssp             CCTTCCCCCSCCSSE-ECCCCCEEETTBCCCCCCCCEECCC
T ss_pred             cceEEEEEeccceee-EEEEEEEEcCCccCCCCCCEEEEcc
Confidence            456678899999985 9999999999999999999999875

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.3e-14  Score=98.49  Aligned_cols=85  Identities=20%  Similarity=0.302  Sum_probs=65.5

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec---CeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN---GSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      .|....+.+|+++.|.|.+.+.|.+ .+.|+|++..+.......+.....   +.|.|.+++.+|+|.|+|.|.|..|..
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   80 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEP-DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETE   80 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSC-CEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCE
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCc-eEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCE
Confidence            4677888999999999999998876 799999999987533322222222   369999999999999999999998865


Q ss_pred             ceeeEEEEEe
Q psy535          139 GSSGQMEVLV  148 (460)
Q Consensus       139 ~~~~~~~v~v  148 (460)
                       .+..+.|.|
T Consensus        81 -~S~~~~l~V   89 (91)
T d1rhfa1          81 -ISQPVWLTV   89 (91)
T ss_dssp             -ECCCEEEEE
T ss_pred             -EEEEEEEEE
Confidence             344555554

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.52  E-value=2.3e-14  Score=97.62  Aligned_cols=87  Identities=26%  Similarity=0.566  Sum_probs=74.0

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEeccc
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      +|.+...|.....+..|+.+.|.|.+   .|.|.|.+.|++ ++..+...+....++.|.|.++...|.|.|+|.|.|..
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~---~g~P~p~v~W~~-~~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~   77 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKV---TGLPAPNVVWSH-NAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEH   77 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEE---EEESCCCCEEEE-TTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETT
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEE---EEeCCCEEEEEe-CCccCccccEEEeeeeEEECCCChhhCEEEEEEEEECC
Confidence            45666666555467899999999999   799999999999 55666777788888899999999999999999999999


Q ss_pred             ceeeeeeEEEE
Q psy535          231 ATIVQAAQLVV  241 (460)
Q Consensus       231 g~~~~~~~l~v  241 (460)
                      |.......|.|
T Consensus        78 G~~~~~~~l~V   88 (89)
T d1biha4          78 GDKYFETLVQV   88 (89)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            99888877765

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.52  E-value=3.3e-14  Score=96.75  Aligned_cols=87  Identities=26%  Similarity=0.552  Sum_probs=74.5

Q ss_pred             CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccc
Q psy535          152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  231 (460)
                      |.|...+.+. .+..|+.+.|.|.+   .|.|.|.+.|++++..+....++...++.|.|.++...|.|.|+|.|.|..|
T Consensus         2 P~f~~~~~~~-~v~~G~~~~l~C~~---~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (89)
T d1cs6a4           2 PDWLDVITDT-EADIGSDLRWSCVA---SGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHG   77 (89)
T ss_dssp             EEEEECCCCE-EEETTCCEEEECEE---EEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCeEEECCCE-EECCCCcEEEEEEE---EEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCC
Confidence            4555566665 68899999999999   7999999999996655556677888888999999999999999999999999


Q ss_pred             eeeeeeEEEEe
Q psy535          232 TIVQAAQLVVE  242 (460)
Q Consensus       232 ~~~~~~~l~v~  242 (460)
                      ....+..|.|.
T Consensus        78 ~~~~~~~l~V~   88 (89)
T d1cs6a4          78 TVYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            98888888775

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.51  E-value=3.3e-14  Score=96.54  Aligned_cols=81  Identities=14%  Similarity=0.197  Sum_probs=63.2

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      .+....+.+|++++|.|.+.++++++.+.|+|||..+..       ...++.|.|.+++.+|+|.|+|.|.|..+.. .+
T Consensus         8 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~-------~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~-~S   79 (89)
T d1fnla2           8 QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNV-SS   79 (89)
T ss_dssp             ECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-------EEECCCEEESSCCGGGCEEEEEEEEETTEEE-EC
T ss_pred             ECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccce-------eccccccEECccceeccceEEEEEEeCCCCe-EE
Confidence            344455789999999999987666668999999988752       1245679999999999999999999987754 45


Q ss_pred             eEEEEEeeC
Q psy535          142 GQMEVLVRK  150 (460)
Q Consensus       142 ~~~~v~v~~  150 (460)
                      ..+.|.|++
T Consensus        80 ~~v~itV~E   88 (89)
T d1fnla2          80 ETVNITITQ   88 (89)
T ss_dssp             CCEEEEEEC
T ss_pred             eeEEEEEEe
Confidence            566676653

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.2e-14  Score=96.71  Aligned_cols=77  Identities=14%  Similarity=0.124  Sum_probs=58.4

Q ss_pred             eeeeecceeeEEEEEEEe-cCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceee
Q psy535           64 TVQYLPFRLQGVVQCHIK-ANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSG  142 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~  142 (460)
                      ....+.+|+++.|.|.+. +.|.+ .++|++++.++..    .......+.|.|.+++.+|+|.|+|.|.|..|..+.+.
T Consensus        11 ~~~~~~~G~~~~l~C~~~~g~p~p-~v~W~~~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~   85 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLACADRGA-SVQWRGLDTSLGA----VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTV   85 (90)
T ss_dssp             SEEEEETTCCEEEEEEECCSSTTC-EEEEESSTTTTCC----EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CeEEEEeCCcEEEEEEecCCCCcc-EEEEEEeeeeeee----eeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEE
Confidence            456678999999999986 55554 8999998877632    22233445799999999999999999999888755544


Q ss_pred             EEE
Q psy535          143 QME  145 (460)
Q Consensus       143 ~~~  145 (460)
                      .|.
T Consensus        86 ~l~   88 (90)
T d1gsma1          86 QLL   88 (90)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=9.2e-15  Score=101.80  Aligned_cols=82  Identities=20%  Similarity=0.314  Sum_probs=66.6

Q ss_pred             CCeeEEcceeeeecce---eeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEE
Q psy535           56 PAKVTFTPTVQYLPFR---LQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g---~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  132 (460)
                      +|.|...|....+.+|   +++.|.|.+.|.|.+ .++|+++|..+.......+....+..|.|..+..+|+|.|+|.|.
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p-~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   82 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPA-TYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVAT   82 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCC-EEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCC-EEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEE
Confidence            5677777877776655   789999999998876 899999999987655555555555567778889999999999999


Q ss_pred             cCCCCc
Q psy535          133 NAHGTQ  138 (460)
Q Consensus       133 ~~~g~~  138 (460)
                      |..|..
T Consensus        83 N~~G~~   88 (97)
T d1cs6a1          83 NARGTV   88 (97)
T ss_dssp             ETTEEE
T ss_pred             ECCCEE
Confidence            999975

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8.5e-14  Score=97.86  Aligned_cols=90  Identities=14%  Similarity=0.252  Sum_probs=68.1

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeec----CccccccEEEeecC---eEEEeecC-CCCCeEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL----EPYQTKDIVVMQNG---SLLFTRVN-QNHQGRY  127 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~----~~~~~~~~~~~~~~---~l~i~~~~-~~d~G~y  127 (460)
                      ||.+...+....+.+|+.+.|.|.+.+.|++..++|++++...    ......++.+....   .|.|.++. ..|+|.|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y   81 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY   81 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE
Confidence            7888888888999999999999999999877679999965332    22223334333332   69999998 5799999


Q ss_pred             EEEEEcCCCCcceeeEEE
Q psy535          128 TCTPYNAHGTQGSSGQME  145 (460)
Q Consensus       128 ~C~~~~~~g~~~~~~~~~  145 (460)
                      +|.|.|..|.......|.
T Consensus        82 ~C~A~N~~G~~~~~~~L~   99 (101)
T d3b5ha1          82 RCNGTSSKGSDQAIITLR   99 (101)
T ss_dssp             EEEEEETTEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEE
Confidence            999999999865544443

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.6e-14  Score=99.77  Aligned_cols=92  Identities=20%  Similarity=0.283  Sum_probs=72.0

Q ss_pred             CCCCcceEEEeec-ceEEEEecCCCCC----CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535          343 PGPPRNVSVTEVN-NGFVISWQPPLER----ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV  417 (460)
Q Consensus       343 P~~p~~~~~~~~~-~~v~l~W~~~~~~----~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (460)
                      +.||.++++...+ ++|.|+|++|...    ...+..|.|+|+..+.                       ....|..   
T Consensus         2 ~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~-----------------------~~~~~~~---   55 (100)
T d1x5ja1           2 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIP-----------------------ANTKYKN---   55 (100)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSS-----------------------SSCCCEE---
T ss_pred             CCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCC-----------------------CcceeEe---
Confidence            5789999999887 6999999987432    2467789999987553                       0111111   


Q ss_pred             CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      .......+.|.||.|++.|.|+|.|+|..|.|++|..+.++|.
T Consensus        56 ~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~s~~S~~~~~~T~   98 (100)
T d1x5ja1          56 ANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTF   98 (100)
T ss_dssp             CCBCSSEEEEESCCTTCEECCEEEEECSSCBCCCCCCCCEECC
T ss_pred             cCCCccEEEECCCCCCCEEEEEEEEEeCCcCcCCCCeEEEEec
Confidence            1245678999999999999999999999999999999999884

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.50  E-value=2.9e-14  Score=99.10  Aligned_cols=82  Identities=22%  Similarity=0.341  Sum_probs=64.2

Q ss_pred             eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcccccc--EEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           64 TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKD--IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      ....+.+|+++.|.|.+.|.|.+ .++|++||.++.......  ......++|.|.++..+|+|.|+|.|.|..|....+
T Consensus        13 ~~~~v~~G~~v~l~C~~~g~P~p-~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   91 (97)
T d3dara1          13 RLHAVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT   91 (97)
T ss_dssp             CEEEECTTCCEEEECCEEEESCC-EEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ccEEECCCCcEEEEEEEeEECCC-EEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEE
Confidence            34567889999999999999876 799999999987543322  222334689999999999999999999999986555


Q ss_pred             eEEEE
Q psy535          142 GQMEV  146 (460)
Q Consensus       142 ~~~~v  146 (460)
                      ..++|
T Consensus        92 ~~l~V   96 (97)
T d3dara1          92 YHLDV   96 (97)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44443

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=1.2e-13  Score=95.32  Aligned_cols=90  Identities=18%  Similarity=0.274  Sum_probs=68.9

Q ss_pred             CCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535          344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS  422 (460)
Q Consensus       344 ~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (460)
                      .+|.++++...+ +++.|+|++|   .+.+.+|.|+|+..+.-                       ............+.
T Consensus         2 daP~~l~v~~~~~~sv~v~W~~p---~~~~~~y~v~y~~~~~~-----------------------~~~~~~~~~~~~~~   55 (92)
T d1tdqa2           2 DAPKNLRVGSRTATSLDLEWDNS---EAEAQEYKVVYSTLAGE-----------------------QYHEVLVPKGIGPT   55 (92)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECC---SSCCSEEEEEEEETTCC-----------------------CCEEEEEECCSSSE
T ss_pred             ccCcCCEEEEecCCEEEEEEEec---CCcccceEEEEEEcCCC-----------------------cceeeEEEecCCCe
Confidence            468899998887 6999999998   45688999999975430                       00111111233567


Q ss_pred             ceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          423 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      +++.|.+|.|++.|.|+|.|+|..|.|+++ .+.++|+
T Consensus        56 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~p~-~~~~~Te   92 (92)
T d1tdqa2          56 TKTTLTDLVPGTEYGVGISAVMNSKQSIPA-TMNARTE   92 (92)
T ss_dssp             EEEEECSCCTTCEEEEEEEEEETTEECCCE-EEEEECC
T ss_pred             eEEEECCccCCCEEEEEEEEEeCCCEecCE-EEEEECc
Confidence            789999999999999999999999999877 5778775

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9.6e-14  Score=98.11  Aligned_cols=87  Identities=24%  Similarity=0.387  Sum_probs=68.0

Q ss_pred             CCCCCcceEEEeec---ceEEEEecCCCC--CCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeec
Q psy535          342 KPGPPRNVSVTEVN---NGFVISWQPPLE--RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP  416 (460)
Q Consensus       342 ~P~~p~~~~~~~~~---~~v~l~W~~~~~--~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (460)
                      .|.||.++.+....   +.|.|+|++|..  .++.+..|+|+|+..+.                         ..|..+.
T Consensus         1 kP~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~-------------------------~~~~~~~   55 (104)
T d1n26a3           1 QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERS-------------------------KTFTTWM   55 (104)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTC-------------------------SCCEEEE
T ss_pred             CCcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCC-------------------------Cceeeec
Confidence            38999999998764   479999999863  46689999999997653                         1222222


Q ss_pred             cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCce
Q psy535          417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNI  454 (460)
Q Consensus       417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~  454 (460)
                      . ....+.+.|.+|.|++.|.|||+|.|..|.|.+|++
T Consensus        56 ~-~~~~~~~~i~~L~p~t~Y~~rVra~n~~g~g~wSew   92 (104)
T d1n26a3          56 V-KDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEW   92 (104)
T ss_dssp             C-GGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCC
T ss_pred             c-ccceEEEEECCCCCCCEEEEEEEEEeCCCccCCcCC
Confidence            2 135678999999999999999999999999887775

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.6e-13  Score=97.19  Aligned_cols=92  Identities=23%  Similarity=0.347  Sum_probs=68.4

Q ss_pred             CCCCCcceEEEee----c-ceEEEEecCCCCC----CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceee
Q psy535          342 KPGPPRNVSVTEV----N-NGFVISWQPPLER----ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDW  412 (460)
Q Consensus       342 ~P~~p~~~~~~~~----~-~~v~l~W~~~~~~----~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (460)
                      .|.||.++.+...    + ++|.|+|++|...    ++.+..|+++|+..+...                         |
T Consensus         2 kP~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~-------------------------~   56 (104)
T d3d48r2           2 QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAE-------------------------W   56 (104)
T ss_dssp             CCCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSS-------------------------C
T ss_pred             CCcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccc-------------------------e
Confidence            4899999988532    2 4799999998642    346788999998765411                         1


Q ss_pred             eeeccCCCCcceEEECCCCcCceEEEEEEEeecCCC-CCCCceeEeecC
Q psy535          413 LPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGD-GMLSNIVVVKTK  460 (460)
Q Consensus       413 ~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~-s~~s~~~~~~T~  460 (460)
                      ....  ....+.++|.+|.+++.|.|||+|.|..|. |++|+++.++|+
T Consensus        57 ~~~~--~~~~~~~~i~~L~p~t~Y~~rVrA~n~~G~ws~wS~~~~v~tP  103 (104)
T d3d48r2          57 EIHF--AGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIP  103 (104)
T ss_dssp             EEEE--EETCSEEEECC--CCCEEEEEEEEEESSSCCCCCCCCEEEECC
T ss_pred             eeec--cccccEEEECCCCCCCEEEEEEEEEeCCCCCCCCcCCEEEECc
Confidence            1110  135678999999999999999999999997 999999999985

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.49  E-value=9.1e-14  Score=96.51  Aligned_cols=85  Identities=19%  Similarity=0.256  Sum_probs=65.1

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEe---ecCeEEEeecCCCCCeEEEEEEEcCCCCc
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVM---QNGSLLFTRVNQNHQGRYTCTPYNAHGTQ  138 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~g~~  138 (460)
                      .+....+.+|+++.|.|.+.|.|.+ .+.|+++|..+......++...   ...+|.|.+++.+|+|.|+|.|.|..|..
T Consensus         9 ~~~~~~~~~G~~v~l~C~~~g~P~~-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   87 (97)
T d1biha3           9 VSKDMMAKAGDVTMIYCMYGSNPMG-YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP   87 (97)
T ss_dssp             ECCSEEEETTSCEEEEEEEECSSCC-CCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSC
T ss_pred             CCCCEEEecCCeEEEEEEEEEecCC-EEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcE
Confidence            4566788899999999999998876 7999999999865433333221   22479999999999999999999999876


Q ss_pred             ceeeEEEEEe
Q psy535          139 GSSGQMEVLV  148 (460)
Q Consensus       139 ~~~~~~~v~v  148 (460)
                      . +..+.|.|
T Consensus        88 ~-s~s~~L~V   96 (97)
T d1biha3          88 Q-KHSLKLTV   96 (97)
T ss_dssp             E-EEEEEEEE
T ss_pred             E-EEEEEEEE
Confidence            3 33444443

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=4.3e-14  Score=98.09  Aligned_cols=87  Identities=14%  Similarity=0.190  Sum_probs=67.0

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      .+.+..+.+|++++|.|.+.+. ++ .+.|+++|..+.... ........++|.|.++..+|+|.|+|.|.|..|.. .+
T Consensus         9 ~~~~~~v~~g~~v~l~C~~~~~-~~-~v~W~~~~~~l~~~~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~-~S   84 (96)
T d1l6za2           9 QVTNTTVKELDSVTLTCLSNDI-GA-NIQWLFNSQSLQLTE-RMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVR-RS   84 (96)
T ss_dssp             ECSCSEECTTSCEEEEECCCCS-SC-EEEEEETTEECCCCT-TEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCE-EC
T ss_pred             EcCceEEeCCCeEEEEEccCCC-CC-CEEEEEeeeeccccc-ceeccCCceEEEEeccchhhceEEEEEEEeCCCCe-EE
Confidence            4555678899999999998663 33 799999999986432 22233344689999999999999999999988865 45


Q ss_pred             eEEEEEeeCCC
Q psy535          142 GQMEVLVRKPP  152 (460)
Q Consensus       142 ~~~~v~v~~~p  152 (460)
                      ..+.|.|.++|
T Consensus        85 ~~~~L~V~~~P   95 (96)
T d1l6za2          85 NSIKLDIIFDP   95 (96)
T ss_dssp             CCCEEEECCSC
T ss_pred             EeEEEEEEcCC
Confidence            56777777776

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.9e-14  Score=103.88  Aligned_cols=95  Identities=23%  Similarity=0.396  Sum_probs=73.3

Q ss_pred             CCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          341 PKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       341 ~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      ..|.+|.++++...+ ++|.|+|+++.+.++.+..|.++|+..+..                       ...|..... .
T Consensus        15 d~P~~P~~~~v~~~~~~sv~l~W~~p~~~~~~i~~~~~~~~~~~~~-----------------------~~~~~~~~~-~   70 (127)
T d1ueya_          15 DVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHK-----------------------PGLWHHQTE-V   70 (127)
T ss_dssp             CSCCCCEEEEEECCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTTC-----------------------TTCEEEEEE-E
T ss_pred             ccCcCCCCcEEEEecCCeEEEEEeCCcccccceEeeeeeecccccc-----------------------ceeEEEEee-c
Confidence            358999999998877 599999999988888999999999975420                       001111111 1


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeE-eec
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV-VKT  459 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~-~~T  459 (460)
                      ...+.+.+.+|.|++.|.|||+|+|..|.|++|+... ++|
T Consensus        71 ~~~~~~~i~~L~p~t~Y~frV~A~n~~G~s~~S~~s~~~~t  111 (127)
T d1ueya_          71 SGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLT  111 (127)
T ss_dssp             ESSCCEEEECCCTTCEECCEEEEEESSCBCCCCSCCCCEEC
T ss_pred             CCceEEEECCCccCCEEEEEEEEEcCCcCcCCcCCcccEEc
Confidence            3566788999999999999999999999999987643 444

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1e-13  Score=100.21  Aligned_cols=84  Identities=23%  Similarity=0.332  Sum_probs=69.3

Q ss_pred             cceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceEEECCCCcCc
Q psy535          355 NNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPAT  434 (460)
Q Consensus       355 ~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  434 (460)
                      .++|.|+|+++.. ++.+.+|+|+|+..+.                     ......|..........+++.|.+|.|++
T Consensus        29 ~tsi~v~W~~p~~-~~~i~gY~v~y~~~~~---------------------~~~~~~~~~~~v~~~~~~s~~i~~L~p~t   86 (120)
T d1ujta_          29 PTTVQVTWTVDRQ-PQFIQGYRVMYRQTSG---------------------LQATSSWQNLDAKVPTERSAVLVNLKKGV   86 (120)
T ss_dssp             TTEEEEEEEESSC-CSSCCEEEEEEEESSS---------------------SSTTTCCEEEECCCTTCCEEEEESCCSSE
T ss_pred             CCeEEEEecCCCC-CCcEEEEEEEeeeccc---------------------CCCCcceEEEEeccCceeEEEECCCCCCC
Confidence            3699999998864 5789999999997543                     11233566666666778899999999999


Q ss_pred             eEEEEEEEeecCCCCCCCceeEeecC
Q psy535          435 TYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       435 ~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      .|.|+|+|+|..|.|++|+.+.++|.
T Consensus        87 ~Y~f~V~A~n~~G~G~~S~~~~~~T~  112 (120)
T d1ujta_          87 TYEIKVRPYFNEFQGMDSESKTVRTT  112 (120)
T ss_dssp             EEEEEEEEESSSCCCCCCCCEEEEEC
T ss_pred             EEEEEEEEEeCCcCcCCCCCEEEEeC
Confidence            99999999999999999999998873

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.3e-14  Score=93.66  Aligned_cols=75  Identities=11%  Similarity=0.074  Sum_probs=60.3

Q ss_pred             eeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      ..+.+|++++|.|.+.|.|+| .|.|++++..+.         ..+..|.|.++..+|+|.|+|.|.|..|....  .+.
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P-~i~W~~~~~~~~---------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~--~~~   76 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSP-SVQCRSPRGKNI---------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEF--KID   76 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCC-EEEEECTTCCEE---------EESSEEEESSCCGGGCEEEEEEEEETTEEEEE--EEE
T ss_pred             eEEECCCeEEEEEEeEcCCch-heEEEeecccce---------eeeeeeeeeecccccccEEEEEEEeCCCEEEE--EEE
Confidence            457889999999999999876 899999876543         34567999999999999999999999887544  455


Q ss_pred             EEeeCCC
Q psy535          146 VLVRKPP  152 (460)
Q Consensus       146 v~v~~~p  152 (460)
                      |.|...|
T Consensus        77 v~V~~~~   83 (84)
T d2nxyb2          77 IVVLAFQ   83 (84)
T ss_dssp             ECEECCC
T ss_pred             EEEEecC
Confidence            5555444

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.9e-14  Score=104.79  Aligned_cols=96  Identities=18%  Similarity=0.227  Sum_probs=71.0

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCCCCCC-ccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPPLERA-SLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~~-~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      +|.+|..+.+...+ ++|.|+|++|.+.+ ..+.+|.|+|+....                     ......|..+..  
T Consensus        15 pp~~P~~p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~---------------------~~~~~~~~~~~~--   71 (120)
T d1wfua_          15 PLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEE---------------------DPKMHSYGVIYT--   71 (120)
T ss_dssp             CCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEE---------------------CTTTCCEEEEEE--
T ss_pred             CCCcCCCCEEeEecCCEEEEEEECCcccCcccccceeeeeeeecc---------------------cccccceeeecc--
Confidence            46677777777666 69999999887554 478888888874210                     001122333221  


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ...++|.|.+|+|++.|.|||+|+|.+|.|++|+.+.++|.
T Consensus        72 ~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~  112 (120)
T d1wfua_          72 GYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATT  112 (120)
T ss_dssp             ESCSEEEEESCCTTCEEEEEEEEECSSSCEEECCCEEEECC
T ss_pred             ccccEEeCCCCCCCcEeeEEEEEEeCCcEeCCCCCEEEEeC
Confidence            35678999999999999999999999999999999998874

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.5e-13  Score=97.31  Aligned_cols=93  Identities=30%  Similarity=0.524  Sum_probs=71.1

Q ss_pred             CCCCcceEEEeec---ceEEEEecCCCCCCccceEEEEEEEEcCC--eeeeccccCCCCcccccccceecCceeeeeecc
Q psy535          343 PGPPRNVSVTEVN---NGFVISWQPPLERASLIQYYLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV  417 (460)
Q Consensus       343 P~~p~~~~~~~~~---~~v~l~W~~~~~~~~~i~~y~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (460)
                      |.||.++.+....   ++|.|+|+++.+.++.+.+|.|+|+....  |...                         ....
T Consensus         5 P~pP~~~~v~~~~~~~~si~v~W~~p~~~~~~~~~Y~v~y~~~~~~~~~~~-------------------------~~~~   59 (115)
T d1bqua2           5 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQI-------------------------PPED   59 (115)
T ss_dssp             CCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEEEEEETTCSSCEEC-------------------------CGGG
T ss_pred             CCCCCCCEEEEeccCCCEEEEEEeeccccccceeeeeeeeeeeeeeeeecc-------------------------cccc
Confidence            8899998887433   58999999998878899999999997543  1111                         0112


Q ss_pred             CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCC---ceeEeecC
Q psy535          418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS---NIVVVKTK  460 (460)
Q Consensus       418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s---~~~~~~T~  460 (460)
                      .....+++.|.+|.+++.|.|+|+|+|..|.|.+|   ..+.++|+
T Consensus        60 ~~~~~~~~~i~~L~~~t~Y~~~V~a~~~~G~g~~S~~S~~~~~~T~  105 (115)
T d1bqua2          60 TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY  105 (115)
T ss_dssp             GCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEEC
T ss_pred             ccccccEEeeCCCccCcEEEEEEEEEeCCCccCCcCCcCCEEEECC
Confidence            23456899999999999999999999999987655   45666663

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.3e-13  Score=96.10  Aligned_cols=91  Identities=22%  Similarity=0.434  Sum_probs=69.1

Q ss_pred             CCCCcceEEEeec-------ceEEEEecCCCCC----CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCcee
Q psy535          343 PGPPRNVSVTEVN-------NGFVISWQPPLER----ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKD  411 (460)
Q Consensus       343 P~~p~~~~~~~~~-------~~v~l~W~~~~~~----~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (460)
                      |.||.++.+....       .+|.|+|++|...    +..+..|+|+|+..+.                         ..
T Consensus         1 PdPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~-------------------------~~   55 (106)
T d1axib2           1 PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNE-------------------------TK   55 (106)
T ss_dssp             CCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTC-------------------------SS
T ss_pred             CcCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCC-------------------------cc
Confidence            7899999885331       3699999998643    2367899999997543                         12


Q ss_pred             eeeeccCCCCcceEEECCCCcCceEEEEEEEeecCC--CCCCCceeEeecC
Q psy535          412 WLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG--DGMLSNIVVVKTK  460 (460)
Q Consensus       412 ~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G--~s~~s~~~~~~T~  460 (460)
                      |..+.  ....+.+.|.+|.+++.|.|||+|.|..|  +|+||+.+.++|+
T Consensus        56 w~~~~--~~~~~~~~i~~L~~~t~Y~frVRa~~~~~g~ws~wS~~v~v~~P  104 (106)
T d1axib2          56 WKMMD--PILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLP  104 (106)
T ss_dssp             CEECC--CBSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCCCCEEECCC
T ss_pred             ceeee--ecccceEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECC
Confidence            33222  13567899999999999999999999765  5999999998875

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.5e-13  Score=101.11  Aligned_cols=102  Identities=26%  Similarity=0.232  Sum_probs=74.7

Q ss_pred             CCC-CCCcceEEEeec-ceEEEEecCCCC--CCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeec
Q psy535          341 PKP-GPPRNVSVTEVN-NGFVISWQPPLE--RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIP  416 (460)
Q Consensus       341 ~~P-~~p~~~~~~~~~-~~v~l~W~~~~~--~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (460)
                      .+| .+|.++++...+ ++|.|+|++|..  .++.+.+|.++|+....-.....         .       ....+  ..
T Consensus        12 ~~P~~~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~---------~-------~~~~~--~~   73 (125)
T d1uena_          12 DLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNR---------R-------HIEKK--IL   73 (125)
T ss_dssp             CCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTT---------C-------CCCEE--EE
T ss_pred             cCCCCCCcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCcccee---------e-------cccce--EE
Confidence            344 689999998876 699999999864  36789999999986432000000         0       00000  11


Q ss_pred             cCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          417 VTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       417 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      ........+.|.+|.|++.|.|+|+|+|..|.|++|+++.|+|+
T Consensus        74 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  117 (125)
T d1uena_          74 TFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTP  117 (125)
T ss_dssp             EEESSCSEEEEESCCSSCEEEEEEEEEESSCEEEECCCEEEECC
T ss_pred             EeCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCCCCEEEECC
Confidence            12245678999999999999999999999999999999999985

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.8e-13  Score=96.68  Aligned_cols=90  Identities=13%  Similarity=0.101  Sum_probs=66.5

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCC--CCeEEEeeCCeecCcc-ccccEEEee---------cCeEEEeecCCCCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPT--FQYVTWTKDKRLLEPY-QTKDIVVMQ---------NGSLLFTRVNQNHQ  124 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~~~~~~~-~~~~~~~~~---------~~~l~i~~~~~~d~  124 (460)
                      +.|...|....+.+|++++|.|.+.|.|.  .+.|.|+|++...... ...++....         ...|.|.+++..|+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            35677888899999999999999999874  2479999987543221 222222111         13599999999999


Q ss_pred             eEEEEEEEcCCCCcceeeEEEE
Q psy535          125 GRYTCTPYNAHGTQGSSGQMEV  146 (460)
Q Consensus       125 G~y~C~~~~~~g~~~~~~~~~v  146 (460)
                      |.|+|.|.|..|...++..|.|
T Consensus        85 G~Y~C~a~N~~G~~~~~~~L~V  106 (110)
T d2avga1          85 GGYRCEVSTKDKFDCSNFNLTV  106 (110)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEE
T ss_pred             cEEEEEEEECCCeEEEEEEEEE
Confidence            9999999999998765544444

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8e-14  Score=98.37  Aligned_cols=80  Identities=16%  Similarity=0.122  Sum_probs=61.0

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcccc-ccEEEeecC-----eEEEeecCCCCCeEEEEEEE
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQT-KDIVVMQNG-----SLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~-----~l~i~~~~~~d~G~y~C~~~  132 (460)
                      +...+....+.+|+++.|.|.+.|.|.++.|+|+|++..+..... .......+.     .|.|.++..+|+|.|+|.|.
T Consensus         6 fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   85 (104)
T d2aw2a1           6 YIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSAN   85 (104)
T ss_dssp             CCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             EEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEE
Confidence            345677788999999999999999886558999998876543222 222222222     49999999999999999999


Q ss_pred             cCCCCc
Q psy535          133 NAHGTQ  138 (460)
Q Consensus       133 ~~~g~~  138 (460)
                      |..|..
T Consensus        86 N~~G~~   91 (104)
T d2aw2a1          86 FQSNLI   91 (104)
T ss_dssp             ETTEEE
T ss_pred             cCCCeE
Confidence            998865

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.2e-15  Score=100.60  Aligned_cols=87  Identities=11%  Similarity=0.084  Sum_probs=69.2

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCe-EEEEEEEcC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQG-RYTCTPYNA  134 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~  134 (460)
                      .|.+...+....+.+|+++.|.|.+.|.|.+ .++|++++..+.... ........+.|.|.++..+|.| .|+|.|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLE-QAGWILTELEQSATV-MKSGGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCC-CCCEEESCCCSSEEE-CCCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCc-EEEEEECCceeeeee-eeeeeccceeEEEccccccccceEEEEEEEcC
Confidence            4677778888889999999999999999877 799999998775422 2222233457999999999999 699999999


Q ss_pred             CCCcceeeEE
Q psy535          135 HGTQGSSGQM  144 (460)
Q Consensus       135 ~g~~~~~~~~  144 (460)
                      .|....+..+
T Consensus        80 ~G~~~~s~~l   89 (92)
T d2ifga1          80 VGRAEVSVQV   89 (92)
T ss_dssp             TEECCEEECC
T ss_pred             CCEEEEEEEE
Confidence            9987655443

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=3.2e-13  Score=93.01  Aligned_cols=90  Identities=20%  Similarity=0.357  Sum_probs=70.7

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      ++.+|.++.+...+ +++.|+|++|   .+++.+|.|+|+..+.                         ..|......+.
T Consensus         3 v~~~P~~l~v~~v~~~si~v~W~~p---~~~~~~y~i~~~~~~~-------------------------~~~~~~~~~~~   54 (93)
T d1tdqa1           3 VIDGPTQILVRDVSDTVAFVEWTPP---RAKVDFILLKYGLVGG-------------------------EGGKTTFRLQP   54 (93)
T ss_dssp             SSCCCEEEEEEEECSSCEEEEEECC---SSCCSEEEEEEEESSS-------------------------SCCCEEEEECT
T ss_pred             cCCcCCCCEEEEeCCCEEEEEEEcc---ccCCCceEEEEEeccC-------------------------cceeeEEEeCC
Confidence            45799999999887 6999999987   4578899999997543                         01111112335


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      +.+.++|.+|.|++.|.|+|.|+|..|.|+++. ..++|+
T Consensus        55 ~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~~~-~~~tT~   93 (93)
T d1tdqa1          55 PLSQYSVQALRPGSRYEVSISAVRGTNESDASS-TQFTTE   93 (93)
T ss_dssp             TCSEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEECC
T ss_pred             CceEEEEeCcccceEEEEEEEEEeCCCCcCCEE-EEEECc
Confidence            678999999999999999999999999998874 677774

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.4e-13  Score=94.14  Aligned_cols=77  Identities=13%  Similarity=0.118  Sum_probs=59.0

Q ss_pred             eeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEE
Q psy535           66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQME  145 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~  145 (460)
                      ..+.+|+++.|.|.+.|.|.+ .++|++++..+..  .........+.|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~p-~i~W~~~~~~~~~--~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~   87 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCESP-FFSWRTQIDSPLN--GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE   87 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSSC-EEEEEETTCCCCS--SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEeccCCCCc-eEEEEecCcccee--eeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEE
Confidence            455789999999999998876 7999998776542  2222223345799999999999999999999998765544443

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.6e-13  Score=94.96  Aligned_cols=90  Identities=14%  Similarity=0.032  Sum_probs=68.9

Q ss_pred             CCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          341 PKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       341 ~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      .+|++|.++++...+ +++.|+|+++.+++. ..+|.|+|+..+.+.                         |.......
T Consensus         2 ~PP~~P~n~~~~~~~~~si~~~W~p~~~~~~-~~~y~v~~~~~~~~~-------------------------~~~~~~~~   55 (95)
T d1bqua1           2 LPPEKPKNLSCIVNEGKKMRCEWDGGRETHL-ETNFTLKSEWATHKF-------------------------ADCKAKRD   55 (95)
T ss_dssp             CCCCCCEEEEEEEETTSCCEEEEECCSCCSS-CCEEEEEEEETTEEC-------------------------CCEECCSS
T ss_pred             cCcCCCeeeEEEEccCCEEEEEEeCcccCCC-ceEEEEEEEEcccce-------------------------eEeecccc
Confidence            358999999999887 599999999977544 579999999865421                         11222233


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEe
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV  457 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~  457 (460)
                      .....+.+.+|.+++.|.|+|.|.|.+|.|+ |+.+.+
T Consensus        56 ~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~s~-S~~v~~   92 (95)
T d1bqua1          56 TPTSCTVDYSTVYFVNIEVWVEAENALGKVT-SDHINF   92 (95)
T ss_dssp             CTTEEECSSCCCTTSCEEEEEEEEETTEEEE-CCCEEE
T ss_pred             cceeeeeeeecCCCcEEEEEEEEEeCCcccc-CCCeec
Confidence            4566788889999999999999999999986 555543

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.4e-13  Score=93.83  Aligned_cols=93  Identities=27%  Similarity=0.417  Sum_probs=74.3

Q ss_pred             ceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cceEEEccccceeceEEEEEEec
Q psy535          153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSN  228 (460)
Q Consensus       153 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n  228 (460)
                      .+...+... .+..|+.+.|.|.+   .|.|.+.+.|++++..+....++.+.    ...|.|.++...|+|.|+|.|.|
T Consensus         2 ~~~~~p~~~-~v~~G~~~~l~C~v---~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   77 (101)
T d2cqva1           2 QIIQFPEDQ-KVRAGESVELFGKV---TGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN   77 (101)
T ss_dssp             EESCCCCSE-EEETTCCEEEEEEE---ESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred             eEEeeCCcE-EEeCCCcEEEEEEE---EecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEE
Confidence            344445554 68899999999999   78999999999966665555665543    22699999999999999999999


Q ss_pred             ccceeeeeeEEEEecCCCCCCC
Q psy535          229 EVATIVQAAQLVVEGTQPHAPY  250 (460)
Q Consensus       229 ~~g~~~~~~~l~v~~~~p~~p~  250 (460)
                      ..|....++.|.|.. .|.+|.
T Consensus        78 ~~G~~~~~~~l~V~~-~P~pP~   98 (101)
T d2cqva1          78 KLGSRQAQVNLTVVD-KPDPPA   98 (101)
T ss_dssp             SSCEEECCEEEEEEC-SCSCCC
T ss_pred             CCCEEEEEEEEEEEe-cCCCcC
Confidence            999999999999986 455553

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2e-13  Score=93.54  Aligned_cols=88  Identities=19%  Similarity=0.286  Sum_probs=68.1

Q ss_pred             CCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCC
Q psy535          343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG  421 (460)
Q Consensus       343 P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (460)
                      +.||.++++...+ +++.|+|++|   .+++.+|.|+|+..+.-                      +...+   .....+
T Consensus         2 ld~P~~l~v~~~s~~s~~l~W~~p---~~~~~~y~v~~~~~~~~----------------------~~~~~---~~~~~~   53 (90)
T d1tena_           2 LDAPSQIEVKDVTDTTALITWFKP---LAEIDGIELTYGIKDVP----------------------GDRTT---IDLTED   53 (90)
T ss_dssp             CCCCEEEEEESCCSSCEEEEEECC---SSCCSEEEEEEEETTCT----------------------TCCEE---EEEETT
T ss_pred             CCCCCCcEEEEecCCEEEEEEEeC---ceEeccEEEEEEEcCCC----------------------ceeEE---EEecCC
Confidence            5789999999887 5999999987   35789999999975430                      00011   112357


Q ss_pred             cceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       422 ~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      .+.++|.+|.|++.|.|+|.|+|..|.|+++. ..+.|
T Consensus        54 ~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~-~~~~T   90 (90)
T d1tena_          54 ENQYSIGNLKPDTEYEVSLISRRGDMSSNPAK-ETFTT   90 (90)
T ss_dssp             CCEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEEC
T ss_pred             cceeeEeeecCCCEEEEEEEEEeCCCEeCCEE-EEEEC
Confidence            78999999999999999999999999998874 45554

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.2e-13  Score=96.20  Aligned_cols=94  Identities=23%  Similarity=0.403  Sum_probs=66.7

Q ss_pred             EecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec-----CeEEEeecCCCCCeEE
Q psy535           53 VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-----GSLLFTRVNQNHQGRY  127 (460)
Q Consensus        53 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~y  127 (460)
                      |+.||.+.....   ...+....|.|.+.|.|.+ .++|+++|..+............+     +.|.|.+++.+|+|.|
T Consensus         2 V~~PP~i~~~~~---~~~~~~~~i~~~v~G~P~P-~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   77 (105)
T d1wwca_           2 VYYPPRVVSLEE---PELRLEHCIEFVVRGNPPP-TLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNY   77 (105)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEECSSCC-EEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEE
T ss_pred             EEcCCeeEEeCC---CEEEEEEEEEEEEEEeCCC-eEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEE
Confidence            567777643222   1234456688899999887 799999999987543333322222     3599999999999999


Q ss_pred             EEEEEcCCCCcceeeEEEEEeeCCC
Q psy535          128 TCTPYNAHGTQGSSGQMEVLVRKPP  152 (460)
Q Consensus       128 ~C~~~~~~g~~~~~~~~~v~v~~~p  152 (460)
                      +|.|.|..|..  +..+.|.|..+|
T Consensus        78 ~C~a~N~~G~~--~~~~~v~V~~~P  100 (105)
T d1wwca_          78 TLIAKNPLGTA--NQTINGHFLKEP  100 (105)
T ss_dssp             EEEEEETTEEE--EEEEEECCSCCC
T ss_pred             EEEEEcCCCEE--EEEEEEEEEeCC
Confidence            99999999876  445666666665

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.4e-13  Score=94.90  Aligned_cols=94  Identities=26%  Similarity=0.353  Sum_probs=72.0

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCCCCC--CccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeecc
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPPLER--ASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV  417 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~--~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (460)
                      .+.||.++++...+ +++.|+|.+|...  ...+..|+++|+..+. |..                         .....
T Consensus         2 rl~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------~~~~~   56 (104)
T d2b5ib2           2 RLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEE-------------------------APLLT   56 (104)
T ss_dssp             CCCCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTT-------------------------SCCEE
T ss_pred             ccCCCCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEeccccccee-------------------------eeEEe
Confidence            37899999999988 5999999988654  3467789999987543 110                         01111


Q ss_pred             CCCCcceEEECCCCcCceEEEEEEEeecCCC----CCCCceeEeecC
Q psy535          418 TPPGSTQITINRLTPATTYEFQVVGKNELGD----GMLSNIVVVKTK  460 (460)
Q Consensus       418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~----s~~s~~~~~~T~  460 (460)
                      .......+.|.+|.|++.|.|+|+|.|..|.    |++|.++.++|+
T Consensus        57 ~~~~~~~~~i~~L~p~t~Y~~rVra~~~~g~~g~wS~wS~~v~~~T~  103 (104)
T d2b5ib2          57 LKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTK  103 (104)
T ss_dssp             ECSCCCEEEECSCCTTCEEEEEEEEEESCCSSCCCCCCCCCEEEECC
T ss_pred             cCCCcEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCcCCEEEECC
Confidence            2245778999999999999999999999885    677888999985

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3e-13  Score=92.10  Aligned_cols=87  Identities=28%  Similarity=0.468  Sum_probs=65.7

Q ss_pred             CCcceEEEeec---ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCC
Q psy535          345 PPRNVSVTEVN---NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG  421 (460)
Q Consensus       345 ~p~~~~~~~~~---~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (460)
                      +|.++.+....   +++.|+|++|.  ++.|.+|.|+|+..+.                        ...|..+ .++..
T Consensus         2 aP~~~~vt~~~~~~~s~~vsW~~P~--~~~i~~Y~i~y~~~~~------------------------~~~~~~~-~v~~~   54 (93)
T d1owwa_           2 GPVEVFITETPSQPNSHPIQWNAPQ--PSHISKYILRWRPKNS------------------------VGRWKEA-TIPGH   54 (93)
T ss_dssp             CCCEEECCCCSSCTTCEEEEEECCS--SSCEEEEEEEEEETTC------------------------SSCCEEE-EECSS
T ss_pred             cCcccEEEEccCCCCEEEEEeeccc--ccceeEEEEEEeeccc------------------------cceeeee-ccCCC
Confidence            56677776554   58999999984  4679999999997543                        0111111 22357


Q ss_pred             cceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       422 ~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      ...++|.||+|++.|.|+|.|+|..|.|+.+. ..|+|
T Consensus        55 ~~~~~l~gL~P~t~Y~v~v~av~~~G~s~~~~-~~~tT   91 (93)
T d1owwa_          55 LNSYTIKGLKPGVVYEGQLISIQQYGHQEVTR-FDFTT   91 (93)
T ss_dssp             CCEEEECSCCSSEEEEEEEEEEESSSCEEEEE-EEEEE
T ss_pred             ccEEEECCcccCcEEEEEEEEEeCCCccCcEE-EEEEe
Confidence            78999999999999999999999999998884 55554

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.4e-13  Score=94.48  Aligned_cols=96  Identities=19%  Similarity=0.265  Sum_probs=69.2

Q ss_pred             EecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEee------cCeEEEeecCCCCCeE
Q psy535           53 VEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQ------NGSLLFTRVNQNHQGR  126 (460)
Q Consensus        53 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~  126 (460)
                      |+.||.++....   ...++...+.|.+.|.|.+ .++|+++|..+.......+....      .+.|.|.+++..|+|.
T Consensus         1 v~~pP~it~~~~---~~~~~~~~i~~~v~G~P~P-~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   76 (103)
T d1wwbx_           1 VHFAPTITFLES---PTSDHHWCIPFTVKGNPKP-ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGD   76 (103)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEECSSCC-EEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             CccCCeeEEcCC---CccceeEEEEEEEEEeCCC-EEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCce
Confidence            356777643221   2346778899999999876 79999999999753322222211      1359999999999999


Q ss_pred             EEEEEEcCCCCcceeeEEEEEeeCCCce
Q psy535          127 YTCTPYNAHGTQGSSGQMEVLVRKPPAF  154 (460)
Q Consensus       127 y~C~~~~~~g~~~~~~~~~v~v~~~p~~  154 (460)
                      |+|.|.|..|..  +..+.|.|..+|.+
T Consensus        77 Y~C~a~N~~G~~--~~~~~v~V~~~P~i  102 (103)
T d1wwbx_          77 YTLIAKNEYGKD--EKQISAHFMGWPGI  102 (103)
T ss_dssp             EEEEEECSSCEE--EEEEEECCSCCCCC
T ss_pred             EEEEEeccCCEE--EEEEEEEEEeCCCC
Confidence            999999999985  55667777777643

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.2e-13  Score=98.72  Aligned_cols=84  Identities=21%  Similarity=0.341  Sum_probs=62.7

Q ss_pred             eeecceeeEEEEEEEe-cCCCCCeEEEeeCCeecCcccccc--------E-EEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           66 QYLPFRLQGVVQCHIK-ANPTFQYVTWTKDKRLLEPYQTKD--------I-VVMQNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~--------~-~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      ..+.+|+++.|.|.+. |.|.+ .++|++++..+.......        . .....+.|.|.+++.+|+|.|+|.|.|..
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   90 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPS-EYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY   90 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCC-EEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred             CEEecCCeEEEEEEeecCCCCC-EEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence            3567899999999985 56655 899999998775422111        1 11123469999999999999999999999


Q ss_pred             CCcceeeEEEEEeeC
Q psy535          136 GTQGSSGQMEVLVRK  150 (460)
Q Consensus       136 g~~~~~~~~~v~v~~  150 (460)
                      |....+..+.|.|..
T Consensus        91 G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          91 GTAMRSEAAHMDAVE  105 (110)
T ss_dssp             SCCEECCCEEEEEES
T ss_pred             CcEEEEEEEEEEEEe
Confidence            988777778887754

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4e-13  Score=91.84  Aligned_cols=80  Identities=33%  Similarity=0.552  Sum_probs=62.9

Q ss_pred             CCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535          344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS  422 (460)
Q Consensus       344 ~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (460)
                      .+|.++++...+ +++.|+|++|.   +.+.+|.|+|+..+.                         ..|..........
T Consensus         2 daP~nl~v~~~~~~s~~l~W~~p~---~~i~~Y~i~~~~~~~-------------------------~~~~~~~~~~~~~   53 (89)
T d1fnha3           2 DAPSNLRFLATTPNSLLVSWQPPR---ARITGYIIKYEKPGS-------------------------PPREVVPRPRPGV   53 (89)
T ss_dssp             CCCEEEEEEEEETTEEEEEEECCS---SCCSEEEEEEECTTS-------------------------CCEECTTCCCTTC
T ss_pred             ccCcCCEEEEecCCEEEEEEeCCC---cCCceEEEEEeeccC-------------------------CccEEEEEcCCCc
Confidence            368899998887 69999999873   568999999997543                         1122222334567


Q ss_pred             ceEEECCCCcCceEEEEEEEeecCCCCCC
Q psy535          423 TQITINRLTPATTYEFQVVGKNELGDGML  451 (460)
Q Consensus       423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~  451 (460)
                      +.+.|.+|.|++.|.|+|.|+|..|.|++
T Consensus        54 ~~~~~~~L~p~t~Y~~~V~a~n~~g~S~p   82 (89)
T d1fnha3          54 TEATITGLEPGTEYTIYVIALKNNQKSEP   82 (89)
T ss_dssp             CEEEEESCCTTCEEEEEEEEESSSCEEEE
T ss_pred             cEEEEEeeeCCCEEEEEEEEEcCCCEeCC
Confidence            88999999999999999999999998754

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7e-14  Score=102.67  Aligned_cols=113  Identities=15%  Similarity=0.172  Sum_probs=75.7

Q ss_pred             CCCcceEEEeec-ceEEEEecCCCCC-CccceEEEEEEEEcCCee--eeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          344 GPPRNVSVTEVN-NGFVISWQPPLER-ASLIQYYLIKYRTDGSWK--TLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       344 ~~p~~~~~~~~~-~~v~l~W~~~~~~-~~~i~~y~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      .+|.++.+...+ ++|.|+|++|... ++.|.+|.|+|+..+...  ....... .....+...   .............
T Consensus         3 s~plnl~~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~   78 (125)
T d2dtge3           3 NELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDA-CGSNSWTVV---DIDPPLRSNDPKS   78 (125)
T ss_dssp             CCBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCC-SCCCCCCCC---CSCCEEEECCCCS
T ss_pred             CCCEEEEEEEecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccc-cCCccccee---cccCcceeeeecC
Confidence            467888888887 6999999998643 578999999998754311  0000000 000000000   0011122223344


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCC-----CCCCceeEeecC
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGD-----GMLSNIVVVKTK  460 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~-----s~~s~~~~~~T~  460 (460)
                      ...+++.|.+|.|++.|.|+|+|+|.+|+     |+.|+.+.++|+
T Consensus        79 ~~~~~~~l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~v~~~T~  124 (125)
T d2dtge3          79 QNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD  124 (125)
T ss_dssp             SSCCEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCC
T ss_pred             CccCEEEECCCccCCEEEEEEEEEeCCCccCCCCCCCcccEEEEcC
Confidence            67789999999999999999999999995     889999999996

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.7e-13  Score=94.57  Aligned_cols=91  Identities=15%  Similarity=0.217  Sum_probs=59.1

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCCCCCCc---cceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeecc
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPPLERAS---LIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV  417 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~---~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (460)
                      .|.+|.+|++...+ +++.|+|.+|...++   ....|.|+|+..+...                      ...+..+ .
T Consensus         1 kP~~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~----------------------~~~~~~~-~   57 (101)
T d1iarb2           1 KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPA----------------------DFRIYNV-T   57 (101)
T ss_dssp             CCCCCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCS----------------------CEEEEEE-C
T ss_pred             CcccCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeeccccee----------------------eeeeeee-c
Confidence            48999999998877 599999998865443   4557999998754310                      0011111 1


Q ss_pred             CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535          418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV  455 (460)
Q Consensus       418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~  455 (460)
                      .......+.|.+|.|++.|.|||+|.|..|.|++|++.
T Consensus        58 ~~~~~~~~~i~~L~p~t~Y~~rVrA~~~~g~g~wSewS   95 (101)
T d1iarb2          58 YLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWS   95 (101)
T ss_dssp             SSCCEEEECC-----CCCEEEEEEEECGGGTCCCCCCC
T ss_pred             cCccceEEEECCCCCCCEEEEEEEEEcCCCCCCCcCCC
Confidence            12345678899999999999999999999988777764

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=9.7e-13  Score=89.80  Aligned_cols=77  Identities=27%  Similarity=0.353  Sum_probs=65.0

Q ss_pred             cccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          162 YQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       162 ~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      ..+..|+.+.|.|.+.  .+.|.+.+.|++++... ...+....++.|.|.++...|+|.|+|.|.|..|.......|.|
T Consensus        12 ~~v~~G~~~~l~C~~~--~~~p~~~v~W~k~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          12 QSVRPGADVTFICTAK--SKSPAYTLVWTRLHNGK-LPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             EEECTTCCEEEEEEEE--ESSSCCEEEEEEGGGBC-CCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEeCCCcEEEEEEcc--CCCCCCEEEEecCCcee-eccccEeeceEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            3688999999999984  47888999999955544 44455667889999999999999999999999999888888776

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=9.5e-13  Score=90.23  Aligned_cols=85  Identities=26%  Similarity=0.443  Sum_probs=63.8

Q ss_pred             cceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcceE
Q psy535          347 RNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGSTQI  425 (460)
Q Consensus       347 ~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (460)
                      ++|++...+ +++.|+|++|.   +++.+|.|+|+..+..                         .|......+.+.+++
T Consensus         1 rnl~v~~~t~~sv~l~W~~p~---~~~~~Y~v~~~~~~~~-------------------------~~~~~~~~~~~~t~~   52 (91)
T d1fnaa_           1 RDLEVVAATPTSLLISWDAPA---VTVRYYRITYGETGGN-------------------------SPVQEFTVPGSKSTA   52 (91)
T ss_dssp             CCCEEEEECSSCEEEECCCCS---SCCSEEEEEEEETTCC-------------------------SCCEEEEEETTCCEE
T ss_pred             CCCEEEEeCCCEEEEEEEccc---eEecEEEEEEEcCCCC-------------------------ceeEEEEeCCCccEE
Confidence            467888887 69999999883   5688999999975430                         011111123567899


Q ss_pred             EECCCCcCceEEEEEEEeecCCCCCCCc-e--eEeec
Q psy535          426 TINRLTPATTYEFQVVGKNELGDGMLSN-I--VVVKT  459 (460)
Q Consensus       426 ~i~~L~p~~~Y~~~v~a~n~~G~s~~s~-~--~~~~T  459 (460)
                      .|.+|.|++.|.|+|.|+|..|.|+++. +  +.++|
T Consensus        53 ~l~~L~p~t~Y~~~V~a~~~~g~s~~~s~~v~~~~~T   89 (91)
T d1fnaa_          53 TISGLKPGVDYTITVYAVTGRGDSPASSKPISINYRT   89 (91)
T ss_dssp             EECSCCTTCEEEEEEEEECTTCCSSCSCCCEEEEEEC
T ss_pred             EeCCCCCCCEEEEEEEEEeCCccCCCcCCCEEEEEEc
Confidence            9999999999999999999999998765 2  34555

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.41  E-value=2.2e-13  Score=93.25  Aligned_cols=86  Identities=23%  Similarity=0.403  Sum_probs=68.4

Q ss_pred             CCceeeC-CCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecc
Q psy535          151 PPAFTIK-PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       151 ~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      +|.+... |... .+..|+.++|.|.+   .|.|.|.+.|+++++....  .....++.|.|.++...|.|.|+|.|.|.
T Consensus         4 ~P~i~~~~p~~~-~~~~G~~v~l~C~~---~g~P~p~i~W~k~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T d1cs6a3           4 APSIKAKFPADT-YALTGQMVTLECFA---FGNPVPQIKWRKLDGSQTS--KWLSSEPLLHIQNVDFEDEGTYECEAENI   77 (91)
T ss_dssp             EEEEEECCCSEE-EEETTCCEEEECEE---EEESCCEEEEEECCSCCSC--CCSBSSSEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCeEEeeCCCcE-EEecCCcEEEEEEE---EEccCCEEEEEecccccce--EeeeeeeEEEeCCCCccCCEEEEEEEEEC
Confidence            5555554 4444 68899999999999   7999999999996654332  22234568999999999999999999999


Q ss_pred             cceeeeeeEEEEe
Q psy535          230 VATIVQAAQLVVE  242 (460)
Q Consensus       230 ~g~~~~~~~l~v~  242 (460)
                      .|.......|.|.
T Consensus        78 ~G~~~~~~~l~V~   90 (91)
T d1cs6a3          78 KGRDTYQGRIIIH   90 (91)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            9998888888774

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.7e-13  Score=93.47  Aligned_cols=79  Identities=14%  Similarity=0.232  Sum_probs=63.5

Q ss_pred             eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEE
Q psy535           65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQM  144 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~  144 (460)
                      ...+.+|+++.|.|.+.+ +++ .+.|+++|..+... ..+.....+++|.|.++..+|+|.|+|.|.|..|.......+
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~-~v~W~~~g~~l~~~-~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l   82 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLA-RVFWKFQNGVLKAE-SPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVV   82 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTC-EEEEEESSSBCCCC-SSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCC-ceeeecCcccceee-eeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEE
Confidence            356788999999999988 444 79999999988753 455556677889999999999999999999988876555444


Q ss_pred             EE
Q psy535          145 EV  146 (460)
Q Consensus       145 ~v  146 (460)
                      .+
T Consensus        83 ~~   84 (92)
T d1olza1          83 AK   84 (92)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.2e-13  Score=90.98  Aligned_cols=81  Identities=19%  Similarity=0.399  Sum_probs=63.1

Q ss_pred             CCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcc
Q psy535          345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGST  423 (460)
Q Consensus       345 ~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (460)
                      ||.++++...+ +++.|+|+++.  ++.+.+|.|+|+..+..                         .+..........+
T Consensus         3 pP~~l~~~~~~~~sv~l~W~~p~--~~~~~~y~v~y~~~~~~-------------------------~~~~~~~~~~~~~   55 (91)
T d1fnfa2           3 PPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRYSPVKNE-------------------------EDVAELSISPSDN   55 (91)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCT--TCCCSEEEEEEEETTCT-------------------------TCCEEEEECTTCC
T ss_pred             cCCceEEEEeCCCEEEEEEEecC--CCCcceeEEEEEECCCC-------------------------ccEEEEEeCCCce
Confidence            68999999877 69999999874  45789999999975430                         0011112235678


Q ss_pred             eEEECCCCcCceEEEEEEEeecCCCCCCC
Q psy535          424 QITINRLTPATTYEFQVVGKNELGDGMLS  452 (460)
Q Consensus       424 ~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s  452 (460)
                      .+.|.+|.|++.|.|+|+|+|..|.|++.
T Consensus        56 ~~~i~~L~p~t~Y~~~V~a~~~~g~S~p~   84 (91)
T d1fnfa2          56 AVVLTNLLPGTEYVVSVSSVYEQHESTPL   84 (91)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             EEEEeceeCCCEEEEEEEEEcCCCCCCCE
Confidence            99999999999999999999999988654

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.7e-12  Score=89.71  Aligned_cols=83  Identities=17%  Similarity=0.324  Sum_probs=65.7

Q ss_pred             CCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535          344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS  422 (460)
Q Consensus       344 ~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (460)
                      .+|.++++...+ +++.|+|++|.   +.+.+|.|+|+..+.                         ..+..........
T Consensus         3 d~P~~l~v~~vt~~sv~l~W~~p~---~~~~~y~i~~~~~~~-------------------------~~~~~~~~~~~~~   54 (94)
T d1j8ka_           3 DRPKGLAFTDVDVDSIKIAWESPQ---GQVSRYRVTYSSPED-------------------------GIHELFPAPDGEE   54 (94)
T ss_dssp             CCCCCCEEEEEETTEEEEECCCCS---SCCSCEEEEEEETTT-------------------------EEEEECCCCCSSC
T ss_pred             CCCCCCEEEEecCCEEEEEEeCCC---ccccceEEEEEeecC-------------------------CCceEEEecCCCc
Confidence            478899999887 69999999883   468899999987653                         1122223334577


Q ss_pred             ceEEECCCCcCceEEEEEEEeecCCCCCCCce
Q psy535          423 TQITINRLTPATTYEFQVVGKNELGDGMLSNI  454 (460)
Q Consensus       423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~  454 (460)
                      +++.|.+|.|++.|.|+|.|+|..|.|++...
T Consensus        55 ~~~~i~~L~p~t~Y~~~V~a~~~~g~S~p~~~   86 (94)
T d1j8ka_          55 DTAELQGLRPGSEYTVSVVALHDDMESQPLIG   86 (94)
T ss_dssp             CEEEECSCCCCSEEEEEEEECSSSCCCCCEEE
T ss_pred             cEEEECCCCCCCEEEEEEEEEeCCCCcCCEEE
Confidence            89999999999999999999999999877644

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.40  E-value=7e-13  Score=91.22  Aligned_cols=88  Identities=22%  Similarity=0.314  Sum_probs=70.8

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cceEEEccccceeceEEEEEE
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVV  226 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a  226 (460)
                      +|.+...+... .+..|+.+.|.|.+   .|.|.|.+.|++++..+....+....    ...|.|.++...|+|.|+|.|
T Consensus         2 ~P~i~~~~~~~-~v~~G~~~~l~c~~---~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a   77 (93)
T d1wiua_           2 KPKILTASRKI-KIKAGFTHNLEVDF---IGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKV   77 (93)
T ss_dssp             CCEECCCCCEE-EECSSBCCEEEEEE---ECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEE
T ss_pred             CCeEEeCCCcE-EEeCCCeEEEEEEE---EEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEE
Confidence            46666555554 78999999999999   79999999999976655544444332    236999999999999999999


Q ss_pred             ecccceeeeeeEEEEe
Q psy535          227 SNEVATIVQAAQLVVE  242 (460)
Q Consensus       227 ~n~~g~~~~~~~l~v~  242 (460)
                      .|..|.....+.|.|.
T Consensus        78 ~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          78 KNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EETTEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEC
Confidence            9999999988888763

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.3e-14  Score=100.06  Aligned_cols=92  Identities=20%  Similarity=0.338  Sum_probs=66.7

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEe-cCCCCCeEEEeeCCeecCccccccE--------EEeecCeEEEeecCCCCCeE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIK-ANPTFQYVTWTKDKRLLEPYQTKDI--------VVMQNGSLLFTRVNQNHQGR  126 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~G~  126 (460)
                      ||.+........+.+|++++|.|.+. |.|.+ .+.|+|++..+........        .....+.|.|.++..+|+|.
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~   80 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPS-EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGE   80 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCC-EEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCC
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCC-EEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcE
Confidence            45444333445677899999999985 56654 8999999988754321111        11123469999999999999


Q ss_pred             EEEEEEcCCCCcceeeEEEEEe
Q psy535          127 YTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus       127 y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      |+|.|.|..|....+..+.|.+
T Consensus        81 Y~C~a~N~~G~~~~s~~v~v~v  102 (104)
T d1nbqa2          81 YSCEARNGYGTPMTSNAVRMEA  102 (104)
T ss_dssp             EEEEEECSSSCCEECCCBCCEE
T ss_pred             EEEEEEECCCceEEEEEEEEEE
Confidence            9999999999987777776665

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=5.8e-13  Score=93.63  Aligned_cols=90  Identities=17%  Similarity=0.233  Sum_probs=67.8

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcc---------ccccEEEeecCeEEEeecCCCCCeEEE
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPY---------QTKDIVVMQNGSLLFTRVNQNHQGRYT  128 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d~G~y~  128 (460)
                      .+...+....+.+|+++.|.|.+.+.|.+ .+.|++++......         .........+++|.|.++..+|+|.|+
T Consensus         3 sV~t~~~~v~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           3 SVYTAQSDVQVPENESIKLTCTYSGFSSP-RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             EEECSCSEEEEETTCCEEEECEEESCSSE-EEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             CEEccCCcEEEeCCCEEEEEEEcCCCCCC-eEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            34455666778899999999999998765 89999854332110         111222335568999999999999999


Q ss_pred             EEEEcCCCCcceeeEEEEEe
Q psy535          129 CTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus       129 C~~~~~~g~~~~~~~~~v~v  148 (460)
                      |.|.|..|.......++|.|
T Consensus        82 C~a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          82 CMVSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             EEEEETTSSSEEEEEEEEEE
T ss_pred             EEEEECCCCEEEEEEEEEEE
Confidence            99999999987777777766

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.5e-12  Score=88.58  Aligned_cols=85  Identities=18%  Similarity=0.310  Sum_probs=64.2

Q ss_pred             CCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCC
Q psy535          343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG  421 (460)
Q Consensus       343 P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (460)
                      |.+|.+|++...+ +++.|+|++|..  +.+..|.|+|+..+.                         ..|.....  ..
T Consensus         3 P~~P~nl~v~~~~~~~v~l~W~~p~~--~~~~~y~v~y~~~~~-------------------------~~~~~~~~--~~   53 (95)
T d2b5ic1           3 PWAPENLTLHKLSESQLELNWNNRFL--NHCLEHLVQYRTDWD-------------------------HSWTEQSV--DY   53 (95)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEECSSC--STTCEEEEEEEETTC-------------------------SSCEEEEE--CS
T ss_pred             CcCCCCCEEEEEeCCEEEEEECCCCC--ceeEEEEEEEEcCCC-------------------------ceeeEeee--cc
Confidence            8999999999877 599999998853  557899999997653                         11222221  35


Q ss_pred             cceEEECCCCcCceEEEEEEEeecCC------CCCCCceeE
Q psy535          422 STQITINRLTPATTYEFQVVGKNELG------DGMLSNIVV  456 (460)
Q Consensus       422 ~~~~~i~~L~p~~~Y~~~v~a~n~~G------~s~~s~~~~  456 (460)
                      .+.++|.+|.|++.|.|||+|.+..|      .|++|.++.
T Consensus        54 ~~~~~~~~L~p~t~Y~frVRa~~~~~~~~~g~WSeWS~pv~   94 (95)
T d2b5ic1          54 RHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIH   94 (95)
T ss_dssp             SCEEEECSCCTTSCEEEEEEEECCSSSCCCCCCCCCCCCEE
T ss_pred             cceeEcCCCCCCCEEEEEEEEeeCCCCCCCCCccCCCCcee
Confidence            67899999999999999999987654      355665553

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.7e-14  Score=94.65  Aligned_cols=75  Identities=23%  Similarity=0.267  Sum_probs=59.3

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCccee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSS  141 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~  141 (460)
                      .|....+.+|+.+.|.|.+.|.|.+ .++|+|++..+.+.            +.+.+++.+|+|.|+|.|.|..|...  
T Consensus        10 ~p~~~~~~~G~~~~l~C~a~G~P~P-~v~W~k~g~~~~~~------------~~~~~v~~~d~G~Y~C~A~N~~G~~~--   74 (84)
T d2oz4a3          10 CPGNWTWPENSQQTPMCQAWGNPLP-ELKCLKDGTFPLPI------------GESVTVTRDLEGTYLCRARSTQGEVT--   74 (84)
T ss_dssp             SCSEEEEETTCEECCCCCCEEESCC-EEEEEETTTEECCT------------TSCEECCGGGCEEEEEEEEETTEEEE--
T ss_pred             CCccEEEeCCCEEEEEEEEeEcCcc-EEEEEEeeccceee------------eeeeccccCCCCEEEEEEEcCCCEEE--
Confidence            3567788899999999999999887 89999999876531            23457889999999999999998754  


Q ss_pred             eEEEEEeeCC
Q psy535          142 GQMEVLVRKP  151 (460)
Q Consensus       142 ~~~~v~v~~~  151 (460)
                      ..+.|.|..|
T Consensus        75 ~~~~l~V~~P   84 (84)
T d2oz4a3          75 REVTVNVLSP   84 (84)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEECC
Confidence            4455555433

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.39  E-value=4.8e-13  Score=95.55  Aligned_cols=90  Identities=17%  Similarity=0.161  Sum_probs=63.1

Q ss_pred             CCeeEE-cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcc----ccccEE------E----eecCeEEEeecC
Q psy535           56 PAKVTF-TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPY----QTKDIV------V----MQNGSLLFTRVN  120 (460)
Q Consensus        56 ~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~----~~~~~~------~----~~~~~l~i~~~~  120 (460)
                      +|.+.. .|.+..+.+|+++.|.|.+.|.|.+ .|.|+|++......    ......      .    ...+.|.|.++.
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQP-HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCC-EEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCC-eEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            344443 3678889999999999999998876 79999976442110    000000      0    112469999999


Q ss_pred             CCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535          121 QNHQGRYTCTPYNAHGTQGSSGQMEV  146 (460)
Q Consensus       121 ~~d~G~y~C~~~~~~g~~~~~~~~~v  146 (460)
                      .+|+|.|+|.|.|..|....+..|.|
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999999998776666554

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.6e-13  Score=94.79  Aligned_cols=96  Identities=15%  Similarity=0.203  Sum_probs=69.8

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecC-CCC-CeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTF-QYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  132 (460)
                      .|+.+.+.+....+.+|+.++|.|.+.|. |.+ .+++|++++..+.......  ....+.|.|..+..+|+|.|+|+|.
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~--~~~~s~l~i~~~~~dd~g~ytC~A~   80 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG--EPAEVTTTVLVRRDHHGAQFSCRTE   80 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT--TTEEEEEEEECCSSCSSCEEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccccc--ccceEEEEEeeehhHCCCEEEEEEE
Confidence            47778888888889999999999999875 433 3589999999885321111  1123469999999999999999999


Q ss_pred             cCCCCcceeeEEEEEeeCCCce
Q psy535          133 NAHGTQGSSGQMEVLVRKPPAF  154 (460)
Q Consensus       133 ~~~g~~~~~~~~~v~v~~~p~~  154 (460)
                      |..|....+.  .+.+..|+.+
T Consensus        81 n~~g~~~~~~--~~~~s~p~~L  100 (103)
T d1iama1          81 LDLRPQGLEL--FENTSAPYQL  100 (103)
T ss_dssp             EECGGGTSCE--EEEECCCEEC
T ss_pred             eCCCCccCeE--eeeEcCCCEE
Confidence            9988764443  3444555443

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.4e-12  Score=93.90  Aligned_cols=94  Identities=18%  Similarity=0.357  Sum_probs=69.8

Q ss_pred             CCCCCcceEEEeecceEEEEecCCCCC------CccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeee
Q psy535          342 KPGPPRNVSVTEVNNGFVISWQPPLER------ASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLP  414 (460)
Q Consensus       342 ~P~~p~~~~~~~~~~~v~l~W~~~~~~------~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (460)
                      .|.||.+|++....+++.|+|++|...      ...+..|.|+|+..+. |...                        . 
T Consensus         5 kP~pP~nl~v~~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~------------------------~-   59 (114)
T d2gysa2           5 QPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDA------------------------A-   59 (114)
T ss_dssp             CCCCCEEEEEEEETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTC------------------------E-
T ss_pred             cCCcCCCeEEEEeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEE------------------------E-
Confidence            589999999987678999999998643      2356789999998654 1100                        0 


Q ss_pred             eccCCCCcceEEECCCCcCceEEEEEEEeecCCC------CCCCceeEeecC
Q psy535          415 IPVTPPGSTQITINRLTPATTYEFQVVGKNELGD------GMLSNIVVVKTK  460 (460)
Q Consensus       415 ~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~------s~~s~~~~~~T~  460 (460)
                      ........+.+.+.+|.|++.|.|||+|.|..|.      |+||+++.++|+
T Consensus        60 ~~~~~~~~~~~~~~~L~p~t~Y~~rVRa~~~~g~~~~g~wS~WS~~v~~~t~  111 (114)
T d2gysa2          60 ILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQ  111 (114)
T ss_dssp             EEEESSSEEEECTTTCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECC
T ss_pred             EeeccCceEEEEeCCCCCCcEEEEEEEEEeCCCCCCCCCccCCcCCEeeeCc
Confidence            0011134567888999999999999999999885      678888999885

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=7.1e-13  Score=90.49  Aligned_cols=82  Identities=23%  Similarity=0.379  Sum_probs=63.6

Q ss_pred             CCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535          344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS  422 (460)
Q Consensus       344 ~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (460)
                      .||.++++...+ +++.|+|++|.   +.+.+|+|+|+..+.-                         .|......+.+.
T Consensus         2 d~P~~l~v~~vt~~sv~l~W~~p~---~~~~~Y~i~~~~~~~~-------------------------~~~~~~~v~~~~   53 (89)
T d1fnfa3           2 DSPTGIDFSDITANSFTVHWIAPR---ATITGYRIRHHPEHFS-------------------------GRPREDRVPHSR   53 (89)
T ss_dssp             CCCEEEEEESCCSSEEEEEEECCS---SCCSEEEEEEECSCCS-------------------------SCCEEEEEETTC
T ss_pred             ccCcCCEEEEecCCEEEEEEEeCC---CEEeeEEEEEEECCCC-------------------------CceEEEEECCCc
Confidence            478999999887 69999999883   5688999999865420                         011111223567


Q ss_pred             ceEEECCCCcCceEEEEEEEeecCCCCCCCc
Q psy535          423 TQITINRLTPATTYEFQVVGKNELGDGMLSN  453 (460)
Q Consensus       423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~  453 (460)
                      +++.|.+|.|++.|.|+|.|+|..|.|++..
T Consensus        54 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~p~~   84 (89)
T d1fnfa3          54 NSITLTNLTPGTEYVVSIVALNGREESPLLI   84 (89)
T ss_dssp             CEEEEESCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             cEEEECCCcccCEEEEEEEEEcCCcCcCCEE
Confidence            8999999999999999999999999887653

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.38  E-value=5.4e-13  Score=89.73  Aligned_cols=71  Identities=15%  Similarity=0.279  Sum_probs=59.2

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      .+.+.|....+.+|++++|.|.+.+.+.+..+.|++||..+..         .++.|.|.++..+|+|.|+|.+.|..++
T Consensus         6 ~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~---------~~~~l~i~~v~~~dsG~Y~C~a~ns~~S   76 (85)
T d2fcba1           6 VLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT---------HTQPSYRFKANNNDSGEYTCQTGQTSLS   76 (85)
T ss_dssp             EEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTT---------CCSSEEEEECCGGGCEEEEEECTTSBCC
T ss_pred             EEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccc---------cccceEEeeccccCCcEEEEECCCCccc
Confidence            4566777788899999999999999887767999999998753         2356999999999999999999875443

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.6e-12  Score=89.43  Aligned_cols=94  Identities=19%  Similarity=0.213  Sum_probs=69.7

Q ss_pred             CCCCCcceEEEeec--ceEEEEecCCCCC-CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccC
Q psy535          342 KPGPPRNVSVTEVN--NGFVISWQPPLER-ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVT  418 (460)
Q Consensus       342 ~P~~p~~~~~~~~~--~~v~l~W~~~~~~-~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (460)
                      .|.||.++.+....  ..+.|.|.+|... +..+..|+|+|+..+..                         .|......
T Consensus         4 k~dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~-------------------------~~~~~~~~   58 (105)
T d1erna2           4 LLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGA-------------------------GSVQRVEI   58 (105)
T ss_dssp             CCCCCEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CC-------------------------CEEEEEEE
T ss_pred             ccCCCCCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCC-------------------------CceEEEee
Confidence            48999999998765  3699999987644 56788999999976531                         01111122


Q ss_pred             CCCcceEEECCCCcCceEEEEEEEeecC----C-CCCCCceeEeecC
Q psy535          419 PPGSTQITINRLTPATTYEFQVVGKNEL----G-DGMLSNIVVVKTK  460 (460)
Q Consensus       419 ~~~~~~~~i~~L~p~~~Y~~~v~a~n~~----G-~s~~s~~~~~~T~  460 (460)
                      ....+++.|.+|.|++.|.|+|+|.+..    | +|+||.++.+.|+
T Consensus        59 ~~~~t~~~i~~L~p~t~Y~~rVRar~~~~~~~G~WSeWS~~v~~~tP  105 (105)
T d1erna2          59 LEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSEPVSLLTP  105 (105)
T ss_dssp             CTTCCEEEECSCCSSCEEEEEEEEEECSSSCCBCCCCCCCCEEEECC
T ss_pred             cCCccEEEEeCCCCCcEEEEEEEEEECCCCCCCCCCCCCCCEEeeCc
Confidence            2456789999999999999999999653    3 3778888999885

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.38  E-value=2.2e-12  Score=87.52  Aligned_cols=85  Identities=18%  Similarity=0.361  Sum_probs=66.6

Q ss_pred             CCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535          344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS  422 (460)
Q Consensus       344 ~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (460)
                      .+|.++++...+ +++.|+|++|.   +.+.+|.|+|+..+...                        .+.   ..+.+.
T Consensus         1 DaP~~l~v~~~t~~sv~v~W~~p~---~~~~~Y~v~~~~~~~~~------------------------~~~---~~~~~~   50 (87)
T d1qr4a1           1 DNPKDLEVSDPTETTLSLRWRRPV---AKFDRYRLTYVSPSGKK------------------------NEM---EIPVDS   50 (87)
T ss_dssp             CCCEEEEEESCCSSEEEEEEECCS---SCCSEEEEEEECTTCCE------------------------EEE---EECTTC
T ss_pred             CcCcCcEEEEecCCEEEEEEECCC---CCcceeEEEeecCCcce------------------------eEE---eCCCCc
Confidence            378999999887 69999999984   56889999999755311                        111   123467


Q ss_pred             ceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          423 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      +.++|.+|.|++.|.|+|.|+|..|.|+++ .+.++|
T Consensus        51 ~~~~~~~L~p~t~Y~v~V~a~~~~~~s~~~-~~~~~T   86 (87)
T d1qr4a1          51 TSFILRGLDAGTEYTISLVAEKGRHKSKPT-TIKGST   86 (87)
T ss_dssp             SEEEEESCCSSCEEEEEEEEESSSCBCCCE-EEEEEC
T ss_pred             CEEEECCCCcCCEEEEEEEEEcCCCCccCE-EEEEEc
Confidence            899999999999999999999999999877 455665

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.3e-12  Score=89.00  Aligned_cols=72  Identities=13%  Similarity=0.164  Sum_probs=57.8

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEc
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      ...+.+..+.+|+++.|.|.+. .|.+ .+.|++++.++......++....++   +|.|.++..+|+|.|+|.|.|
T Consensus         4 ~~~l~~~~v~~G~~v~l~C~v~-~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   78 (90)
T d1x44a1           4 TKQLEDTTAYCGERVELECEVS-EDDA-NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   78 (90)
T ss_dssp             SBCCCCEEEETTEEEEEEEECS-SSSC-CCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             EcCCCCEEEeCCCcEEEEEEEC-CCCc-eEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec
Confidence            3456778889999999999984 4554 6999999999876555555555443   699999999999999999965

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.38  E-value=7.5e-13  Score=91.88  Aligned_cols=88  Identities=23%  Similarity=0.340  Sum_probs=70.6

Q ss_pred             CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cceEEEccccceeceEEEEEEe
Q psy535          152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVS  227 (460)
Q Consensus       152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~  227 (460)
                      |.|...|... .+..|+.+.|.|.+   .|.|.|.+.|++++..+....++.+.    ...|.|.++...|.|.|+|.|.
T Consensus         2 P~f~~~p~~~-~v~~G~~~~l~C~~---~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   77 (97)
T d1koaa1           2 PRFIVKPYGT-EVGEGQSANFYCRV---IASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK   77 (97)
T ss_dssp             CEEEECCCCC-EEETTSCEEEEEEE---ECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEE
T ss_pred             CEEEEeCCCE-EEeCCCcEEEEEEE---EEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEE
Confidence            5666677766 68899999999999   79999999999965544444443332    1259999999999999999999


Q ss_pred             cccceeeeeeEEEEec
Q psy535          228 NEVATIVQAAQLVVEG  243 (460)
Q Consensus       228 n~~g~~~~~~~l~v~~  243 (460)
                      |..|.....+.|.|..
T Consensus        78 N~~G~~~~~~~l~V~~   93 (97)
T d1koaa1          78 NSYGTKEEIVFLNVTR   93 (97)
T ss_dssp             ETTEEEEEEECCEEEC
T ss_pred             ECCCEEEEEEEEEEee
Confidence            9999998888888864

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.5e-13  Score=95.30  Aligned_cols=92  Identities=14%  Similarity=0.148  Sum_probs=65.7

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCC--CCeEEEeeCCeecCcc-ccccEEEee---------cCeEEEeecCCCCCeE
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPT--FQYVTWTKDKRLLEPY-QTKDIVVMQ---------NGSLLFTRVNQNHQGR  126 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~~~~~~~-~~~~~~~~~---------~~~l~i~~~~~~d~G~  126 (460)
                      |...|.+..+.+|++++|.|.+.|.|.  .+.|.|+|++...... ...++....         ...|.|.+++.+|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            455788889999999999999999874  2489999987543211 112221111         1259999999999999


Q ss_pred             EEEEEEcCCCCcceeeEEEEEeeCCC
Q psy535          127 YTCTPYNAHGTQGSSGQMEVLVRKPP  152 (460)
Q Consensus       127 y~C~~~~~~g~~~~~~~~~v~v~~~p  152 (460)
                      |+|.|.|..|.......|  .|..++
T Consensus        83 Y~C~a~N~~G~~~~~~~L--~V~~~~  106 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDL--EVHEST  106 (113)
T ss_dssp             EEEEEECSSCEEEECCEE--EEECCC
T ss_pred             EEEEEEeCCCEEEEEEEE--EEEcCC
Confidence            999999999986555444  444443

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.4e-12  Score=89.21  Aligned_cols=86  Identities=21%  Similarity=0.310  Sum_probs=66.1

Q ss_pred             CCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCcc
Q psy535          345 PPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGST  423 (460)
Q Consensus       345 ~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (460)
                      ||.++.+...+ +++.|+|++|   .+.+.+|.|+|+.....                         .|..........+
T Consensus         2 pP~~l~~~~v~~~si~l~W~~p---~~~~~~~~i~~~~~~~~-------------------------~~~~~~~~~~~~~   53 (90)
T d1fnha1           2 APTDLKFTQVTPTSLSAQWTPP---NVQLTGYRVRVTPKEKT-------------------------GPMKEINLAPDSS   53 (90)
T ss_dssp             CCEEEEEEEECSSCEEEEEECC---SSCCSEEEEEEEESSSC-------------------------SCCCEEEECTTCC
T ss_pred             CCCCEEEEEecCCEEEEEEEcc---ceeccceEEEEEeeeCC-------------------------CceEEEEeCCCCe
Confidence            68899999887 5999999987   45678899999865420                         0111112235678


Q ss_pred             eEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          424 QITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       424 ~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      +++|.+|.|++.|.|+|+|.|..|.|+++... +.|
T Consensus        54 ~~~i~~L~p~t~Y~~~V~a~n~~g~s~~~~~~-~~T   88 (90)
T d1fnha1          54 SVVVSGLMVATKYEVSVYALKDTLTSRPAQGV-VTT   88 (90)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTEECCCEEEE-EEC
T ss_pred             EEEEecccCceEEEEEEEEEeCCCCcCCEeEE-EEc
Confidence            99999999999999999999999999988654 444

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.37  E-value=6.1e-13  Score=89.15  Aligned_cols=71  Identities=18%  Similarity=0.285  Sum_probs=58.9

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      |.+.+.|....+.+|++++|.|.+.+.+.+..+.|++++..+..         ...+|.|.++..+|+|.|+|+|.+...
T Consensus         6 pvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~a~~s~~   76 (84)
T d1fnla1           6 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS---------QASSYFIDAATVNDSGEYRCQTNLSTL   76 (84)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES---------SCSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred             CEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee---------cceeeEecCCcccCCEEEEEEccCCCc
Confidence            45667788888999999999999999888766888999887642         345799999999999999999976543

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.2e-14  Score=103.75  Aligned_cols=96  Identities=20%  Similarity=0.400  Sum_probs=73.8

Q ss_pred             EEEecCCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeec-------CeEEEeecCCCC
Q psy535           51 LNVEFPAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN-------GSLLFTRVNQNH  123 (460)
Q Consensus        51 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~~d  123 (460)
                      |+|..||.+. .+....+.+|+.+.|.|.+.+.++++.+.|++++..+......++.+...       ..|.|.++..+|
T Consensus         2 L~V~~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D   80 (115)
T d2crya1           2 LTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD   80 (115)
T ss_dssp             CCCCSSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred             eEEecCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhc
Confidence            5677888775 45567788999999999999977766899999999887654444443322       259999999999


Q ss_pred             -CeEEEEEEEcCCCCcceeeEEEEEee
Q psy535          124 -QGRYTCTPYNAHGTQGSSGQMEVLVR  149 (460)
Q Consensus       124 -~G~y~C~~~~~~g~~~~~~~~~v~v~  149 (460)
                       +|.|+|.|.|..|..  +..+.|.|.
T Consensus        81 ~~G~Y~C~A~N~~G~~--~~~~~L~V~  105 (115)
T d2crya1          81 FQTIYNCTAWNSFGSD--TEIIRLKEQ  105 (115)
T ss_dssp             HHSCEEEEEECSSCEE--EEEECCCCS
T ss_pred             CCeEEEEEEEECCCeE--EEEEEEEEE
Confidence             799999999999985  444555554

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.3e-13  Score=90.02  Aligned_cols=72  Identities=18%  Similarity=0.277  Sum_probs=57.3

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      |.+.+.|....+.+|++++|.|.+.+.|.+..+.|++++..+..         .+..|.|.+++.+|+|.|+|.|.|..+
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~i~~v~~~d~G~Y~C~a~~s~~   72 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE---------TNSSLNIVNAKFEDSGEYKCQHQQVNE   72 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC---------CSSEEEECSCCGGGCEEEEEECTTSSC
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec---------ccceeEECCCChhhCCcEEEEecCCCC
Confidence            66778888888999999999999999887766888999988752         345699999999999999999977544


Q ss_pred             C
Q psy535          137 T  137 (460)
Q Consensus       137 ~  137 (460)
                      .
T Consensus        73 S   73 (82)
T d1f2qa1          73 S   73 (82)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.8e-12  Score=86.94  Aligned_cols=82  Identities=21%  Similarity=0.284  Sum_probs=64.0

Q ss_pred             CCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeee
Q psy535          157 KPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQA  236 (460)
Q Consensus       157 ~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  236 (460)
                      .|.....+..|+++.|.|.+.  .+.|.+.+.|++.+.. +.........+.|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus         8 ~p~~~~~~~~G~~~~l~C~~~--~g~p~p~v~W~~~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s   84 (90)
T d1gsma1           8 PPEPVVAVALGASRQLTCRLA--CADRGASVQWRGLDTS-LGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT   84 (90)
T ss_dssp             SCCSEEEEETTCCEEEEEEEC--CSSTTCEEEEESSTTT-TCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCCCeEEEEeCCcEEEEEEec--CCCCccEEEEEEeeee-eeeeeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEE
Confidence            343334678999999999873  5788999999985543 3333333335679999999999999999999999998888


Q ss_pred             eEEEE
Q psy535          237 AQLVV  241 (460)
Q Consensus       237 ~~l~v  241 (460)
                      +.|.|
T Consensus        85 ~~l~V   89 (90)
T d1gsma1          85 VQLLV   89 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88876

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.4e-13  Score=96.37  Aligned_cols=87  Identities=17%  Similarity=0.247  Sum_probs=64.7

Q ss_pred             EcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccc---------cccEEEeecCeEEEeecCCCCCeEEEEEE
Q psy535           61 FTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQ---------TKDIVVMQNGSLLFTRVNQNHQGRYTCTP  131 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~---------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  131 (460)
                      ..+....+.+|++++|.|.+.|.|.+ .+.|++++..+....         ........+++|.|.++..+|+|.|+|.|
T Consensus         9 ~~~~~v~v~~g~~v~L~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   87 (105)
T d1nbqa1           9 SSEPEVRIPENNPVKLSCAYSGFSSP-RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMV   87 (105)
T ss_dssp             CSCSBCCEETTCCCEEECEEESCSSE-EEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEE
T ss_pred             CCCCeEEEeCCCeEEEEEEeCCCCCC-eeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEE
Confidence            34455668889999999999998876 799999765432111         11112234568999999999999999999


Q ss_pred             EcCCCCcceeeEEEEEe
Q psy535          132 YNAHGTQGSSGQMEVLV  148 (460)
Q Consensus       132 ~~~~g~~~~~~~~~v~v  148 (460)
                      .|..|.......++|.|
T Consensus        88 ~n~~G~~~~~~~v~v~V  104 (105)
T d1nbqa1          88 SEEGGNSYGEVKVKLIV  104 (105)
T ss_dssp             EETTSSCEECCEEECCE
T ss_pred             EECCCCEEEEEEEEEEE
Confidence            99999987666666654

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.3e-12  Score=87.98  Aligned_cols=87  Identities=21%  Similarity=0.287  Sum_probs=66.6

Q ss_pred             CCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCC
Q psy535          343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG  421 (460)
Q Consensus       343 P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (460)
                      ..||.++++...+ +++.|+|++|.   +++.+|.|+|+..+..                         .|. .......
T Consensus         2 ~spP~~l~v~~~~~~si~v~W~~p~---~~~~~Y~i~~~~~~~~-------------------------~~~-~~~~~~~   52 (90)
T d1fnha2           2 VSPPRRARVTDATETTITISWRTKT---ETITGFQVDAVPANGQ-------------------------TPI-QRTIKPD   52 (90)
T ss_dssp             CCCCEEEEEEEECSSEEEEEEECCS---SCCCCEEEEEEESSSS-------------------------CCE-EEECCTT
T ss_pred             cCcCCCCEEEEecCCEEEEEEECCC---CCCceeEEEEEEccCC-------------------------ceE-EEecCCC
Confidence            3689999999887 59999999873   5789999999975430                         011 1112356


Q ss_pred             cceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       422 ~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      .+.+.|.+|.|++.|.|+|.|+|..|.|++.. +.++|
T Consensus        53 ~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~p~~-~~~~T   89 (90)
T d1fnha2          53 VRSYTITGLQPGTDYKIYLYTLNDNARSSPVV-IDAST   89 (90)
T ss_dssp             CSEEEEESCCTTCEEEEEEEEEETTEECCCEE-EEEEC
T ss_pred             ccEEEeCCCCCCcEEEEEEEEEeCCCCcCCEE-EEEEC
Confidence            78999999999999999999999999987553 44444

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2e-12  Score=88.91  Aligned_cols=84  Identities=17%  Similarity=0.232  Sum_probs=62.8

Q ss_pred             CCCCcceEEEeec-c-eEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          343 PGPPRNVSVTEVN-N-GFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       343 P~~p~~~~~~~~~-~-~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      +.||.++++.... + .+.|+|++|.  +..+.+|+|+|+..+.-.                        ..........
T Consensus         2 ~~PP~~l~v~~~~~ts~i~v~W~~p~--~~~i~~Y~v~y~~~~~~~------------------------~~~~~~~~~~   55 (94)
T d1fnfa1           2 LSPPTNLHLEANPDTGVLTVSWERST--TPDITGYRITTTPTNGQQ------------------------GNSLEEVVHA   55 (94)
T ss_dssp             CCCCEEEEEEECSSSSCEEEEEECCS--CSSCCEEEEEEEETTTCS------------------------SCCEEEEECT
T ss_pred             CCcCcCcEEEEecCCCEEEEEeeCCC--CCCeeEEEEEEEEecccC------------------------ceEEEEEeCC
Confidence            5799999998765 3 5999999884  335899999999754200                        0001112235


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCCCCCC
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGDGMLS  452 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s  452 (460)
                      +.+++.|.+|.|++.|.|+|.|+|..|.|.+.
T Consensus        56 ~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~p~   87 (94)
T d1fnfa1          56 DQSSCTFDNLSPGLEYNVSVYTVKDDKESVPI   87 (94)
T ss_dssp             TCCEEECCCCCTTSCEEEEEEEEETTEECCCE
T ss_pred             CccEEEECCCCCCCEEEEEEEEEcCCCEeCCE
Confidence            67899999999999999999999999988654

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.2e-12  Score=87.94  Aligned_cols=85  Identities=21%  Similarity=0.317  Sum_probs=66.4

Q ss_pred             CCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535          344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS  422 (460)
Q Consensus       344 ~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (460)
                      .+|.++++...+ +++.|+|++|.   +.+.+|.|+|+..+.                        ...+.   ....+.
T Consensus         3 ~~P~~l~~~~~~~~sv~l~W~~p~---~~~~~Y~v~~~~~~~------------------------~~~~~---~~~~~~   52 (93)
T d2cuma1           3 EAPRDLEAKEVTPRTALLTWTEPP---VRPAGYLLSFHTPGG------------------------QTQEI---LLPGGI   52 (93)
T ss_dssp             CCCEEEEEESCCSSCEEEEEECCS---SCCSEEEEEEECTTS------------------------CEEEE---EECSSC
T ss_pred             CcCCCCEEEEeCCCEEEEEEEccc---cccccEEEEEEcccc------------------------ccEEE---EECCCc
Confidence            578899998877 69999999873   568999999987543                        00111   123567


Q ss_pred             ceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          423 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      +++.|.+|.|++.|.|+|.|.|..|.|+++. ..+.|
T Consensus        53 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~-~~~tT   88 (93)
T d2cuma1          53 TSHQLLGLFPSTSYNARLQAMWGQSLLPPVS-TSFTT   88 (93)
T ss_dssp             SEEEECSCCTTCEEEEEEEEEBTTBCCCCEE-EEEEC
T ss_pred             cEEEEeCccCCCEEEEEEEEEeCCCCCCCEE-EEEEe
Confidence            8999999999999999999999999998875 44554

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.35  E-value=2.8e-12  Score=87.11  Aligned_cols=86  Identities=20%  Similarity=0.404  Sum_probs=65.7

Q ss_pred             CCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535          344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS  422 (460)
Q Consensus       344 ~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (460)
                      ++|.++++...+ +++.|+|++|   .+++.+|.|+|+..+...                         |... ......
T Consensus         2 ~~P~~l~v~~v~~~s~~l~W~~~---~~~~~~Y~i~~~~~~~~~-------------------------~~~~-~~~~~~   52 (88)
T d1qr4a2           2 GSPKGISFSDITENSATVSWTPP---RSRVDSYRVSYVPITGGT-------------------------PNVV-TVDGSK   52 (88)
T ss_dssp             CCCSCEEEESCCSSCEEEEECCC---SSCCSEEEEEEEETTCCC-------------------------CEEE-EEETTC
T ss_pred             cCCcceEEEEecCCEEEEEEEcc---cEeeceEEEEEEeccCCc-------------------------eEEE-EecCCc
Confidence            478999999887 5999999987   457899999999765310                         1111 112466


Q ss_pred             ceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          423 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      +++.|.+|.|++.|.|+|.|+|..|.|++. ...++|
T Consensus        53 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~p~-~~~~~T   88 (88)
T d1qr4a2          53 TRTKLVKLVPGVDYNVNIISVKGFEESEPI-SGILKT   88 (88)
T ss_dssp             CEEEECSCCSSCEEEEEEEEEETTEECCCE-EEEEEC
T ss_pred             cEEEECCCCCCCEEEEEEEEEeCCCCcCCE-EEEEEC
Confidence            899999999999999999999999999775 334443

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.35  E-value=1.9e-12  Score=90.76  Aligned_cols=88  Identities=25%  Similarity=0.403  Sum_probs=71.7

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe-----cceEEEccccceeceEEEEE
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV-----GGNITIEGLRRVDFGYYECV  225 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~~g~y~C~  225 (460)
                      +|.|...+... .+..|+.+.|.|.+   .|.|.|.+.|++++..+....+..+.     ...|.|.++...|.|.|+|.
T Consensus         8 ~P~f~~~~~~~-~v~~G~~~~l~C~~---~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   83 (102)
T d1fhga_           8 KPYFTKTILDM-EVVEGSAARFDCKV---EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK   83 (102)
T ss_dssp             EEEEEECCCCE-EEETTSCEEEEEEE---EEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEcCCCcE-EEecCCcEEEEEEE---EeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEE
Confidence            46666667665 68899999999999   78999999999966555555555542     23699999999999999999


Q ss_pred             EecccceeeeeeEEEEe
Q psy535          226 VSNEVATIVQAAQLVVE  242 (460)
Q Consensus       226 a~n~~g~~~~~~~l~v~  242 (460)
                      |.|..|....+..|.|.
T Consensus        84 a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          84 AVNSLGEATCTAELLVE  100 (102)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEECCcEEEEEEEEEEE
Confidence            99999999998888875

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.2e-12  Score=90.86  Aligned_cols=81  Identities=22%  Similarity=0.284  Sum_probs=61.7

Q ss_pred             eeecceeeEEEEE------EEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535           66 QYLPFRLQGVVQC------HIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        66 ~~~~~g~~~~l~C------~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                      +.++.|....|.|      .+.+.|.| .|.|++||.++..  ........++.|.|.++..+|+|.|+|.|.|..+...
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P-~i~W~kdg~~l~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELP-KLQWYKDCKPLLL--DNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCC-CCEEEETTEECCC--CSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCC-EEEEEECCccccC--CCcEEEecCCEEEEcccccccCcEEEEEEEECcCCEE
Confidence            4577899999999      45676665 7999999999874  2334556678899999999999999999998776543


Q ss_pred             e--eeEEEEEee
Q psy535          140 S--SGQMEVLVR  149 (460)
Q Consensus       140 ~--~~~~~v~v~  149 (460)
                      .  +..++|.+.
T Consensus        86 ~~vt~~i~~~v~   97 (103)
T d1iray2          86 YPITRVIEFITL   97 (103)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             EEEEEEEEEEEC
Confidence            3  344444443

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.9e-12  Score=89.68  Aligned_cols=81  Identities=14%  Similarity=0.105  Sum_probs=57.1

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecCccccccEEEee---cCeEEEeecCCCCCeEEEEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLEPYQTKDIVVMQ---NGSLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~  130 (460)
                      .|.|. .+.+..+.+|+++.|.|.+.|.|.+....|+.  ++..+.  .........   .++|.|.++..+|+|.|+|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   78 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP--LKEIKVTSSRRFIASFNVVNTTKRDAGKYRCM   78 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCC--EEEEEEEETTEEEEEEEECSCCGGGCSEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeec--CCceeEEEeecCceEEEECCCCHHHCeEEEEE
Confidence            46775 57888999999999999999988764333332  333222  111111111   24699999999999999999


Q ss_pred             EEcCCCCcc
Q psy535          131 PYNAHGTQG  139 (460)
Q Consensus       131 ~~~~~g~~~  139 (460)
                      |.|..|...
T Consensus        79 a~N~~G~~~   87 (96)
T d2c9aa1          79 IRTEGGVGI   87 (96)
T ss_dssp             EEETTEEEE
T ss_pred             EEeCCCeEE
Confidence            999999763

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.5e-13  Score=99.03  Aligned_cols=96  Identities=21%  Similarity=0.330  Sum_probs=68.3

Q ss_pred             EEccC-CCCCCCcceEEEe-ec-ceEEEEecCCCC------CCccceEEEEEEEEcCCeeeeccccCCCCccccccccee
Q psy535          336 VKTKG-PKPGPPRNVSVTE-VN-NGFVISWQPPLE------RASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYRE  406 (460)
Q Consensus       336 ~~~~~-~~P~~p~~~~~~~-~~-~~v~l~W~~~~~------~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (460)
                      ++|.. .+|.+|.++++.. .+ +++.|+|++|..      .++.+.+|.+++...                        
T Consensus         3 ~~T~~~~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~~~------------------------   58 (117)
T d2cspa1           3 FSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQ------------------------   58 (117)
T ss_dssp             CCCCCCCCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESSSS------------------------
T ss_pred             EEeCCCCCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEeecc------------------------
Confidence            33443 4568999999865 34 489999999743      234566666643211                        


Q ss_pred             cCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          407 QGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                          .+..+.....+.+.+.|.+|.+++.|.|+|+|+|..|.|++|.++.++|
T Consensus        59 ----~~~~~~~~~~~~~~~~i~~L~~~t~Y~v~V~A~n~~G~s~~S~~v~i~t  107 (117)
T d2cspa1          59 ----RVAEVIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPP  107 (117)
T ss_dssp             ----EEEEECCTTCSEEEEESHHHHHHTCSCBEEEEEESSCCCCCCSCBCCCH
T ss_pred             ----cceeeeeeccceeeeeccCCCCCcEEEEEEEEEcCCCcCCCCCCEEeeC
Confidence                1111222334567888999999999999999999999999999988776

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.4e-12  Score=87.01  Aligned_cols=77  Identities=17%  Similarity=0.349  Sum_probs=63.0

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-ecceEEEccccceeceEEEEEEecccceeeeeeEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-VGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      .+..|+.+.|.|.+   .|.|.|.+.|+++++.......... ..+.|.|.++..+|.|.|+|.|.|..|..+.++.|.|
T Consensus        12 ~~~~G~~v~l~C~~---~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V   88 (90)
T d1vcaa2          12 LAQIGDSVSLTCST---TGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI   88 (90)
T ss_dssp             EEETTSCEEEEEEE---ESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEec---cCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEE
Confidence            56789999999999   7999999999986665543322221 2457999999999999999999999999998888876


Q ss_pred             e
Q psy535          242 E  242 (460)
Q Consensus       242 ~  242 (460)
                      .
T Consensus        89 ~   89 (90)
T d1vcaa2          89 Y   89 (90)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.6e-12  Score=90.15  Aligned_cols=86  Identities=20%  Similarity=0.306  Sum_probs=67.2

Q ss_pred             CCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCC
Q psy535          343 PGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPG  421 (460)
Q Consensus       343 P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (460)
                      |.+|.++.+...+ +++.|+|++|.   +.+.+|.|+|+..+...                         |..  ....+
T Consensus         1 P~~P~~l~~~~~t~~si~l~W~~p~---~~i~~Y~v~~~~~~~~~-------------------------~~~--~~~~~   50 (102)
T d2cuha1           1 PDGPTQLRALNLTEGFAVLHWKPPQ---NPVDTYDIQVTAPGAPP-------------------------LQA--ETPGS   50 (102)
T ss_dssp             CSSCEEEECCCCSSSCEEEEEECCS---SCCSEEEEEEECSSSCC-------------------------EEE--EEETT
T ss_pred             CcCCCccEEEEeCCCEEEEEEEeee---ccceeeEEEEEeccccc-------------------------eee--eeeee
Confidence            6789999998887 69999999873   56899999998754310                         110  11246


Q ss_pred             cceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          422 STQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       422 ~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      .++++|.+|.|++.|.|+|.|+|..|.|+++. +.++|
T Consensus        51 ~~~~~l~~L~p~t~Y~~~V~a~~~~~~s~~~~-~~~~T   87 (102)
T d2cuha1          51 AVDYPLHDLVLHTNYTATVRGLRGPNLTSPAS-ITFTT   87 (102)
T ss_dssp             CSEEEECSCCSSSEEEEEEEEEETTEECCCEE-EEEES
T ss_pred             eeeEEEccEEeeEEEEEEEEEEeCCCCcCCEE-EEEEC
Confidence            78999999999999999999999999987764 45555

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=9.4e-13  Score=91.51  Aligned_cols=86  Identities=15%  Similarity=0.180  Sum_probs=63.9

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccc-cccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcce
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQ-TKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGS  140 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~  140 (460)
                      .|......+|+.+.|.|.+...++.+.|+|+|++..+.... ........+++|.|.+++.+|+|.|+|.|.|..|....
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~   87 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRI   87 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEE
Confidence            34556677899999999886544455899999887654222 22223345678999999999999999999999988766


Q ss_pred             eeEEEEE
Q psy535          141 SGQMEVL  147 (460)
Q Consensus       141 ~~~~~v~  147 (460)
                      +..++|.
T Consensus        88 ~~~L~V~   94 (101)
T d1iray1          88 KISAKFV   94 (101)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6555554

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.33  E-value=2.7e-12  Score=89.22  Aligned_cols=89  Identities=13%  Similarity=0.173  Sum_probs=70.7

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE---ecc--eEEEccccceeceEEEEE
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI---VGG--NITIEGLRRVDFGYYECV  225 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~---~~~--~l~i~~~~~~~~g~y~C~  225 (460)
                      +|.+...+... .+..|+.+.|.|.+   .|.|.|.+.|++++..+....+...   .++  .|.|.++...|.|.|+|.
T Consensus         4 aP~f~~~~~~~-~v~~g~~v~l~c~v---~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~   79 (98)
T d1g1ca_           4 APKIFERIQSQ-TVGQGSDAHFRVRV---VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVK   79 (98)
T ss_dssp             EEEEEECCCCE-EEETTSCEEEEEEE---EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCeEecCCCcE-EEcCCCcEEEEEEE---EEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEE
Confidence            45666666665 68899999999999   7899999999996554444444332   222  699999999999999999


Q ss_pred             EecccceeeeeeEEEEec
Q psy535          226 VSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       226 a~n~~g~~~~~~~l~v~~  243 (460)
                      |.|..|.......|.|..
T Consensus        80 a~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          80 AINIAGETSSHAFLLVQA   97 (98)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCcEEEEEEEEEEEE
Confidence            999999998888888863

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=5e-12  Score=85.38  Aligned_cols=82  Identities=18%  Similarity=0.365  Sum_probs=64.7

Q ss_pred             CCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535          344 GPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS  422 (460)
Q Consensus       344 ~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (460)
                      .+|.++++...+ +++.|+|++|   .+.+.+|.|+|+..+...                        .+..   .....
T Consensus         2 ~~P~nl~v~~~~~~s~~l~W~~p---~~~~~~Y~v~~~~~~~~~------------------------~~~~---~~~~~   51 (86)
T d1tdqa3           2 DSPRDLMVTASSETSISLIWTKA---SGPIDHYRITFTPSSGIS------------------------SEVT---VPRDR   51 (86)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECC---CSCCSEEEEEEECSSSCC------------------------EEEE---EESSC
T ss_pred             ccCCCCEEEEecCCEEEEEEeCC---CCCccceEEEEecccccc------------------------eEEE---eCCCc
Confidence            478899999887 6999999997   357889999999754310                        1111   12467


Q ss_pred             ceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535          423 TQITINRLTPATTYEFQVVGKNELGDGMLSNIV  455 (460)
Q Consensus       423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~  455 (460)
                      +++.|.+|.|++.|.|+|.|.|..|.|.++...
T Consensus        52 ~~~~~~~L~p~t~Y~v~V~a~~~~~~s~p~~~~   84 (86)
T d1tdqa3          52 TSYTLTDLEPGAEYIISITAERGRQQSLESTVD   84 (86)
T ss_dssp             SEEEECCCCTTCCEEEEEEEEETTEECCCEEEE
T ss_pred             cEEEECCCccccEEEEEEEEEcCCCEECCEEee
Confidence            899999999999999999999999999887654

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.5e-12  Score=85.52  Aligned_cols=72  Identities=18%  Similarity=0.276  Sum_probs=62.4

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                      .+..|+.++|.|.+   .|.|.|.+.|++++..      .......|.|.++...|+|.|+|.|.|..|.....+.|.|.
T Consensus        10 ~v~~G~~~~L~C~~---~g~p~P~i~W~~~~~~------~~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~   80 (84)
T d2nxyb2          10 HLLQGQSLTLTLES---PPGSSPSVQCRSPRGK------NIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL   80 (84)
T ss_dssp             CEETTCCEEEEEEC---CTTCCCEEEEECTTCC------EEEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEE
T ss_pred             EEECCCeEEEEEEe---EcCCchheEEEeeccc------ceeeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEE
Confidence            57889999999999   8999999999985543      23345679999999999999999999999999988888887


Q ss_pred             c
Q psy535          243 G  243 (460)
Q Consensus       243 ~  243 (460)
                      +
T Consensus        81 ~   81 (84)
T d2nxyb2          81 A   81 (84)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.3e-12  Score=89.61  Aligned_cols=96  Identities=14%  Similarity=0.197  Sum_probs=69.2

Q ss_pred             CCCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCC--eeeeccccCCCCcccccccceecCceeeeeecc
Q psy535          341 PKPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGS--WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPV  417 (460)
Q Consensus       341 ~~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (460)
                      ++|.+|.++++...+ +++.|+|++|   .+++.+|.|+|+..+.  +....                  ....+. ...
T Consensus         2 g~Pp~~~~l~v~~~t~~sv~v~W~pp---~~~~~~y~i~~~~~~~~~~~~~~------------------~~~~~~-~~~   59 (101)
T d2cuia1           2 GSRPRLSQLSVTDVTTSSLRLNWEAP---PGAFDSFLLRFGVPSPSTLEPHP------------------RPLLQR-ELM   59 (101)
T ss_dssp             CCCCCCCCCEEESCCSSCEEEECCCC---TTSCSEEEEEEECCCCSSSCCCS------------------SCCCCE-EEE
T ss_pred             CCccCCCCcEEEEECCCEEEEEEEec---cccccceEEEEEecCCCceeecc------------------CCccee-Eee
Confidence            358899999999987 5999999987   4568899999987542  11000                  000011 111


Q ss_pred             CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeec
Q psy535          418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKT  459 (460)
Q Consensus       418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T  459 (460)
                      ......+++|.+|+|++.|.|+|+|+|..|.|+++ ...++|
T Consensus        60 ~~~~~~~~~v~~L~p~t~Y~~~V~a~~~~g~g~~~-~~~~~T  100 (101)
T d2cuia1          60 VPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSI-QGTART  100 (101)
T ss_dssp             EETTCCEEEECSCCTTCEEEEEEEEECSSSEEEEE-EEEEEC
T ss_pred             cccceeEEEeCCCCcCCEEEEEEEEEeCCcEeCCe-EEEeEE
Confidence            23567899999999999999999999999999776 445555

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.9e-12  Score=90.38  Aligned_cols=86  Identities=15%  Similarity=0.206  Sum_probs=61.5

Q ss_pred             eeeecceeeEE---EEEEEecCCCCCeEEEeeCCeecCccccccEEEeec--------CeEEEeecCCCCCeEEEEEEEc
Q psy535           65 VQYLPFRLQGV---VQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQN--------GSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        65 ~~~~~~g~~~~---l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--------~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      ...+..|..+.   +.|.+.|.|.+ .++|+++|.++.............        ..|.|.++..+|+|.|+|.|.|
T Consensus         6 ~~~~~~g~~~~~~ci~~~v~G~P~P-~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N   84 (107)
T d1he7a_           6 SVQLHTAVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN   84 (107)
T ss_dssp             CCCCCCCCCCCEEEEEEEECCSSCC-EEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             EeEECCCeEEEEEEEEEEEEEecCC-eEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEe
Confidence            33444454444   55689999876 799999999987533222222221        2499999999999999999999


Q ss_pred             CCCCcceeeEEEEEeeCCCc
Q psy535          134 AHGTQGSSGQMEVLVRKPPA  153 (460)
Q Consensus       134 ~~g~~~~~~~~~v~v~~~p~  153 (460)
                      ..|..  +..+.|.+..+|.
T Consensus        85 ~~G~~--~~~i~v~v~~~P~  102 (107)
T d1he7a_          85 PFGQA--SASIMAAFMDNPF  102 (107)
T ss_dssp             TTEEE--EEEEEECCCSCTT
T ss_pred             CCCEE--EEEEEEEEEcCCC
Confidence            99985  5566677777773

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.32  E-value=2e-12  Score=88.39  Aligned_cols=83  Identities=28%  Similarity=0.487  Sum_probs=66.4

Q ss_pred             eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe----cceEEEccccceeceEEEEEEecccc
Q psy535          156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV----GGNITIEGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~a~n~~g  231 (460)
                      ..|... .+..|+.+.|.|.+   .|.|.|.+.|++++..+....+..+.    ...|.|.++...|+|.|+|.|.|..|
T Consensus         4 ~~P~~~-~v~~G~~~~l~C~~---~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   79 (91)
T d1tnna_           4 TKPRSM-TVYEGESARFSCDT---DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEG   79 (91)
T ss_dssp             BCCCCE-ECSSSSCCCEEEEC---CCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSC
T ss_pred             eCCcCE-EEeCCCcEEEEEEE---EEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCC
Confidence            345554 78899999999999   79999999999966555444443332    34799999999999999999999999


Q ss_pred             eeeeeeEEEEe
Q psy535          232 TIVQAAQLVVE  242 (460)
Q Consensus       232 ~~~~~~~l~v~  242 (460)
                      .......|.|.
T Consensus        80 ~~~~~~~l~V~   90 (91)
T d1tnna_          80 KQEAEFTLTIQ   90 (91)
T ss_dssp             BCCEEEEEECC
T ss_pred             EEEEEEEEEEE
Confidence            98888777664

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.8e-13  Score=99.34  Aligned_cols=93  Identities=19%  Similarity=0.261  Sum_probs=68.3

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCCCCCCc---------cceEEEEEEEEcCCeeeeccccCCCCcccccccceecCcee
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPPLERAS---------LIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKD  411 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~---------~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (460)
                      .|..+....+..+. +++.|+|++|...++         .+.+|.++++..+..                        ..
T Consensus        17 ~~~~~~~P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~------------------------~~   72 (137)
T d1wk0a_          17 LLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKD------------------------GK   72 (137)
T ss_dssp             HTTCCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTT------------------------SC
T ss_pred             CCCCCCCCEEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCC------------------------cc
Confidence            35556666777776 699999998864322         466788888754421                        11


Q ss_pred             eeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          412 WLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       412 ~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      |..+  .....+.+.|.+|+|++.|.|+|+|.|..|.|++|+.+.|+|.
T Consensus        73 ~~~~--~~~~~~~~~i~~L~P~t~Y~f~V~A~n~~G~g~~S~~~~~~T~  119 (137)
T d1wk0a_          73 YKSV--YVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTL  119 (137)
T ss_dssp             CEEE--EEESCSEEEECSCCTTCEECEEEEEEETTEECCCCCCCCEECC
T ss_pred             EEEE--EecCccEEEECCCCCCcEEEEEEEEEcCCcccCCCCCEEEECC
Confidence            1111  1135678999999999999999999999999999999999884

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.32  E-value=6.2e-13  Score=93.60  Aligned_cols=76  Identities=12%  Similarity=0.126  Sum_probs=59.6

Q ss_pred             ceeeeecceeeEEEEEEE-ecCCCCCeEEEeeCCeecCccccccE-EEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535           63 PTVQYLPFRLQGVVQCHI-KANPTFQYVTWTKDKRLLEPYQTKDI-VVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                      +....+.+|+++.|.|.+ .+.|.+ .|.|+|++..+......++ ....+++|.|.++..+|+|.|+|.|.|..|...
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~-~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~   88 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPAL-SYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFIT   88 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCC-EEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCC-EEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEE
Confidence            345678999999999997 566655 8999999987654343433 334567899999999999999999999887653

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=7e-12  Score=88.81  Aligned_cols=96  Identities=18%  Similarity=0.206  Sum_probs=65.4

Q ss_pred             CCCCCCcceEEE-eec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeee-ecc
Q psy535          341 PKPGPPRNVSVT-EVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLP-IPV  417 (460)
Q Consensus       341 ~~P~~p~~~~~~-~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  417 (460)
                      -+|++|.++.+. ... ++++|+|+++.+++.+ ..|.+.|+......                   ......|.. ...
T Consensus         3 ~PP~~P~~v~~i~~~~~~sv~~sW~p~~d~~~~-~~y~~~y~~~~~~~-------------------~~~~~~~~~~~~~   62 (107)
T d1cd9b1           3 YPPASPSNLSCLMHLTTNSLVCQWEPGPETHLP-TSFILKSFRSRADC-------------------QYQGDTIPDCVAK   62 (107)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECCSCCSSC-CEEEEEEEECCGGG-------------------CSCCCEEEEEECC
T ss_pred             CccCCCcCCEEEEecCCCEEEEEEcCCCCCCCC-cceeEEEEEeeccc-------------------ceeeeeeeeeccc
Confidence            468999999854 444 5999999999886666 56777776543200                   000011111 122


Q ss_pred             CCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEe
Q psy535          418 TPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV  457 (460)
Q Consensus       418 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~  457 (460)
                      .....+.+.+.+|.+++.|.|||.|.|.+|.|. |+++.|
T Consensus        63 ~~~~~~~~~~~~L~~~t~Y~frV~A~N~~G~s~-S~~~~~  101 (107)
T d1cd9b1          63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSE-SPKLCL  101 (107)
T ss_dssp             TTCCEEEEEGGGCCTTSCEEEEEEEEETTEEEE-CCCEEE
T ss_pred             cCccccEEEcCCCCcCceEEEEEEEEeCCcccc-CCCEEc
Confidence            334567899999999999999999999999985 555544

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.5e-12  Score=96.49  Aligned_cols=91  Identities=19%  Similarity=0.202  Sum_probs=65.5

Q ss_pred             cCCeeE-----EcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccc---------------------------
Q psy535           55 FPAKVT-----FTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQ---------------------------  102 (460)
Q Consensus        55 ~~p~~~-----~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~---------------------------  102 (460)
                      .||.+.     ..|....+.+|++++|.|.+.|.|.+ .+.|++++..+....                           
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAP-TVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET   81 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCC-EEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSC
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCC-eEEEeeCCeEccCCccceeeecccccccceeeecCCceeecc
Confidence            466653     34667889999999999999999876 899999776543210                           


Q ss_pred             cccEEEe-ec--CeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535          103 TKDIVVM-QN--GSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus       103 ~~~~~~~-~~--~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      ..++... ..  ..|.|.++..+|+|.|+|.|.|..|....  .+.|.|
T Consensus        82 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~--~~~l~V  128 (130)
T d1gxea_          82 EGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQV--NLTVKV  128 (130)
T ss_dssp             SSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEE--EEEEEE
T ss_pred             CceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEE--EEEEEE
Confidence            1111111 11  25999999999999999999999998644  444544

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.7e-11  Score=84.90  Aligned_cols=88  Identities=26%  Similarity=0.431  Sum_probs=72.4

Q ss_pred             CCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN  323 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n  323 (460)
                      ||.+|.++.. .....+++|+|.++...+..++.+|.+.++..+...|............+.|.+|.++..|.|+|.|.|
T Consensus         1 PP~~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~~~Y~frV~A~n   80 (98)
T d1x5ya1           1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVN   80 (98)
T ss_dssp             CCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEEEE
T ss_pred             CCCCCcCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcceeEEeeeecCceeEEEECCCcCCeEEEEEEEEEC
Confidence            5778887765 456779999999887666656689999999988888877655544667899999999999999999999


Q ss_pred             CCCCCCCCC
Q psy535          324 ELGDGMLSN  332 (460)
Q Consensus       324 ~~G~~~~s~  332 (460)
                      ..|.|.+|.
T Consensus        81 ~~G~s~~s~   89 (98)
T d1x5ya1          81 IAGRSEPAT   89 (98)
T ss_dssp             TTEECCCCC
T ss_pred             CCcCCCCcC
Confidence            999887654

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.3e-11  Score=84.67  Aligned_cols=75  Identities=11%  Similarity=0.106  Sum_probs=55.1

Q ss_pred             CeeEEcc-eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC--eEEEeecCCCCCeEEEEEEEc
Q psy535           57 AKVTFTP-TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG--SLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        57 p~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      |.|.... ....+.+|+++.|.|.+.+ |++ .++|++||..+............++  .|.|.++..+|+|.|+|.|.|
T Consensus         6 ~~f~~~l~~~~~v~~G~~v~l~c~v~~-p~~-~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n   83 (94)
T d1pd6a_           6 TAFQKKLEPAYQVSKGHKIRLTVELAD-HDA-EVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   83 (94)
T ss_dssp             SSCSEECCSEEEEETTSCEEEEEECSS-SSS-CCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CcEEEeCCCCEEECcCCeEEEEEEECC-CCc-eEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee
Confidence            4444333 3456789999999999854 554 7999999999975433333333333  599999999999999999965

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.1e-11  Score=86.65  Aligned_cols=91  Identities=24%  Similarity=0.337  Sum_probs=66.6

Q ss_pred             CCCCCcceEEEeec---ceEEEEecCCCCC---CccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeee
Q psy535          342 KPGPPRNVSVTEVN---NGFVISWQPPLER---ASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI  415 (460)
Q Consensus       342 ~P~~p~~~~~~~~~---~~v~l~W~~~~~~---~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (460)
                      .|.||.++++....   ++|.|+|++|...   ......|.++|+..+.                         ..|..+
T Consensus         7 kP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~-------------------------~~~~~~   61 (109)
T d1uc6a_           7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLIL-------------------------DQWQHV   61 (109)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSS-------------------------CCCCCE
T ss_pred             ECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCC-------------------------CceEEe
Confidence            48999999987642   5899999998542   3456789999987553                         112211


Q ss_pred             ccCCCCcceEEECCCCcCceEEEEEEEeecCC--CCCCCceeEeec
Q psy535          416 PVTPPGSTQITINRLTPATTYEFQVVGKNELG--DGMLSNIVVVKT  459 (460)
Q Consensus       416 ~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G--~s~~s~~~~~~T  459 (460)
                      .  ....+.+.|.+|.+++.|.|||+|.|..+  +|+||.++.+.|
T Consensus        62 ~--~~~~~~~~i~~L~~~t~Y~~rVrA~~~~~g~wS~WS~~~~~tt  105 (109)
T d1uc6a_          62 E--LSNGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHATP  105 (109)
T ss_dssp             E--ESSCSEEEETTCCSSSCEEEEEECCBSSSCCCCCCCEEEEECC
T ss_pred             c--cCCceeEEeCCCCCCCEEEEEEEEEECCCCCcCCCCCCEEeEC
Confidence            1  13567899999999999999999998753  377777777655

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=8.7e-12  Score=99.57  Aligned_cols=181  Identities=11%  Similarity=0.052  Sum_probs=73.2

Q ss_pred             CCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN  323 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n  323 (460)
                      .|.+|.++.+ .....++.|+|.++...++. +.+|.++|+......+..      .........+.+...|.+++.|.|
T Consensus         2 ~Ps~P~~~~~~~~s~~si~vsW~pP~~~ng~-i~~Y~V~~~~~~~~~~~~------~~~~~~~~~~~~~~~y~~~v~~~~   74 (196)
T d2dtge2           2 NPSVPLDPISVSNSSSQIILKWKPPSDPNGN-ITHYLVFWERQAEDSELF------ELDYCLKGLKLPSRTWSPPFESED   74 (196)
T ss_dssp             CCCCCEEEEEEECSSSCEEEEEECCCCSSSS-CSEEECCEEEECCCCSCT------TCSSSCSCCCCCC-----------
T ss_pred             cCcCCcCCEEEeccCCEEEEEEECCCCCCCc-EEEEEEEEEcCCCCCcee------EEeeEEeccccceeEEEEEEEEEc
Confidence            4778888765 45677999999988776664 479999887765432221      111122234557788999999998


Q ss_pred             CCCCCCCCCcEEEEccCCCCCCCcc-------eEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCC
Q psy535          324 ELGDGMLSNIVVVKTKGPKPGPPRN-------VSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRP  395 (460)
Q Consensus       324 ~~G~~~~s~~~~~~~~~~~P~~p~~-------~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~  395 (460)
                      ..|.+..+...........+..+..       +.+.... ..+.+.|..+.........|.+.+...+...         
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  145 (196)
T d2dtge2          75 SQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEH---------  145 (196)
T ss_dssp             ---------------------------------------------------------------------CC---------
T ss_pred             CCccccCcCCccceecCCCCccccccccCCcCcEEEeccCCceeecccCcCCCccceEEEEEEeecCCCcc---------
Confidence            8877655544333322221222222       2222222 2445555544222222222222222211100         


Q ss_pred             CcccccccceecCceeeeeeccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCC---CceeEeec
Q psy535          396 EENSYLGEYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGML---SNIVVVKT  459 (460)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~---s~~~~~~T  459 (460)
                                        .......+..++.|.+|.|++.|.|+|.|+|..|.|.+   +..+.++|
T Consensus       146 ------------------~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~~~~~s~s~~~~~rT  194 (196)
T d2dtge2         146 ------------------RPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSART  194 (196)
T ss_dssp             ------------------SCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEEC
T ss_pred             ------------------EEEEeccceEEEEECCCCCCCEEEEEEEEEECCCCCCCccCcceEEeeC
Confidence                              01111245678999999999999999999999998865   44566666

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.5e-12  Score=88.55  Aligned_cols=87  Identities=23%  Similarity=0.417  Sum_probs=56.7

Q ss_pred             CCCCcceEEEeecceEEEEecCCCCCCc-cceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          343 PGPPRNVSVTEVNNGFVISWQPPLERAS-LIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       343 P~~p~~~~~~~~~~~v~l~W~~~~~~~~-~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      ++|| +|.+....+++.|+|.+|...++ .+..|+|+|+..+. |.....                          ....
T Consensus         6 ~~Pp-~l~v~~~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~--------------------------~~~~   58 (100)
T d2gysa4           6 MAPP-SLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKT--------------------------ETLQ   58 (100)
T ss_dssp             CCCC-EEEEC---CCCEEEEEC--------CEEEEEEEECSSSCSTTSCE--------------------------EEEE
T ss_pred             CCCC-ccEEEECCCEEEEEEecCcccCCccceEEEEEEeecccceeceee--------------------------cccC
Confidence            5566 78888767799999999876544 67799999997543 111100                          0112


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCC--CCCCceeE
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGD--GMLSNIVV  456 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~--s~~s~~~~  456 (460)
                      ..+.+.|.+|.|++.|.|||+|.|..|.  |.+|++..
T Consensus        59 ~~~~~~l~~L~p~t~Y~~rVRa~~~~g~~~g~WSeWS~   96 (100)
T d2gysa4          59 NAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSE   96 (100)
T ss_dssp             SCSEEECCCCCSSCCCEEEEEEEECCTTCCBCCCCCCC
T ss_pred             CceEEEeCCCCCCCeEEEEEEEEECCCCCCCCccCCCC
Confidence            4678999999999999999999998874  66666654

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.6e-11  Score=86.84  Aligned_cols=87  Identities=10%  Similarity=0.159  Sum_probs=61.9

Q ss_pred             CeeEEcc-eeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEE---e----------ecCeEEEeecCCC
Q psy535           57 AKVTFTP-TVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV---M----------QNGSLLFTRVNQN  122 (460)
Q Consensus        57 p~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~---~----------~~~~l~i~~~~~~  122 (460)
                      |.+...+ ....+..|+++.|.|.+.+.|.+ .+.|+++|..+..........   .          ..+.|.|.+++.+
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p-~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSD-IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTC-EEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCC-eEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            4444333 33456789999999999999877 799999998876432211111   0          0136999999999


Q ss_pred             CCe-EEEEEEEcCCCCcceeeEEEE
Q psy535          123 HQG-RYTCTPYNAHGTQGSSGQMEV  146 (460)
Q Consensus       123 d~G-~y~C~~~~~~g~~~~~~~~~v  146 (460)
                      |.| .|+|.|.|..|....  .+.|
T Consensus        81 D~g~~Y~C~A~N~~G~~~~--~i~L  103 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAA--YIQL  103 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEE--EEEE
T ss_pred             HCCcEEEEEEEeCCCeEEE--EEEE
Confidence            999 599999999998643  4444

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.7e-11  Score=82.27  Aligned_cols=86  Identities=20%  Similarity=0.308  Sum_probs=70.7

Q ss_pred             eeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCC
Q psy535          252 ITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS  331 (460)
Q Consensus       252 ~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s  331 (460)
                      +.......+++|+|.++...+..++..|.++++..+...|......  ....+.|.+|.+++.|.|+|.|.|..|.|.+|
T Consensus        10 ~~~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S   87 (97)
T d2crza1          10 LQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQG--SEVECTVSSLLPGKTYSFRLRAANKMGFGPFS   87 (97)
T ss_dssp             ECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEEE--SCSEEEEESCCTTCEEEECCEEECSSCBCCCC
T ss_pred             EeeeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCCceeEeecC--CceEEEEcCCCCCEEEEEEEEEecCCeEcCCc
Confidence            3344556799999998776666556899999998887777765432  45789999999999999999999999999999


Q ss_pred             CcEEEEcc
Q psy535          332 NIVVVKTK  339 (460)
Q Consensus       332 ~~~~~~~~  339 (460)
                      ..+.+.+.
T Consensus        88 ~~~~~~T~   95 (97)
T d2crza1          88 EKCDITTA   95 (97)
T ss_dssp             CCEEEECC
T ss_pred             CCCeEEeC
Confidence            99988865

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=1e-11  Score=86.62  Aligned_cols=89  Identities=21%  Similarity=0.440  Sum_probs=66.8

Q ss_pred             CCceeeCCCcc-cccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc----ccEEE--ecceEEEccccceeceEEE
Q psy535          151 PPAFTIKPEAM-YQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK----NRVKI--VGGNITIEGLRRVDFGYYE  223 (460)
Q Consensus       151 ~p~~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~----~~~~~--~~~~l~i~~~~~~~~g~y~  223 (460)
                      ||.+...+... ..+..|+++.|.|.+   .|.|.|.+.|++++..+...    .....  ..+.|.|.++...|.|.|+
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~---~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   79 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDA---DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYV   79 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEE---EEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEE---EEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEE
Confidence            56655544332 256789999999999   79999999999954333221    11111  2357999999999999999


Q ss_pred             EEEecccceeeeeeEEEEe
Q psy535          224 CVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       224 C~a~n~~g~~~~~~~l~v~  242 (460)
                      |.|.|..|.....+.|.|.
T Consensus        80 C~a~N~~G~~~~~~~l~V~   98 (100)
T d1qz1a3          80 CIAENKAGEQDASIHLKVF   98 (100)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEEE
Confidence            9999999999888888775

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5.4e-11  Score=85.01  Aligned_cols=92  Identities=23%  Similarity=0.329  Sum_probs=68.7

Q ss_pred             eeeCCCcccccCCCCeEEEEeeeeccCCCC---CCeeEEEcCCCccC---CcccEEE----------ecceEEEccccce
Q psy535          154 FTIKPEAMYQRKVGESVDMHCEAQEAEGTQ---KPTITWQRRDGVAL---PKNRVKI----------VGGNITIEGLRRV  217 (460)
Q Consensus       154 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p---~~~~~W~~~~~~~~---~~~~~~~----------~~~~l~i~~~~~~  217 (460)
                      |...|... .+..|++++|.|.+   .|.|   .|.+.|++++....   ...++..          ....|.|.++...
T Consensus         3 F~~~P~~~-~v~~G~~v~l~C~v---~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   78 (113)
T d2dava1           3 FIEKPQGG-TVKVGEDITFIAKV---KAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN   78 (113)
T ss_dssp             CCSCCCCC-EEETTCCEEEEEEE---ECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred             EeECCceE-EEeCCCEEEEEEEE---ccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHH
Confidence            33455555 78899999999999   6777   57999998543322   1222221          1235999999999


Q ss_pred             eceEEEEEEecccceeeeeeEEEEecCCCCCC
Q psy535          218 DFGYYECVVSNEVATIVQAAQLVVEGTQPHAP  249 (460)
Q Consensus       218 ~~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~p  249 (460)
                      |+|.|+|.|.|..|.....+.|.|...++..|
T Consensus        79 D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~~p  110 (113)
T d2dava1          79 FAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP  110 (113)
T ss_dssp             SCEEEEEEEECSSCEEEECCEEEEECCCCSCC
T ss_pred             HCeEEEEEEEeCCCEEEEEEEEEEEcCCCcCC
Confidence            99999999999999999999999986555444

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=2e-11  Score=83.38  Aligned_cols=85  Identities=22%  Similarity=0.418  Sum_probs=64.6

Q ss_pred             ceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc--cEEE-ecceEEEccccceeceEEEEEEecc
Q psy535          153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN--RVKI-VGGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       153 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~--~~~~-~~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      .|...|... .+..|+.+.|.|.+   .|.|.|.+.|++++..+....  +... .++.|.|.++...|+|.|+|.|.|.
T Consensus         3 ~F~~~P~~~-~v~~G~~~~l~C~v---~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~   78 (92)
T d1epfa2           3 MFKNAPTPQ-EFKEGEDAVIVCDV---VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL   78 (92)
T ss_dssp             EEEECCSSE-ECCTTSCEEECCEE---ECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEG
T ss_pred             EEEEcCCCE-EEeCCCcEEEEEEE---eecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEEC
Confidence            344556665 78999999999999   799999999999665444332  2333 3457999999999999999999998


Q ss_pred             cceeeeeeEEEE
Q psy535          230 VATIVQAAQLVV  241 (460)
Q Consensus       230 ~g~~~~~~~l~v  241 (460)
                      .+.......+.|
T Consensus        79 ~~~~~~~~~i~V   90 (92)
T d1epfa2          79 ARGEINFKDIQV   90 (92)
T ss_dssp             GGTEEEEEEEEE
T ss_pred             cCCEEEEEEEEE
Confidence            776655555544

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=9e-11  Score=81.96  Aligned_cols=89  Identities=19%  Similarity=0.310  Sum_probs=67.4

Q ss_pred             CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccC------CcccEEEe----cceEEEcccc-ce
Q psy535          150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVAL------PKNRVKIV----GGNITIEGLR-RV  217 (460)
Q Consensus       150 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~------~~~~~~~~----~~~l~i~~~~-~~  217 (460)
                      .||.+...+... .+..|+.+.|.|.+   .+.|.+ .+.|++.+....      ...++...    ...|.|.++. ..
T Consensus         1 GPP~i~~~~~~~-~v~~G~~v~l~C~v---~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~   76 (101)
T d3b5ha1           1 GPPRVKAVKSSE-HINEGETAMLVCKS---ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA   76 (101)
T ss_dssp             CSCCCEESCSEE-EECTTSCEEEEEEC---CCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTT
T ss_pred             CCceEEEcCCcE-EECcCCeEEEEEEE---EecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEecccccc
Confidence            378888777665 68899999999999   788877 799998542221      12233322    2268999998 57


Q ss_pred             eceEEEEEEecccceeeeeeEEEEe
Q psy535          218 DFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       218 ~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                      |+|.|+|.|.|..|.....+.|.|.
T Consensus        77 D~G~Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          77 DPGQYRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             SSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEECCCEEEEEEEEEEC
Confidence            9999999999999999888888763

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=9.7e-12  Score=86.50  Aligned_cols=89  Identities=11%  Similarity=0.041  Sum_probs=63.0

Q ss_pred             CCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCCCc
Q psy535          343 PGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPPGS  422 (460)
Q Consensus       343 P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (460)
                      | +|.++++.......+|+|++|...++.+..|.++....+.|.                        .|..........
T Consensus         2 P-~P~nv~v~s~n~~~~L~W~pP~~~g~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~   56 (98)
T d1fyhb1           2 P-TPTNVTIESYNMNPIVYWEYQIMPQVPVFTVEVKNYGVKNSE------------------------WIDACINISHHY   56 (98)
T ss_dssp             C-CCEEEEEECBSSCCEEEEECCCCSSCCEEEEEEEETTCSSSC------------------------CEEEEEEESSSE
T ss_pred             c-cCCceEEEEeCCcEEEEECCCCCCCCCceeEEEEEeccccce------------------------eEEeeeecccce
Confidence            6 789999987766678999999877776544444433222221                        112222233455


Q ss_pred             ceEEECCCCcCceEEEEEEEeecCCCCCCCceeE
Q psy535          423 TQITINRLTPATTYEFQVVGKNELGDGMLSNIVV  456 (460)
Q Consensus       423 ~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~  456 (460)
                      +.+++.+|.++..|.|||+|.|..|.|++++.-.
T Consensus        57 ~~~~~~~l~~~~~Y~fRV~A~n~~g~S~ws~s~~   90 (98)
T d1fyhb1          57 CNISDHVGDPSNSLWVRVKARVGQKESAYAKSEE   90 (98)
T ss_dssp             EECGGGCCSTTSCEEEEEEEEETTEECCCEECCC
T ss_pred             eeeEecccCCCCEEEEEEEEEcCCcccCCccCCC
Confidence            6778889999999999999999999999987544

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=7.2e-11  Score=78.82  Aligned_cols=81  Identities=20%  Similarity=0.362  Sum_probs=59.7

Q ss_pred             CceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEeccc
Q psy535          152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      |.|...|... .+..|+.+.|.|.+   .|.|.| .+.|++ ++..+....    ...+.|......|+|.|+|.|.|..
T Consensus         2 P~f~~~P~~~-~v~~G~~~~l~C~~---~g~P~P~~i~W~k-~g~~i~~~~----~~~~~l~~~~~~d~G~Y~C~A~N~~   72 (85)
T d1rhfa2           2 PFFTVEPKDL-AVPPNAPFQLSCEA---VGPPEPVTIVWWR-GTTKIGGPA----PSPSVLNVTGVTQSTMFSCEAHNLK   72 (85)
T ss_dssp             CEEEECCCCE-EECTTCCEEEEEEE---ECSSSCCEEEEEE-TTEECSCSE----ESSEEEEECCCSSCEEEEEEEEETT
T ss_pred             CcEEEeCCcE-EEcCCCEEEEEEEE---ecCCcceEEEEEE-CCEECCCCC----CcceEEecCCccccEEEEEEEEcCC
Confidence            5566677765 68899999999999   799987 899999 444443321    2345556666679999999999999


Q ss_pred             ceee-eeeEEEE
Q psy535          231 ATIV-QAAQLVV  241 (460)
Q Consensus       231 g~~~-~~~~l~v  241 (460)
                      |... ....|.|
T Consensus        73 G~~~S~~~~v~V   84 (85)
T d1rhfa2          73 GLASSRTATVHL   84 (85)
T ss_dssp             EEEECCCEEEEE
T ss_pred             CcEEEEEEEEEE
Confidence            9643 3555554

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.19  E-value=1.3e-11  Score=85.38  Aligned_cols=76  Identities=28%  Similarity=0.466  Sum_probs=61.4

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc---EEE--ecceEEEccccceeceEEEEEEecccceeeeee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR---VKI--VGGNITIEGLRRVDFGYYECVVSNEVATIVQAA  237 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~---~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~  237 (460)
                      .+..|+.+.|.|.+   .|.|.|.+.|++++..+....+   ...  ...+|.|.++...|+|.|+|.|.|..|....++
T Consensus        16 ~v~~G~~v~l~C~~---~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   92 (97)
T d3dara1          16 AVPAANTVKFRCPA---GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   92 (97)
T ss_dssp             EECTTCCEEEECCE---EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EECCCCcEEEEEEE---eEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEE
Confidence            57889999999999   7999999999995544433221   122  245899999999999999999999999988888


Q ss_pred             EEEE
Q psy535          238 QLVV  241 (460)
Q Consensus       238 ~l~v  241 (460)
                      .|.|
T Consensus        93 ~l~V   96 (97)
T d3dara1          93 HLDV   96 (97)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8776

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.1e-10  Score=82.05  Aligned_cols=93  Identities=16%  Similarity=0.222  Sum_probs=66.8

Q ss_pred             eeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe--------cceEEEccccceec
Q psy535          148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--------GGNITIEGLRRVDF  219 (460)
Q Consensus       148 v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~--------~~~l~i~~~~~~~~  219 (460)
                      |..||.+.....    ...+....|.|.+   .|.|.|.+.|++++..+....+....        ...|.|.++...|.
T Consensus         2 V~~PP~i~~~~~----~~~~~~~~i~~~v---~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~   74 (105)
T d1wwca_           2 VYYPPRVVSLEE----PELRLEHCIEFVV---RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNN   74 (105)
T ss_dssp             CCCCCCCCCCCC----CCCCCEEEEEEEE---ECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGC
T ss_pred             EEcCCeeEEeCC----CEEEEEEEEEEEE---EEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccc
Confidence            456887653322    2345566788888   79999999999955433333333221        23589999999999


Q ss_pred             eEEEEEEecccceeeeeeEEEEecCCCCC
Q psy535          220 GYYECVVSNEVATIVQAAQLVVEGTQPHA  248 (460)
Q Consensus       220 g~y~C~a~n~~g~~~~~~~l~v~~~~p~~  248 (460)
                      |.|+|.|.|..|..+.++.+.|.. +|.|
T Consensus        75 G~Y~C~a~N~~G~~~~~~~v~V~~-~P~P  102 (105)
T d1wwca_          75 GNYTLIAKNPLGTANQTINGHFLK-EPFP  102 (105)
T ss_dssp             EEEEEEEEETTEEEEEEEEECCSC-CCCC
T ss_pred             eEEEEEEEcCCCEEEEEEEEEEEe-CCCC
Confidence            999999999999999998888865 3443

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.4e-12  Score=86.86  Aligned_cols=87  Identities=16%  Similarity=0.220  Sum_probs=66.6

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEE--EecceEEEccccceece-EEEEEEe
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVK--IVGGNITIEGLRRVDFG-YYECVVS  227 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g-~y~C~a~  227 (460)
                      .|.+...+... .+..|+.+.|.|.+   .|.|.|.+.|++++..........  .....|.|.++...|.| .|+|.|.
T Consensus         2 ~P~i~~~~~~~-~v~~G~~v~l~C~~---~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~   77 (92)
T d2ifga1           2 VPTLKVQVPNA-SVDVGDDVLLRCQV---EGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAE   77 (92)
T ss_dssp             CCEEEEECCSS-CCBTTCCEEEEEEE---ECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred             CCEEEEeCCCE-EEeCCCEEEEeeec---cCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEE
Confidence            46666666665 78899999999999   799999999999655443221111  12347999999999999 6999999


Q ss_pred             cccceeeeeeEEEE
Q psy535          228 NEVATIVQAAQLVV  241 (460)
Q Consensus       228 n~~g~~~~~~~l~v  241 (460)
                      |..|....++.|.|
T Consensus        78 N~~G~~~~s~~l~V   91 (92)
T d2ifga1          78 NDVGRAEVSVQVNV   91 (92)
T ss_dssp             ETTEECCEEECCCC
T ss_pred             cCCCEEEEEEEEEE
Confidence            99999887776644

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.8e-10  Score=81.19  Aligned_cols=96  Identities=28%  Similarity=0.444  Sum_probs=77.1

Q ss_pred             CCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEE
Q psy535          244 TQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK  322 (460)
Q Consensus       244 ~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~  322 (460)
                      ..|.+|.++.. .....+++|+|.++.......+..|.++++..+...+............+.|.+|.+++.|.|++.|.
T Consensus         9 ~~P~~P~~l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rV~A~   88 (107)
T d1x5fa1           9 PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQ   88 (107)
T ss_dssp             CCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCcCCCccEEEEecCCEEEEEEECCccCCCCceEEEEEEEEeCCCCceEEEEEeCCCccEEEecCCCCCCEEEEEEEEE
Confidence            46778887774 45677899999987544444457899999887766666665555577899999999999999999999


Q ss_pred             cCCCCCCCCCcEEEEcc
Q psy535          323 NELGDGMLSNIVVVKTK  339 (460)
Q Consensus       323 n~~G~~~~s~~~~~~~~  339 (460)
                      |..|.|.+|..+.+.+.
T Consensus        89 n~~G~g~~S~~i~v~T~  105 (107)
T d1x5fa1          89 NKHGSGESSAPLRVETQ  105 (107)
T ss_dssp             CSSCEEEECCCEEEECC
T ss_pred             eCCCCcCCCCCEEEECC
Confidence            99999999999999875

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.18  E-value=3.5e-12  Score=86.41  Aligned_cols=72  Identities=14%  Similarity=0.167  Sum_probs=56.1

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecC---eEEEeecCCCCCeEEEEEEEcC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNG---SLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      +...+.+..+.+|+++.|.|.+ +.|.+ .+.|+|||.++.+.  .++....++   .|.|.++..+|+|.|+|.|.|.
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~-~v~W~k~g~~i~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~   78 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL-SEPDV-HGQWKLKGQPLTAS--PDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA   78 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC-SSSSC-CCBCCSSSCCCCSS--SSCEEEECSSCEEEECCSCCSCCCSEECCBCSSC
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE-CCCCc-EEEEEEeeeecccc--eeEEEEeeceeEEEEEcCCChhcCEEEEEEECce
Confidence            3345677888999999999998 45555 79999999998754  333344433   5999999999999999998663

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.7e-11  Score=82.17  Aligned_cols=86  Identities=14%  Similarity=0.226  Sum_probs=60.1

Q ss_pred             CCCCCcceEEEeec--ceEEEEecCCCCCC----ccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeee
Q psy535          342 KPGPPRNVSVTEVN--NGFVISWQPPLERA----SLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPI  415 (460)
Q Consensus       342 ~P~~p~~~~~~~~~--~~v~l~W~~~~~~~----~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (460)
                      .|.||.++.+....  ..+.|+|++|....    .....|+|+|+..+.                         ..|...
T Consensus         1 KPdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~-------------------------~~~~~~   55 (94)
T d3d85d3           1 KPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSK-------------------------REKKDR   55 (94)
T ss_dssp             CCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC-------------------------------CE
T ss_pred             CCCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCC-------------------------CccEEe
Confidence            38999999998654  46999999986532    247899999997543                         112211


Q ss_pred             ccCCCCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEe
Q psy535          416 PVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVV  457 (460)
Q Consensus       416 ~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~  457 (460)
                      ..  ...+   +..|.|++.|.|+|+|.+..|.|.+|++..+
T Consensus        56 ~~--~~~t---~~~L~p~~~Y~v~VRa~~~~~~g~WSeWS~~   92 (94)
T d3d85d3          56 VF--TDKT---SATVICRKNASISVRAQDRYYSSSWSEWASV   92 (94)
T ss_dssp             EE--ESSS---EEEECCCSSCEEEEEEEESSSCCCCCCCEEE
T ss_pred             cc--ccce---EEEecCCCCEEEEEEEecCCCCCCCccCcCC
Confidence            11  1122   2358899999999999999999999998765

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.17  E-value=2.6e-11  Score=85.63  Aligned_cols=76  Identities=24%  Similarity=0.324  Sum_probs=59.6

Q ss_pred             eeeecceeeEEEEEEE-ecCCCCCeEEEeeCCeecCcc-----ccccEEEeecCeEEEeecCCCCCe---EEEEEEEcCC
Q psy535           65 VQYLPFRLQGVVQCHI-KANPTFQYVTWTKDKRLLEPY-----QTKDIVVMQNGSLLFTRVNQNHQG---RYTCTPYNAH  135 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~-~~~~~~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G---~y~C~~~~~~  135 (460)
                      ..++.+|++++|.|.+ .|.|.+ .+.|+|++..+...     ...++....+++|.|.+++.+|+|   .|+|.|.|..
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~   89 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKP-LITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAA   89 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCC-EEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTT
T ss_pred             cccccCCCeEEEEEEcccCCCCC-EEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCC
Confidence            3456789999999986 788876 89999987765432     223456667789999999999877   7999999999


Q ss_pred             CCccee
Q psy535          136 GTQGSS  141 (460)
Q Consensus       136 g~~~~~  141 (460)
                      |.....
T Consensus        90 g~~~~~   95 (111)
T d1biha2          90 VDEEVV   95 (111)
T ss_dssp             CSSCEE
T ss_pred             CCceEE
Confidence            887543

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.6e-10  Score=79.80  Aligned_cols=92  Identities=34%  Similarity=0.485  Sum_probs=74.5

Q ss_pred             CCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN  323 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n  323 (460)
                      .|.+|.++.. .....++.|+|.++...+.. +.+|.+.|+..+...|..+..   ....+.|.+|.+++.|.|++.|.|
T Consensus        10 vP~~P~~l~v~~~s~~si~l~W~~P~~~~g~-i~~Y~v~~~~~~~~~~~~~~~---~~~~~~i~~L~p~t~Y~~~V~A~n   85 (103)
T d1x5ga1          10 LPGPAPNLRAYAASPTSITVTWETPVSGNGE-IQNYKLYYMEKGTDKEQDVDV---SSHSYTINGLKKYTEYSFRVVAYN   85 (103)
T ss_dssp             CCCCCSSCEEEEEETTEEEEECCCCSCCSSC-CSEEEEEEEETTCCCCCCEEE---CSSEEEECSCCTTCEEEEEEEEEC
T ss_pred             CcccCCCcEEEEccCCEEEEEEECCcCCCcc-EEEEEEEEEeCCCceeEEEec---cccEEecCCCCCCCEEEEEEEEEc
Confidence            4667777665 45677999999988766655 479999999887766665543   457899999999999999999999


Q ss_pred             CCCCCCCCCcEEEEccC
Q psy535          324 ELGDGMLSNIVVVKTKG  340 (460)
Q Consensus       324 ~~G~~~~s~~~~~~~~~  340 (460)
                      ..|.|..|..+.++|.+
T Consensus        86 ~~G~g~~S~~v~v~T~e  102 (103)
T d1x5ga1          86 KHGPGVSTPDVAVRTLS  102 (103)
T ss_dssp             SSCCCCBCCCCCEECCC
T ss_pred             CCcCcCCCCCEEEEcCC
Confidence            99999999988888764

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.3e-10  Score=81.11  Aligned_cols=89  Identities=15%  Similarity=0.229  Sum_probs=66.7

Q ss_pred             eeCCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe---------cceEEEcccccee
Q psy535          148 VRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV---------GGNITIEGLRRVD  218 (460)
Q Consensus       148 v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~---------~~~l~i~~~~~~~  218 (460)
                      |..||.+....    ....++...+.|.+   .|.|.|.+.|++++..+....+....         .+.|.|.++...|
T Consensus         1 v~~pP~it~~~----~~~~~~~~~i~~~v---~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   73 (103)
T d1wwbx_           1 VHFAPTITFLE----SPTSDHHWCIPFTV---KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMN   73 (103)
T ss_dssp             CCCCCCCCCCC----CCCCCCEEEEEEEE---ECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGG
T ss_pred             CccCCeeEEcC----CCccceeEEEEEEE---EEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHh
Confidence            34577764321    23467788899998   79999999999955544433333221         2369999999999


Q ss_pred             ceEEEEEEecccceeeeeeEEEEec
Q psy535          219 FGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       219 ~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      .|.|+|.|.|..|.....+.|.|..
T Consensus        74 ~G~Y~C~a~N~~G~~~~~~~v~V~~   98 (103)
T d1wwbx_          74 NGDYTLIAKNEYGKDEKQISAHFMG   98 (103)
T ss_dssp             CEEEEEEEECSSCEEEEEEEECCSC
T ss_pred             CceEEEEEeccCCEEEEEEEEEEEe
Confidence            9999999999999999998887764

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=9.8e-11  Score=81.63  Aligned_cols=94  Identities=21%  Similarity=0.205  Sum_probs=74.2

Q ss_pred             CCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeecc---CCCCceEEEccCccCccEEEEEEEE
Q psy535          246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVT---PPGSTQITINRLTPATTYEFQVVGK  322 (460)
Q Consensus       246 p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~~~~~~~~~~a~  322 (460)
                      |.+|..........++.|.|.++...++.++.+|.++|+..+...|......   ......+.|.+|.+++.|.|++.|.
T Consensus         3 P~~P~~~~~~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~   82 (101)
T d2haza1           3 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAAL   82 (101)
T ss_dssp             CCCCEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEEEEE
T ss_pred             CcCCccCEEEeeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEEEEEEE
Confidence            5667655566677889999998877666656899999998877666543221   1134579999999999999999999


Q ss_pred             cCCCCCCCCCcEEEEcc
Q psy535          323 NELGDGMLSNIVVVKTK  339 (460)
Q Consensus       323 n~~G~~~~s~~~~~~~~  339 (460)
                      |..|.|.+|..+.+.+.
T Consensus        83 N~~G~g~~S~~~~~~T~   99 (101)
T d2haza1          83 NGKGLGEISAASEFKTQ   99 (101)
T ss_dssp             ETTEECCCCCCEEEECC
T ss_pred             eCCcCcCCCCceeEEeC
Confidence            99999999999988865

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.7e-10  Score=80.75  Aligned_cols=88  Identities=20%  Similarity=0.324  Sum_probs=67.5

Q ss_pred             CceeeCCCcccccCCCCeEEEEeeeeccCCCC---CCeeEEEcCCCccCC---cccEEEe----------cceEEEcccc
Q psy535          152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQ---KPTITWQRRDGVALP---KNRVKIV----------GGNITIEGLR  215 (460)
Q Consensus       152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p---~~~~~W~~~~~~~~~---~~~~~~~----------~~~l~i~~~~  215 (460)
                      +.|...|... .+..|++++|.|.+   .|.|   .|.+.|++++...+.   ..++...          ...|.|.+++
T Consensus         5 ~~Fv~~P~~~-~v~~G~~v~l~C~v---~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   80 (110)
T d2avga1           5 GLFVMRPQDG-EVTVGGSITFSARV---AGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQ   80 (110)
T ss_dssp             CSEEECCCCE-EEETTSEEEEEEEE---ECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCC
T ss_pred             CEeEECCCeE-EEECCCCEEEEEee---cCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccC
Confidence            3455666665 78899999999999   6777   578999985533321   1222211          2369999999


Q ss_pred             ceeceEEEEEEecccceeeeeeEEEEec
Q psy535          216 RVDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       216 ~~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      ..|+|.|+|.|.|..|....++.|.|..
T Consensus        81 ~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          81 PAFTGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             HHHCcEEEEEEEECCCeEEEEEEEEEEe
Confidence            9999999999999999999999999875

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.1e-11  Score=82.33  Aligned_cols=69  Identities=16%  Similarity=0.204  Sum_probs=57.1

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                      .+..|+.+.|.|.+   .|.|.|.+.|++++....+..         .+.+++..|+|.|+|.|.|..|..+..+.|.|.
T Consensus        15 ~~~~G~~~~l~C~a---~G~P~P~v~W~k~g~~~~~~~---------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~   82 (84)
T d2oz4a3          15 TWPENSQQTPMCQA---WGNPLPELKCLKDGTFPLPIG---------ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL   82 (84)
T ss_dssp             EEETTCEECCCCCC---EEESCCEEEEEETTTEECCTT---------SCEECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeCCCEEEEEEEE---eEcCccEEEEEEeeccceeee---------eeeccccCCCCEEEEEEEcCCCEEEEEEEEEEE
Confidence            67899999999999   799999999999665444322         234577899999999999999999888888886


Q ss_pred             c
Q psy535          243 G  243 (460)
Q Consensus       243 ~  243 (460)
                      .
T Consensus        83 ~   83 (84)
T d2oz4a3          83 S   83 (84)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=6e-11  Score=80.96  Aligned_cols=77  Identities=29%  Similarity=0.504  Sum_probs=59.5

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE--e----cceEEEccccceeceEEEEEEeccccee-ee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI--V----GGNITIEGLRRVDFGYYECVVSNEVATI-VQ  235 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~--~----~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~  235 (460)
                      .+..|+.+.|.|.+   .+.|.|.+.|++++..+....+...  .    ...|.|.++...|.|.|+|.|.|..|.. +.
T Consensus         7 ~v~~G~~~~l~C~v---~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~   83 (91)
T d1rhfa1           7 TVSQGQPVKLNCSV---EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQ   83 (91)
T ss_dssp             EEETTCCEEEEEEE---ESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECC
T ss_pred             EEcCCCeEEEEEEE---EecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEE
Confidence            67889999999999   7999999999995544333333222  1    2368999999999999999999999974 45


Q ss_pred             eeEEEEe
Q psy535          236 AAQLVVE  242 (460)
Q Consensus       236 ~~~l~v~  242 (460)
                      .+.|.|.
T Consensus        84 ~~~l~V~   90 (91)
T d1rhfa1          84 PVWLTVE   90 (91)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEEE
Confidence            6666664

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=6.6e-11  Score=81.46  Aligned_cols=84  Identities=14%  Similarity=0.281  Sum_probs=63.5

Q ss_pred             eeecceeeEEEEEEEe-cCCCCCeEEEeeCCeecCc--------cccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           66 QYLPFRLQGVVQCHIK-ANPTFQYVTWTKDKRLLEP--------YQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~-~~~~~~~v~W~~~~~~~~~--------~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      +....|++|+|.|... .......|.|++++..+..        ....+.....+++|.|.+++.+|+|.|+|.+.+..|
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g   84 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   84 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence            3455699999999642 2233346999998876531        123456666788999999999999999999999988


Q ss_pred             CcceeeEEEEEee
Q psy535          137 TQGSSGQMEVLVR  149 (460)
Q Consensus       137 ~~~~~~~~~v~v~  149 (460)
                      .......+.|.|.
T Consensus        85 ~~~~~~~~~L~V~   97 (98)
T d1hnga1          85 TRILNKALDLRIL   97 (98)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEE
Confidence            8767778888775

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.14  E-value=8.9e-11  Score=81.02  Aligned_cols=76  Identities=17%  Similarity=0.204  Sum_probs=59.1

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc--EEE----ecceEEEccccceeceEEEEEEecccceee-e
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR--VKI----VGGNITIEGLRRVDFGYYECVVSNEVATIV-Q  235 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~--~~~----~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~-~  235 (460)
                      .+..|+.+.|.|.+   .|.|.|.+.|++++..+.....  +..    ....|.|.++...|.|.|+|.|.|..|... .
T Consensus        14 ~~~~G~~v~l~C~~---~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   90 (97)
T d1biha3          14 MAKAGDVTMIYCMY---GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH   90 (97)
T ss_dssp             EEETTSCEEEEEEE---ECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEE
T ss_pred             EEecCCeEEEEEEE---EEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEE
Confidence            67889999999998   7899999999996554433222  221    234799999999999999999999999754 4


Q ss_pred             eeEEEE
Q psy535          236 AAQLVV  241 (460)
Q Consensus       236 ~~~l~v  241 (460)
                      ++.|.|
T Consensus        91 s~~L~V   96 (97)
T d1biha3          91 SLKLTV   96 (97)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            566665

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.13  E-value=1.4e-10  Score=82.40  Aligned_cols=87  Identities=22%  Similarity=0.371  Sum_probs=63.8

Q ss_pred             CCceeeC-CCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC----c--ccEEE-----------ecceEEEc
Q psy535          151 PPAFTIK-PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP----K--NRVKI-----------VGGNITIE  212 (460)
Q Consensus       151 ~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~----~--~~~~~-----------~~~~l~i~  212 (460)
                      +|.+... |... .+..|+++.|.|.+   .|.|.|.+.|++++.....    .  .....           ....|.|.
T Consensus         4 ~P~i~~~~P~~~-tv~~G~~v~l~C~v---~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~   79 (109)
T d2fdbp2           4 RPILQAGLPANA-STVVGGDVEFVCKV---YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR   79 (109)
T ss_dssp             CCEECTTCSCCE-EECTTCCEEEEEEE---ECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEEC
T ss_pred             CCEEcCCCCCCE-EEecCCcEEEEEEE---EEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEEC
Confidence            4555443 4554 78999999999999   7999999999984322110    0  00010           12469999


Q ss_pred             cccceeceEEEEEEecccceeeeeeEEEE
Q psy535          213 GLRRVDFGYYECVVSNEVATIVQAAQLVV  241 (460)
Q Consensus       213 ~~~~~~~g~y~C~a~n~~g~~~~~~~l~v  241 (460)
                      ++...|.|.|+|.|.|..|....+..|.|
T Consensus        80 ~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          80 NVTFEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             SCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCCHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999999999999998888876

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2e-10  Score=79.36  Aligned_cols=92  Identities=20%  Similarity=0.202  Sum_probs=71.6

Q ss_pred             CCCCcee-eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCC
Q psy535          247 HAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL  325 (460)
Q Consensus       247 ~~p~~~~-~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~  325 (460)
                      .+|..+. ......++.|+|.++...+..++..|+++++..+...|...... .....+.|.+|.+++.|.|++.|.|..
T Consensus         2 ~~P~~~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~v~~L~p~t~Y~~rV~A~n~~   80 (96)
T d1x5xa1           2 SMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYD-GEDLAYTVKNLRRSTKYKFKVIAYNSE   80 (96)
T ss_dssp             CCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEE-ESCSEEEEESCCSSCEEEEEEEEECSS
T ss_pred             ccCCCCEEEEecCCEEEEEEEeecccCcceEeeeEEEeeeccceeeeEEeec-CCCCEEEECCCCCCCEEEEEEEEEcCC
Confidence            3444444 34567899999998777666666788888887766555444332 256789999999999999999999999


Q ss_pred             CCCCCCCcEEEEcc
Q psy535          326 GDGMLSNIVVVKTK  339 (460)
Q Consensus       326 G~~~~s~~~~~~~~  339 (460)
                      |.|.+|..+.++|.
T Consensus        81 G~s~~S~~~~~~T~   94 (96)
T d1x5xa1          81 GKSNPSEVVEFTTC   94 (96)
T ss_dssp             CEEEECCCEEEECC
T ss_pred             cEeCCCCCEEEEeC
Confidence            99999999998875

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.11  E-value=1.6e-10  Score=79.30  Aligned_cols=80  Identities=14%  Similarity=0.293  Sum_probs=61.2

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCcc-cEEE--ecceEEEccccceeceEEEEEE
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPKN-RVKI--VGGNITIEGLRRVDFGYYECVV  226 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~~-~~~~--~~~~l~i~~~~~~~~g~y~C~a  226 (460)
                      +|.+...|... .+..|+.+.|.|.+   .|.|.| .+.|++++..+.... ....  ..++|.|.++...|+|.|+|.|
T Consensus         2 ~P~i~~~p~~~-~v~~g~~~~l~C~~---~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   77 (94)
T d1biha1           2 YPVLKDQPAEV-LFRENNPTVLECII---EGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFA   77 (94)
T ss_dssp             CCEECCCCSEE-EEETTSCEEECCCE---ESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEecCCcE-EEeCCCeEEEEEEe---cCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEE
Confidence            46676677665 68899999999999   677765 799999554332222 2222  2468999999999999999999


Q ss_pred             ecccceee
Q psy535          227 SNEVATIV  234 (460)
Q Consensus       227 ~n~~g~~~  234 (460)
                      .|..|...
T Consensus        78 ~N~~G~~~   85 (94)
T d1biha1          78 ETPAGVAS   85 (94)
T ss_dssp             EETTEEEE
T ss_pred             EeCCCEEE
Confidence            99999754

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=8.2e-11  Score=86.77  Aligned_cols=90  Identities=23%  Similarity=0.427  Sum_probs=66.8

Q ss_pred             eCCCceeeC-----CCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC-------------------------
Q psy535          149 RKPPAFTIK-----PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP-------------------------  198 (460)
Q Consensus       149 ~~~p~~~~~-----~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~-------------------------  198 (460)
                      +.||.+...     +... .+..|+.++|.|.+   .|.|.|.+.|++++.....                         
T Consensus         2 q~PP~i~~~~~~~~~~~v-~v~~G~~v~L~C~v---~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (130)
T d1gxea_           2 QEPPKIHLDCPGRIPDTI-VVVAGNKLRLDVPI---SGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKL   77 (130)
T ss_dssp             CBCCCSCCSSSCCCCCEE-EESSSSCCCCEEEC---CSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCC
T ss_pred             CCCCEEECCCCCCCCCCE-EEEcCCeEEEEEEE---EEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCce
Confidence            457776432     3333 68899999999999   8999999999985432210                         


Q ss_pred             ----cccEEE--e--cceEEEccccceeceEEEEEEecccceeeeeeEEEEe
Q psy535          199 ----KNRVKI--V--GGNITIEGLRRVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       199 ----~~~~~~--~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                          ..+..+  .  ...|.|.++...|+|.|+|.|.|..|.....+.|.|.
T Consensus        78 ~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          78 LCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             CCSCSSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             eeccCceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence                011111  1  2359999999999999999999999999888888774

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.2e-11  Score=84.57  Aligned_cols=90  Identities=9%  Similarity=0.088  Sum_probs=59.0

Q ss_pred             EEcceeeeecceeeEEEEEEEecC-C-CCCeEEEeeCCeecCccccccEEEe---ecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKAN-P-TFQYVTWTKDKRLLEPYQTKDIVVM---QNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~~v~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      .+.+....+.+|+.++|.|.+.|. | +.+.|+|++++.++...........   ....|.|.....+|.|.|+|+|.|.
T Consensus         6 ~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~   85 (106)
T d1zxqa1           6 ILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLD   85 (106)
T ss_dssp             EEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             EecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEec
Confidence            345555678899999999999874 3 2347999999998854221111101   1124777777778888999999998


Q ss_pred             CCCcceeeEEEEEeeCC
Q psy535          135 HGTQGSSGQMEVLVRKP  151 (460)
Q Consensus       135 ~g~~~~~~~~~v~v~~~  151 (460)
                      .+....  .+.+.+..|
T Consensus        86 ~~~~~~--~~~~~~s~p  100 (106)
T d1zxqa1          86 LMSRGG--NIFHKHSAP  100 (106)
T ss_dssp             CGGGTC--CEEEEECCC
T ss_pred             CCCCCC--eeEecccCC
Confidence            775432  334444433

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.8e-11  Score=85.16  Aligned_cols=87  Identities=20%  Similarity=0.359  Sum_probs=63.0

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEE-----------EecceEEEccccceec
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVK-----------IVGGNITIEGLRRVDF  219 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~~~  219 (460)
                      ||.+....... .+..|+.++|.|.+.  .|.|.+.+.|++++.......+..           ...+.|.|.++...|.
T Consensus         2 PP~~p~~~~~~-~v~~G~~v~l~C~~~--~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~   78 (104)
T d1nbqa2           2 PPSKPTVNIPS-SATIGNRAVLTCSEQ--DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDT   78 (104)
T ss_dssp             CCCCCCCCCBS-EEETTSCEEECCCCC--SCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGC
T ss_pred             CCcccccCCCC-EEecCCcEEEEEEee--cCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccC
Confidence            55555444443 577899999999973  589999999999655443222111           1234689999999999


Q ss_pred             eEEEEEEecccceeeeeeEEE
Q psy535          220 GYYECVVSNEVATIVQAAQLV  240 (460)
Q Consensus       220 g~y~C~a~n~~g~~~~~~~l~  240 (460)
                      |.|+|.|.|..|....+..+.
T Consensus        79 G~Y~C~a~N~~G~~~~s~~v~   99 (104)
T d1nbqa2          79 GEYSCEARNGYGTPMTSNAVR   99 (104)
T ss_dssp             CCEEEEEECSSSCCEECCCBC
T ss_pred             cEEEEEEEECCCceEEEEEEE
Confidence            999999999999876655443

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.9e-10  Score=81.19  Aligned_cols=83  Identities=20%  Similarity=0.406  Sum_probs=63.9

Q ss_pred             eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcE
Q psy535          255 VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV  334 (460)
Q Consensus       255 ~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~  334 (460)
                      .....++.|+|.++.+++.+ +.+|.++|+..+...+............+.|.+|.+++.|.|++.|.|..|.|.+|..+
T Consensus        23 ~~~~~sv~l~W~~P~~~~~~-I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~N~~G~s~~S~~~  101 (108)
T d1wf5a1          23 TVERRAINLTWTKPFDGNSP-LIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDT  101 (108)
T ss_dssp             SSSTTEEEEECCCCCCCSSC-EEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTTCEEEEEEEEEESSCEEEECCCC
T ss_pred             eccCCEEEEEEECCCCCCCc-cEEEEEEEEeccCCceEEeeeecCCccEEEECCCCCCCEEEEEEEEEcCCcCCCCcCCc
Confidence            45567999999998776554 57999999886654444433334456789999999999999999999999998887766


Q ss_pred             EEEc
Q psy535          335 VVKT  338 (460)
Q Consensus       335 ~~~~  338 (460)
                      ...+
T Consensus       102 ~~~t  105 (108)
T d1wf5a1         102 ERVS  105 (108)
T ss_dssp             SCEE
T ss_pred             CCEE
Confidence            5443

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=1e-10  Score=83.18  Aligned_cols=78  Identities=18%  Similarity=0.402  Sum_probs=56.8

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc----------EEE--ecceEEEccccceeceEEEEEEeccc
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR----------VKI--VGGNITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~----------~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      .+..|+++.|.|.+.  .|.|.+.+.|++++........          ...  ....|.|.++...|.|.|+|.|.|..
T Consensus        13 ~v~~G~~v~L~C~~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   90 (110)
T d1f97a2          13 SVTIGNRAVLTCSEH--DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY   90 (110)
T ss_dssp             EEETTSCEEEEEECS--CCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred             EEecCCeEEEEEEee--cCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence            467899999999973  5899999999995543322111          111  23368999999999999999999999


Q ss_pred             ceeeee--eEEEEe
Q psy535          231 ATIVQA--AQLVVE  242 (460)
Q Consensus       231 g~~~~~--~~l~v~  242 (460)
                      |....+  +.|.|.
T Consensus        91 G~~~~s~~v~l~V~  104 (110)
T d1f97a2          91 GTAMRSEAAHMDAV  104 (110)
T ss_dssp             SCCEECCCEEEEEE
T ss_pred             CcEEEEEEEEEEEE
Confidence            976554  445444

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.7e-10  Score=77.34  Aligned_cols=77  Identities=19%  Similarity=0.340  Sum_probs=58.6

Q ss_pred             CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCC-CeeEEEcCCCccCCcccEE-EecceEEEccccceeceEEEEEEe
Q psy535          150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQK-PTITWQRRDGVALPKNRVK-IVGGNITIEGLRRVDFGYYECVVS  227 (460)
Q Consensus       150 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~-~~~~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~C~a~  227 (460)
                      .+|.+...+... .+..|+.+.|.|.+   .+.|. +.+.|++++..+....+.. ..+.+|.|.++..+|+|.|+|.|.
T Consensus         5 ~~P~~~~~~~~v-~~~~G~~v~L~C~~---~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (93)
T d1n26a1           5 RCPAQEVARGVL-TSLPGDSVTLTCPG---VEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRA   80 (93)
T ss_dssp             CCCCCCCCTTEE-EECTTCCEEEECTT---SCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESS
T ss_pred             CCCcEEeCCCCE-EEeCCCcEEEEEEe---ecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEEC
Confidence            467777766655 67889999999998   56554 6899999665554433333 346789999999999999999998


Q ss_pred             ccc
Q psy535          228 NEV  230 (460)
Q Consensus       228 n~~  230 (460)
                      |..
T Consensus        81 n~~   83 (93)
T d1n26a1          81 GRP   83 (93)
T ss_dssp             SSC
T ss_pred             Ccc
Confidence            754

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.08  E-value=2.3e-10  Score=76.96  Aligned_cols=75  Identities=13%  Similarity=0.231  Sum_probs=57.2

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceee-eeeEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVV  241 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~-~~~~l~v  241 (460)
                      .+.+|+.++|.|.+.  .+.|.+.+.|++++. .+.   ....+..|.|.++..+|+|.|+|.|.|..|... ..+.|.|
T Consensus        11 ~v~eG~~v~L~C~~~--~~~p~~~~~W~k~g~-~~~---~~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V   84 (88)
T d2fcba2          11 EFQEGETIVLRCHSW--KDKPLVKVTFFQNGK-SKK---FSRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITV   84 (88)
T ss_dssp             EECTTCCEEEEEEEG--GGCCCEEEEEEETTE-EEE---EESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             eEecCCeEEEEEEec--CCCCCcEEEEEeecc-ccc---ccccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEE
Confidence            477899999999983  456777999999443 321   112355799999999999999999999988753 4567777


Q ss_pred             ec
Q psy535          242 EG  243 (460)
Q Consensus       242 ~~  243 (460)
                      ..
T Consensus        85 ~~   86 (88)
T d2fcba2          85 QA   86 (88)
T ss_dssp             CC
T ss_pred             eC
Confidence            64

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.08  E-value=3e-10  Score=78.41  Aligned_cols=80  Identities=30%  Similarity=0.508  Sum_probs=59.4

Q ss_pred             CCcccccCCCCeEEEEeeeeccCCCCC-CeeEEEcCCCccCC--cccEEEe-----cceEEEccccceeceEEEEEEecc
Q psy535          158 PEAMYQRKVGESVDMHCEAQEAEGTQK-PTITWQRRDGVALP--KNRVKIV-----GGNITIEGLRRVDFGYYECVVSNE  229 (460)
Q Consensus       158 ~~~~~~~~~g~~~~l~C~~~~~~~~p~-~~~~W~~~~~~~~~--~~~~~~~-----~~~l~i~~~~~~~~g~y~C~a~n~  229 (460)
                      |... .+..|+.+.|.|.+   .|.|. +.+.|++.++..+.  ..++...     ...|.|.++...|.|.|+|.|.|.
T Consensus         7 P~~~-~v~~G~~~~l~C~v---~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   82 (97)
T d1epfa1           7 PSQG-EISVGESKFFLCQV---AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE   82 (97)
T ss_dssp             SSSE-EEETTCCEEEEEEE---CCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCE-EEccCCcEEEEEEE---EeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeC
Confidence            3343 67899999999998   67774 79999986655432  2233322     246999999999999999999999


Q ss_pred             ccee-eeeeEEEE
Q psy535          230 VATI-VQAAQLVV  241 (460)
Q Consensus       230 ~g~~-~~~~~l~v  241 (460)
                      .|.. ..++.|.|
T Consensus        83 ~G~~~~~tv~l~V   95 (97)
T d1epfa1          83 DGTQSEATVNVKI   95 (97)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEE
Confidence            9874 34566655

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=2.4e-10  Score=79.89  Aligned_cols=76  Identities=26%  Similarity=0.471  Sum_probs=60.0

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC------------cccEEEecceEEEccccceeceEEEEEEeccc
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP------------KNRVKIVGGNITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~------------~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      .+..|+.+.|.|.+   .+.|.|.+.|++.++....            ..+....+++|.|.++...|.|.|+|.+.|..
T Consensus        12 ~v~~G~~v~l~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~~   88 (102)
T d1f97a1          12 QVPENESIKLTCTY---SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEG   88 (102)
T ss_dssp             EEETTCCEEEECEE---ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEETT
T ss_pred             EEeCCCEEEEEEEc---CCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEECC
Confidence            67899999999999   7889999999985543221            22334456689999999999999999999999


Q ss_pred             ceeeeeeEEEE
Q psy535          231 ATIVQAAQLVV  241 (460)
Q Consensus       231 g~~~~~~~l~v  241 (460)
                      |.......+.+
T Consensus        89 g~~~~~~~v~v   99 (102)
T d1f97a1          89 GQNYGEVSIHL   99 (102)
T ss_dssp             SSSEEEEEEEE
T ss_pred             CCEEEEEEEEE
Confidence            98766655544

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.8e-10  Score=76.66  Aligned_cols=90  Identities=24%  Similarity=0.354  Sum_probs=67.9

Q ss_pred             CCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcC
Q psy535          246 PHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE  324 (460)
Q Consensus       246 p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~  324 (460)
                      |.+|..+.. .....++.|.|.++.+++.+ +.+|.+.|+..+...+... ........+.|.+|.+++.|.|+|.|.|.
T Consensus         1 P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~-I~~Y~i~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~   78 (93)
T d2vkwa2           1 PSAPKLEGQMGEDGNSIKVNLIKQDDGGSP-IRHYLVRYRALSSEWKPEI-RLPSGSDHVMLKSLDWNAEYEVYVVAENQ   78 (93)
T ss_dssp             CCCCEEEEEECTTSSCEEEEEECCCCTTSC-CCEEEEEEEETTSCCCCCE-EECTTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCccCEeEEcCCCEEEEEeeCCCCCcCc-eEEEEEEeeecCcceeeee-eccCCceEEEEeccccceEEEEEEEEEcC
Confidence            556766653 45667899999998766555 4799999988765433322 23346678999999999999999999999


Q ss_pred             CCCCCCCCcEEEEc
Q psy535          325 LGDGMLSNIVVVKT  338 (460)
Q Consensus       325 ~G~~~~s~~~~~~~  338 (460)
                      .|.|+++. +.++|
T Consensus        79 ~G~s~ps~-~~~~T   91 (93)
T d2vkwa2          79 QGKSKAAH-FVFRT   91 (93)
T ss_dssp             TEECCCEE-EEEEC
T ss_pred             CCCcCCEe-EEEEe
Confidence            99998774 55554

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.4e-09  Score=74.28  Aligned_cols=81  Identities=22%  Similarity=0.283  Sum_probs=66.5

Q ss_pred             eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcE
Q psy535          255 VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV  334 (460)
Q Consensus       255 ~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~  334 (460)
                      .....++.|+|.++..++... ..|.+.++..+...+.....   ....+.|.+|.+++.|.|+|.|.|..|.|.+|..+
T Consensus        11 ~~s~~si~l~W~~p~~~~~~i-~~Y~v~~~~~~~~~~~~~~~---~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~~   86 (93)
T d1x4xa1          11 CRSATCAQVNWEVPLSNGTDV-TEYRLEWGGVEGSMQICYCG---PGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVV   86 (93)
T ss_dssp             EEETTEEEEECCCCSCSSSCC-CEEEEEEESSTTSCCEEEEE---SCSEEEEESCCSSCEEEEEEEEECSSCCCCBCCCE
T ss_pred             EeCCCeEEEEEEecccCCCee-EEEEEEEccCCCcceEeecC---CccEEEEcccceeeEEEEEEEEEECCcCcCCCCcE
Confidence            456789999999887766554 78999998876655554432   56789999999999999999999999999999999


Q ss_pred             EEEcc
Q psy535          335 VVKTK  339 (460)
Q Consensus       335 ~~~~~  339 (460)
                      .+++.
T Consensus        87 ~~~Tp   91 (93)
T d1x4xa1          87 ACVTP   91 (93)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            88864

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.8e-10  Score=77.53  Aligned_cols=82  Identities=21%  Similarity=0.249  Sum_probs=66.8

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC----CcccEEEecceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL----PKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQ  238 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~----~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~  238 (460)
                      .+..|+.+.|.|.+.  .+.|.+.+.|++++....    ...++...++.|.|.++...|+|.|+|.+.|..|....++.
T Consensus        13 ~~~~~e~~~l~C~~~--~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~   90 (101)
T d1iray1          13 VSSANEIDVRPCPLN--PNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKIS   90 (101)
T ss_dssp             EEETTSCEEECCCCC--GGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEeCCCeEEEEeeCC--CCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEEEE
Confidence            567899999999884  577899999999665433    22345556789999999999999999999999999999999


Q ss_pred             EEEecCCC
Q psy535          239 LVVEGTQP  246 (460)
Q Consensus       239 l~v~~~~p  246 (460)
                      |.|....|
T Consensus        91 L~V~~~~p   98 (101)
T d1iray1          91 AKFVENEP   98 (101)
T ss_dssp             EEEECCCT
T ss_pred             EEEEeCCC
Confidence            98875433

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=6.3e-10  Score=76.52  Aligned_cols=77  Identities=22%  Similarity=0.337  Sum_probs=60.5

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEe--cceEEEccccceeceEEEEEEecccceee-eeeEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIV--GGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQL  239 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~--~~~l~i~~~~~~~~g~y~C~a~n~~g~~~-~~~~l  239 (460)
                      .+..|++++|.|.+   .+ +.+.+.|++++..+....+....  ...|.|.++..+|.|.|+|.|.|..|... ..+.|
T Consensus        14 ~v~~g~~v~l~C~~---~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L   89 (96)
T d1l6za2          14 TVKELDSVTLTCLS---ND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKL   89 (96)
T ss_dssp             EECTTSCEEEEECC---CC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEE
T ss_pred             EEeCCCeEEEEEcc---CC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEE
Confidence            57889999999987   45 56799999966555445555544  44799999999999999999999998764 45777


Q ss_pred             EEec
Q psy535          240 VVEG  243 (460)
Q Consensus       240 ~v~~  243 (460)
                      .|..
T Consensus        90 ~V~~   93 (96)
T d1l6za2          90 DIIF   93 (96)
T ss_dssp             EECC
T ss_pred             EEEc
Confidence            7764

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.6e-10  Score=78.30  Aligned_cols=91  Identities=25%  Similarity=0.298  Sum_probs=70.5

Q ss_pred             CCCCCCcee-eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535          245 QPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN  323 (460)
Q Consensus       245 ~p~~p~~~~-~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n  323 (460)
                      ||.+|..+. ......++.|+|.++...+..++..|.+.++......|............+.+.+|.+++.|.|+|.|.|
T Consensus         2 Pp~pP~~p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~n   81 (104)
T d1bpva_           2 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKN   81 (104)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEEC
T ss_pred             CCCCCCCCEEEEecCCEEEEEEEeccccCcceEEEEEEEeecccccceeEEEeeccceeEEEEcCCCCCCEEEEEEEEEE
Confidence            566676654 3556789999999876666555678999998887777776655555678899999999999999999999


Q ss_pred             CCCC-CCCCCcEE
Q psy535          324 ELGD-GMLSNIVV  335 (460)
Q Consensus       324 ~~G~-~~~s~~~~  335 (460)
                      ..|. +.+|....
T Consensus        82 ~~G~~s~~S~~s~   94 (104)
T d1bpva_          82 AAGAISPPSEPSD   94 (104)
T ss_dssp             TTSCEEEEEEEEE
T ss_pred             CCCCCCCCcCCCC
Confidence            9996 55554443

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.5e-10  Score=81.93  Aligned_cols=98  Identities=30%  Similarity=0.374  Sum_probs=72.2

Q ss_pred             CCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCC-CCeeeeeccCCCCceEEEccCccCccEEEEEEEE
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN-KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK  322 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~  322 (460)
                      .|.+|.++.. .....+++|+|.++.+++.+ +..|.++++.... ..|..+.... ....+.|.+|.+++.|.|+|.|.
T Consensus        15 ~P~pP~~~~v~~~~~~sv~l~W~p~~~~~~~-i~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~v~~L~p~t~Y~frV~A~   92 (117)
T d1uema_          15 LPGPPSKPQVTDVTKNSVTLSWQPGTPGTLP-ASAYIIEAFSQSVSNSWQTVANHV-KTTLYTVRGLRPNTIYLFMVRAI   92 (117)
T ss_dssp             SCBCCCCCEEEEECSSCEEEECCCCBCSSSC-CCEEEEEEEETTTEEEEEEEEEEE-CSSEEEECSCCTTCEEEEEEEEE
T ss_pred             cCcCCCCCEEEEccCCEEEEEEECCCcCCCC-eEEEEEEEeccCCceeeEEecccc-ccccceECCCCCCCEEEEEEEEE
Confidence            4667776664 45678999999987666555 4799998776554 3455544322 45789999999999999999999


Q ss_pred             cCCCCCCCCCcE-EEEccCCCCC
Q psy535          323 NELGDGMLSNIV-VVKTKGPKPG  344 (460)
Q Consensus       323 n~~G~~~~s~~~-~~~~~~~~P~  344 (460)
                      |..|.+.+|... .+++.+..|.
T Consensus        93 N~~G~s~~S~~s~~v~t~~~~Ps  115 (117)
T d1uema_          93 NPQGLSDPSPMSDPVRTQDSGPS  115 (117)
T ss_dssp             ETTEEEEECCCCCCEECCCSSCC
T ss_pred             eCCcCCCCcCCCcCEEeCCCCcC
Confidence            999998877764 3666655443

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.5e-10  Score=77.11  Aligned_cols=87  Identities=22%  Similarity=0.273  Sum_probs=69.3

Q ss_pred             CCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCC
Q psy535          246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL  325 (460)
Q Consensus       246 p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~  325 (460)
                      |.+|..+.......++.|+|.++...+..+ .+|.++|+..+...|....... ....+.|.+|.++..|.|++.|.|..
T Consensus         1 P~~P~~~~~~~~~~sv~l~W~pP~~~~g~i-~~Y~i~~~~~~~~~~~~~~~~~-~~~~~~i~~L~p~t~Y~~~V~A~n~~   78 (94)
T d2dn7a1           1 PGRPTMMISTTAMNTALLQWHPPKELPGEL-LGYRLQYCRADEARPNTIDFGK-DDQHFTVTGLHKGTTYIFRLAAKNRA   78 (94)
T ss_dssp             CCCCEEEEEECSTTEEEEEEECCSSCSSCC-CEEEEEEEETTCSSCEEEEEET-TCCEEEEECCCTTCEEEEEEEEEETT
T ss_pred             CCCCcEeEEEEeCCEEEEEEeCCCCCCCce-EEEEEEEEEcCCCCcEEEEcCC-CccEEEEEccCCeeEEEEEEEEEcCC
Confidence            455665556667789999999887766654 7999999988877777665443 66789999999999999999999999


Q ss_pred             CCCCCCCcE
Q psy535          326 GDGMLSNIV  334 (460)
Q Consensus       326 G~~~~s~~~  334 (460)
                      |.|..+...
T Consensus        79 G~g~~s~~~   87 (94)
T d2dn7a1          79 GLGEEFEKE   87 (94)
T ss_dssp             EEEEEEEEE
T ss_pred             cCCCCccEE
Confidence            998776543

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=7.5e-10  Score=76.45  Aligned_cols=93  Identities=27%  Similarity=0.302  Sum_probs=72.0

Q ss_pred             CCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN  323 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n  323 (460)
                      +|.+|..+.. .....++.|.|.++...+... ..|.++|+..+...+...... .....++|.+|.++..|.|++.|.|
T Consensus         3 ~P~~p~~~~~~~~s~~si~v~W~~P~~~~g~i-~~Y~v~y~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~a~n   80 (98)
T d1x5la1           3 APSQVVVIRQERAGQTSVSLLWQEPEQPNGII-LEYEIKYYEKDKEMQSYSTLK-AVTTRATVSGLKPGTRYVFQVRART   80 (98)
T ss_dssp             CCCCCCCEECSCBCSSCEEEEECCCSCCCSCC-CEEEEEEEESSSCCSSCEEEE-ESSSEEEECSCCTTCEEEECEEEEE
T ss_pred             CCCCCCceEEEeccCCEEEEEEECCCCCCCCE-EEEEEEeecccccceeeEEec-CCceEEEECCCCCCCEEEEEEEEEc
Confidence            4566666654 566789999999877666544 799999987665433332222 2567899999999999999999999


Q ss_pred             CCCCCCCCCcEEEEcc
Q psy535          324 ELGDGMLSNIVVVKTK  339 (460)
Q Consensus       324 ~~G~~~~s~~~~~~~~  339 (460)
                      ..|.|.+|..+.++|.
T Consensus        81 ~~G~g~~S~~v~~~T~   96 (98)
T d1x5la1          81 SAGCGRFSQAMEVETG   96 (98)
T ss_dssp             TTEECCCCCCEEEECC
T ss_pred             CCCCcCCCCCEEEEcC
Confidence            9999999999999875

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.05  E-value=5.8e-10  Score=75.09  Aligned_cols=74  Identities=12%  Similarity=0.164  Sum_probs=56.3

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccceee-eeeEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATIV-QAAQLVV  241 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~-~~~~l~v  241 (460)
                      .+..|+.++|.|.+.  .+.|.+.+.|++++ ..+.   ....+..|.|.++..+|+|.|.|.|.|..|... ..+.|.|
T Consensus        13 ~v~eG~~v~L~C~~~--~~~p~~~~~W~kng-~~~~---~~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV   86 (89)
T d1fnla2          13 VFKEEDPIHLRCHSW--KNTALHKVTYLQNG-KDRK---YFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI   86 (89)
T ss_dssp             EEETTCCEEEEEEEC--TTCCCEEEEEEETT-EEEE---EEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             eEccCCeEEEEEEec--CCCCCcEEEEEEcc-cccc---eeccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEE
Confidence            467899999999973  46677799999944 3321   223456899999999999999999999888643 4566666


Q ss_pred             e
Q psy535          242 E  242 (460)
Q Consensus       242 ~  242 (460)
                      .
T Consensus        87 ~   87 (89)
T d1fnla2          87 T   87 (89)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=2e-09  Score=73.36  Aligned_cols=90  Identities=20%  Similarity=0.306  Sum_probs=69.4

Q ss_pred             CCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN  323 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n  323 (460)
                      +|..|.++.. .....++.|+|.++..........|.+.++..+.. +... .   ....++|.+|.+++.|.|+|.|.|
T Consensus         2 ~p~~p~~L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~-~~~~-~---~~t~~~i~~L~p~t~Y~~rV~A~n   76 (94)
T d1x5aa1           2 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEE-WHQM-V---LEPRVLLTKLQPDTTYIVRVRTLT   76 (94)
T ss_dssp             CCCCSCCCCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSCE-EEEE-E---SSSEEEEESCCSSCEEEEEEEEEC
T ss_pred             cCCCCCceEEEEcCCCEEEEEEecccCCCCCcEEEEEEEEecCCce-EEEe-e---ccCEEEECCCCCCCEEEEEEEEEc
Confidence            4666666664 56778999999987544444446899988876543 2222 1   357899999999999999999999


Q ss_pred             CCCCCCCCCcEEEEcc
Q psy535          324 ELGDGMLSNIVVVKTK  339 (460)
Q Consensus       324 ~~G~~~~s~~~~~~~~  339 (460)
                      ..|.|..|..+.++|.
T Consensus        77 ~~G~g~~S~~~~~~T~   92 (94)
T d1x5aa1          77 PLGPGPFSPDHEFRTS   92 (94)
T ss_dssp             SSSCCCCCCCEEEECC
T ss_pred             CCcCcCCCCCEEEEeC
Confidence            9999999999999875

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=6.8e-10  Score=76.41  Aligned_cols=92  Identities=23%  Similarity=0.258  Sum_probs=70.4

Q ss_pred             CCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCC
Q psy535          247 HAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG  326 (460)
Q Consensus       247 ~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G  326 (460)
                      .++..........+++|.|.++...++. +..|.+.++......+...... .....+.+.+|.+++.|.|++.|.|..|
T Consensus         3 ~~~~l~~~~~t~~si~l~W~~p~~~~g~-i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~n~~G   80 (95)
T d2djsa1           3 TVPIMHQVSATMRSITLSWPQPEQPNGI-ILDYEIRYYEKEHNEFNSSMAR-SQTNTARIDGLRPGMVYVVQVRARTVAG   80 (95)
T ss_dssp             CCSCCEEEEECSSEEEEECCCCSCCSSC-EEEEEEEEEETTSCSTTCEEEE-ESSSEEEEESCCTTCEEEEEEEEEESSC
T ss_pred             CCCccEEEeecCCEEEEEEEECCCCCcc-eEEeeeeeeeeccCcceeEeec-CCccEEEEeecCCccEEEEEEEEEcCCC
Confidence            3344334566788999999988766664 5789898887765444333222 2567899999999999999999999999


Q ss_pred             CCCCCCcEEEEccC
Q psy535          327 DGMLSNIVVVKTKG  340 (460)
Q Consensus       327 ~~~~s~~~~~~~~~  340 (460)
                      .|.+|..+.++|..
T Consensus        81 ~g~~S~~~~~~T~~   94 (95)
T d2djsa1          81 YGKFSGKMCFQTLT   94 (95)
T ss_dssp             EEEECCCEEEECCC
T ss_pred             CCCCCCCEEEEeCC
Confidence            99999999988763

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.3e-10  Score=80.79  Aligned_cols=94  Identities=23%  Similarity=0.256  Sum_probs=73.7

Q ss_pred             CCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeee-ccCCCCceEEEccCccCccEEEEEEEEc
Q psy535          245 QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP-VTPPGSTQITINRLTPATTYEFQVVGKN  323 (460)
Q Consensus       245 ~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~~~~~~~~~~a~n  323 (460)
                      .+.+|.++.......++.|+|.++...+.+ +.+|+++|+.... .|.... ........+.|.+|.++..|.|++.|.|
T Consensus         7 ~~sPP~~~~~~~t~~si~l~W~pp~~~~~~-i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n   84 (108)
T d1v5ja_           7 GLSPPRGLVAVRTPRGVLLHWDPPELVPKR-LDGYVLEGRQGSQ-GWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFA   84 (108)
T ss_dssp             CCCCCEEEEEEECSSSEEEEEECCSCCSSC-CCBEEEEEEETTC-CCEEEEEEECSSCCEEECCCCCTTSCEECCBEEEE
T ss_pred             CCCcCCCeEEEEcCCEEEEEEEecccCCCc-eeEEEEEeeeeee-eeeeccccccceeeeEEEEeccCCcEEEEEEEEEe
Confidence            456788877766778999999988766554 4799999987654 343332 2333567899999999999999999999


Q ss_pred             CCCCCCCCCcEEEEccC
Q psy535          324 ELGDGMLSNIVVVKTKG  340 (460)
Q Consensus       324 ~~G~~~~s~~~~~~~~~  340 (460)
                      ..|.+.+|..+.+++.+
T Consensus        85 ~~g~s~~S~~~~~~T~~  101 (108)
T d1v5ja_          85 GSFVSDPSNTANVSTSG  101 (108)
T ss_dssp             TTEEEEECSCCCCCCSS
T ss_pred             CCCEeCCcCceEEECCC
Confidence            99999999888887754

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.3e-10  Score=81.89  Aligned_cols=76  Identities=24%  Similarity=0.464  Sum_probs=60.0

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC------------cccEEEecceEEEccccceeceEEEEEEeccc
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP------------KNRVKIVGGNITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~------------~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      .+..|+++.|.|.+   .|.|.|.+.|++++.....            ..+....+++|.|.++...|.|.|+|.|.|..
T Consensus        15 ~v~~g~~v~L~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   91 (105)
T d1nbqa1          15 RIPENNPVKLSCAY---SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEG   91 (105)
T ss_dssp             CEETTCCCEEECEE---ESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETT
T ss_pred             EEeCCCeEEEEEEe---CCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECC
Confidence            67889999999999   7899999999985543221            12333345689999999999999999999999


Q ss_pred             ceeeeeeEEEE
Q psy535          231 ATIVQAAQLVV  241 (460)
Q Consensus       231 g~~~~~~~l~v  241 (460)
                      |.......+.+
T Consensus        92 G~~~~~~~v~v  102 (105)
T d1nbqa1          92 GNSYGEVKVKL  102 (105)
T ss_dssp             SSCEECCEEEC
T ss_pred             CCEEEEEEEEE
Confidence            98876665544

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.05  E-value=4.3e-10  Score=78.17  Aligned_cols=88  Identities=16%  Similarity=0.222  Sum_probs=68.3

Q ss_pred             CCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCee-eeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535          245 QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWL-PIPVTPPGSTQITINRLTPATTYEFQVVGKN  323 (460)
Q Consensus       245 ~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n  323 (460)
                      .|.+|..+.......++.|+|.++.+++.++ .+|.++++......+. ...........+.+.+|.+++.|.|++.|.|
T Consensus         5 vP~~P~~~~v~~~~~sv~lsW~pp~~~~~~i-~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV~A~n   83 (100)
T d1cfba1           5 VPNAPKLTGITCQADKAEIHWEQQGDNRSPI-LHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFN   83 (100)
T ss_dssp             CCCCCEEEEEEECSSEEEEEEECCCCTTSCC-CEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEEEEEEEEEE
T ss_pred             CCCcCcCcEEEEcCCEEEEEEcCCcccccce-EEEEEEEecCCCCceeeEEeeecCCceEEEEecCCCCCEEEEEEEEEe
Confidence            5788888877777789999999987766554 7999999877654433 3222223556788999999999999999999


Q ss_pred             CCCCCCCCCc
Q psy535          324 ELGDGMLSNI  333 (460)
Q Consensus       324 ~~G~~~~s~~  333 (460)
                      ..|.|.+|..
T Consensus        84 ~~G~g~~S~~   93 (100)
T d1cfba1          84 KIGASPPSAH   93 (100)
T ss_dssp             TTEECCCCCC
T ss_pred             CCcCCCCcCC
Confidence            9999887754

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=6.7e-10  Score=76.42  Aligned_cols=86  Identities=21%  Similarity=0.325  Sum_probs=60.4

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEE--cCCCccCCcccEE-Ee----cceEEEccccceeceEEE
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQ--RRDGVALPKNRVK-IV----GGNITIEGLRRVDFGYYE  223 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~--~~~~~~~~~~~~~-~~----~~~l~i~~~~~~~~g~y~  223 (460)
                      .|.|. .+.+. .+..|+++.|.|.+   .|.|.|.+.|+  ..++......+.. ..    .++|.|.++...|+|.|+
T Consensus         2 ~P~f~-~~~~~-~v~~G~~v~l~C~~---~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   76 (96)
T d2c9aa1           2 TPHFL-RIQNV-EVNAGQFATFQCSA---IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYR   76 (96)
T ss_dssp             SCEEC-CCCCE-EECSSSCEEEEEEE---ESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEE
T ss_pred             cCeec-ccCCE-EEeCCCEEEEEEEE---eecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEE
Confidence            45664 45555 78999999999999   78887765543  2233333322222 11    246999999999999999


Q ss_pred             EEEecccceeeee-eEEEE
Q psy535          224 CVVSNEVATIVQA-AQLVV  241 (460)
Q Consensus       224 C~a~n~~g~~~~~-~~l~v  241 (460)
                      |.|.|..|...+. ..|.|
T Consensus        77 C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          77 CMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEeCCCeEEEEEEEEEE
Confidence            9999999986444 57766

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.7e-11  Score=85.73  Aligned_cols=98  Identities=19%  Similarity=0.352  Sum_probs=71.1

Q ss_pred             EEeeCCCceeeCCCcccccCCCCeEEEEeeeeccCC-CCCCeeEEEcCCCccCCc--ccEEEe--------cceEEEccc
Q psy535          146 VLVRKPPAFTIKPEAMYQRKVGESVDMHCEAQEAEG-TQKPTITWQRRDGVALPK--NRVKIV--------GGNITIEGL  214 (460)
Q Consensus       146 v~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~p~~~~~W~~~~~~~~~~--~~~~~~--------~~~l~i~~~  214 (460)
                      |.|..||.+.. +... .+..|+.+.|.|.+   .+ .|.+.+.|++++..+...  .++...        ...|.|.++
T Consensus         2 L~V~~Pp~i~~-~~~~-~~~~G~~~~l~C~v---~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v   76 (115)
T d2crya1           2 LTVNGPPIISS-TQTQ-HALHGEKGQIKCFI---RSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNI   76 (115)
T ss_dssp             CCCCSSCCEEE-ECCC-CCCTTSCCCCCEEE---CCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTC
T ss_pred             eEEecCCEEec-CCCE-EEecCCEEEEEEEe---ecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEecc
Confidence            45677888764 4444 67899999999999   56 456689999966544332  222221        125899999


Q ss_pred             ccee-ceEEEEEEecccceeeeeeEEEEecCCCCC
Q psy535          215 RRVD-FGYYECVVSNEVATIVQAAQLVVEGTQPHA  248 (460)
Q Consensus       215 ~~~~-~g~y~C~a~n~~g~~~~~~~l~v~~~~p~~  248 (460)
                      ...| +|.|+|.|.|..|.....+.|.|.......
T Consensus        77 ~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~~~~~~~  111 (115)
T d2crya1          77 VRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSG  111 (115)
T ss_dssp             CHHHHHSCEEEEEECSSCEEEEEECCCCSCSSCCC
T ss_pred             chhcCCeEEEEEEEECCCeEEEEEEEEEECCCCCC
Confidence            9998 699999999999999999888886543333

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=9.6e-10  Score=77.10  Aligned_cols=95  Identities=25%  Similarity=0.344  Sum_probs=73.1

Q ss_pred             CCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEE
Q psy535          244 TQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK  322 (460)
Q Consensus       244 ~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~  322 (460)
                      .+|.+|..+.. .....++.|+|.++..++.+ +..|.++++......+.... .......+.+.+|.+++.|.|++.|.
T Consensus         9 ~~P~~P~~~~~~~~~~~sv~l~W~pp~~~~~~-i~~Y~i~~~~~~~~~~~~~~-~~~~~~~~~~~~L~p~t~Y~frV~A~   86 (105)
T d1x3da1           9 CEPDIPNPPRIANRTKNSLTLQWKAPSDNGSK-IQNFVLEWDEGKGNGEFCQC-YMGSQKQFKITKLSPAMGCKFRLSAR   86 (105)
T ss_dssp             SCCCCCCCCEEEEEETTEEEEECCCCCCCSSC-EEEEEEEECTTTSSSCCEEE-EEESCSEEEEESCCTTCEEEEECCEE
T ss_pred             CCCcCCCCCEEEEccCCEEEEEEECCCCCcCc-cEEEEEEEecCCCcceeEEE-ecCCccEEEecCCcCCcEEEEEEEEE
Confidence            46677777664 46778999999998776654 57999988866544332222 22256789999999999999999999


Q ss_pred             cCCCCCCCCCcEEEEccC
Q psy535          323 NELGDGMLSNIVVVKTKG  340 (460)
Q Consensus       323 n~~G~~~~s~~~~~~~~~  340 (460)
                      |..|.|.+|..+.+.|.+
T Consensus        87 N~~G~s~~S~~~~~~T~g  104 (105)
T d1x3da1          87 NDYGTSGFSEEVLYYTSG  104 (105)
T ss_dssp             ESSCBCCCCCCEEEECSC
T ss_pred             CCCeEcCCCCcEEEECCC
Confidence            999999999999888753

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.02  E-value=1.3e-10  Score=80.31  Aligned_cols=85  Identities=26%  Similarity=0.457  Sum_probs=59.3

Q ss_pred             CCceeeCCCcccccC---CCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC--cccEEEe-cceEEEccccceeceEEEE
Q psy535          151 PPAFTIKPEAMYQRK---VGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--KNRVKIV-GGNITIEGLRRVDFGYYEC  224 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~--~~~~~~~-~~~l~i~~~~~~~~g~y~C  224 (460)
                      +|.+...|... .+.   .++.+.|.|.+   .|.|.|.+.|++++..+..  ....... +..|.+..+...|.|.|+|
T Consensus         4 ~P~f~~~P~~~-~~~~g~~~~~v~l~C~~---~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   79 (97)
T d1cs6a1           4 GPVFEEQPAHT-LFPEGSAEEKVTLTCRA---RANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQC   79 (97)
T ss_dssp             EEEEEECCCCE-EEETTCSCCEEEECCEE---EEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEE
T ss_pred             CCEEEEeCCCE-EEECccCCCeEEEEEEE---EEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEE
Confidence            45566666554 233   45799999999   7899999999995543322  2233333 3357778889999999999


Q ss_pred             EEecccceee-eeeEE
Q psy535          225 VVSNEVATIV-QAAQL  239 (460)
Q Consensus       225 ~a~n~~g~~~-~~~~l  239 (460)
                      .|.|..|... ....|
T Consensus        80 ~a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          80 VATNARGTVVSREASL   95 (97)
T ss_dssp             EEEETTEEEECCCEEE
T ss_pred             EEEECCCEEEEEEEEE
Confidence            9999999863 34444

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.1e-09  Score=77.14  Aligned_cols=93  Identities=22%  Similarity=0.344  Sum_probs=69.7

Q ss_pred             CCCCCCce-e-eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEE
Q psy535          245 QPHAPYNI-T-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK  322 (460)
Q Consensus       245 ~p~~p~~~-~-~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~  322 (460)
                      .|.+|... . ......++.|+|.++...+..++..|.++++......+...... .....+.+.+|.+++.|.|++.|.
T Consensus        10 ~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~rV~A~   88 (107)
T d2crma1          10 KPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYS-GATREHLCDRLNPGCFYRLRVYCI   88 (107)
T ss_dssp             CCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEEC-SSCSEEEECSCCTTSCEEEEEEEE
T ss_pred             CCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEEeec-CCccEEEEeccCCCCEEEEEEEEE
Confidence            35555542 2 34567899999998776665556899999887665544433322 256789999999999999999999


Q ss_pred             cCCCCCCCCCcEEEEc
Q psy535          323 NELGDGMLSNIVVVKT  338 (460)
Q Consensus       323 n~~G~~~~s~~~~~~~  338 (460)
                      |..|.|.+|..+.+++
T Consensus        89 n~~G~s~~S~~v~v~T  104 (107)
T d2crma1          89 SDGGQSAVSESLLVQT  104 (107)
T ss_dssp             ETTEECCCCCCCCCCC
T ss_pred             CCCcCcCCCCcEEEEC
Confidence            9999999998877654

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.01  E-value=2.8e-10  Score=79.69  Aligned_cols=79  Identities=16%  Similarity=0.276  Sum_probs=59.4

Q ss_pred             eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC--cccEEE--ecceEEEccccceeceEEEEEEecccc
Q psy535          156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP--KNRVKI--VGGNITIEGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~--~~~~~~--~~~~l~i~~~~~~~~g~y~C~a~n~~g  231 (460)
                      ..+.....+..|+.+.|.|.+.  .+.|.+.+.|++++.....  ..+...  .+++|.|.++...|+|.|+|.|.|..|
T Consensus         8 ~~~~~~v~v~eG~~~~l~C~~~--~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g   85 (105)
T d1cs6a2           8 AEERDPVKITEGWGVMFTCSPP--PHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID   85 (105)
T ss_dssp             SSCCCCEEEETTSCEEECCCCC--SEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEET
T ss_pred             CCCCCCEEEeCCCeEEEEEEcc--CCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCC
Confidence            3444434788999999999873  6789999999996554332  222222  355799999999999999999999988


Q ss_pred             eeeee
Q psy535          232 TIVQA  236 (460)
Q Consensus       232 ~~~~~  236 (460)
                      ....+
T Consensus        86 ~~~~~   90 (105)
T d1cs6a2          86 FITKS   90 (105)
T ss_dssp             TEEEE
T ss_pred             CEEEE
Confidence            76554

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.2e-10  Score=79.08  Aligned_cols=87  Identities=15%  Similarity=0.216  Sum_probs=61.8

Q ss_pred             CCCCcceEEEeecceEEEEecCCCCCCccceEEEEEEEEcC--CeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          343 PGPPRNVSVTEVNNGFVISWQPPLERASLIQYYLIKYRTDG--SWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       343 P~~p~~~~~~~~~~~v~l~W~~~~~~~~~i~~y~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      | +|.++++........|+|++|...++ ...|.|+|+..+  .|.....                        ......
T Consensus         5 P-~P~nv~~~s~n~~~~L~W~pp~~~g~-~~~Y~Ve~~~~~~~~W~~v~~------------------------c~~~t~   58 (99)
T d1y6kr1           5 P-SPPSVWFEAEFFHHILHWTPIPQQSE-STCYEVALLRYGIESWNSISQ------------------------CSQTLS   58 (99)
T ss_dssp             C-CCSCEEEEEETTEEEEEECCCTTCCT-TCEEEEEEEETTSCCCEEEEE------------------------EESSSE
T ss_pred             C-CCCcceEEEECCEEEEEEcCCCCcCC-CCEEEEEEEECCCcceEEEEe------------------------eccccc
Confidence            5 46799988777789999998877554 467999999754  2443211                        001111


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCCCCCCcee
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNIV  455 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~  455 (460)
                      ....+.+.+|.++..|.|||+|.|..|.|.|++.-
T Consensus        59 ~~~~~~~~~l~~~~~Y~fRVrA~n~~g~S~Ws~t~   93 (99)
T d1y6kr1          59 YDLTAVTLDLYHSNGYRARVRAVDGSRHSQWTVTN   93 (99)
T ss_dssp             EECGGGGTTGGGSSCEEEEEEEEETTEECCCEECS
T ss_pred             cceeeeeeecCCCCEEEEEEEEEcCCCcCCCcccC
Confidence            12345578999999999999999999999887643

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7.5e-10  Score=74.59  Aligned_cols=75  Identities=16%  Similarity=0.132  Sum_probs=57.0

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEeccccee-eeeeEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATI-VQAAQLVV  241 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~-~~~~~l~v  241 (460)
                      .+..|+.++|.|.+.  .+.+...+.|++++ ..+...   .....|.|.+++.+|+|.|.|.|.|..+.. +..+.|.|
T Consensus        11 ~V~eG~~v~L~C~~~--~~~~~~~~~w~k~g-~~~~~~---~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V   84 (89)
T d1f2qa2          11 VVMEGQPLFLRCHGW--RNWDVYKVIYYKDG-EALKYW---YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITV   84 (89)
T ss_dssp             EEETTSCEEEEEEEG--GGCCEEEEEEEETT-EECCSC---CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             eEeCCCEEEEEEEec--CCCCCeEEEEEEee-eccccc---cccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEE
Confidence            567899999999984  44466799999944 443321   134679999999999999999999988764 35567777


Q ss_pred             ec
Q psy535          242 EG  243 (460)
Q Consensus       242 ~~  243 (460)
                      ..
T Consensus        85 ~~   86 (89)
T d1f2qa2          85 IK   86 (89)
T ss_dssp             EC
T ss_pred             Ee
Confidence            75

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8.8e-10  Score=77.65  Aligned_cols=86  Identities=13%  Similarity=0.265  Sum_probs=61.3

Q ss_pred             CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc--E----EE----------ecceEEEcccc
Q psy535          152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR--V----KI----------VGGNITIEGLR  215 (460)
Q Consensus       152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~--~----~~----------~~~~l~i~~~~  215 (460)
                      |.+.........+..|+.+.|.|.+   .+.|.|.+.|++++........  .    ..          ....|.|.++.
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v---~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   78 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNV---TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE   78 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEE---EECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCC
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEe---ccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecc
Confidence            3333333333367889999999999   7999999999985432221111  0    00          12369999999


Q ss_pred             ceece-EEEEEEecccceeeeeeEEE
Q psy535          216 RVDFG-YYECVVSNEVATIVQAAQLV  240 (460)
Q Consensus       216 ~~~~g-~y~C~a~n~~g~~~~~~~l~  240 (460)
                      ..|.| .|+|.|.|..|.....+.|.
T Consensus        79 ~~D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          79 SRFYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             hHHCCcEEEEEEEeCCCeEEEEEEEE
Confidence            99999 59999999999988877664

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.2e-09  Score=76.40  Aligned_cols=77  Identities=18%  Similarity=0.322  Sum_probs=57.7

Q ss_pred             ccCCCCeEEEEeeeeccCCCC-CCeeEEEcCCCccCC---cccEEEe------cceEEEccccceeceEEEEEEecccce
Q psy535          163 QRKVGESVDMHCEAQEAEGTQ-KPTITWQRRDGVALP---KNRVKIV------GGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p-~~~~~W~~~~~~~~~---~~~~~~~------~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      .+..|+++.|.|.+   .|.| .|.+.|++++.....   .......      ...|.|.++..+|.|.|+|.|.|..|.
T Consensus        14 ~v~~G~~v~L~C~v---~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   90 (104)
T d2aw2a1          14 SILAGDPFELECPV---KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNL   90 (104)
T ss_dssp             EEETTSCEEEEEEE---ECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EEeCCCeEEEEEEE---EeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCe
Confidence            67899999999999   6877 589999996654421   1112111      124899999999999999999999997


Q ss_pred             ee-eeeEEEEe
Q psy535          233 IV-QAAQLVVE  242 (460)
Q Consensus       233 ~~-~~~~l~v~  242 (460)
                      .. .+..|.|.
T Consensus        91 ~~s~~~~l~V~  101 (104)
T d2aw2a1          91 IESHSTTLYVT  101 (104)
T ss_dssp             EECCCEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            54 45666664

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=3.3e-10  Score=77.55  Aligned_cols=71  Identities=17%  Similarity=0.183  Sum_probs=50.9

Q ss_pred             eeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCcc----------ccccEEE-eecCeEEEeecCCCCCeEEEEEEEc
Q psy535           65 VQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPY----------QTKDIVV-MQNGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~----------~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      ......|++|+|.|.+.. |.+ .|.|++++..+...          ...+... ..+++|.|.+++.+|+|.|+|.+.|
T Consensus         4 ~v~~~~G~sVtl~c~~~~-p~~-~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSNV-PLK-EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEETTCCEEECCCCSS-CCS-CEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             EEEEEECCCEEEEecCCC-CCc-EEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            456678999999998643 444 79999988765321          1122222 2345799999999999999999987


Q ss_pred             CCCC
Q psy535          134 AHGT  137 (460)
Q Consensus       134 ~~g~  137 (460)
                      ..+.
T Consensus        82 ~~~t   85 (93)
T d1ccza1          82 ITDT   85 (93)
T ss_dssp             CCSC
T ss_pred             CCcE
Confidence            6554

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.3e-09  Score=78.50  Aligned_cols=101  Identities=21%  Similarity=0.271  Sum_probs=74.7

Q ss_pred             CCCCCCceee-eeecceEEEEeecCCCCC-CCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEE
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGYSGG-PDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK  322 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~  322 (460)
                      |..+|.++.. .....++.|.|.++.... ...+.+|.+.|+..+...+............+.|.+|.+++.|.|++.|.
T Consensus        11 P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   90 (119)
T d1x5ha1          11 PSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAAL   90 (119)
T ss_dssp             CCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSCEEEEECEEE
T ss_pred             CCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeeecCCCccEEEeCCCCCCCEEEEEEEEE
Confidence            3356777765 345678999999764322 22457899999877655444433334456789999999999999999999


Q ss_pred             cCCCCCCCCCcEEEEccCCCCCC
Q psy535          323 NELGDGMLSNIVVVKTKGPKPGP  345 (460)
Q Consensus       323 n~~G~~~~s~~~~~~~~~~~P~~  345 (460)
                      |..|.|.+|..+.++|.+..|.+
T Consensus        91 n~~G~G~~S~~~~~~T~~~~~~~  113 (119)
T d1x5ha1          91 TINGTGPATDWLSAETFESDLDE  113 (119)
T ss_dssp             ETTEEEEECCCEEEECCSSCCCC
T ss_pred             cCCcCCCCCCCEEEEeCCCCCCC
Confidence            99999999999999887654443

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.5e-09  Score=76.04  Aligned_cols=75  Identities=12%  Similarity=0.190  Sum_probs=55.4

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE--e---------cceEEEccccceeceEEEEEEecccceeee
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI--V---------GGNITIEGLRRVDFGYYECVVSNEVATIVQ  235 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~--~---------~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  235 (460)
                      +....+.|.+   .|.|.|.+.|++++..+....+...  .         ...|.|.++...|.|.|+|.|.|..|....
T Consensus        15 ~~~~ci~~~v---~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~   91 (107)
T d1he7a_          15 MHHWCIPFSV---DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA   91 (107)
T ss_dssp             CCEEEEEEEE---CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred             EEEEEEEEEE---EEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEE
Confidence            3334455577   8999999999995543333332221  1         135899999999999999999999999999


Q ss_pred             eeEEEEecC
Q psy535          236 AAQLVVEGT  244 (460)
Q Consensus       236 ~~~l~v~~~  244 (460)
                      .+.+.+...
T Consensus        92 ~i~v~v~~~  100 (107)
T d1he7a_          92 SIMAAFMDN  100 (107)
T ss_dssp             EEEECCCSC
T ss_pred             EEEEEEEcC
Confidence            888887753

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=3.5e-09  Score=74.40  Aligned_cols=87  Identities=31%  Similarity=0.521  Sum_probs=65.5

Q ss_pred             CCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCC-CCeeeeec-cCCCCceEEEccCccCccEEEEEEE
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN-KDWLPIPV-TPPGSTQITINRLTPATTYEFQVVG  321 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~i~~l~~~~~~~~~~~a  321 (460)
                      ||.+|..+.. .....++.|+|.|+.+++.+ +.+|.+.|+.... ..|..... .......+.+.+|.+++.|.|+|.|
T Consensus        10 pP~~P~~~~v~~~~~~sv~l~W~p~~~~g~~-I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A   88 (108)
T d1x4za1          10 PPEAPDRPTISTASETSVYVTWIPRGNGGFP-IQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRA   88 (108)
T ss_dssp             CCCCCCCCEEEECCSSEEEEECCCCCCTTSC-CCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEEEE
T ss_pred             CCccCCCCEEEEccCCEEEEEEECCCCCCCc-cEEEEEEEEecCCCCceEEEEEeecCCccEEEECCCCCCCEEEEEEEE
Confidence            5777766553 45677999999987665554 4799999887554 45544332 2335678999999999999999999


Q ss_pred             EcCCCCCCCCC
Q psy535          322 KNELGDGMLSN  332 (460)
Q Consensus       322 ~n~~G~~~~s~  332 (460)
                      .|..|.|.+|.
T Consensus        89 ~N~~G~s~~S~   99 (108)
T d1x4za1          89 LNMLGESEPSA   99 (108)
T ss_dssp             EETTEECCCCC
T ss_pred             ECCCcCCCCCC
Confidence            99999887664

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.1e-09  Score=74.11  Aligned_cols=73  Identities=19%  Similarity=0.365  Sum_probs=55.7

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc-cEE-EecceEEEccccceeceEEEEEEecccceeeeeeEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN-RVK-IVGGNITIEGLRRVDFGYYECVVSNEVATIVQAAQL  239 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~-~~~-~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~l  239 (460)
                      .+..|+++.|.|.+   .+ +.|.+.|++++..+.... +.. ..++.|.|.++..+|+|.|+|.|.|..|.......+
T Consensus         8 ~~~~G~~~~l~C~~---~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l   82 (92)
T d1olza1           8 FFKHGGTAELKCSQ---KS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVV   82 (92)
T ss_dssp             EEETTSCEEECCCC---SC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred             eEeCCCEEEEEEEe---ec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEE
Confidence            57899999999998   56 678999999665544322 222 245689999999999999999999988865544433

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.94  E-value=4.2e-09  Score=72.19  Aligned_cols=86  Identities=20%  Similarity=0.309  Sum_probs=65.0

Q ss_pred             CCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCC-CCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535          246 PHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN-KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN  323 (460)
Q Consensus       246 p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n  323 (460)
                      +.+|..+.. .....++.|+|.++.......+.+|.+.|+..+. ..|............+.|.+|.+++.|.|++.|.|
T Consensus         7 ~~~P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   86 (95)
T d2ibga1           7 MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFS   86 (95)
T ss_dssp             CCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEEC
T ss_pred             CCCCcCeEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccCCceeEEEEeeccCCeEEEEEEEEEe
Confidence            345555553 4556799999997655555556899999987654 44555444444677899999999999999999999


Q ss_pred             CCCCCCCC
Q psy535          324 ELGDGMLS  331 (460)
Q Consensus       324 ~~G~~~~s  331 (460)
                      ..|.|.+|
T Consensus        87 ~~G~s~~S   94 (95)
T d2ibga1          87 AASASEFS   94 (95)
T ss_dssp             SSCBCCCC
T ss_pred             CCccCCCC
Confidence            99998776

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=8.1e-10  Score=77.13  Aligned_cols=79  Identities=15%  Similarity=0.188  Sum_probs=55.1

Q ss_pred             eecceeeEEEEEEEecCCCCCeEEEeeCCeec-----------------CccccccEEEeecCeEEEeecCCCCCeEEEE
Q psy535           67 YLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL-----------------EPYQTKDIVVMQNGSLLFTRVNQNHQGRYTC  129 (460)
Q Consensus        67 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~-----------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  129 (460)
                      .+.+|++|.|.|...... ...+.|+|+....                 .+....|..+..+++|.|.+++.+|+|.|+|
T Consensus        10 ~v~~G~~V~L~c~~~p~~-~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c   88 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLA-LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL   88 (107)
T ss_dssp             SCCTTCCEEEEEESCCTT-CSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             cccCCCCEEEEecCCCCC-ceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEE
Confidence            356899999999743322 3479999854321                 1122457788888999999999999999999


Q ss_pred             EEEcCCCCcceeeEEEEE
Q psy535          130 TPYNAHGTQGSSGQMEVL  147 (460)
Q Consensus       130 ~~~~~~g~~~~~~~~~v~  147 (460)
                      .+.+..+.. ..+.+.|.
T Consensus        89 ~v~~~~~~~-~~~~v~L~  105 (107)
T d1l6za1          89 DMTDENYRR-TQATVRFH  105 (107)
T ss_dssp             EEEETTEEE-CCCCEEEC
T ss_pred             EEEECCCCE-EEEEEEEE
Confidence            998765432 23334443

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.6e-09  Score=75.49  Aligned_cols=92  Identities=23%  Similarity=0.392  Sum_probs=71.3

Q ss_pred             CCCCCCCceeee-eecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEE
Q psy535          244 TQPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK  322 (460)
Q Consensus       244 ~~p~~p~~~~~~-~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~  322 (460)
                      ..|.+|.++... ....++.|+|.++..+   .+.+|.+.|+......+......  ....+.|.+|.+++.|.|++.|.
T Consensus         9 ~vP~~P~~~~~~~~~~~si~l~W~~p~~~---~i~~Y~i~y~~~~~~~~~~~~~~--~~~~~~i~~L~p~t~Y~~~V~A~   83 (102)
T d1x5za1           9 GVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRITIE--PGTSYRLQGLKPNSLYYFRLAAR   83 (102)
T ss_dssp             CCCCCCEEEEEECSSSSEEEEEEECCSCC---CCCEEEECBEESSSCCCBCCEEC--SSSEEEEECCCTTCEEEECEEEE
T ss_pred             CCCcCCCCeEEEEccCCEEEEEEECCCCC---CccceEEEEEeCCCCceEEEEcC--CcCEEEECCCCCCCEEEEEEEEE
Confidence            456777777654 4567999999987532   24789999988766554444332  45689999999999999999999


Q ss_pred             cCCCCCCCCCcEEEEccC
Q psy535          323 NELGDGMLSNIVVVKTKG  340 (460)
Q Consensus       323 n~~G~~~~s~~~~~~~~~  340 (460)
                      |..|.|.+|..+.++|.+
T Consensus        84 n~~G~g~~S~~v~~~T~e  101 (102)
T d1x5za1          84 SPQGLGASTAEISARTMQ  101 (102)
T ss_dssp             CSSCEEEECCCEEEECCC
T ss_pred             cCCCEeCCCCCEEEEcCC
Confidence            999999999999888764

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=9.8e-10  Score=72.73  Aligned_cols=78  Identities=21%  Similarity=0.342  Sum_probs=53.5

Q ss_pred             CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeE-EEcCCCccCCcccEEEecceEEEccccceeceEEEEEEeccc
Q psy535          152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTIT-WQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~-W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      |.+.+.|... .+..|+.++|.|.+   .+.|.+... |++ ++..+..     .+..|.|.++..+|+|.|+|.|.|..
T Consensus         2 P~It~~P~~~-~v~~G~~v~L~C~~---~~~~~~~~~~~~~-~~~~~~~-----~~~~l~i~~v~~~d~G~Y~C~a~~s~   71 (82)
T d1f2qa1           2 PKVSLNPPWN-RIFKGENVTLTCNG---NNFFEVSSTKWFH-NGSLSEE-----TNSSLNIVNAKFEDSGEYKCQHQQVN   71 (82)
T ss_dssp             CCCEEESSCS-EEETTCCEEEECCT---TCC----CCEEEE-TTEECSC-----CSSEEEECSCCGGGCEEEEEECTTSS
T ss_pred             CEEEEcCCCe-EEeCCCeEEEEEEE---eeeeeecceeeee-eeeeeec-----ccceeEECCCChhhCCcEEEEecCCC
Confidence            5666667655 67899999999998   677777544 455 5544432     34579999999999999999998865


Q ss_pred             ceeeeeeEEEE
Q psy535          231 ATIVQAAQLVV  241 (460)
Q Consensus       231 g~~~~~~~l~v  241 (460)
                      ++.  .+.|.|
T Consensus        72 ~S~--~v~l~V   80 (82)
T d1f2qa1          72 ESE--PVYLEV   80 (82)
T ss_dssp             CCC--CEEEEE
T ss_pred             Ccc--cEEEEE
Confidence            543  344444

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.7e-09  Score=75.76  Aligned_cols=95  Identities=25%  Similarity=0.309  Sum_probs=73.1

Q ss_pred             CCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCC-eeeeeccCCCCceEEEccCccCccEEEEEEE
Q psy535          244 TQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD-WLPIPVTPPGSTQITINRLTPATTYEFQVVG  321 (460)
Q Consensus       244 ~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a  321 (460)
                      ..|.+|.++.. .....++.|.|.++...+.. +.+|.+.|+...... +............+.|.+|.+++.|.|++.|
T Consensus        19 ~~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g~-i~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   97 (117)
T d1wfoa1          19 DVPGPPMGILFPEVRTTSVRLIWQPPAAPNGI-ILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITA   97 (117)
T ss_dssp             CCCCCCCCCEEEEECSSEEEEECCCCSCCCSC-CCEEEEEEEESSCCCSCCCEEEECTTCCEEEEESCCSSSEEEEEEEE
T ss_pred             CCCcCCCCcEEEEecCCEEEEEEECCCCCCCc-eEEEeeeeeeccCCCceEeEEecCCceEEEEECCCCCCCEEEEEEEE
Confidence            35777887764 45677999999988776665 479999987766533 3333334446778999999999999999999


Q ss_pred             EcCCCCCCCCCcEEEEcc
Q psy535          322 KNELGDGMLSNIVVVKTK  339 (460)
Q Consensus       322 ~n~~G~~~~s~~~~~~~~  339 (460)
                      .|..|.|.+|..+.+++.
T Consensus        98 ~n~~G~g~~S~~~~~tT~  115 (117)
T d1wfoa1          98 QTRKGWGEAAEALVVTTE  115 (117)
T ss_dssp             ECSSCEEEEEEEEEECCS
T ss_pred             ECCCcCCCCcCCEEEECC
Confidence            999999988887777654

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=8.3e-10  Score=79.62  Aligned_cols=95  Identities=20%  Similarity=0.198  Sum_probs=68.5

Q ss_pred             CCCCCCcee-eeeecceEEEEeecCCCCCCCceeeEEEEEE----ecCCCCeeeeeccCCCCceEEEccCccCccEEEEE
Q psy535          245 QPHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYR----EQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV  319 (460)
Q Consensus       245 ~p~~p~~~~-~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~  319 (460)
                      +|.+|..+. ......++.|.|.++...+...+..|.+.|+    +.....|......  ....+.|.+|.+++.|.|++
T Consensus        15 pp~~P~~p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~~--~~~~~~v~~L~p~t~Y~frV   92 (120)
T d1wfua_          15 PLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTG--YATRHVVEGLEPRTLYKFRL   92 (120)
T ss_dssp             CCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEE--SCSEEEEESCCTTCEEEEEE
T ss_pred             CCCcCCCCEEeEecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeeccc--cccEEeCCCCCCCcEeeEEE
Confidence            455555444 3456789999999876655544456665554    3333455544322  45789999999999999999


Q ss_pred             EEEcCCCCCCCCCcEEEEccCC
Q psy535          320 VGKNELGDGMLSNIVVVKTKGP  341 (460)
Q Consensus       320 ~a~n~~G~~~~s~~~~~~~~~~  341 (460)
                      .|.|..|.+.+|..+.+.+...
T Consensus        93 ~A~n~~G~s~~S~~~~~~T~~~  114 (120)
T d1wfua_          93 KVTSPSGEYEYSPVVSVATTRE  114 (120)
T ss_dssp             EEECSSSCEEECCCEEEECCCC
T ss_pred             EEEeCCcEeCCCCCEEEEeCCC
Confidence            9999999999999999987643

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.5e-08  Score=71.84  Aligned_cols=93  Identities=26%  Similarity=0.479  Sum_probs=70.2

Q ss_pred             CCCCCCceeee---eecceEEEEeecCCCCCCCceeeEEEEEEecCCCC---eeeeeccCCCCceEEEccCccCccEEEE
Q psy535          245 QPHAPYNITGV---ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD---WLPIPVTPPGSTQITINRLTPATTYEFQ  318 (460)
Q Consensus       245 ~p~~p~~~~~~---~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~l~~~~~~~~~  318 (460)
                      |..+|.++...   ....++.|+|.++...+... ..|.+.|+......   |..... ......+.|.+|.++..|.|+
T Consensus        11 P~~pP~~~~v~~~~~~~~sv~v~W~~P~~~~g~i-~~Y~i~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~   88 (111)
T d1x5ka1          11 PTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKI-TGYIIYYSTDVNAEIHDWVIEPV-VGNRLTHQIQELTLDTPYYFK   88 (111)
T ss_dssp             CCSCCEEEEEEECSSCTTCEEEEEECCSCCSSCC-CEEEEEEESCSSSCTTTSEEEEE-STTCSEEEECSCCSSSEEEEE
T ss_pred             CCCCCCCcEEEEecCCCCEEEEEEEccccCCCce-eeeEEeeeecCCCCcceeEEEEe-CCCeeEEEECCCCCCCEEEEE
Confidence            44566665532   35568999999887766654 78988887655432   333332 335678999999999999999


Q ss_pred             EEEEcCCCCCCCCCcEEEEcc
Q psy535          319 VVGKNELGDGMLSNIVVVKTK  339 (460)
Q Consensus       319 ~~a~n~~G~~~~s~~~~~~~~  339 (460)
                      |.|.|..|.|.+|..+.+++.
T Consensus        89 V~A~n~~G~g~~S~~v~~~T~  109 (111)
T d1x5ka1          89 IQARNSKGMGPMSEAVQFRTP  109 (111)
T ss_dssp             EEEECSSCBCCCCCCEEEECC
T ss_pred             EEEEcCCCCcCCCCCEEEECC
Confidence            999999999999999988875

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.89  E-value=1.1e-09  Score=72.95  Aligned_cols=73  Identities=14%  Similarity=0.179  Sum_probs=52.9

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEeccc
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEV  230 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  230 (460)
                      +|.+.+.|... .+..|+.++|.|.+   .+.+.+.+.|+..++..+.     .....|.|.++...|+|.|+|.+.|..
T Consensus         5 kpvi~~~P~~~-~v~~G~~vtL~C~~---~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~~s~   75 (84)
T d1fnla1           5 KAVVFLEPQWY-SVLEKDSVTLKCQG---AYSPEDNSTQWFHNESLIS-----SQASSYFIDAATVNDSGEYRCQTNLST   75 (84)
T ss_dssp             CCEEEEESCCS-EEETTCCEEEEEEC---CCBTTBCCCEEEETTEEEE-----SSCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             CCEEEECCCCc-EEeCCCeEEEEEEe---ccCCCCeEEEEeeeceeee-----ecceeeEecCCcccCCEEEEEEccCCC
Confidence            34555666554 68899999999998   6777775554433543332     234679999999999999999998764


Q ss_pred             ce
Q psy535          231 AT  232 (460)
Q Consensus       231 g~  232 (460)
                      ++
T Consensus        76 ~S   77 (84)
T d1fnla1          76 LS   77 (84)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.4e-09  Score=73.01  Aligned_cols=84  Identities=24%  Similarity=0.402  Sum_probs=59.1

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-ccEEE--ec--ceEEEccccceeceEEEEE
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRVKI--VG--GNITIEGLRRVDFGYYECV  225 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~~~~~--~~--~~l~i~~~~~~~~g~y~C~  225 (460)
                      +|.|.......+.+..|+.+.|.|.+   .+ |.+.+.|++++..+... .+..+  .+  ..|.|.++...|+|.|+|.
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v---~~-p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~   80 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVEL---AD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCV   80 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC---SS-SSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEE
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEE---CC-CCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEE
Confidence            45555444444468899999999997   44 78899999966655443 22332  22  2699999999999999999


Q ss_pred             EecccceeeeeeEEEEe
Q psy535          226 VSNEVATIVQAAQLVVE  242 (460)
Q Consensus       226 a~n~~g~~~~~~~l~v~  242 (460)
                      |.|.    ..+..|.|.
T Consensus        81 a~n~----~~s~~l~V~   93 (94)
T d1pd6a_          81 VGGE----KCSTELFVK   93 (94)
T ss_dssp             ETTE----EECCEEEEE
T ss_pred             EeeE----EEEEEEEEE
Confidence            9774    344455553

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4.3e-09  Score=72.57  Aligned_cols=70  Identities=16%  Similarity=0.249  Sum_probs=54.5

Q ss_pred             ccCCCCeEEEEeeee---ccCCCCCCeeEEEcCCCccCC--cccEEEecceEEEccccceeceEEEEEEeccccee
Q psy535          163 QRKVGESVDMHCEAQ---EAEGTQKPTITWQRRDGVALP--KNRVKIVGGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~---~~~~~p~~~~~W~~~~~~~~~--~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      .+..|....|.|...   ...+.|.|.+.|+++ +..+.  ..+....++.|.|.++..+|+|.|+|.|.|..|..
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kd-g~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~   84 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKD-CKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGK   84 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCBTTTBCCCCEEEET-TEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             EEecCCCEEEEcCCccccccCCCCCCEEEEEEC-CccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCE
Confidence            567899999999421   126889999999994 44443  33455667899999999999999999999977643

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.3e-09  Score=75.52  Aligned_cols=89  Identities=13%  Similarity=0.191  Sum_probs=63.0

Q ss_pred             CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCC--eeEEEcCCCccCCcccEEE--ecceEEEccccceeceEEEEE
Q psy535          150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP--TITWQRRDGVALPKNRVKI--VGGNITIEGLRRVDFGYYECV  225 (460)
Q Consensus       150 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~--~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~  225 (460)
                      .|+.+.+.+... .+..|+.++|.|.+.  .+.|.+  .+.|++++. .+.......  ....|.|.....+|.|.|+|.
T Consensus         3 ~P~~v~i~p~~~-~v~~G~~~~L~C~v~--g~~P~p~~~v~W~~~~~-~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~   78 (103)
T d1iama1           3 TPERVELAPLPS-WQPVGKQLTLRCQVE--GGAPRAQLTVVLLRGEK-ELKREPAVGEPAEVTTTVLVRRDHHGAQFSCR   78 (103)
T ss_dssp             CCSEEEECCCCS-EECTTSEEEEEEEEE--CCBCGGGEEEEEEETTE-EEEEEECCTTTEEEEEEEECCSSCSSCEEEEE
T ss_pred             CCCceEEeCCCc-eEeCCCEEEEEEEec--CCCCCCceEEEEccccc-cccccccccccceEEEEEeeehhHCCCEEEEE
Confidence            466677776665 678899999999994  456655  578998543 332211110  134688899999999999999


Q ss_pred             EecccceeeeeeEEEEe
Q psy535          226 VSNEVATIVQAAQLVVE  242 (460)
Q Consensus       226 a~n~~g~~~~~~~l~v~  242 (460)
                      |.|..|+......+.+.
T Consensus        79 A~n~~g~~~~~~~~~~s   95 (103)
T d1iama1          79 TELDLRPQGLELFENTS   95 (103)
T ss_dssp             EEEECGGGTSCEEEEEC
T ss_pred             EEeCCCCccCeEeeeEc
Confidence            99999987666665554

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.3e-08  Score=69.19  Aligned_cols=88  Identities=24%  Similarity=0.391  Sum_probs=67.1

Q ss_pred             CCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCC
Q psy535          247 HAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL  325 (460)
Q Consensus       247 ~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~  325 (460)
                      .+|.++.. .....++.|+|.++.   .. ..+|.+.|+......+...... .....+.|.+|.+++.|.|++.|.|..
T Consensus         3 ~aP~n~~~~~~s~~si~l~W~~p~---~~-~~~Y~i~y~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~n~~   77 (92)
T d1qg3a1           3 GAPQNPNAKAAGSRKIHFNWLPPS---GK-PMGYRVKYWIQGDSESEAHLLD-SKVPSVELTNLYPYCDYEMKVCAYGAQ   77 (92)
T ss_dssp             CCCEEEEEEECSTTCEEEEEECCS---SC-CCEEEEEEEETTSCGGGCEEEE-ESSSEEEECSCCTTCEEEEEEEEECSS
T ss_pred             CcCCCCEEEEccCCEEEEEEEecC---CC-ccceEEeeeeccccccEEEEec-CCccEEEECCCCCCcEEEEEEEEEeCC
Confidence            35666654 356779999999863   22 3689999887665443333222 256789999999999999999999999


Q ss_pred             CCCCCCCcEEEEcc
Q psy535          326 GDGMLSNIVVVKTK  339 (460)
Q Consensus       326 G~~~~s~~~~~~~~  339 (460)
                      |.|.+|..+.++|.
T Consensus        78 G~g~~S~~~~~~T~   91 (92)
T d1qg3a1          78 GEGPYSSLVSCRTH   91 (92)
T ss_dssp             CBCCCCCCEEEECC
T ss_pred             cCcCCCCCEEEEcC
Confidence            99999999998875

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=1.3e-08  Score=73.94  Aligned_cols=88  Identities=17%  Similarity=0.203  Sum_probs=58.1

Q ss_pred             eeeecceeeEEEEEEEecCC--CCCeEEEeeCCeec-----------C----ccccccEEEee------cCeEEEeecCC
Q psy535           65 VQYLPFRLQGVVQCHIKANP--TFQYVTWTKDKRLL-----------E----PYQTKDIVVMQ------NGSLLFTRVNQ  121 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~--~~~~v~W~~~~~~~-----------~----~~~~~~~~~~~------~~~l~i~~~~~  121 (460)
                      ...+.+|++++|.|.+....  ....+.|++.+...           .    .....+.....      +.+|.|.+++.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            36677899999999985432  33469999854311           0    00112223222      23699999999


Q ss_pred             CCCeEEEEEEEcCCCCcceeeEEEEEeeCCCce
Q psy535          122 NHQGRYTCTPYNAHGTQGSSGQMEVLVRKPPAF  154 (460)
Q Consensus       122 ~d~G~y~C~~~~~~g~~~~~~~~~v~v~~~p~~  154 (460)
                      +|+|.|+|.+.+..+.  .+..+.|.|.+|+.+
T Consensus        91 ~D~G~Y~C~v~~~~~~--~~~~v~L~V~~P~~~  121 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSYQ--EEAAVELKVEDPFYW  121 (126)
T ss_dssp             GGCEEEEEEEEETTEE--EEEEEEEEEECTTTT
T ss_pred             hHCeEEEEEEEECCCE--EEEEEEEEEeCCCEE
Confidence            9999999999987655  456677888776543

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.8e-09  Score=72.32  Aligned_cols=90  Identities=17%  Similarity=0.085  Sum_probs=67.8

Q ss_pred             CCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEE
Q psy535          244 TQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK  322 (460)
Q Consensus       244 ~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~  322 (460)
                      .||.+|.++.+ .....++.|+|.++..++..  ..|.+.++..+...+............+.+.+|.+...|.|++.|.
T Consensus         2 ~PP~~P~n~~~~~~~~~si~~~W~p~~~~~~~--~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~   79 (95)
T d1bqua1           2 LPPEKPKNLSCIVNEGKKMRCEWDGGRETHLE--TNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAE   79 (95)
T ss_dssp             CCCCCCEEEEEEEETTSCCEEEEECCSCCSSC--CEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEE
T ss_pred             cCcCCCeeeEEEEccCCEEEEEEeCcccCCCc--eEEEEEEEEcccceeEeecccccceeeeeeeecCCCcEEEEEEEEE
Confidence            57889998875 45577899999998776554  5788888877655444444334455677888999999999999999


Q ss_pred             cCCCCCCCCCcEEE
Q psy535          323 NELGDGMLSNIVVV  336 (460)
Q Consensus       323 n~~G~~~~s~~~~~  336 (460)
                      |.+|.+. |..+.+
T Consensus        80 N~~G~s~-S~~v~~   92 (95)
T d1bqua1          80 NALGKVT-SDHINF   92 (95)
T ss_dssp             ETTEEEE-CCCEEE
T ss_pred             eCCcccc-CCCeec
Confidence            9999875 545544

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=3.2e-08  Score=68.81  Aligned_cols=92  Identities=21%  Similarity=0.245  Sum_probs=70.2

Q ss_pred             CCCCCCceee-----eeecceEEEEeecCCCC---CCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEE
Q psy535          245 QPHAPYNITG-----VATEFSVTLEWLPGYSG---GPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE  316 (460)
Q Consensus       245 ~p~~p~~~~~-----~~~~~~~~l~w~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~  316 (460)
                      .|.+|.++..     ......+.|+|.++...   ....+..|.+.++..+...|......  ....+.|.+|.+++.|.
T Consensus         2 kP~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~~~~--~~~~~~i~~L~p~t~Y~   79 (103)
T d1f6fb2           2 EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFTG--HQTQFKVFDLYPGQKYL   79 (103)
T ss_dssp             CCCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEEEEE--TCSEEEECCCCTTCEEE
T ss_pred             CCCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeeeccc--ceeEEEeCCCCcceEEE
Confidence            3677777654     23455799999987542   22244799999999888888766543  56789999999999999


Q ss_pred             EEEEEEcCCCC-CCCCCcEEEEc
Q psy535          317 FQVVGKNELGD-GMLSNIVVVKT  338 (460)
Q Consensus       317 ~~~~a~n~~G~-~~~s~~~~~~~  338 (460)
                      |+++|.|..|. |.+|..+.+.+
T Consensus        80 ~rVra~~~~G~wS~wS~~~~~~~  102 (103)
T d1f6fb2          80 VQTRCKPDHGYWSRWSQESSVEM  102 (103)
T ss_dssp             EEEEEEESSSCCCCCCCCEEEEC
T ss_pred             EEEEEEeCCCCCCCCcCceeeEC
Confidence            99999999994 88998887764

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.5e-08  Score=72.35  Aligned_cols=97  Identities=20%  Similarity=0.270  Sum_probs=69.0

Q ss_pred             eEEEEecCCCC-CCCceeeeeecceEEEEeecCCC-CCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCcc
Q psy535          237 AQLVVEGTQPH-APYNITGVATEFSVTLEWLPGYS-GGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATT  314 (460)
Q Consensus       237 ~~l~v~~~~p~-~p~~~~~~~~~~~~~l~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  314 (460)
                      +.+.....+|. +|..+........+.|.|.++.. .....+.+|.++|+..+...+....    ....+.+.+|.+.+.
T Consensus         9 v~v~T~~~~P~~pp~~~~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~~~~----~~~~~~~~~L~p~t~   84 (117)
T d1wj3a_           9 VNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLN----TNKTSAELVLPIKED   84 (117)
T ss_dssp             CCCCCSCCCCCCCCCSCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEEE----ESSSEEEEECCCSSC
T ss_pred             EEEEcCCCCcCCCCcceEEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCceeeee----ceeeEEEeeccCCcE
Confidence            33333333443 55666566778899999996422 2223457999999887766554433    234567778999999


Q ss_pred             EEEEEEEEcCCCCCCCCCcEEEE
Q psy535          315 YEFQVVGKNELGDGMLSNIVVVK  337 (460)
Q Consensus       315 ~~~~~~a~n~~G~~~~s~~~~~~  337 (460)
                      |.|+|.|.|..|.|..|..+.+.
T Consensus        85 Y~~~V~A~n~~G~G~~S~~v~v~  107 (117)
T d1wj3a_          85 YIIEVKATTDGGDGTSSEQIRIP  107 (117)
T ss_dssp             EEEEEEEEESSCCCCBCCCEEEC
T ss_pred             EEEEEEEEcCCccCCCCCCEEEe
Confidence            99999999999999999888774

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.9e-08  Score=70.14  Aligned_cols=86  Identities=21%  Similarity=0.271  Sum_probs=67.2

Q ss_pred             CCCCCceeeee---ecceEEEEeecCCC-CCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEE
Q psy535          246 PHAPYNITGVA---TEFSVTLEWLPGYS-GGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVG  321 (460)
Q Consensus       246 p~~p~~~~~~~---~~~~~~l~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a  321 (460)
                      |.+|.++....   ....+.|+|.++.. .....+..|.+.|+......|....... ....+.|.+|.+++.|.|+|+|
T Consensus         2 P~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~-~~~~~~i~~L~p~t~Y~~rVra   80 (104)
T d1n26a3           2 PDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKD-LQHHCVIHDAWSGLRHVVQLRA   80 (104)
T ss_dssp             CCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEECGG-GCSEEEESSCCTTCCEEEEEEE
T ss_pred             CcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCceeeecccc-ceEEEEECCCCCCCEEEEEEEE
Confidence            67777776543   34579999998753 2344457899999988888887776543 5578999999999999999999


Q ss_pred             EcCCCCCCCCC
Q psy535          322 KNELGDGMLSN  332 (460)
Q Consensus       322 ~n~~G~~~~s~  332 (460)
                      .|..|.|.+|.
T Consensus        81 ~n~~g~g~wSe   91 (104)
T d1n26a3          81 QEEFGQGEWSE   91 (104)
T ss_dssp             EETTTBSCCCC
T ss_pred             EeCCCccCCcC
Confidence            99999876665

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=7.4e-09  Score=72.59  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=66.8

Q ss_pred             CCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN  323 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n  323 (460)
                      .|.+|.++.. .....++.|.|.++...++. +.+|.+.|+..+................+.|.+|.+++.|.|++.|.|
T Consensus        10 vP~~p~~l~~~~~~~~sv~l~W~~P~~~ng~-i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   88 (106)
T d1wfna1          10 VPGPVGHLSFSEILDTSLKVSWQEPGEKNGI-LTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMT   88 (106)
T ss_dssp             SCCCCSCCEEESCCSSEEEEECCCCTTCCSC-CCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEEEEEEEEC
T ss_pred             CCcCCCCcEEEEecCCEEEEEEECCCCCCCc-EEeEEEEEEECCCCcceEEEecCCCeeEEEEccCCCCCEEEEEEEEEC
Confidence            4667777664 45677999999987766665 479999988766543322222333567899999999999999999999


Q ss_pred             CCCCCCCCCcEE
Q psy535          324 ELGDGMLSNIVV  335 (460)
Q Consensus       324 ~~G~~~~s~~~~  335 (460)
                      ..|.|..|....
T Consensus        89 ~~G~g~~s~~~~  100 (106)
T d1wfna1          89 SKGQGQVSASTI  100 (106)
T ss_dssp             SSCEEEEEEEEE
T ss_pred             CCCCcCCcCCEE
Confidence            999887765543

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.9e-08  Score=69.30  Aligned_cols=92  Identities=17%  Similarity=0.314  Sum_probs=69.1

Q ss_pred             CCCCCceeee-------eecceEEEEeecCCCCC---CCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccE
Q psy535          246 PHAPYNITGV-------ATEFSVTLEWLPGYSGG---PDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTY  315 (460)
Q Consensus       246 p~~p~~~~~~-------~~~~~~~l~w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~  315 (460)
                      |.||.++...       ....++.|+|.++....   ......|.+.|+..+...|......  ....+.|.+|.+++.|
T Consensus         1 PdPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~~~~~--~~~~~~i~~L~~~t~Y   78 (106)
T d1axib2           1 PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPI--LTTSVPVYSLKVDKEY   78 (106)
T ss_dssp             CCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECCCB--SSSEEEEEEEETTSCE
T ss_pred             CcCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccceeeeec--ccceEEECCCCCCCEE
Confidence            4566665432       22447999999875432   2245789999999888888776533  5678999999999999


Q ss_pred             EEEEEEEcCCC--CCCCCCcEEEEcc
Q psy535          316 EFQVVGKNELG--DGMLSNIVVVKTK  339 (460)
Q Consensus       316 ~~~~~a~n~~G--~~~~s~~~~~~~~  339 (460)
                      .|+++|.+..|  +|.+|..+.+++.
T Consensus        79 ~frVRa~~~~~g~ws~wS~~v~v~~P  104 (106)
T d1axib2          79 EVRVRSKQRNSGNYGEFSEVLYVTLP  104 (106)
T ss_dssp             EEEEEEEETTSSCCCCCCCCEEECCC
T ss_pred             EEEEEEEECCCCCCCCCCCCEEEECC
Confidence            99999998665  5889988888754

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.83  E-value=2.9e-09  Score=70.96  Aligned_cols=70  Identities=17%  Similarity=0.343  Sum_probs=52.2

Q ss_pred             ceeeCCCcccccCCCCeEEEEeeeeccCCCCCC-eeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEecccc
Q psy535          153 AFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKP-TITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSNEVA  231 (460)
Q Consensus       153 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  231 (460)
                      .+.+.|... .+..|+.++|.|.+   .+.+.+ .+.|++ ++..+..     .+..|.|..+...|+|.|+|.+.|..+
T Consensus         6 ~i~~~P~~~-~v~~G~~v~L~C~~---~~~~~~~~~~w~~-~g~~~~~-----~~~~l~i~~v~~~dsG~Y~C~a~ns~~   75 (85)
T d2fcba1           6 VLKLEPQWI-NVLQEDSVTLTCRG---THSPESDSIQWFH-NGNLIPT-----HTQPSYRFKANNNDSGEYTCQTGQTSL   75 (85)
T ss_dssp             EEEEESCCS-EEETTCEEEEEEEC---SSCCCTTCCEEEE-TTEECTT-----CCSSEEEEECCGGGCEEEEEECTTSBC
T ss_pred             EEEECCCCe-EEcCCCeEEEEEEE---eeccceeEEEeec-ccccccc-----cccceEEeeccccCCcEEEEECCCCcc
Confidence            345555544 67899999999998   566655 677777 4444432     345799999999999999999988655


Q ss_pred             e
Q psy535          232 T  232 (460)
Q Consensus       232 ~  232 (460)
                      +
T Consensus        76 S   76 (85)
T d2fcba1          76 S   76 (85)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.3e-08  Score=70.01  Aligned_cols=88  Identities=24%  Similarity=0.370  Sum_probs=69.4

Q ss_pred             eecceEEEEeecCCCCCCCceeeEEEEEEecCC----CCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCC
Q psy535          256 ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN----KDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS  331 (460)
Q Consensus       256 ~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s  331 (460)
                      ....++.|+|.++...  .++.+|.++|+....    ..|............+.|.+|.+++.|.|++.|.|..|.|..|
T Consensus        27 ~s~tsi~v~W~~p~~~--~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~~S  104 (120)
T d1ujta_          27 LTPTTVQVTWTVDRQP--QFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDS  104 (120)
T ss_dssp             CBTTEEEEEEEESSCC--SSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCCCC
T ss_pred             eCCCeEEEEecCCCCC--CcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcCcCCC
Confidence            3567999999977543  345799999986543    3566665555567789999999999999999999999999999


Q ss_pred             CcEEEEccCCCCCCC
Q psy535          332 NIVVVKTKGPKPGPP  346 (460)
Q Consensus       332 ~~~~~~~~~~~P~~p  346 (460)
                      ..+.+++.+. +.||
T Consensus       105 ~~~~~~T~e~-~~Pp  118 (120)
T d1ujta_         105 ESKTVRTTEE-SGPS  118 (120)
T ss_dssp             CCEEEEECSS-CCCC
T ss_pred             CCEEEEeCCC-CcCc
Confidence            9999988765 4444

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=5.4e-08  Score=67.85  Aligned_cols=92  Identities=20%  Similarity=0.234  Sum_probs=66.7

Q ss_pred             CCCCCCceeee-----eecceEEEEeecCCCC---CCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEE
Q psy535          245 QPHAPYNITGV-----ATEFSVTLEWLPGYSG---GPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYE  316 (460)
Q Consensus       245 ~p~~p~~~~~~-----~~~~~~~l~w~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~  316 (460)
                      .|.+|.++...     .....+.|+|.++...   .......|.+.++..+...|......  ....+.|.+|.+++.|.
T Consensus         2 kP~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~--~~~~~~i~~L~p~t~Y~   79 (104)
T d3d48r2           2 QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAG--QQTEFKILSLHPGQKYL   79 (104)
T ss_dssp             CCCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEEEEEE--TCSEEEECC--CCCEEE
T ss_pred             CCcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceeeeccc--cccEEEECCCCCCCEEE
Confidence            46777776642     2456799999987542   22334688888888777666655433  56789999999999999


Q ss_pred             EEEEEEcCCCC-CCCCCcEEEEc
Q psy535          317 FQVVGKNELGD-GMLSNIVVVKT  338 (460)
Q Consensus       317 ~~~~a~n~~G~-~~~s~~~~~~~  338 (460)
                      |+++|.|..|. |.+|..+.+.+
T Consensus        80 ~rVrA~n~~G~ws~wS~~~~v~t  102 (104)
T d3d48r2          80 VQVRCKPDHGYWSAWSPATFIQI  102 (104)
T ss_dssp             EEEEEEESSSCCCCCCCCEEEEC
T ss_pred             EEEEEEeCCCCCCCCcCCEEEEC
Confidence            99999999996 99999998875

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=3.1e-08  Score=68.62  Aligned_cols=96  Identities=22%  Similarity=0.347  Sum_probs=70.6

Q ss_pred             CCCCCCceee-eeecceEEEEeecC-CCCCCCceeeEEEEEEecCCCCeeeee--ccCCCCceEEEccCccCccEEEEEE
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPG-YSGGPDLKQNYVIWYREQGNKDWLPIP--VTPPGSTQITINRLTPATTYEFQVV  320 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~~~~~~~  320 (460)
                      |+.+|.++.. .....++.|+|.++ .......+.+|.+.|+......+....  ........+.|.+|.++..|.|++.
T Consensus         1 P~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~   80 (101)
T d1x4ya1           1 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQ   80 (101)
T ss_dssp             CCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEE
T ss_pred             CCCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEE
Confidence            4567777764 56677999999853 333334457999999876543322111  1222556899999999999999999


Q ss_pred             EEcCCCCCCCCCcEEEEccC
Q psy535          321 GKNELGDGMLSNIVVVKTKG  340 (460)
Q Consensus       321 a~n~~G~~~~s~~~~~~~~~  340 (460)
                      |.|..|.|.+|..+.++|+.
T Consensus        81 a~n~~G~s~~S~~~~~~T~~  100 (101)
T d1x4ya1          81 CFNEGGESEFSNVMICETKA  100 (101)
T ss_dssp             EECTTCCCCCCCCEEEECCC
T ss_pred             EEcCCCCCCCCCcEEEEccC
Confidence            99999999999999998763

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.2e-08  Score=72.35  Aligned_cols=88  Identities=24%  Similarity=0.321  Sum_probs=65.4

Q ss_pred             CCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCe---ee--eeccCCCCceEEEccCccCccEEEE
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDW---LP--IPVTPPGSTQITINRLTPATTYEFQ  318 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~i~~l~~~~~~~~~  318 (460)
                      .|.+|.++.. .....++.|+|.++.+++.++ ..|.+.++......+   ..  ..........+.|.+|.+++.|.|+
T Consensus        10 ~P~~P~~~~~~~~~~~sv~l~W~pp~~~~~~i-~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~fr   88 (111)
T d1wisa1          10 LPGPPTNLGISNIGPRSVTLQFRPGYDGKTSI-SRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFR   88 (111)
T ss_dssp             CCCCCEEEEEESCCSSCEEEEEECCCCCSSCC-SEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEECCC
T ss_pred             CCcCCCCCEEEEcCCCEEEEEEeCCCCCCCce-eEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCCEEEEE
Confidence            4567777664 356789999999887766654 789998876554322   22  1223335678999999999999999


Q ss_pred             EEEEcCCCCCCCCCc
Q psy535          319 VVGKNELGDGMLSNI  333 (460)
Q Consensus       319 ~~a~n~~G~~~~s~~  333 (460)
                      |.|.|..|.|.+|..
T Consensus        89 V~A~N~~G~s~~S~~  103 (111)
T d1wisa1          89 MRQVNIVGTSPPSQP  103 (111)
T ss_dssp             CEEECSSCBCCCCCC
T ss_pred             EEEEcCCcCCCCcCC
Confidence            999999999987765

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=5.9e-09  Score=70.72  Aligned_cols=90  Identities=13%  Similarity=0.139  Sum_probs=61.0

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      |.+...|.. .+..|++|+|.|.....  ...+.|+|+|..................|.|.++...|+|.|+|...+...
T Consensus         5 PsLsa~P~~-~V~~G~~VTL~C~~~~~--~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1           5 PFIWAEPHF-MVPKEKQVTICCQGNYG--AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCTT--CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEeeCCC-cccCCCcEEEEEecCCC--ccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence            556666754 46789999999987543  347999998864321000000001113599999999999999999888766


Q ss_pred             CcceeeEEEEEee
Q psy535          137 TQGSSGQMEVLVR  149 (460)
Q Consensus       137 ~~~~~~~~~v~v~  149 (460)
                      ....+..++|.|.
T Consensus        82 ~S~~Sd~leL~VT   94 (95)
T d1olla1          82 WSEPSNLLDLVVT   94 (95)
T ss_dssp             ECCCCCCEEEEEE
T ss_pred             ccCCCCCEEEEEe
Confidence            6667778887764

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.8e-08  Score=70.42  Aligned_cols=84  Identities=19%  Similarity=0.265  Sum_probs=66.6

Q ss_pred             CCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcC
Q psy535          245 QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE  324 (460)
Q Consensus       245 ~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~  324 (460)
                      .|.+|.++.......++.|.|.++...+.. +.+|.+.|+..+...+.. . .......+.+.+|.+++.|.|++.|.|.
T Consensus        20 vP~~P~~~~~~~~~~si~v~W~~p~~~~g~-i~~Y~i~~~~~~~~~~~~-~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   96 (113)
T d1x5ia1          20 VPEVPSSLHVRPLVTSIVVSWTPPENQNIV-VRGYAIGYGIGSPHAQTI-K-VDYKQRYYTIENLDPSSHYVITLKAFNN   96 (113)
T ss_dssp             CCCSCSEEEEEEETTEEEEEEECCSCTTBC-CCEEEEEECSSCGGGEEE-E-CCTTCCEEEECSCCSSCEECCEEEEECS
T ss_pred             CCCCCEeeeeeeCCCEEEEEEEccccCCcc-EEEEEEEeeeccccceee-e-eeCCccEEEEeccccCcEEEEEEEEECC
Confidence            577888887777778999999988776665 479999998766544433 2 2335678999999999999999999999


Q ss_pred             CCCCCCC
Q psy535          325 LGDGMLS  331 (460)
Q Consensus       325 ~G~~~~s  331 (460)
                      .|.|.+.
T Consensus        97 ~G~g~~~  103 (113)
T d1x5ia1          97 VGEGIPL  103 (113)
T ss_dssp             SCBCCCC
T ss_pred             CcCCCCe
Confidence            9988653

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.5e-08  Score=69.59  Aligned_cols=83  Identities=22%  Similarity=0.213  Sum_probs=62.1

Q ss_pred             eeecceEEEEeecCCCCCCCceeeEEEEEEecC-CCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCC---C
Q psy535          255 VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQG-NKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGM---L  330 (460)
Q Consensus       255 ~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~---~  330 (460)
                      .....++.|+|.++...+... ..|.+.|+... ...|............+.|.+|.+++.|.|+|+|.|..|.|.   +
T Consensus        17 ~~~~~~v~l~W~pp~~~~~~~-~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra~n~~g~G~~S~w   95 (105)
T d2d9qb2          17 PPQAGCLQLSWEPWQPGLHIN-QKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDW   95 (105)
T ss_dssp             --CCSCEEEEEECCGGGTTSC-EEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCC
T ss_pred             cCCCCeEEEEEcCCCCCCcee-EEEEEEEEecCCccceeeeecccCCcceeEEecccCCeEEEEEEEEEeCCCCCCCcCC
Confidence            445678999999887666654 68999998654 445665554444567899999999999999999999999854   5


Q ss_pred             CCcEEEEc
Q psy535          331 SNIVVVKT  338 (460)
Q Consensus       331 s~~~~~~~  338 (460)
                      |..+.+++
T Consensus        96 S~~~~~~t  103 (105)
T d2d9qb2          96 SPSLELRT  103 (105)
T ss_dssp             CCCEEECC
T ss_pred             CCCEEEeC
Confidence            55566554

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.1e-08  Score=72.93  Aligned_cols=98  Identities=26%  Similarity=0.388  Sum_probs=72.2

Q ss_pred             CCCCCceee---eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeec--cCCCCceEEEccCccCccEEEEEE
Q psy535          246 PHAPYNITG---VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPV--TPPGSTQITINRLTPATTYEFQVV  320 (460)
Q Consensus       246 p~~p~~~~~---~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~~~~~~~  320 (460)
                      |.+|.++..   .....++.|+|.++...+... ..|.+.|+......|.....  .......+.|.+|.++..|.|++.
T Consensus         5 P~pP~~~~v~~~~~~~~si~v~W~~p~~~~~~~-~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~   83 (115)
T d1bqua2           5 PNPPHNLSVINSEELSSILKLTWTNPSIKSVII-LKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIR   83 (115)
T ss_dssp             CCCCEEEEEECC--CCSCEEEEEECCGGGGTSC-EEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEEE
T ss_pred             CCCCCCCEEEEeccCCCEEEEEEeeccccccce-eeeeeeeeeeeeeeeeccccccccccccEEeeCCCccCcEEEEEEE
Confidence            556666554   244578999999876665544 79999999877766654432  233567899999999999999999


Q ss_pred             EEcCCCCCCC---CCcEEEEccCCCCC
Q psy535          321 GKNELGDGML---SNIVVVKTKGPKPG  344 (460)
Q Consensus       321 a~n~~G~~~~---s~~~~~~~~~~~P~  344 (460)
                      |.|..|.|.+   |..+.+.+...+|.
T Consensus        84 a~~~~G~g~~S~~S~~~~~~T~~~~P~  110 (115)
T d1bqua2          84 CMKEDGKGYWSDWSEEASGITYEDRPS  110 (115)
T ss_dssp             EEETTSCSCCCCCCCCEEEEECCCHHH
T ss_pred             EEeCCCccCCcCCcCCEEEECCCCCCC
Confidence            9999998654   56777887766564

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.77  E-value=4.1e-08  Score=68.49  Aligned_cols=91  Identities=18%  Similarity=0.252  Sum_probs=67.6

Q ss_pred             CCCCCCceee-eeecceEEEEeecCC--CCCCCceeeEEEEEEecCC-CCeeeeeccCCCCceEEEccCccCccEEEEEE
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGY--SGGPDLKQNYVIWYREQGN-KDWLPIPVTPPGSTQITINRLTPATTYEFQVV  320 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~  320 (460)
                      |+.+|.++.. .....++.|+|.++.  ..++ ++.+|.+.|+..+. ..|............+.|.+|.+++.|.|++.
T Consensus         4 P~~~P~~v~~~~~~~~si~v~W~p~~~~~~ng-~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   82 (105)
T d1cfba2           4 PFKNPDNVVGQGTEPNNLVISWTPMPEIEHNA-PNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVV   82 (105)
T ss_dssp             CSCCCSCCEEECSSTTCEEEECCCCCGGGTCS-SSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEE
T ss_pred             CCCCCcCeEEEEccCCeEEEEEeCCChhhcCc-eEEEEEEEeeeeccccceeEEEecCCCccEEEECCCCCCCEEEEEEE
Confidence            4456777765 356679999998642  3333 34799999887653 45555555555677899999999999999999


Q ss_pred             EEcCCCCCCCCCcEEE
Q psy535          321 GKNELGDGMLSNIVVV  336 (460)
Q Consensus       321 a~n~~G~~~~s~~~~~  336 (460)
                      |.|..|.|..|....+
T Consensus        83 A~N~~G~gp~S~~~v~   98 (105)
T d1cfba2          83 AINDRGESNVAAEEVV   98 (105)
T ss_dssp             EEETTEECSSCCCCEE
T ss_pred             EEeCCcCCCCCCCcEe
Confidence            9999999988766443

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.76  E-value=4.3e-09  Score=73.98  Aligned_cols=78  Identities=22%  Similarity=0.328  Sum_probs=58.4

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-------ccEEE-ecceEEEccccceece---EEEEEEecccc
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-------NRVKI-VGGNITIEGLRRVDFG---YYECVVSNEVA  231 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-------~~~~~-~~~~l~i~~~~~~~~g---~y~C~a~n~~g  231 (460)
                      .+.+|+.+.|.|.+.  .|.|.|.+.|++++......       .+... .+++|.|.+++..|+|   .|.|.|.|..|
T Consensus        13 t~~EG~~~~L~C~v~--~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g   90 (111)
T d1biha2          13 TPIEGRPFQLDCVLP--NAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAV   90 (111)
T ss_dssp             CCBTTEEEEECCCCC--EEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTC
T ss_pred             cccCCCeEEEEEEcc--cCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCC
Confidence            467899999999863  68999999999965544322       12232 3568999999988776   79999999999


Q ss_pred             eeeeeeEEEEe
Q psy535          232 TIVQAAQLVVE  242 (460)
Q Consensus       232 ~~~~~~~l~v~  242 (460)
                      .......+.+.
T Consensus        91 ~~~~~~~~~~i  101 (111)
T d1biha2          91 DEEVVLVEYEI  101 (111)
T ss_dssp             SSCEEEEEEEE
T ss_pred             CceEEEEEEEe
Confidence            87666544443

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3.5e-08  Score=68.23  Aligned_cols=95  Identities=13%  Similarity=0.132  Sum_probs=69.1

Q ss_pred             CCCCCCceee-eeecceEEEEeecCCC---CCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEE
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGYS---GGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV  320 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~  320 (460)
                      |+.+|.++.+ .....++.|+|.++..   ........|.+.++..+...+.... .......+.|.+|.+++.|.|++.
T Consensus         1 P~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~   79 (100)
T d1x5ja1           1 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN-ANATTLSYLVTGLKPNTLYEFSVM   79 (100)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEE-CCBCSSEEEEESCCTTCEECCEEE
T ss_pred             CCCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeEe-cCCCccEEEECCCCCCCEEEEEEE
Confidence            3556777664 5678899999997532   2223335777877766554433322 223567899999999999999999


Q ss_pred             EEcCCCCCCCCCcEEEEccC
Q psy535          321 GKNELGDGMLSNIVVVKTKG  340 (460)
Q Consensus       321 a~n~~G~~~~s~~~~~~~~~  340 (460)
                      |.|..|.|.+|..+.++|.+
T Consensus        80 a~n~~g~s~~S~~~~~~T~e   99 (100)
T d1x5ja1          80 VTKGRRSSTWSMTAHGTTFE   99 (100)
T ss_dssp             EECSSCBCCCCCCCCEECCC
T ss_pred             EEeCCcCcCCCCeEEEEecc
Confidence            99999999999998888753

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.8e-08  Score=67.96  Aligned_cols=87  Identities=18%  Similarity=0.306  Sum_probs=66.6

Q ss_pred             CCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCC-----CeeeeeccCCCCceEEEccCccCccEEEE
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK-----DWLPIPVTPPGSTQITINRLTPATTYEFQ  318 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~~~~~~~~  318 (460)
                      .|.+|.++.. .....++.|+|.++...+.+. .+|.+.|+.....     .|............+.|.+|.++..|.|+
T Consensus         2 ~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g~i-~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   80 (103)
T d1qg3a2           2 VPSEPGRLAFNVVSSTVTQLSWAEPAETNGEI-TAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYT   80 (103)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCSCCSSCC-CEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEEEE
T ss_pred             cCccCCCcEEEEecCCEEEEEEEECccCCCCc-eEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEEEE
Confidence            3667877775 567789999999887776654 7999988765432     23444444446678999999999999999


Q ss_pred             EEEEcCCCCCCCCC
Q psy535          319 VVGKNELGDGMLSN  332 (460)
Q Consensus       319 ~~a~n~~G~~~~s~  332 (460)
                      +.|.|..|.|..+.
T Consensus        81 V~A~n~~G~g~~s~   94 (103)
T d1qg3a2          81 VKARNGAGWGPERE   94 (103)
T ss_dssp             EEEEETTEECCCEE
T ss_pred             EEEEcCCccCCCcc
Confidence            99999999887654

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.5e-08  Score=73.52  Aligned_cols=96  Identities=22%  Similarity=0.251  Sum_probs=70.7

Q ss_pred             eeeecceEEEEeecCCCCCC--------CceeeEEEEEEecCCC-CeeeeeccCCCCceEEEccCccCccEEEEEEEEcC
Q psy535          254 GVATEFSVTLEWLPGYSGGP--------DLKQNYVIWYREQGNK-DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE  324 (460)
Q Consensus       254 ~~~~~~~~~l~w~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~  324 (460)
                      ......++.|+|.++...+.        ..+..|.+.++..... .|..+.  ......+.|.+|.+++.|.|++.|.|.
T Consensus        27 ~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~--~~~~~~~~i~~L~P~t~Y~f~V~A~n~  104 (137)
T d1wk0a_          27 SDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVY--VGEETNITLNDLKPAMDYHAKVQAEYN  104 (137)
T ss_dssp             ESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEEE--EESCSEEEECSCCTTCEECEEEEEEET
T ss_pred             EEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEEEEE--ecCccEEEECCCCCCcEEEEEEEEEcC
Confidence            34567899999997654322        2335677877765543 333322  225678999999999999999999999


Q ss_pred             CCCCCCCCcEEEEccCCCCCCCcceEE
Q psy535          325 LGDGMLSNIVVVKTKGPKPGPPRNVSV  351 (460)
Q Consensus       325 ~G~~~~s~~~~~~~~~~~P~~p~~~~~  351 (460)
                      .|.+.+|..+.+++...+|.+|...++
T Consensus       105 ~G~g~~S~~~~~~T~~~~P~~p~~p~i  131 (137)
T d1wk0a_         105 SIKGTPSEAEIFTTLSCEPDIPNPPRI  131 (137)
T ss_dssp             TEECCCCCCCCEECCCSSSCCCSCSCC
T ss_pred             CcccCCCCCEEEECCCCCCCCCCCCEE
Confidence            999999999999998887876665544

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3.1e-08  Score=71.96  Aligned_cols=103  Identities=24%  Similarity=0.458  Sum_probs=73.8

Q ss_pred             CCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCC--CeeeeeccCCCCceEEEccCccCccEEEEEEE
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK--DWLPIPVTPPGSTQITINRLTPATTYEFQVVG  321 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a  321 (460)
                      .|.+|.++.+ ......+.|.|.++...+... ..|.+.++.....  .|..... ......+.+.+|.+++.|.|++.|
T Consensus        16 ~P~~P~~~~v~~~~~~sv~l~W~~p~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~frV~A   93 (127)
T d1ueya_          16 VPNPPFDLELTDQLDKSVQLSWTPGDDNNSPI-TKFIIEYEDAMHKPGLWHHQTE-VSGTQTTAQLNLSPYVNYSFRVMA   93 (127)
T ss_dssp             SCCCCEEEEEECCSSSCEEEEEECCCCCSSCE-EEEEEEEEBTTTCTTCEEEEEE-EESSCCEEEECCCTTCEECCEEEE
T ss_pred             cCcCCCCcEEEEecCCeEEEEEeCCcccccce-EeeeeeeccccccceeEEEEee-cCCceEEEECCCccCCEEEEEEEE
Confidence            4677877764 566779999999887666654 6888888766543  2333222 225667889999999999999999


Q ss_pred             EcCCCCCCCCCcE-EEEccCCCC-CCCcce
Q psy535          322 KNELGDGMLSNIV-VVKTKGPKP-GPPRNV  349 (460)
Q Consensus       322 ~n~~G~~~~s~~~-~~~~~~~~P-~~p~~~  349 (460)
                      .|..|.+.+|... .+++.+..| .+|.++
T Consensus        94 ~n~~G~s~~S~~s~~~~t~~~~P~~~P~~~  123 (127)
T d1ueya_          94 VNSIGKSLPSEASEQYLTKASEPDKNPTSG  123 (127)
T ss_dssp             EESSCBCCCCSCCCCEECCCSSCSSCSSCC
T ss_pred             EcCCcCcCCcCCcccEEcCCCCCCCCCCCC
Confidence            9999999887653 455665555 566554

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=4.5e-08  Score=68.95  Aligned_cols=96  Identities=21%  Similarity=0.213  Sum_probs=70.2

Q ss_pred             CCCCCCCceee-eeecceEEEEeecCCCCC-CCceeeEEEEEEecCCCCeee---ee-ccCCCCceEEEccCccCccEEE
Q psy535          244 TQPHAPYNITG-VATEFSVTLEWLPGYSGG-PDLKQNYVIWYREQGNKDWLP---IP-VTPPGSTQITINRLTPATTYEF  317 (460)
Q Consensus       244 ~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~i~~l~~~~~~~~  317 (460)
                      .|+.+|.++.. .....++.|.|.++.... ..++.+|.+.|+......+..   .. ........+.|.+|.+++.|.|
T Consensus         7 ~P~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~   86 (109)
T d1va9a1           7 APDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGV   86 (109)
T ss_dssp             CCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEEE
T ss_pred             CCCCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcceEEEE
Confidence            34567777764 566779999999764332 234578999988766433222   11 1122456899999999999999


Q ss_pred             EEEEEcCCCCCCCCCcEEEEcc
Q psy535          318 QVVGKNELGDGMLSNIVVVKTK  339 (460)
Q Consensus       318 ~~~a~n~~G~~~~s~~~~~~~~  339 (460)
                      ++.|.|..|.|.+|..+.++|.
T Consensus        87 ~V~a~n~~G~g~~S~~v~~~T~  108 (109)
T d1va9a1          87 VVQAFNRAGTGPSSSEINATTL  108 (109)
T ss_dssp             EEEEEETTEECCCCCCEECCCC
T ss_pred             EEEEEcCCcCCCCCCCEEEEcC
Confidence            9999999999999999888765

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.5e-08  Score=68.32  Aligned_cols=72  Identities=25%  Similarity=0.506  Sum_probs=52.7

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcc--cEEEe--c--ceEEEccccceeceEEEEEEecccceeeee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKN--RVKIV--G--GNITIEGLRRVDFGYYECVVSNEVATIVQA  236 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~--~--~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  236 (460)
                      .+..|+.+.|.|.+   . .|.+.+.|++++.......  ++...  +  ..|.|.++...|+|.|+|.|.|.    ..+
T Consensus        11 ~v~~G~~v~l~C~v---~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~   82 (90)
T d1x44a1          11 TAYCGERVELECEV---S-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG----QSS   82 (90)
T ss_dssp             EEETTEEEEEEEEC---S-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE----EEE
T ss_pred             EEeCCCcEEEEEEE---C-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc----eEE
Confidence            78899999999997   4 4778999999655444332  23332  2  26999999999999999999874    334


Q ss_pred             eEEEEe
Q psy535          237 AQLVVE  242 (460)
Q Consensus       237 ~~l~v~  242 (460)
                      ..|.|.
T Consensus        83 a~l~V~   88 (90)
T d1x44a1          83 AKLSVD   88 (90)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            455554

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=4e-08  Score=68.62  Aligned_cols=83  Identities=18%  Similarity=0.189  Sum_probs=62.4

Q ss_pred             eeeecceEEEEeecCCCCCCCceeeEEEEEEec-CCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCC-
Q psy535          254 GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQ-GNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS-  331 (460)
Q Consensus       254 ~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s-  331 (460)
                      ......++.|+|.++...+... ..|.+.|+.. +...|..+.........+.|.+|.+++.|.|+++|.|..|.|.+| 
T Consensus        17 ~~~~~~~i~v~W~pp~~~~~~~-~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~L~p~t~Y~frVra~~~~g~g~wS~   95 (106)
T d1cd9b2          17 VSHQPGCLWLSWKPWKPSEYME-QECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSP   95 (106)
T ss_dssp             ---CCSCEEEEEECCGGGTTSC-EEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCC
T ss_pred             ecCCCCEEEEEEcCcccCCccc-eEEEEEEeeccccccceeeecccCCceEEEEeccCCCeEEEEEEEEEeCCCCCCCcC
Confidence            3456678999999887666654 7899999864 456777766554467789999999999999999999999986554 


Q ss_pred             --CcEEEE
Q psy535          332 --NIVVVK  337 (460)
Q Consensus       332 --~~~~~~  337 (460)
                        ..+.++
T Consensus        96 wS~~~~~~  103 (106)
T d1cd9b2          96 WSPGLQLR  103 (106)
T ss_dssp             CCCCEEEC
T ss_pred             CCCCeEec
Confidence              445543

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.70  E-value=1.8e-08  Score=70.59  Aligned_cols=86  Identities=24%  Similarity=0.383  Sum_probs=57.9

Q ss_pred             CCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCC-CCeeeeec-----------cCCCCceEEEccCccC
Q psy535          245 QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGN-KDWLPIPV-----------TPPGSTQITINRLTPA  312 (460)
Q Consensus       245 ~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~i~~l~~~  312 (460)
                      ||..|.  .......+++|+|.++.+++.+ +.+|.+.|+..+. ..|.....           .......++|.+|.++
T Consensus         2 PP~~p~--v~~~~~~sv~l~W~~P~~~g~~-I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~   78 (107)
T d2ic2a1           2 PPTPPN--VTRLSDESVMLRWMVPRNDGLP-IVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQ   78 (107)
T ss_dssp             CCCCCE--EEECC---EEEEEEEECCSSCC-EEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSS
T ss_pred             cCcCCE--EEEEECCEEEEEEEeCccccCC-ceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCC
Confidence            455553  2345678999999998776654 5899999886543 34433221           1112357999999999


Q ss_pred             ccEEEEEEEEcCCCCCCCCCc
Q psy535          313 TTYEFQVVGKNELGDGMLSNI  333 (460)
Q Consensus       313 ~~~~~~~~a~n~~G~~~~s~~  333 (460)
                      ..|.|+|.|.|..|.|.+|..
T Consensus        79 t~Y~frV~A~N~~G~s~~S~~   99 (107)
T d2ic2a1          79 HTYRFRILAVYSNNDNKESNT   99 (107)
T ss_dssp             EEEEEEEEEEETTSCEEECCC
T ss_pred             cEEEEEEEEEcCCCCCCCCCC
Confidence            999999999999998876643

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=1.1e-08  Score=73.84  Aligned_cols=94  Identities=18%  Similarity=0.165  Sum_probs=68.4

Q ss_pred             CCCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCee-------eeecc--------CCCCceEEEccC
Q psy535          245 QPHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWL-------PIPVT--------PPGSTQITINRL  309 (460)
Q Consensus       245 ~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--------~~~~~~~~i~~l  309 (460)
                      .|.+|.++.......++.|+|.++...+.. +.+|.++|+......+.       .....        ......+.|.+|
T Consensus         7 ~P~aP~~v~v~~~~~si~l~W~~P~~~~g~-i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L   85 (123)
T d1wfta_           7 GPGAPSTVRISKNVDGIHLSWEPPTSPSGN-ILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHIDY   85 (123)
T ss_dssp             CCCCCEEEEEEECSSEEEEEEECCSSCCSS-CCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCCCBC
T ss_pred             CCcCCcccEEEeCCCEEEEEecCchhcCCc-eEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEEcCC
Confidence            577888877666678999999988777775 58999998776542211       00000        001234567899


Q ss_pred             ccCccEEEEEEEEcCCCCCCCCCcEEEEcc
Q psy535          310 TPATTYEFQVVGKNELGDGMLSNIVVVKTK  339 (460)
Q Consensus       310 ~~~~~~~~~~~a~n~~G~~~~s~~~~~~~~  339 (460)
                      .++..|.|+|.|.|..|.|.+|....+++.
T Consensus        86 ~p~t~Y~frV~A~N~~G~Gp~S~~~~~~t~  115 (123)
T d1wfta_          86 TSRPAIVFRISAKNEKGYGPATQIRWLQGN  115 (123)
T ss_dssp             SSSCEEEEEEEEBSSSSBCCCEEEEEECCS
T ss_pred             CCCCEEEEEEEEecCCcCCCCCCcEEEEec
Confidence            999999999999999999988887777764

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.69  E-value=4.2e-09  Score=70.86  Aligned_cols=72  Identities=17%  Similarity=0.165  Sum_probs=55.0

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEec----ceEEEccccceeceEEEEEEecccceeeeeeE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVG----GNITIEGLRRVDFGYYECVVSNEVATIVQAAQ  238 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~----~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~~~  238 (460)
                      .+..|+.+.|.|.+   + .|.|.+.|++++..+....++.+..    ..|.|.++...|+|.|+|.|.|..+    +..
T Consensus        12 ~v~~G~~~~~~c~v---s-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~----sa~   83 (89)
T d1tiua_          12 EVFVGETAHFEIEL---S-EPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS----AAN   83 (89)
T ss_dssp             EEETTSCCCEEEBC---S-SSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC----CEE
T ss_pred             EEeCCCcEEEEEEE---C-CCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE----EEE
Confidence            78899999999997   3 5788999999766655555555432    2699999999999999999977543    344


Q ss_pred             EEEe
Q psy535          239 LVVE  242 (460)
Q Consensus       239 l~v~  242 (460)
                      |.|.
T Consensus        84 l~V~   87 (89)
T d1tiua_          84 LKVK   87 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.7e-07  Score=63.88  Aligned_cols=81  Identities=19%  Similarity=0.182  Sum_probs=63.1

Q ss_pred             CCCcee-eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCC
Q psy535          248 APYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG  326 (460)
Q Consensus       248 ~p~~~~-~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G  326 (460)
                      +|.++. ......++.|+|.++..  . .+.+|.++++..+...+............+.|.+|.++..|.|++.|.|..|
T Consensus         8 ~P~~l~v~~~t~~si~l~W~~p~~--~-~i~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~~~~g   84 (95)
T d2fnba_           8 QLTDLSFVDITDSSIGLRWTPLNS--S-TIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGG   84 (95)
T ss_dssp             CCTTCEEECCCSSCEEEECCCCCC--S-SCCEEEEEEEEETSCCEEEEEECCSSCSEEEECCCCTTSEEEEEEEEEETTE
T ss_pred             cCCCeEEEEEcCCEEEEEEEecCC--c-eEEeEEEEEEEeeccceEEEEEeCCCCeEEEEecccCCEEEEEEEEEEeCCc
Confidence            466665 45677899999997642  2 2479999998877666665555455678899999999999999999999999


Q ss_pred             CCCCC
Q psy535          327 DGMLS  331 (460)
Q Consensus       327 ~~~~s  331 (460)
                      .|.++
T Consensus        85 ~s~p~   89 (95)
T d2fnba_          85 ESAPT   89 (95)
T ss_dssp             ECCCC
T ss_pred             EeCCE
Confidence            87655

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=7.7e-08  Score=69.67  Aligned_cols=102  Identities=22%  Similarity=0.159  Sum_probs=71.1

Q ss_pred             CCCCCCCceee-eeecceEEEEeecCCCC-CCCceeeEEEEEEecCCCCe-------eeeeccCCCCceEEEccCccCcc
Q psy535          244 TQPHAPYNITG-VATEFSVTLEWLPGYSG-GPDLKQNYVIWYREQGNKDW-------LPIPVTPPGSTQITINRLTPATT  314 (460)
Q Consensus       244 ~~p~~p~~~~~-~~~~~~~~l~w~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~l~~~~~  314 (460)
                      .|+.+|.++.. ......+.|+|.++... ....+..|.+.++......+       ............+.|.+|.+++.
T Consensus        13 ~P~~~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   92 (125)
T d1uena_          13 LPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSH   92 (125)
T ss_dssp             CCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSCE
T ss_pred             CCCCCCcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECCCCCCCE
Confidence            46677887764 56788999999976432 22334566666654332211       11111222456899999999999


Q ss_pred             EEEEEEEEcCCCCCCCCCcEEEEccCCCCCC
Q psy535          315 YEFQVVGKNELGDGMLSNIVVVKTKGPKPGP  345 (460)
Q Consensus       315 ~~~~~~a~n~~G~~~~s~~~~~~~~~~~P~~  345 (460)
                      |.|+|.|.|..|.+.+|..+.++|.+..|.+
T Consensus        93 Y~~~V~A~n~~G~g~~S~~~~~~T~~~~pp~  123 (125)
T d1uena_          93 YTLNVRVVNGKGEGPASPDRVFNTPEGSGPS  123 (125)
T ss_dssp             EEEEEEEEESSCEEEECCCEEEECCCCCSSC
T ss_pred             EEEEEEEEeCCcccCCCCCEEEECCCCCcCC
Confidence            9999999999999999999999998765543

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=3.1e-07  Score=63.91  Aligned_cols=94  Identities=20%  Similarity=0.179  Sum_probs=67.6

Q ss_pred             CCCCCCceeeeee--cceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEE
Q psy535          245 QPHAPYNITGVAT--EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGK  322 (460)
Q Consensus       245 ~p~~p~~~~~~~~--~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~  322 (460)
                      .|.||.++.....  ...+.+.|.++..........|.+.|+..+...+............+.|.+|.+++.|.|+++|.
T Consensus         4 k~dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~rVRar   83 (105)
T d1erna2           4 LLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRAR   83 (105)
T ss_dssp             CCCCCEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCCEEEEEEECTTCCEEEECSCCSSCEEEEEEEEE
T ss_pred             ccCCCCCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCCCceEEEeecCCccEEEEeCCCCCcEEEEEEEEE
Confidence            4778888775433  34699999987666566667899999887665544433333456789999999999999999998


Q ss_pred             cCC----C-CCCCCCcEEEEc
Q psy535          323 NEL----G-DGMLSNIVVVKT  338 (460)
Q Consensus       323 n~~----G-~~~~s~~~~~~~  338 (460)
                      +..    | +|++|..+.+.+
T Consensus        84 ~~~~~~~G~WSeWS~~v~~~t  104 (105)
T d1erna2          84 MAEPSFGGFWSAWSEPVSLLT  104 (105)
T ss_dssp             ECSSSCCBCCCCCCCCEEEEC
T ss_pred             ECCCCCCCCCCCCCCCEEeeC
Confidence            542    2 467777787765

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.8e-07  Score=62.57  Aligned_cols=76  Identities=20%  Similarity=0.318  Sum_probs=60.3

Q ss_pred             CCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcC
Q psy535          246 PHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE  324 (460)
Q Consensus       246 p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~  324 (460)
                      |.+|.++.. ......+.|+|.++...   ....|.+.|+..+...|......  ....+.+.+|.+++.|.|+++|.+.
T Consensus         3 P~~P~nl~v~~~~~~~v~l~W~~p~~~---~~~~y~v~y~~~~~~~~~~~~~~--~~~~~~~~~L~p~t~Y~frVRa~~~   77 (95)
T d2b5ic1           3 PWAPENLTLHKLSESQLELNWNNRFLN---HCLEHLVQYRTDWDHSWTEQSVD--YRHKFSLPSVDGQKRYTFRVRSRFN   77 (95)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEECSSCS---TTCEEEEEEEETTCSSCEEEEEC--SSCEEEECSCCTTSCEEEEEEEECC
T ss_pred             CcCCCCCEEEEEeCCEEEEEECCCCCc---eeEEEEEEEEcCCCceeeEeeec--ccceeEcCCCCCCCEEEEEEEEeeC
Confidence            778888875 45677999999977532   23689999999888777766543  5678999999999999999999865


Q ss_pred             CC
Q psy535          325 LG  326 (460)
Q Consensus       325 ~G  326 (460)
                      .+
T Consensus        78 ~~   79 (95)
T d2b5ic1          78 PL   79 (95)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=98.65  E-value=2.7e-07  Score=61.67  Aligned_cols=84  Identities=31%  Similarity=0.397  Sum_probs=62.4

Q ss_pred             CCCCCCceeee-eecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535          245 QPHAPYNITGV-ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN  323 (460)
Q Consensus       245 ~p~~p~~~~~~-~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n  323 (460)
                      +|.+|.++... ....+++|+|.++.+++.  +..|.+.+..   ..  ...   .....+.+.+|.++..|.|++.|.|
T Consensus         3 AP~~P~~l~~~~~~~~sv~lsW~~p~~~~~--i~~Y~i~~~~---~~--~~~---~~~t~~~~~~L~p~t~Y~~~V~A~n   72 (88)
T d1k85a_           3 APTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDVYNGT---AL--ATT---VTGTTATISGLAADTSYTFTVKAKD   72 (88)
T ss_dssp             SCCCCEEEEEEEECSSCEEEEEECCSCCSS--EEEEEEEESS---SE--EEE---ESSSEEEECCCCSSCEEEEEEEEEE
T ss_pred             CcCCCCCcEEEEecCCEEEEEEeCCCCCCC--EEEEEEEccc---eE--EEe---cCCCEEEECCCCCCCEEEEEEEEEE
Confidence            47788888764 567899999998765433  4677775422   11  111   1457899999999999999999999


Q ss_pred             CCC-CCCCCCcEEEEc
Q psy535          324 ELG-DGMLSNIVVVKT  338 (460)
Q Consensus       324 ~~G-~~~~s~~~~~~~  338 (460)
                      ..| .+.+|..+.++|
T Consensus        73 ~~G~~s~~S~~v~vtT   88 (88)
T d1k85a_          73 AAGNVSAASNAVSVKT   88 (88)
T ss_dssp             TTTEECCCCCCEEEEC
T ss_pred             CCCCcCCCCcCEEEEC
Confidence            999 688888887764

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=3.1e-08  Score=67.97  Aligned_cols=90  Identities=14%  Similarity=0.140  Sum_probs=60.0

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccc-c-ccEEEeecCeEEEeecCCCCCeEEEEEEEc
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQ-T-KDIVVMQNGSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~-~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                      +|.+...|.. .+..|++|+|.|.....  ...+.|+|+|....... . ..........+.|.++...|+|.|+|...+
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~~~--~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~   83 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAIRE--AYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   83 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCCTT--CSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCCCC--CcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence            3556666754 57789999999986542  33799999764321100 0 000111224699999999999999999988


Q ss_pred             CCCCcceeeEEEEEe
Q psy535          134 AHGTQGSSGQMEVLV  148 (460)
Q Consensus       134 ~~g~~~~~~~~~v~v  148 (460)
                      .......+..++|.|
T Consensus        84 ~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          84 GHYRFRYSDTLELVV   98 (99)
T ss_dssp             TTTEEEECCCEEEEE
T ss_pred             CCcccCCCCCEEEEe
Confidence            776566677777766

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=9.7e-08  Score=66.13  Aligned_cols=97  Identities=20%  Similarity=0.237  Sum_probs=68.9

Q ss_pred             CCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcC
Q psy535          246 PHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE  324 (460)
Q Consensus       246 p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~  324 (460)
                      |.+|.++.. .....++.|+|.++.   . .+.+|.+.|+..+...+....  ......+.|.+|.+++.|.|++.|.|.
T Consensus         1 P~~P~~l~~~~~t~~si~l~W~~p~---~-~i~~Y~v~~~~~~~~~~~~~~--~~~~~~~~l~~L~p~t~Y~~~V~a~~~   74 (102)
T d2cuha1           1 PDGPTQLRALNLTEGFAVLHWKPPQ---N-PVDTYDIQVTAPGAPPLQAET--PGSAVDYPLHDLVLHTNYTATVRGLRG   74 (102)
T ss_dssp             CSSCEEEECCCCSSSCEEEEEECCS---S-CCSEEEEEEECSSSCCEEEEE--ETTCSEEEECSCCSSSEEEEEEEEEET
T ss_pred             CcCCCccEEEEeCCCEEEEEEEeee---c-cceeeEEEEEeccccceeeee--eeeeeeEEEccEEeeEEEEEEEEEEeC
Confidence            456776664 456789999999753   2 247899999876655444332  225678999999999999999999999


Q ss_pred             CCCCCCCCcEEEEccCCCCCCCcceEEE
Q psy535          325 LGDGMLSNIVVVKTKGPKPGPPRNVSVT  352 (460)
Q Consensus       325 ~G~~~~s~~~~~~~~~~~P~~p~~~~~~  352 (460)
                      .|.+..+ .+.+.+.   +.+|.++.+.
T Consensus        75 ~~~s~~~-~~~~~T~---~~~P~~l~~~   98 (102)
T d2cuha1          75 PNLTSPA-SITFTTG---LEAPRDLEAK   98 (102)
T ss_dssp             TEECCCE-EEEEESC---CCCTTTSSSC
T ss_pred             CCCcCCE-EEEEECC---CCCCCCCEee
Confidence            8877543 4455554   4566666543

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=7.1e-08  Score=67.52  Aligned_cols=92  Identities=17%  Similarity=0.187  Sum_probs=63.0

Q ss_pred             cCCCCCCCceeee--eecceEEEEeecCCCCCCCceeeEEEEEEecCCCC----ee--ee-eccCCCCceEEEccCccCc
Q psy535          243 GTQPHAPYNITGV--ATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD----WL--PI-PVTPPGSTQITINRLTPAT  313 (460)
Q Consensus       243 ~~~p~~p~~~~~~--~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~-~~~~~~~~~~~i~~l~~~~  313 (460)
                      +.||.+|.++.+.  .....++++|.|+.+++.+  ..|.+.+.......    +.  .. .........+.+.+|.+.+
T Consensus         2 G~PP~~P~~v~~i~~~~~~sv~~sW~p~~d~~~~--~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t   79 (107)
T d1cd9b1           2 GYPPASPSNLSCLMHLTTNSLVCQWEPGPETHLP--TSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQ   79 (107)
T ss_dssp             CCCCCCCEEEEEEEETTTTEEEEEEECCSCCSSC--CEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTS
T ss_pred             CCccCCCcCCEEEEecCCCEEEEEEcCCCCCCCC--cceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcCc
Confidence            4689999988743  3467999999998877765  35555554433211    11  11 1122345678899999999


Q ss_pred             cEEEEEEEEcCCCCCCCCCcEEEE
Q psy535          314 TYEFQVVGKNELGDGMLSNIVVVK  337 (460)
Q Consensus       314 ~~~~~~~a~n~~G~~~~s~~~~~~  337 (460)
                      .|.|++.|.|.+|.+. |..+.+.
T Consensus        80 ~Y~frV~A~N~~G~s~-S~~~~~~  102 (107)
T d1cd9b1          80 YMAIWVQAENMLGSSE-SPKLCLD  102 (107)
T ss_dssp             CEEEEEEEEETTEEEE-CCCEEEC
T ss_pred             eEEEEEEEEeCCcccc-CCCEEcc
Confidence            9999999999999874 5566553

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.8e-07  Score=66.33  Aligned_cols=95  Identities=15%  Similarity=0.176  Sum_probs=67.8

Q ss_pred             CCCCCCceeeeeecceEEEEeecCCCCCCC-----ceeeEEEEEEecCCCCeeeee-ccCCCCceEEEccCccCccEEEE
Q psy535          245 QPHAPYNITGVATEFSVTLEWLPGYSGGPD-----LKQNYVIWYREQGNKDWLPIP-VTPPGSTQITINRLTPATTYEFQ  318 (460)
Q Consensus       245 ~p~~p~~~~~~~~~~~~~l~w~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~~~~~~~~  318 (460)
                      .|.+|.++.+......+.|+|.++...+..     ....|.+.++..+...+.... ........+.+.+|.++..|.|+
T Consensus         5 kP~pP~nl~v~~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~r   84 (114)
T d2gysa2           5 QPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVAR   84 (114)
T ss_dssp             CCCCCEEEEEEEETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSSEEEECTTTCCTTCEEEEE
T ss_pred             cCCcCCCeEEEEeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeeccCceEEEEeCCCCCCcEEEEE
Confidence            578899988877788999999987554322     234688888887654332222 22234567888999999999999


Q ss_pred             EEEEcCCCC------CCCCCcEEEEcc
Q psy535          319 VVGKNELGD------GMLSNIVVVKTK  339 (460)
Q Consensus       319 ~~a~n~~G~------~~~s~~~~~~~~  339 (460)
                      ++|.|..|.      +++|..+.+.+.
T Consensus        85 VRa~~~~g~~~~g~wS~WS~~v~~~t~  111 (114)
T d2gysa2          85 VRTRLAPGSRLSGRPSKWSPEVCWDSQ  111 (114)
T ss_dssp             EEEEECTTSSCCBCCCCCCCCEEEECC
T ss_pred             EEEEeCCCCCCCCCccCCcCCEeeeCc
Confidence            999998874      567888888764

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.7e-08  Score=71.92  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=67.8

Q ss_pred             CCCCCCCceeee--eecceEEEEeecCCCCC-CCceeeEEEEEEecCC-CCeeeeeccCCCCceEEEccCccCccEEEEE
Q psy535          244 TQPHAPYNITGV--ATEFSVTLEWLPGYSGG-PDLKQNYVIWYREQGN-KDWLPIPVTPPGSTQITINRLTPATTYEFQV  319 (460)
Q Consensus       244 ~~p~~p~~~~~~--~~~~~~~l~w~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~  319 (460)
                      .+|.+|.++...  ....++.|+|.|+.... ......|++.|+.... ..+........+...+.|.+|.+++.|.|+|
T Consensus         9 ~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~v~V   88 (117)
T d2cspa1           9 GPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFPTADSTAVELVRLRSLEAKGVTV   88 (117)
T ss_dssp             CCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESSSSEEEEECCTTCSEEEEESHHHHHHTCSCBEE
T ss_pred             CCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEeecccceeeeeeccceeeeeccCCCCCcEEEEEE
Confidence            467788888753  44568999999864321 1111233443432222 2222222222345578899999999999999


Q ss_pred             EEEcCCCCCCCCCcEEEEccCCCCCCC
Q psy535          320 VGKNELGDGMLSNIVVVKTKGPKPGPP  346 (460)
Q Consensus       320 ~a~n~~G~~~~s~~~~~~~~~~~P~~p  346 (460)
                      +|.|..|.|..|..+.+.+...+|..|
T Consensus        89 ~A~n~~G~s~~S~~v~i~t~~~vP~~P  115 (117)
T d2cspa1          89 RTLSAQGESVDSAVAAVPPELLVPPTP  115 (117)
T ss_dssp             EEEESSCCCCCCSCBCCCHHHHSCCCC
T ss_pred             EEEcCCCcCCCCCCEEeeCCCCCCccc
Confidence            999999999999998888776566555

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.58  E-value=1.6e-07  Score=67.17  Aligned_cols=88  Identities=18%  Similarity=0.297  Sum_probs=54.7

Q ss_pred             EcceeeeecceeeEEEEEEEecCC---CCCeEEEeeCC--e----ec------------CccccccEEEee-----cCeE
Q psy535           61 FTPTVQYLPFRLQGVVQCHIKANP---TFQYVTWTKDK--R----LL------------EPYQTKDIVVMQ-----NGSL  114 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~~~~~~---~~~~v~W~~~~--~----~~------------~~~~~~~~~~~~-----~~~l  114 (460)
                      ..|....+..|++++|.|......   ....+.|++..  .    .+            .+....|.....     +.+|
T Consensus         4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   83 (119)
T d1neua_           4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI   83 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred             cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEE
Confidence            456667788899999999875321   22369998721  1    00            000112333322     2369


Q ss_pred             EEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEe
Q psy535          115 LFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLV  148 (460)
Q Consensus       115 ~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v  148 (460)
                      .|.+++.+|+|.|.|.+.+..+.......+.|.|
T Consensus        84 ~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          84 VIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             EECSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             EECCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            9999999999999999987655444555566665

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.5e-08  Score=70.64  Aligned_cols=76  Identities=13%  Similarity=0.109  Sum_probs=50.4

Q ss_pred             ccCCCCeEEEEeeeeccCCCC--CCeeEEEcCCCccCCccc-EEE------ecceEEEccccceeceEEEEEEeccccee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQ--KPTITWQRRDGVALPKNR-VKI------VGGNITIEGLRRVDFGYYECVVSNEVATI  233 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p--~~~~~W~~~~~~~~~~~~-~~~------~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  233 (460)
                      .+..|+.++|.|.+.  .+.|  .+.+.|++++. .+.... ...      ....|.+.....+|.|.|+|.|.|..+..
T Consensus        13 ~v~~G~~v~l~C~v~--g~~p~p~~~i~W~~~~~-~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~   89 (106)
T d1zxqa1          13 LVAVGKSFTIECRVP--TVEPLDSLTLFLFRGNE-TLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSR   89 (106)
T ss_dssp             EECTTSEEEEEEEEC--SCBCGGGEEEEEEETTE-EEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGG
T ss_pred             EEeCCCEEEEEEEEe--CcccCCCceEEEEcCCE-EeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCC
Confidence            567899999999994  4444  45899999443 332111 000      12246777777788889999999998865


Q ss_pred             eeeeEEEE
Q psy535          234 VQAAQLVV  241 (460)
Q Consensus       234 ~~~~~l~v  241 (460)
                      ...+.+.+
T Consensus        90 ~~~~~~~~   97 (106)
T d1zxqa1          90 GGNIFHKH   97 (106)
T ss_dssp             TCCEEEEE
T ss_pred             CCeeEecc
Confidence            55444444

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.7e-07  Score=63.04  Aligned_cols=76  Identities=20%  Similarity=0.385  Sum_probs=56.9

Q ss_pred             ecceEEEEeecCCCCCCCceeeEEEEEEecCCC-CeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCCCcEE
Q psy535          257 TEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNK-DWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVV  335 (460)
Q Consensus       257 ~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s~~~~  335 (460)
                      ...++.|+|.++.   ...+.+|.+.|+..+.. .|..+.+ ......+.|.+|.|+..|.+++.|.|..|.++.+ .+.
T Consensus        14 ~~~s~~vsW~~P~---~~~i~~Y~i~y~~~~~~~~~~~~~v-~~~~~~~~l~gL~P~t~Y~v~v~av~~~G~s~~~-~~~   88 (93)
T d1owwa_          14 QPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATI-PGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVT-RFD   88 (93)
T ss_dssp             CTTCEEEEEECCS---SSCEEEEEEEEEETTCSSCCEEEEE-CSSCCEEEECSCCSSEEEEEEEEEEESSSCEEEE-EEE
T ss_pred             CCCEEEEEeeccc---ccceeEEEEEEeeccccceeeeecc-CCCccEEEECCcccCcEEEEEEEEEeCCCccCcE-EEE
Confidence            3468999999864   22458999999976543 3444443 3366789999999999999999999999987655 344


Q ss_pred             EE
Q psy535          336 VK  337 (460)
Q Consensus       336 ~~  337 (460)
                      ++
T Consensus        89 ~t   90 (93)
T d1owwa_          89 FT   90 (93)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=6.5e-08  Score=69.98  Aligned_cols=83  Identities=16%  Similarity=0.210  Sum_probs=52.7

Q ss_pred             eeeeecceeeEEEEEEEecCCC---CCeEEEeeCCee----------------c---CccccccEEEeec------CeEE
Q psy535           64 TVQYLPFRLQGVVQCHIKANPT---FQYVTWTKDKRL----------------L---EPYQTKDIVVMQN------GSLL  115 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~~~~----------------~---~~~~~~~~~~~~~------~~l~  115 (460)
                      ....+.+|++++|.|.+...+.   ...+.|++....                .   .+....+.....+      .+|.
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~   91 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN   91 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence            3456778999999999865432   235899972111                0   0111223333221      3699


Q ss_pred             EeecCCCCCeEEEEEEEcCCCCcceeeEEEE
Q psy535          116 FTRVNQNHQGRYTCTPYNAHGTQGSSGQMEV  146 (460)
Q Consensus       116 i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v  146 (460)
                      |.+++.+|+|.|.|.+.+..+.......++|
T Consensus        92 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V  122 (124)
T d1eaja_          92 VTNLQLSDIGTYQCKVKKAPGVANKKIHLVV  122 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EcccEEccCEEEEEEEEECCCeEEeEEEEEE
Confidence            9999999999999999987765444333333

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3.3e-07  Score=61.60  Aligned_cols=82  Identities=16%  Similarity=0.157  Sum_probs=59.9

Q ss_pred             CCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcC
Q psy535          246 PHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNE  324 (460)
Q Consensus       246 p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~  324 (460)
                      +.+|.++.. .....++.|+|.++.   . ...+|.+.|+..+...+............+.|.+|.|++.|.|++.|.|.
T Consensus         2 ld~P~~l~v~~~s~~s~~l~W~~p~---~-~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   77 (90)
T d1tena_           2 LDAPSQIEVKDVTDTTALITWFKPL---A-EIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRG   77 (90)
T ss_dssp             CCCCEEEEEESCCSSCEEEEEECCS---S-CCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCCCcEEEEecCCEEEEEEEeCc---e-EeccEEEEEEEcCCCceeEEEEecCCcceeeEeeecCCCEEEEEEEEEeC
Confidence            346666664 456779999999763   2 23689999987665433332223336788999999999999999999999


Q ss_pred             CCCCCCC
Q psy535          325 LGDGMLS  331 (460)
Q Consensus       325 ~G~~~~s  331 (460)
                      .|.+.++
T Consensus        78 ~g~s~~~   84 (90)
T d1tena_          78 DMSSNPA   84 (90)
T ss_dssp             TEECCCE
T ss_pred             CCEeCCE
Confidence            9977543

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.4e-07  Score=65.00  Aligned_cols=80  Identities=16%  Similarity=0.144  Sum_probs=50.8

Q ss_pred             CCCCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCC
Q psy535          246 PHAPYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL  325 (460)
Q Consensus       246 p~~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~  325 (460)
                      +.|| ++.+.....++.|+|.++....+.....|.+.|+......+............+.|.+|.++..|.|+++|.+..
T Consensus         6 ~~Pp-~l~v~~~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rVRa~~~~   84 (100)
T d2gysa4           6 MAPP-SLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSR   84 (100)
T ss_dssp             CCCC-EEEEC---CCCEEEEEC--------CEEEEEEEECSSSCSTTSCEEEEESCSEEECCCCCSSCCCEEEEEEEECC
T ss_pred             CCCC-ccEEEECCCEEEEEEecCcccCCccceEEEEEEeecccceeceeecccCCceEEEeCCCCCCCeEEEEEEEEECC
Confidence            3444 566666677899999988776666667899999876543222222222256789999999999999999999877


Q ss_pred             C
Q psy535          326 G  326 (460)
Q Consensus       326 G  326 (460)
                      |
T Consensus        85 g   85 (100)
T d2gysa4          85 T   85 (100)
T ss_dssp             T
T ss_pred             C
Confidence            6

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=5.9e-07  Score=60.96  Aligned_cols=79  Identities=14%  Similarity=0.191  Sum_probs=59.7

Q ss_pred             CCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCC
Q psy535          248 APYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG  326 (460)
Q Consensus       248 ~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G  326 (460)
                      +|.++.. .....++.|+|.++..   . +.+|.+.|+......+............+.|.+|.+++.|.|++.|.|..|
T Consensus         4 ~P~~l~v~~vt~~sv~l~W~~p~~---~-~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   79 (94)
T d1j8ka_           4 RPKGLAFTDVDVDSIKIAWESPQG---Q-VSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDM   79 (94)
T ss_dssp             CCCCCEEEEEETTEEEEECCCCSS---C-CSCEEEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEECSSSC
T ss_pred             CCCCCEEEEecCCEEEEEEeCCCc---c-ccceEEEEEeecCCCceEEEecCCCccEEEECCCCCCCEEEEEEEEEeCCC
Confidence            4556654 5677899999997632   2 368899888776655544444444678899999999999999999999998


Q ss_pred             CCCC
Q psy535          327 DGML  330 (460)
Q Consensus       327 ~~~~  330 (460)
                      .+.+
T Consensus        80 ~S~p   83 (94)
T d1j8ka_          80 ESQP   83 (94)
T ss_dssp             CCCC
T ss_pred             CcCC
Confidence            7654

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3e-07  Score=61.72  Aligned_cols=78  Identities=28%  Similarity=0.432  Sum_probs=58.8

Q ss_pred             CCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCC
Q psy535          248 APYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG  326 (460)
Q Consensus       248 ~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G  326 (460)
                      +|.++.. .....++.|+|.++.   . .+.+|.+.|+..+...+............+.|.+|.|++.|.|++.|.|..|
T Consensus         3 aP~nl~v~~~~~~s~~l~W~~p~---~-~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n~~g   78 (89)
T d1fnha3           3 APSNLRFLATTPNSLLVSWQPPR---A-RITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQ   78 (89)
T ss_dssp             CCEEEEEEEEETTEEEEEEECCS---S-CCSEEEEEEECTTSCCEECTTCCCTTCCEEEEESCCTTCEEEEEEEEESSSC
T ss_pred             cCcCCEEEEecCCEEEEEEeCCC---c-CCceEEEEEeeccCCccEEEEEcCCCccEEEEEeeeCCCEEEEEEEEEcCCC
Confidence            4566654 456789999999763   2 2478999998876655554433344567899999999999999999999998


Q ss_pred             CCC
Q psy535          327 DGM  329 (460)
Q Consensus       327 ~~~  329 (460)
                      .+.
T Consensus        79 ~S~   81 (89)
T d1fnha3          79 KSE   81 (89)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            653

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.1e-07  Score=61.60  Aligned_cols=78  Identities=23%  Similarity=0.256  Sum_probs=58.4

Q ss_pred             CCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCC
Q psy535          248 APYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG  326 (460)
Q Consensus       248 ~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G  326 (460)
                      +|.++.. .....++.|+|.++.   . ...+|.+.|+......+............+.|.+|.+++.|.|++.|.|..|
T Consensus         3 ~P~~l~v~~vt~~sv~l~W~~p~---~-~~~~Y~i~~~~~~~~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   78 (89)
T d1fnfa3           3 SPTGIDFSDITANSFTVHWIAPR---A-TITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGRE   78 (89)
T ss_dssp             CCEEEEEESCCSSEEEEEEECCS---S-CCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETTE
T ss_pred             cCcCCEEEEecCCEEEEEEEeCC---C-EEeeEEEEEEECCCCCceEEEEECCCccEEEECCCcccCEEEEEEEEEcCCc
Confidence            5666653 456789999999763   2 2368999998776555443333334677899999999999999999999998


Q ss_pred             CCC
Q psy535          327 DGM  329 (460)
Q Consensus       327 ~~~  329 (460)
                      .+.
T Consensus        79 ~s~   81 (89)
T d1fnfa3          79 ESP   81 (89)
T ss_dssp             ECC
T ss_pred             CcC
Confidence            764

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.3e-07  Score=64.63  Aligned_cols=67  Identities=9%  Similarity=0.142  Sum_probs=44.3

Q ss_pred             eeecceeeEEEEEEEecCCCCCeEEEeeCCeec--C----------ccccccEEEe----e--cCeEEEeecCCCCCeEE
Q psy535           66 QYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLL--E----------PYQTKDIVVM----Q--NGSLLFTRVNQNHQGRY  127 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~--~----------~~~~~~~~~~----~--~~~l~i~~~~~~d~G~y  127 (460)
                      +...+|++|+|.|........ .+.|++.....  .          .....++...    .  +.+|.|.+++.+|+|.|
T Consensus         4 V~~~~G~svtL~C~~s~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCC-CEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCc-eEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence            445689999999998665443 69999843211  0          0011222211    1  12599999999999999


Q ss_pred             EEEEEc
Q psy535          128 TCTPYN  133 (460)
Q Consensus       128 ~C~~~~  133 (460)
                      .|.+.+
T Consensus        83 ~C~v~~   88 (97)
T d2nxyb1          83 ICEVED   88 (97)
T ss_dssp             EEEETT
T ss_pred             EEEEec
Confidence            999964

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=8.6e-08  Score=65.45  Aligned_cols=49  Identities=24%  Similarity=0.199  Sum_probs=41.0

Q ss_pred             CcccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCc-ceeeeEEEEe
Q psy535            6 GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEP-QAAQAYLNVE   54 (460)
Q Consensus         6 ~~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~   54 (460)
                      ...+.|+.+..+|+|.|.+++.+|+|.|+|.+.+..|.. ....+.|.|.
T Consensus        48 ~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          48 FLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             EESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred             ccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEE
Confidence            356678899999999999999999999999999988874 3556777775

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=8.1e-07  Score=60.02  Aligned_cols=83  Identities=17%  Similarity=0.204  Sum_probs=61.7

Q ss_pred             CCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEc
Q psy535          245 QPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKN  323 (460)
Q Consensus       245 ~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n  323 (460)
                      .+.+|.++.. .....++.|+|.++.   . ...+|.+.|+..+...+............+.+.+|.++..|.+++.|.|
T Consensus         3 v~~~P~~l~v~~v~~~si~v~W~~p~---~-~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~   78 (93)
T d1tdqa1           3 VIDGPTQILVRDVSDTVAFVEWTPPR---A-KVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVR   78 (93)
T ss_dssp             SSCCCEEEEEEEECSSCEEEEEECCS---S-CCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEE
T ss_pred             cCCcCCCCEEEEeCCCEEEEEEEccc---c-CCCceEEEEEeccCcceeeEEEeCCCceEEEEeCcccceEEEEEEEEEe
Confidence            3456776664 456679999999753   2 2368999988777654443333444677899999999999999999999


Q ss_pred             CCCCCCCC
Q psy535          324 ELGDGMLS  331 (460)
Q Consensus       324 ~~G~~~~s  331 (460)
                      ..|.+.++
T Consensus        79 ~~g~s~~~   86 (93)
T d1tdqa1          79 GTNESDAS   86 (93)
T ss_dssp             TTEECCCE
T ss_pred             CCCCcCCE
Confidence            99987654

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=1e-06  Score=63.53  Aligned_cols=81  Identities=20%  Similarity=0.359  Sum_probs=57.2

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC-----------------CcccEEEe-------cceEEEcccccee
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL-----------------PKNRVKIV-------GGNITIEGLRRVD  218 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~-----------------~~~~~~~~-------~~~l~i~~~~~~~  218 (460)
                      .+..|++++|.|.+..........+.|++.+....                 ...+....       +.+|.|.+++..|
T Consensus        13 ~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   92 (126)
T d1pkoa_          13 RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSD   92 (126)
T ss_dssp             EEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGG
T ss_pred             EEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchhH
Confidence            67789999999997422333445789987542210                 01122221       2379999999999


Q ss_pred             ceEEEEEEecccceeeeeeEEEEec
Q psy535          219 FGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       219 ~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      +|.|.|.+.+..+.....+.|.|.+
T Consensus        93 ~G~Y~C~v~~~~~~~~~~v~L~V~~  117 (126)
T d1pkoa_          93 EGGYTCFFRDHSYQEEAAVELKVED  117 (126)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CeEEEEEEEECCCEEEEEEEEEEeC
Confidence            9999999999888888888888875

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1e-06  Score=61.10  Aligned_cols=94  Identities=21%  Similarity=0.261  Sum_probs=65.9

Q ss_pred             CCCCCceee-eeecceEEEEeecCCCCC-CCceeeEEEEEEecCCC-CeeeeeccCCCCceEEEccCccCccEEEEEEEE
Q psy535          246 PHAPYNITG-VATEFSVTLEWLPGYSGG-PDLKQNYVIWYREQGNK-DWLPIPVTPPGSTQITINRLTPATTYEFQVVGK  322 (460)
Q Consensus       246 p~~p~~~~~-~~~~~~~~l~w~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~  322 (460)
                      +.+|.++.. .....++.|+|.++.... ......|.+.++..... .+............+.|.+|.+++.|.|+++|.
T Consensus         3 l~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra~   82 (104)
T d2b5ib2           3 LMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVK   82 (104)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEECSCCCEEEECSCCTTCEEEEEEEEE
T ss_pred             cCCCCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEecCCCcEEEEECCCCCCCEEEEEEEEE
Confidence            567788774 556679999999765443 23335777887765532 222222233356789999999999999999999


Q ss_pred             cCCCC----CCCCCcEEEEcc
Q psy535          323 NELGD----GMLSNIVVVKTK  339 (460)
Q Consensus       323 n~~G~----~~~s~~~~~~~~  339 (460)
                      |..|.    +.+|..+.++|.
T Consensus        83 ~~~g~~g~wS~wS~~v~~~T~  103 (104)
T d2b5ib2          83 PLQGEFTTWSPWSQPLAFRTK  103 (104)
T ss_dssp             ESCCSSCCCCCCCCCEEEECC
T ss_pred             ECCCCCCCCCCCcCCEEEECC
Confidence            98874    566777887764

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=6e-07  Score=60.33  Aligned_cols=86  Identities=21%  Similarity=0.238  Sum_probs=61.3

Q ss_pred             CCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCC
Q psy535          248 APYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG  326 (460)
Q Consensus       248 ~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G  326 (460)
                      +|.++.. .....++.|+|.++...    ...|.+.|+......+............+.|.+|.+++.|.|++.|.|..|
T Consensus         2 pP~~l~~~~v~~~si~l~W~~p~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g   77 (90)
T d1fnha1           2 APTDLKFTQVTPTSLSAQWTPPNVQ----LTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTL   77 (90)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCSSC----CSEEEEEEEESSSCSCCCEEEECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             CCCCEEEEEecCCEEEEEEEcccee----ccceEEEEEeeeCCCceEEEEeCCCCeEEEEecccCceEEEEEEEEEeCCC
Confidence            3455553 55678999999976322    257788887766544443333344677899999999999999999999999


Q ss_pred             CCCCCCcEEEEc
Q psy535          327 DGMLSNIVVVKT  338 (460)
Q Consensus       327 ~~~~s~~~~~~~  338 (460)
                      .|..+. ..+.|
T Consensus        78 ~s~~~~-~~~~T   88 (90)
T d1fnha1          78 TSRPAQ-GVVTT   88 (90)
T ss_dssp             ECCCEE-EEEEC
T ss_pred             CcCCEe-EEEEc
Confidence            887653 33443

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.2e-07  Score=63.35  Aligned_cols=88  Identities=22%  Similarity=0.230  Sum_probs=55.7

Q ss_pred             CCCCCceee-eeecceEEEEeecCCCCCCCc--eeeEEEEEEecCCCCeeeee-cc-CCCCceEEEccCccCccEEEEEE
Q psy535          246 PHAPYNITG-VATEFSVTLEWLPGYSGGPDL--KQNYVIWYREQGNKDWLPIP-VT-PPGSTQITINRLTPATTYEFQVV  320 (460)
Q Consensus       246 p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~i~~l~~~~~~~~~~~  320 (460)
                      |.+|.++.+ .....++.|+|.++...+...  ...|.+.|+..+...|.... .. ......+.|.+|.+++.|.|+++
T Consensus         2 P~~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVr   81 (101)
T d1iarb2           2 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVR   81 (101)
T ss_dssp             CCCCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEEEE
T ss_pred             cccCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEEEE
Confidence            677777765 455679999999775554332  24688888887765554332 22 22345788999999999999999


Q ss_pred             EEcCCCCCCCCCc
Q psy535          321 GKNELGDGMLSNI  333 (460)
Q Consensus       321 a~n~~G~~~~s~~  333 (460)
                      |.|..|.|.+|..
T Consensus        82 A~~~~g~g~wSew   94 (101)
T d1iarb2          82 AWAQAYNTTWSEW   94 (101)
T ss_dssp             EECGGGTCCCCCC
T ss_pred             EEcCCCCCCCcCC
Confidence            9999987766543

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3e-07  Score=64.18  Aligned_cols=85  Identities=15%  Similarity=0.144  Sum_probs=52.8

Q ss_pred             ecceeeEEEEEEEecCCCC--CeEEEeeCCeecCcccccc-----EEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc-
Q psy535           68 LPFRLQGVVQCHIKANPTF--QYVTWTKDKRLLEPYQTKD-----IVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG-  139 (460)
Q Consensus        68 ~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~-  139 (460)
                      +.+|+.++|.|.+.+..++  ..+.|++++..+.......     -.......|.+.....+|...|+|+|.+..+... 
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~~   92 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS   92 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTT
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCccc
Confidence            6789999999999875332  3689999998765321111     0011123466665555566689999998765432 


Q ss_pred             ----eeeEEEEEeeCCC
Q psy535          140 ----SSGQMEVLVRKPP  152 (460)
Q Consensus       140 ----~~~~~~v~v~~~p  152 (460)
                          ......|.|.++|
T Consensus        93 ~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          93 VPTVRQAVKELQVYISP  109 (109)
T ss_dssp             SCSEEEEEEECCEECCC
T ss_pred             cccccceeEEeEEEeCC
Confidence                2334456666654

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=7.7e-08  Score=65.31  Aligned_cols=68  Identities=26%  Similarity=0.345  Sum_probs=50.1

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC------------cccEEE--ecceEEEccccceeceEEEEEEec
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP------------KNRVKI--VGGNITIEGLRRVDFGYYECVVSN  228 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~------------~~~~~~--~~~~l~i~~~~~~~~g~y~C~a~n  228 (460)
                      .+..|++++|.|..    ..|.+.+.|++++.....            ..+...  .+++|.|.++..+|+|.|+|.+.|
T Consensus         6 ~~~~G~sVtl~c~~----~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           6 YGVVYGNVTFHVPS----NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEETTCCEEECCCC----SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             EEEECCCEEEEecC----CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            46789999999985    458889999995533220            112222  245799999999999999999998


Q ss_pred             ccceee
Q psy535          229 EVATIV  234 (460)
Q Consensus       229 ~~g~~~  234 (460)
                      ..+...
T Consensus        82 ~~~t~~   87 (93)
T d1ccza1          82 ITDTMK   87 (93)
T ss_dssp             CCSCEE
T ss_pred             CCcEEE
Confidence            876554

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=5.1e-07  Score=63.39  Aligned_cols=76  Identities=16%  Similarity=0.287  Sum_probs=51.9

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCe-e--c--------CccccccEEEeec-----CeEEEeecC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKR-L--L--------EPYQTKDIVVMQN-----GSLLFTRVN  120 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~-~--~--------~~~~~~~~~~~~~-----~~l~i~~~~  120 (460)
                      ++..|....+.+|++++|.|...+......+.||+  .+. +  +        .+....++....+     ..|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            45678888899999999999986543333689998  222 1  1        0112233333322     149999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy535          121 QNHQGRYTCTPYNA  134 (460)
Q Consensus       121 ~~d~G~y~C~~~~~  134 (460)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          82 RNDSGIYLCGAISL   95 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cCCCeEEEEEEEeC
Confidence            99999999988653

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.3e-08  Score=70.63  Aligned_cols=95  Identities=14%  Similarity=0.157  Sum_probs=69.2

Q ss_pred             CCCCCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeee--eccCCCCceEEEccCccCccEEEEEE
Q psy535          244 TQPHAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI--PVTPPGSTQITINRLTPATTYEFQVV  320 (460)
Q Consensus       244 ~~p~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~l~~~~~~~~~~~  320 (460)
                      .++..|..+.. .....++.|+|.++...++.+ .+|.+.|+......+...  .........+.+.+|.+.+ |.|++.
T Consensus         3 ~~~d~P~~v~~~~~~~~sv~l~W~pP~~~ng~i-~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t-Y~~rV~   80 (102)
T d2dtge1           3 KADDIVGPVTHEIFENNVVHLMWQEPKEPNGLI-VLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIR   80 (102)
T ss_dssp             CCCCCCCCCCCCSSSSSCCCCCCCCCCSCSSCE-EEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSSE-ECCCCC
T ss_pred             CCCCCCCCCEEEEECCCEEEEEEEeCCCCcceE-EEeeeEEEecCCCCceeeeeeecccceEEEEEeccceee-EEEEEE
Confidence            35666666654 345678999999887776654 799998887654332221  1222345568899999975 999999


Q ss_pred             EEcCCCCCCCCCcEEEEccC
Q psy535          321 GKNELGDGMLSNIVVVKTKG  340 (460)
Q Consensus       321 a~n~~G~~~~s~~~~~~~~~  340 (460)
                      |.|..|.|.+|..+.+.+.+
T Consensus        81 A~n~~G~g~~S~~v~f~~~e  100 (102)
T d2dtge1          81 ATSLAGNGSWTEPTYFYVTD  100 (102)
T ss_dssp             EEETTBCCCCCCCCEECCCC
T ss_pred             EEcCCccCCCCCCEEEEccC
Confidence            99999999999999887654

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=8.7e-07  Score=59.64  Aligned_cols=79  Identities=18%  Similarity=0.269  Sum_probs=58.6

Q ss_pred             CCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCC
Q psy535          248 APYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG  326 (460)
Q Consensus       248 ~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G  326 (460)
                      +|.++.. .....++.|+|.++..  . .+.+|.+.|+..+...+............+.|.+|.+++.|.|++.|.|..|
T Consensus         3 pP~~l~~~~~~~~sv~l~W~~p~~--~-~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   79 (91)
T d1fnfa2           3 PPTDLRFTNIGPDTMRVTWAPPPS--I-DLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQH   79 (91)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCTT--C-CCSEEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             cCCceEEEEeCCCEEEEEEEecCC--C-CcceeEEEEEECCCCccEEEEEeCCCceEEEEeceeCCCEEEEEEEEEcCCC
Confidence            4566654 4567899999997632  2 2368999998776554443333344677899999999999999999999988


Q ss_pred             CCC
Q psy535          327 DGM  329 (460)
Q Consensus       327 ~~~  329 (460)
                      .+.
T Consensus        80 ~S~   82 (91)
T d1fnfa2          80 EST   82 (91)
T ss_dssp             ECC
T ss_pred             CCC
Confidence            764

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.43  E-value=9.6e-07  Score=58.90  Aligned_cols=78  Identities=19%  Similarity=0.279  Sum_probs=60.3

Q ss_pred             CCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCC
Q psy535          248 APYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG  326 (460)
Q Consensus       248 ~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G  326 (460)
                      +|.++.. .....++.|+|.++.   . ...+|.+.|+......+...... .....+.|.+|.++..|.|++.|.|..|
T Consensus         3 ~P~~l~v~~v~~~s~~l~W~~~~---~-~~~~Y~i~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   77 (88)
T d1qr4a2           3 SPKGISFSDITENSATVSWTPPR---S-RVDSYRVSYVPITGGTPNVVTVD-GSKTRTKLVKLVPGVDYNVNIISVKGFE   77 (88)
T ss_dssp             CCSCEEEESCCSSCEEEEECCCS---S-CCSEEEEEEEETTCCCCEEEEEE-TTCCEEEECSCCSSCEEEEEEEEEETTE
T ss_pred             CCcceEEEEecCCEEEEEEEccc---E-eeceEEEEEEeccCCceEEEEec-CCccEEEECCCCCCCEEEEEEEEEeCCC
Confidence            4555553 567789999999763   2 24789999988777666555433 3667999999999999999999999999


Q ss_pred             CCCC
Q psy535          327 DGML  330 (460)
Q Consensus       327 ~~~~  330 (460)
                      .+.+
T Consensus        78 ~s~p   81 (88)
T d1qr4a2          78 ESEP   81 (88)
T ss_dssp             ECCC
T ss_pred             CcCC
Confidence            7654

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=4.7e-08  Score=67.93  Aligned_cols=47  Identities=19%  Similarity=0.349  Sum_probs=38.8

Q ss_pred             cccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcceeeeEEEE
Q psy535            7 SLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQAAQAYLNV   53 (460)
Q Consensus         7 ~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   53 (460)
                      .+.+|.++..+|+|.|.+++.+|+|.|+|.+.+..+......+.|.|
T Consensus        60 ~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          60 AYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             SCCSSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             cceeEEEEcccccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            45789999999999999999999999999998876544355566655

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.2e-06  Score=61.35  Aligned_cols=91  Identities=16%  Similarity=0.223  Sum_probs=65.7

Q ss_pred             CCCCCCceeeee---ecceEEEEeecCCCCC--CCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEE
Q psy535          245 QPHAPYNITGVA---TEFSVTLEWLPGYSGG--PDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQV  319 (460)
Q Consensus       245 ~p~~p~~~~~~~---~~~~~~l~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~  319 (460)
                      .|.+|.++....   ....+.|+|.++....  ......|.+.++..+...|..+...  ....+.|.+|.+++.|.|++
T Consensus         7 kP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~--~~~~~~i~~L~~~t~Y~~rV   84 (109)
T d1uc6a_           7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELS--NGTAHTITDAYAGKEYIIQV   84 (109)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEEES--SCSEEEETTCCSSSCEEEEE
T ss_pred             ECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEEeccC--CceeEEeCCCCCCCEEEEEE
Confidence            477887776532   4578999999875432  2233578888888777777665443  56789999999999999999


Q ss_pred             EEEcCCC--CCCCCCcEEEE
Q psy535          320 VGKNELG--DGMLSNIVVVK  337 (460)
Q Consensus       320 ~a~n~~G--~~~~s~~~~~~  337 (460)
                      +|.|..+  ++.+|..+.++
T Consensus        85 rA~~~~~g~wS~WS~~~~~t  104 (109)
T d1uc6a_          85 AAKDNEIGTWSDWSVAAHAT  104 (109)
T ss_dssp             ECCBSSSCCCCCCCEEEEEC
T ss_pred             EEEECCCCCcCCCCCCEEeE
Confidence            9988643  35666666654

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=6.1e-07  Score=63.05  Aligned_cols=76  Identities=12%  Similarity=0.239  Sum_probs=51.9

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC----------------ccccccEEEeecC---eEEE
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE----------------PYQTKDIVVMQNG---SLLF  116 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~----------------~~~~~~~~~~~~~---~l~i  116 (460)
                      .+.+.|...++.+|++|+|.|.+........+.|+|-  +....                .....++......   .|.|
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I   81 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL   81 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence            3567888889999999999999866543336999982  11100                0011233332222   5999


Q ss_pred             eecCCCCCeEEEEEEEc
Q psy535          117 TRVNQNHQGRYTCTPYN  133 (460)
Q Consensus       117 ~~~~~~d~G~y~C~~~~  133 (460)
                      .+++.+|+|.|.|.+..
T Consensus        82 ~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          82 SDFRRENEGYYFCSALS   98 (114)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             ccCCCCCCEEEeEeEcC
Confidence            99999999999999864

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.1e-06  Score=58.85  Aligned_cols=78  Identities=18%  Similarity=0.230  Sum_probs=59.5

Q ss_pred             CCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCC
Q psy535          247 HAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL  325 (460)
Q Consensus       247 ~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~  325 (460)
                      .||.++.. .....++.|+|.++..    .+..|.++++..+...+..... ......+.|.+|.+++.|.|++.|.|..
T Consensus         3 spP~~l~v~~~~~~si~v~W~~p~~----~~~~Y~i~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   77 (90)
T d1fnha2           3 SPPRRARVTDATETTITISWRTKTE----TITGFQVDAVPANGQTPIQRTI-KPDVRSYTITGLQPGTDYKIYLYTLNDN   77 (90)
T ss_dssp             CCCEEEEEEEECSSEEEEEEECCSS----CCCCEEEEEEESSSSCCEEEEC-CTTCSEEEEESCCTTCEEEEEEEEEETT
T ss_pred             CcCCCCEEEEecCCEEEEEEECCCC----CCceeEEEEEEccCCceEEEec-CCCccEEEeCCCCCCcEEEEEEEEEeCC
Confidence            35666654 5677899999997632    2368999998876655554443 3367899999999999999999999999


Q ss_pred             CCCC
Q psy535          326 GDGM  329 (460)
Q Consensus       326 G~~~  329 (460)
                      |.+.
T Consensus        78 g~s~   81 (90)
T d1fnha2          78 ARSS   81 (90)
T ss_dssp             EECC
T ss_pred             CCcC
Confidence            9765

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.40  E-value=6.8e-07  Score=60.64  Aligned_cols=90  Identities=14%  Similarity=0.119  Sum_probs=55.7

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      +|.+...|. ..+..|++|+|.|.....  ...+.|+|+|..................+.|..+...|+|.|+|......
T Consensus         6 kPsLsa~P~-~~V~~G~~VTL~C~~~~~--~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~~   82 (99)
T d1nkra2           6 KPSLSAQPG-PTVLAGENVTLSCSSRSS--YDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHD   82 (99)
T ss_dssp             CCEEEEESC-SEECTTCEEEEEEEESSC--CSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEETT
T ss_pred             CCEEEEeCC-CcccCCCeEEEEECCCCC--ccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecCC
Confidence            456666775 456789999999986543  34799999886543211111111111246788888899999999765433


Q ss_pred             C---CcceeeEEEEEe
Q psy535          136 G---TQGSSGQMEVLV  148 (460)
Q Consensus       136 g---~~~~~~~~~v~v  148 (460)
                      .   ....+..+.|.|
T Consensus        83 ~p~~wS~~SdpLeL~V   98 (99)
T d1nkra2          83 SPYEWSKSSDPLLVSV   98 (99)
T ss_dssp             EEEEECCCCCCEEEEE
T ss_pred             CCCCccCCCCCEEEEE
Confidence            2   233455666654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.40  E-value=1.2e-06  Score=60.36  Aligned_cols=74  Identities=16%  Similarity=0.297  Sum_probs=50.2

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC---Ceec---------CccccccEEEeecC---eEEEeecCCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD---KRLL---------EPYQTKDIVVMQNG---SLLFTRVNQNH  123 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~---~~~~---------~~~~~~~~~~~~~~---~l~i~~~~~~d  123 (460)
                      ++..|....+.+|++|+|.|........ .+.||+-   ..+.         ......+.....++   .|.|.+++.+|
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~-~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~D   81 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKK-YIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPED   81 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCC-CeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccC
Confidence            4566788888999999999988655443 5999982   2111         01112233333222   59999999999


Q ss_pred             CeEEEEEEEc
Q psy535          124 QGRYTCTPYN  133 (460)
Q Consensus       124 ~G~y~C~~~~  133 (460)
                      +|.|.|.+..
T Consensus        82 sA~YyCa~~~   91 (106)
T d1a0ql1          82 IATYYCLQYY   91 (106)
T ss_dssp             CSEEEEEECS
T ss_pred             CEeEEEEEeC
Confidence            9999998753

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.40  E-value=7.8e-07  Score=61.30  Aligned_cols=74  Identities=11%  Similarity=0.127  Sum_probs=50.2

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeec----------CccccccEEEeec---CeEEEeecCCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLL----------EPYQTKDIVVMQN---GSLLFTRVNQNH  123 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~----------~~~~~~~~~~~~~---~~l~i~~~~~~d  123 (460)
                      ++..|....+.+|++++|.|........ .+.||+  .|...          ......++.....   ..|.|.+++.+|
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDD-DMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSED   82 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCc-cEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCcccc
Confidence            4466778888999999999987654433 599997  22211          1112233333222   259999999999


Q ss_pred             CeEEEEEEEc
Q psy535          124 QGRYTCTPYN  133 (460)
Q Consensus       124 ~G~y~C~~~~  133 (460)
                      +|.|.|.+.+
T Consensus        83 sa~YyCa~~~   92 (106)
T d1i8ka_          83 VGDYYCLQSF   92 (106)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEeEecCc
Confidence            9999998654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=9.2e-07  Score=62.88  Aligned_cols=76  Identities=13%  Similarity=0.240  Sum_probs=52.5

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC---------c-----------cccccEEEe-ec--
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE---------P-----------YQTKDIVVM-QN--  111 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~---------~-----------~~~~~~~~~-~~--  111 (460)
                      |.+...|....+.+|++++|.|.+.+.... .+.|++  .|..+.         .           ....++... .+  
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~-~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQ-GCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCCSS-CEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCccCC-CEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            567788999999999999999998776544 699997  222110         0           001122111 11  


Q ss_pred             -CeEEEeecCCCCCeEEEEEEEc
Q psy535          112 -GSLLFTRVNQNHQGRYTCTPYN  133 (460)
Q Consensus       112 -~~l~i~~~~~~d~G~y~C~~~~  133 (460)
                       ..|.|.+++.+|+|.|.|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence             1599999999999999998753

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.1e-06  Score=59.68  Aligned_cols=81  Identities=14%  Similarity=0.202  Sum_probs=53.8

Q ss_pred             ecCCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCeEEE---eecCCCCCeEEEE
Q psy535           54 EFPAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLF---TRVNQNHQGRYTC  129 (460)
Q Consensus        54 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C  129 (460)
                      ..+|.+.+.+.. ....|+.++|.|.+.|. |....|+|.+||..+............++++.+   ..+..+|.+.|+|
T Consensus         3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC   81 (100)
T d1k5nb_           3 QRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC   81 (100)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEE
T ss_pred             cCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEE
Confidence            345666554322 23567888999999996 555689999999988643333444445554332   2445667889999


Q ss_pred             EEEcCC
Q psy535          130 TPYNAH  135 (460)
Q Consensus       130 ~~~~~~  135 (460)
                      .+....
T Consensus        82 ~V~H~s   87 (100)
T d1k5nb_          82 RVNHVT   87 (100)
T ss_dssp             EEECTT
T ss_pred             EEEeCC
Confidence            998753

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.37  E-value=9e-07  Score=62.36  Aligned_cols=77  Identities=14%  Similarity=0.153  Sum_probs=50.8

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeec-------------CccccccEEEeec-----CeEEEee
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLL-------------EPYQTKDIVVMQN-----GSLLFTR  118 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~-------------~~~~~~~~~~~~~-----~~l~i~~  118 (460)
                      ++..|....+.+|++++|.|.....-....+.||+  .+...             ......++....+     ..|.|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            44567777889999999999886543333699997  22111             0111224333221     1589999


Q ss_pred             cCCCCCeEEEEEEEcCC
Q psy535          119 VNQNHQGRYTCTPYNAH  135 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~  135 (460)
                      ++.+|+|.|.|.+....
T Consensus        83 ~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             CCGGGCEEEEEEEECTT
T ss_pred             ccccccccceeeEecCC
Confidence            99999999999877543

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.37  E-value=1.2e-06  Score=61.02  Aligned_cols=76  Identities=17%  Similarity=0.169  Sum_probs=50.3

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCC-CCCeEEEeeC--Ce-e--cCccccccEEEeec-----CeEEEeecCCCCCeEE
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KR-L--LEPYQTKDIVVMQN-----GSLLFTRVNQNHQGRY  127 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~-~--~~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~y  127 (460)
                      +...|....+.+|++++|.|...+.. ....+.||+.  |. +  +.. ...++....+     ..|.|.+++.+|+|.|
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~-~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   80 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESIS-KGGRYVETVNSGSKSFSLRINDLTVEDGGTY   80 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECC-CBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeec-cCCcEeeEEecCCceeeeEecCCcCccCEEE
Confidence            44667788889999999999886532 2236999982  21 1  111 1222222211     1599999999999999


Q ss_pred             EEEEEcCC
Q psy535          128 TCTPYNAH  135 (460)
Q Consensus       128 ~C~~~~~~  135 (460)
                      .|.+....
T Consensus        81 yCA~~~~~   88 (112)
T d1sq2n_          81 RCGLGVAG   88 (112)
T ss_dssp             EEEECBTT
T ss_pred             eEEEecCC
Confidence            99876543

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=1.8e-06  Score=58.22  Aligned_cols=85  Identities=20%  Similarity=0.276  Sum_probs=60.1

Q ss_pred             CCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeee--ccCCCCceEEEccCccCccEEEEEEEEcC
Q psy535          248 APYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP--VTPPGSTQITINRLTPATTYEFQVVGKNE  324 (460)
Q Consensus       248 ~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~~~~~~~a~n~  324 (460)
                      +|.++.. .....++.|+|.++.   . .+.+|.+.|+......+....  ........+.|.+|.|++.|.|++.|.|.
T Consensus         3 aP~~l~v~~~~~~sv~v~W~~p~---~-~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   78 (92)
T d1tdqa2           3 APKNLRVGSRTATSLDLEWDNSE---A-EAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMN   78 (92)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCS---S-CCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEET
T ss_pred             cCcCCEEEEecCCEEEEEEEecC---C-cccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEEEeC
Confidence            4566654 346778999999763   2 236899998876654433322  22334568999999999999999999999


Q ss_pred             CCCCCCCCcEEEE
Q psy535          325 LGDGMLSNIVVVK  337 (460)
Q Consensus       325 ~G~~~~s~~~~~~  337 (460)
                      .|.|.++ .+.++
T Consensus        79 ~g~s~p~-~~~~~   90 (92)
T d1tdqa2          79 SKQSIPA-TMNAR   90 (92)
T ss_dssp             TEECCCE-EEEEE
T ss_pred             CCEecCE-EEEEE
Confidence            9987654 34444

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=5.4e-07  Score=60.20  Aligned_cols=87  Identities=17%  Similarity=0.187  Sum_probs=56.4

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEE-cC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY-NA  134 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~-~~  134 (460)
                      +|.+...|. ..+..|++|+|.|.....  ...+.|+|+|..... .  .........+.|.++...|+|.|+|... ..
T Consensus         4 kPsLsa~P~-~~V~~G~~VTL~C~~~~~--~~~f~L~Keg~~~~~-~--~~~~~~~a~F~i~~v~~~~~G~Y~C~~~~~~   77 (93)
T d1olla2           4 TPTLSVHPG-PEVISGEKVTFYCRLDTA--TSMFLLLKEGRSSHV-Q--RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN   77 (93)
T ss_dssp             CCEEEEESC-SEEETTCEEEEEEECSSS--CSEEEEEEESSSCEE-E--EEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             CCEEEEeCC-CcccCCCcEEEEECCCCC--CCEEEEEECCCccce-e--ecCCCceeEEEecccChhcCceEEEEeECCC
Confidence            466666775 456779999999987543  347999998764321 1  1111122369999999999999999743 22


Q ss_pred             CCCcceeeEEEEEe
Q psy535          135 HGTQGSSGQMEVLV  148 (460)
Q Consensus       135 ~g~~~~~~~~~v~v  148 (460)
                      ......+..+.|.|
T Consensus        78 ~~wS~~SdpLeL~V   91 (93)
T d1olla2          78 HAWSFPSEPVKLLV   91 (93)
T ss_dssp             TEECCCCCCEEEEE
T ss_pred             CCcCCCCCCEEEEe
Confidence            22334566666655

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.35  E-value=1e-06  Score=60.83  Aligned_cols=74  Identities=11%  Similarity=0.209  Sum_probs=50.4

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Ceec----------CccccccEEEeec---CeEEEeecCCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLL----------EPYQTKDIVVMQN---GSLLFTRVNQNH  123 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~----------~~~~~~~~~~~~~---~~l~i~~~~~~d  123 (460)
                      ++..|....+.+|++|+|.|...+.... .+.||+-  |...          ......++.....   ..|.|.+++.+|
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYS-RLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTED   82 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCccc-ccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEccccccc
Confidence            3456777888999999999998765433 6999982  2110          1112233333322   259999999999


Q ss_pred             CeEEEEEEEc
Q psy535          124 QGRYTCTPYN  133 (460)
Q Consensus       124 ~G~y~C~~~~  133 (460)
                      +|.|.|.+..
T Consensus        83 sa~YyCa~~~   92 (107)
T d1ospl1          83 VATYFCQQYW   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CCcEEEeecc
Confidence            9999998754

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=8.2e-07  Score=59.72  Aligned_cols=88  Identities=18%  Similarity=0.190  Sum_probs=57.2

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCC
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      +|.+...|. ..+..|++|+|.|...... ...+.|+|+|..... .  .........+.|.++..+|+|.|+|......
T Consensus         5 kP~Lsa~P~-~~V~~G~~VTL~C~~~~~~-~~~f~L~k~g~~~~~-~--~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~   79 (96)
T d1ucta2           5 KPFLSADRG-LVLMPGENISLTCSSAHIP-FDRFSLAKEGELSLP-Q--HQSGEHPANFSLGPVDLNVSGIYRCYGWYNR   79 (96)
T ss_dssp             CCEEEESSC-SEECTTCCCEEEEECSSSC-CSEEEEEETTCSSCC-S--EEECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CCEEEEeCC-CccCCCCeEEEEEeCCCCC-ceEEEEEECCcccce-E--EcCCCcccEEEEeccccccCcEEEEEEEcCC
Confidence            455666675 4678899999999853222 236899999864322 1  1111122369999999999999999876433


Q ss_pred             C---CcceeeEEEEEe
Q psy535          136 G---TQGSSGQMEVLV  148 (460)
Q Consensus       136 g---~~~~~~~~~v~v  148 (460)
                      .   ....+..++|.|
T Consensus        80 ~p~~~S~~Sd~leL~V   95 (96)
T d1ucta2          80 SPYLWSFPSNALELVV   95 (96)
T ss_dssp             STTEECCCCCCEEEEE
T ss_pred             CCCCccCCCCCEEEEE
Confidence            2   234566666655

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.33  E-value=1.8e-06  Score=60.34  Aligned_cols=75  Identities=16%  Similarity=0.206  Sum_probs=50.4

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCC-CCCeEEEee--CCeec--CccccccEEEeec-----CeEEEeecCCCCCeEEE
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTK--DKRLL--EPYQTKDIVVMQN-----GSLLFTRVNQNHQGRYT  128 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~--~~~~~--~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~y~  128 (460)
                      +...|....+.+|++++|.|...+.. ....+.||+  .+...  ......+.....+     ..|.|.+++.+|+|.|.
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   82 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYK   82 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEe
Confidence            45678888899999999999986532 223699997  22211  1111223322221     15999999999999999


Q ss_pred             EEEEc
Q psy535          129 CTPYN  133 (460)
Q Consensus       129 C~~~~  133 (460)
                      |.+..
T Consensus        83 Ca~~~   87 (113)
T d1vesa_          83 CQAFY   87 (113)
T ss_dssp             EEEEE
T ss_pred             eeeec
Confidence            99854

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.32  E-value=3e-06  Score=58.61  Aligned_cols=74  Identities=18%  Similarity=0.198  Sum_probs=49.7

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Ce-e--c-------CccccccEEEeec---CeEEEeecCCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KR-L--L-------EPYQTKDIVVMQN---GSLLFTRVNQNH  123 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~-~--~-------~~~~~~~~~~~~~---~~l~i~~~~~~d  123 (460)
                      ++..|....+.+|++++|.|........ .+.||+-  +. +  +       ......++....+   ..|.|.+++.+|
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~-~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYS-YLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPED   82 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCc-ccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccC
Confidence            3456888888999999999998654433 5999982  21 1  1       0111223322222   259999999999


Q ss_pred             CeEEEEEEEc
Q psy535          124 QGRYTCTPYN  133 (460)
Q Consensus       124 ~G~y~C~~~~  133 (460)
                      +|.|.|.+..
T Consensus        83 Sa~YyCA~~~   92 (109)
T d1mqkl_          83 FGSYYCQHHY   92 (109)
T ss_dssp             CEEEEEEECS
T ss_pred             CeeEEEeeeC
Confidence            9999998763

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.32  E-value=1.6e-06  Score=59.63  Aligned_cols=74  Identities=15%  Similarity=0.296  Sum_probs=49.9

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeec----------CccccccEEEee---cCeEEEeecCCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLL----------EPYQTKDIVVMQ---NGSLLFTRVNQNH  123 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~----------~~~~~~~~~~~~---~~~l~i~~~~~~d  123 (460)
                      ++..|....+.+|++++|.|........ .+.|||  .|...          ......+.....   +..|.|.+++.+|
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~-~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISG-YLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESED   82 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCC-CEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccC
Confidence            3456777888899999999998765443 599998  22211          011122222222   2269999999999


Q ss_pred             CeEEEEEEEc
Q psy535          124 QGRYTCTPYN  133 (460)
Q Consensus       124 ~G~y~C~~~~  133 (460)
                      +|.|.|.+.+
T Consensus        83 sa~YyCa~~~   92 (107)
T d1c5cl1          83 FADYYCLQYA   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CeEEEEecCc
Confidence            9999998754

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.32  E-value=1.4e-06  Score=61.20  Aligned_cols=76  Identities=17%  Similarity=0.228  Sum_probs=51.5

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCC--eecC----------ccccccEEEeec-----CeEEEeecCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDK--RLLE----------PYQTKDIVVMQN-----GSLLFTRVNQ  121 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~----------~~~~~~~~~~~~-----~~l~i~~~~~  121 (460)
                      +...|....+.+|++++|.|........ .+.||+-.  ....          .....+.....+     .+|.|.+++.
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~-~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~   81 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFS-NLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL   81 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCS-EEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCcc-CceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccCh
Confidence            4566888889999999999998765443 69999721  1100          001122222211     2599999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy535          122 NHQGRYTCTPYNAH  135 (460)
Q Consensus       122 ~d~G~y~C~~~~~~  135 (460)
                      +|+|.|.|.+....
T Consensus        82 ~Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          82 SDSASYICVVSDRG   95 (114)
T ss_dssp             GGCSEEEEEEECSC
T ss_pred             hhCcccceeeecCC
Confidence            99999999997643

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.32  E-value=4.7e-06  Score=55.26  Aligned_cols=78  Identities=19%  Similarity=0.305  Sum_probs=57.3

Q ss_pred             CCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCC
Q psy535          248 APYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG  326 (460)
Q Consensus       248 ~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G  326 (460)
                      +|.++.. .....++.|+|.++..    ...+|.+.|+..+... ..... ......+.|.+|.|++.|.|++.|.|..|
T Consensus         2 aP~~l~v~~~t~~sv~v~W~~p~~----~~~~Y~v~~~~~~~~~-~~~~~-~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~   75 (87)
T d1qr4a1           2 NPKDLEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPSGKK-NEMEI-PVDSTSFILRGLDAGTEYTISLVAEKGRH   75 (87)
T ss_dssp             CCEEEEEESCCSSEEEEEEECCSS----CCSEEEEEEECTTCCE-EEEEE-CTTCSEEEEESCCSSCEEEEEEEEESSSC
T ss_pred             cCcCcEEEEecCCEEEEEEECCCC----CcceeEEEeecCCcce-eEEeC-CCCcCEEEECCCCcCCEEEEEEEEEcCCC
Confidence            4555554 3567799999997632    2368999998766443 33332 33667899999999999999999999999


Q ss_pred             CCCCC
Q psy535          327 DGMLS  331 (460)
Q Consensus       327 ~~~~s  331 (460)
                      .+.++
T Consensus        76 ~s~~~   80 (87)
T d1qr4a1          76 KSKPT   80 (87)
T ss_dssp             BCCCE
T ss_pred             CccCE
Confidence            77543

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=1.7e-06  Score=58.72  Aligned_cols=80  Identities=10%  Similarity=0.176  Sum_probs=50.8

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCeEEE---eecCCCCCeEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLF---TRVNQNHQGRYTCT  130 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C~  130 (460)
                      .+|.+.+.+.. ....|+.++|.|.+.|. |....|+|++||..+............++++.+   ..+...+.+.|+|+
T Consensus         3 ~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~   81 (99)
T d1lk2b_           3 KTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACR   81 (99)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEE
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEE
Confidence            45665544322 13457789999999995 555679999999987643333333334443222   23455677889999


Q ss_pred             EEcCC
Q psy535          131 PYNAH  135 (460)
Q Consensus       131 ~~~~~  135 (460)
                      +....
T Consensus        82 V~H~s   86 (99)
T d1lk2b_          82 VKHDS   86 (99)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            98753

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.1e-07  Score=66.28  Aligned_cols=91  Identities=19%  Similarity=0.275  Sum_probs=63.4

Q ss_pred             CCCcee-eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCC--------------eee---------eeccCCCCce
Q psy535          248 APYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD--------------WLP---------IPVTPPGSTQ  303 (460)
Q Consensus       248 ~p~~~~-~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~---------~~~~~~~~~~  303 (460)
                      .|.++. ......++.|+|.++...+...+.+|.+.|+......              |..         ..........
T Consensus         4 ~plnl~~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (125)
T d2dtge3           4 ELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPG   83 (125)
T ss_dssp             CBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCE
T ss_pred             CCEEEEEEEecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccCE
Confidence            344444 3556789999999886655555689999887754321              111         1112224567


Q ss_pred             EEEccCccCccEEEEEEEEcCCCC-----CCCCCcEEEEc
Q psy535          304 ITINRLTPATTYEFQVVGKNELGD-----GMLSNIVVVKT  338 (460)
Q Consensus       304 ~~i~~l~~~~~~~~~~~a~n~~G~-----~~~s~~~~~~~  338 (460)
                      +.|.+|.|.+.|.|++.|.|..|.     |..|..+.++|
T Consensus        84 ~~l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~v~~~T  123 (125)
T d2dtge3          84 WLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQT  123 (125)
T ss_dssp             EEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBC
T ss_pred             EEECCCccCCEEEEEEEEEeCCCccCCCCCCCcccEEEEc
Confidence            999999999999999999999995     55677766665

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2e-06  Score=57.74  Aligned_cols=73  Identities=26%  Similarity=0.314  Sum_probs=55.2

Q ss_pred             eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCCCCCCC
Q psy535          255 VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELGDGMLS  331 (460)
Q Consensus       255 ~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G~~~~s  331 (460)
                      .....++.|.|.++.   . .+.+|.+.|+..+...+............+.|.+|.|+..|.|++.|.|..|.+..+
T Consensus         7 ~~t~~sv~l~W~~p~---~-~~~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~~g~s~~~   79 (91)
T d1fnaa_           7 AATPTSLLISWDAPA---V-TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPAS   79 (91)
T ss_dssp             EECSSCEEEECCCCS---S-CCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEECTTCCSSCS
T ss_pred             EeCCCEEEEEEEccc---e-EecEEEEEEEcCCCCceeEEEEeCCCccEEEeCCCCCCCEEEEEEEEEeCCccCCCc
Confidence            445678999999763   2 236899999887655444332233366789999999999999999999999987654

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=3.7e-07  Score=62.57  Aligned_cols=82  Identities=12%  Similarity=0.137  Sum_probs=54.7

Q ss_pred             CCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCC--e-eeeeccCCCCceEEEccCccCccEEEEEEEEcC
Q psy535          248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKD--W-LPIPVTPPGSTQITINRLTPATTYEFQVVGKNE  324 (460)
Q Consensus       248 ~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~  324 (460)
                      +|.++..........|.|.|+...+...   |.+.+...+...  | ............+.+.+|.++..|.|||+|.|.
T Consensus         3 ~P~nv~v~s~n~~~~L~W~pP~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~n~   79 (98)
T d1fyhb1           3 TPTNVTIESYNMNPIVYWEYQIMPQVPV---FTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKARVG   79 (98)
T ss_dssp             CCEEEEEECBSSCCEEEEECCCCSSCCE---EEEEEEETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEEET
T ss_pred             cCCceEEEEeCCcEEEEECCCCCCCCCc---eeEEEEEeccccceeEEeeeecccceeeeEecccCCCCEEEEEEEEEcC
Confidence            5777777666677789999887666543   333333333222  2 222222334556778889999999999999999


Q ss_pred             CCCCCCCC
Q psy535          325 LGDGMLSN  332 (460)
Q Consensus       325 ~G~~~~s~  332 (460)
                      .|.+.++.
T Consensus        80 ~g~S~ws~   87 (98)
T d1fyhb1          80 QKESAYAK   87 (98)
T ss_dssp             TEECCCEE
T ss_pred             CcccCCcc
Confidence            99876654

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.6e-06  Score=57.48  Aligned_cols=82  Identities=18%  Similarity=0.257  Sum_probs=57.4

Q ss_pred             CCCCCCceeeee-e-cceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeee-eccCCCCceEEEccCccCccEEEEEEE
Q psy535          245 QPHAPYNITGVA-T-EFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPI-PVTPPGSTQITINRLTPATTYEFQVVG  321 (460)
Q Consensus       245 ~p~~p~~~~~~~-~-~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~~~~a  321 (460)
                      |+.+|.++.... . ...+.|.|.++..  +. +.+|.+.|+......+... .........+.|.+|.+++.|.+++.|
T Consensus         1 P~~PP~~l~v~~~~~ts~i~v~W~~p~~--~~-i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a   77 (94)
T d1fnfa1           1 PLSPPTNLHLEANPDTGVLTVSWERSTT--PD-ITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYT   77 (94)
T ss_dssp             CCCCCEEEEEEECSSSSCEEEEEECCSC--SS-CCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEE
T ss_pred             CCCcCcCcEEEEecCCCEEEEEeeCCCC--CC-eeEEEEEEEEecccCceEEEEEeCCCccEEEECCCCCCCEEEEEEEE
Confidence            355777776543 2 3458999997632  22 4789999887654333222 222335678999999999999999999


Q ss_pred             EcCCCCCC
Q psy535          322 KNELGDGM  329 (460)
Q Consensus       322 ~n~~G~~~  329 (460)
                      .|..|.+.
T Consensus        78 ~~~~g~s~   85 (94)
T d1fnfa1          78 VKDDKESV   85 (94)
T ss_dssp             EETTEECC
T ss_pred             EcCCCEeC
Confidence            99988653

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3.9e-07  Score=61.46  Aligned_cols=90  Identities=17%  Similarity=0.227  Sum_probs=56.6

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcC-C
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNA-H  135 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~-~  135 (460)
                      |.+...|. ..+..|++|+|.|...-  ....+.++|+|..................+.|.++...|+|.|+|..... .
T Consensus         5 P~Lsa~Ps-~~V~~G~~VTL~C~~~~--~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (96)
T d1ugna1           5 PTLWAEPG-SVITQGSPVTLRCQGGQ--ETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTA   81 (96)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECCT--TCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTT
T ss_pred             CEEEeECC-CccCCCCcEEEEEeCCC--CCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeCCCC
Confidence            45555665 45678999999999643  23368999987642110000000012346999999999999999987543 2


Q ss_pred             CCcceeeEEEEEee
Q psy535          136 GTQGSSGQMEVLVR  149 (460)
Q Consensus       136 g~~~~~~~~~v~v~  149 (460)
                      .....+..++|.|.
T Consensus        82 ~~S~~Sd~leL~Vt   95 (96)
T d1ugna1          82 GRSESSDPLELVVT   95 (96)
T ss_dssp             EECCCCCCEEEEEE
T ss_pred             CccccCCCEEEEEe
Confidence            33445666666653

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.28  E-value=2.2e-06  Score=59.25  Aligned_cols=74  Identities=14%  Similarity=0.148  Sum_probs=49.6

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC----------ccccccEEEeec---CeEEEeecCCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE----------PYQTKDIVVMQN---GSLLFTRVNQNH  123 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~----------~~~~~~~~~~~~---~~l~i~~~~~~d  123 (460)
                      ++..|....+.+|++++|.|........ .+.||+-  |....          .....++....+   ..|.|.+++.+|
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGN-NLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCc-ceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCC
Confidence            4466778889999999999987654333 5999982  22110          011223332222   259999999999


Q ss_pred             CeEEEEEEEc
Q psy535          124 QGRYTCTPYN  133 (460)
Q Consensus       124 ~G~y~C~~~~  133 (460)
                      +|.|.|.+.+
T Consensus        83 sa~YyCa~~~   92 (107)
T d1j1pl_          83 FGMYFCQQAN   92 (107)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEEEcCC
Confidence            9999997653

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.28  E-value=3.6e-06  Score=58.00  Aligned_cols=74  Identities=14%  Similarity=0.239  Sum_probs=49.4

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Cee---c-------CccccccEEEeecC---eEEEeecCCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRL---L-------EPYQTKDIVVMQNG---SLLFTRVNQNH  123 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~-------~~~~~~~~~~~~~~---~l~i~~~~~~d  123 (460)
                      ++..|....+.+|++++|.|........ .+.||+-  +..   +       ......+.....++   .|.|.+++.+|
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D   82 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISK-SLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPED   82 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCC-ceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEecc
Confidence            4456777888999999999998765433 5999982  111   0       00011222222232   59999999999


Q ss_pred             CeEEEEEEEc
Q psy535          124 QGRYTCTPYN  133 (460)
Q Consensus       124 ~G~y~C~~~~  133 (460)
                      +|.|.|.+.+
T Consensus        83 sa~YyCA~~~   92 (108)
T d1jhll_          83 FAMYICQQHN   92 (108)
T ss_dssp             CSEEEEEECS
T ss_pred             ceEEEEeeCC
Confidence            9999997654

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.3e-06  Score=58.05  Aligned_cols=73  Identities=18%  Similarity=0.336  Sum_probs=46.5

Q ss_pred             ceeeeecceeeEEEEEEEecCC-CCCeEEEeeCC--ee---c-------CccccccEEEeec---C--eEEEeecCCCCC
Q psy535           63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKDK--RL---L-------EPYQTKDIVVMQN---G--SLLFTRVNQNHQ  124 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~---~-------~~~~~~~~~~~~~---~--~l~i~~~~~~d~  124 (460)
                      +......+|++++|.|...... ....+.|+|..  ..   +       ......+.....+   +  .|.|.+++.+|+
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence            3456678899999999875432 22357899821  11   0       1111233333221   2  599999999999


Q ss_pred             eEEEEEEEcCC
Q psy535          125 GRYTCTPYNAH  135 (460)
Q Consensus       125 G~y~C~~~~~~  135 (460)
                      |.|.|.+....
T Consensus        83 G~Y~C~v~~~~   93 (108)
T d1hkfa_          83 GHYWCRIYRPS   93 (108)
T ss_dssp             EEEEEEEECTT
T ss_pred             EEEEEEEecCC
Confidence            99999987543

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=8.8e-07  Score=60.45  Aligned_cols=82  Identities=16%  Similarity=0.163  Sum_probs=62.2

Q ss_pred             CCCceeeeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCC---CceEEEccCccCccEEEEEEEEcC
Q psy535          248 APYNITGVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPG---STQITINRLTPATTYEFQVVGKNE  324 (460)
Q Consensus       248 ~p~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~l~~~~~~~~~~~a~n~  324 (460)
                      +|.++..........|.|+|+...+..  ..|.++++..+...|..+......   ...+.+.++..+..|.|||+|.|.
T Consensus         6 ~P~nv~~~s~n~~~~L~W~pp~~~g~~--~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVrA~n~   83 (99)
T d1y6kr1           6 SPPSVWFEAEFFHHILHWTPIPQQSES--TCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRAVDG   83 (99)
T ss_dssp             CCSCEEEEEETTEEEEEECCCTTCCTT--CEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEEEEET
T ss_pred             CCCcceEEEECCEEEEEEcCCCCcCCC--CEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEEEEEcC
Confidence            366777777888999999987766654  469999998888888876432211   123456788889999999999999


Q ss_pred             CCCCCCC
Q psy535          325 LGDGMLS  331 (460)
Q Consensus       325 ~G~~~~s  331 (460)
                      .|.+.++
T Consensus        84 ~g~S~Ws   90 (99)
T d1y6kr1          84 SRHSQWT   90 (99)
T ss_dssp             TEECCCE
T ss_pred             CCcCCCc
Confidence            9977654

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.8e-06  Score=56.60  Aligned_cols=85  Identities=19%  Similarity=0.204  Sum_probs=60.7

Q ss_pred             CCCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCC
Q psy535          247 HAPYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNEL  325 (460)
Q Consensus       247 ~~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~  325 (460)
                      .+|.++.. .....++.|+|.++.   . .+.+|.+.|+..+.. +..... ......+.|.+|.|++.|.|++.|.|..
T Consensus         3 ~~P~~l~~~~~~~~sv~l~W~~p~---~-~~~~Y~v~~~~~~~~-~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   76 (93)
T d2cuma1           3 EAPRDLEAKEVTPRTALLTWTEPP---V-RPAGYLLSFHTPGGQ-TQEILL-PGGITSHQLLGLFPSTSYNARLQAMWGQ   76 (93)
T ss_dssp             CCCEEEEEESCCSSCEEEEEECCS---S-CCSEEEEEEECTTSC-EEEEEE-CSSCSEEEECSCCTTCEEEEEEEEEBTT
T ss_pred             CcCCCCEEEEeCCCEEEEEEEccc---c-ccccEEEEEEccccc-cEEEEE-CCCccEEEEeCccCCCEEEEEEEEEeCC
Confidence            35566654 456789999999763   1 247899999876543 333332 3366789999999999999999999999


Q ss_pred             CCCCCCCcEEEEc
Q psy535          326 GDGMLSNIVVVKT  338 (460)
Q Consensus       326 G~~~~s~~~~~~~  338 (460)
                      |.+.++ ...+.|
T Consensus        77 g~s~~~-~~~~tT   88 (93)
T d2cuma1          77 SLLPPV-STSFTT   88 (93)
T ss_dssp             BCCCCE-EEEEEC
T ss_pred             CCCCCE-EEEEEe
Confidence            987654 344444

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.26  E-value=2.9e-06  Score=58.65  Aligned_cols=74  Identities=15%  Similarity=0.213  Sum_probs=49.8

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Ceec----------CccccccEEEeec---CeEEEeecCCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLL----------EPYQTKDIVVMQN---GSLLFTRVNQNH  123 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~----------~~~~~~~~~~~~~---~~l~i~~~~~~d  123 (460)
                      ++..|....+.+|++|+|.|........ .+.||+-  +...          ......+.....+   ..|.|.+++.+|
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGT-YVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADD   82 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCC-ceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecC
Confidence            3456777888999999999998765443 6999972  2110          0011223322222   259999999999


Q ss_pred             CeEEEEEEEc
Q psy535          124 QGRYTCTPYN  133 (460)
Q Consensus       124 ~G~y~C~~~~  133 (460)
                      +|.|.|.+..
T Consensus        83 Sa~YyCa~~~   92 (107)
T d1kcvl1          83 DADYYCGQSY   92 (107)
T ss_dssp             CEEEEEEECS
T ss_pred             CceEEEEecC
Confidence            9999998753

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.2e-06  Score=62.05  Aligned_cols=88  Identities=11%  Similarity=0.066  Sum_probs=53.2

Q ss_pred             cceeeeecceeeEEEEEEEecCC--CCCeEEEeeCCe--e----------cCccccccEEEeec-----CeEEEeecCCC
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANP--TFQYVTWTKDKR--L----------LEPYQTKDIVVMQN-----GSLLFTRVNQN  122 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~--~~~~v~W~~~~~--~----------~~~~~~~~~~~~~~-----~~l~i~~~~~~  122 (460)
                      .|....+.+|++++|.|......  ....+.|+|...  .          .......+.....+     .+|.|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            56777888999999999874321  122478987321  1          01111223333222     25999999999


Q ss_pred             CCeEEEEEEEcCCCCcceeeEEEEEeeCC
Q psy535          123 HQGRYTCTPYNAHGTQGSSGQMEVLVRKP  151 (460)
Q Consensus       123 d~G~y~C~~~~~~g~~~~~~~~~v~v~~~  151 (460)
                      |+|.|.|.+......  ....+.|.|...
T Consensus        85 DsG~Y~C~v~~~~~~--~~~~v~L~V~~~  111 (116)
T d1xeda_          85 DSGRYKCGLGINSRG--LSFDVSLEVLEH  111 (116)
T ss_dssp             GCEEEEEEESCGGGC--CEEEEEEEEECC
T ss_pred             CCEEEEEEEEcCCCC--ceEeEEEEEECC
Confidence            999999998643322  233456655443

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.25  E-value=1.4e-06  Score=61.24  Aligned_cols=77  Identities=16%  Similarity=0.155  Sum_probs=49.2

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC------cc-----cccc--EEEeecC---eEEEeecC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE------PY-----QTKD--IVVMQNG---SLLFTRVN  120 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~------~~-----~~~~--~~~~~~~---~l~i~~~~  120 (460)
                      ++..|....+.+|++|+|.|..........+.||+  .+....      ..     ...+  ......+   .|.|.+++
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            44567777889999999999876543333588998  222110      00     0011  1111111   59999999


Q ss_pred             CCCCeEEEEEEEcCC
Q psy535          121 QNHQGRYTCTPYNAH  135 (460)
Q Consensus       121 ~~d~G~y~C~~~~~~  135 (460)
                      .+|+|.|.|.+....
T Consensus        83 ~~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          83 VVDSAVYFCALSGFY   97 (114)
T ss_dssp             GGGCEEEEEEEECSB
T ss_pred             cccCCCceEeCCCCC
Confidence            999999999876543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.25  E-value=3.7e-06  Score=57.87  Aligned_cols=73  Identities=12%  Similarity=0.229  Sum_probs=49.4

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Cee---c-------CccccccEEEeec---CeEEEeecCCCCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRL---L-------EPYQTKDIVVMQN---GSLLFTRVNQNHQ  124 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~-------~~~~~~~~~~~~~---~~l~i~~~~~~d~  124 (460)
                      +..|....+.+|++++|.|........ .+.||+-  |..   +       ......++....+   ..|.|.+++.+|+
T Consensus         4 tQ~P~sl~~~~G~svtL~C~~~~~~~~-~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1op3k1           4 TQSPSTLSASVGDTITITCRASQSIET-WLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDF   82 (106)
T ss_dssp             EEECSEEEECTTCEEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCCCCC-cEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCC
Confidence            456888889999999999998664433 5999982  211   1       0111123332222   2599999999999


Q ss_pred             eEEEEEEEc
Q psy535          125 GRYTCTPYN  133 (460)
Q Consensus       125 G~y~C~~~~  133 (460)
                      |.|.|.+..
T Consensus        83 a~YyCa~~~   91 (106)
T d1op3k1          83 ATYHCQHYA   91 (106)
T ss_dssp             SEEEEEEEC
T ss_pred             CcEeeeeCC
Confidence            999998754

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=4e-07  Score=71.59  Aligned_cols=82  Identities=13%  Similarity=0.197  Sum_probs=42.9

Q ss_pred             CCCCCcceEEEeec-ceEEEEecCCCCCCccceEEEEEEEEcCCeeeeccccCCCCcccccccceecCceeeeeeccCCC
Q psy535          342 KPGPPRNVSVTEVN-NGFVISWQPPLERASLIQYYLIKYRTDGSWKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTPP  420 (460)
Q Consensus       342 ~P~~p~~~~~~~~~-~~v~l~W~~~~~~~~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (460)
                      .|.+|.++.+...+ ++|.|+|++|...++.+.+|.|+|+..+.-...                               .
T Consensus         2 ~Ps~P~~~~~~~~s~~si~vsW~pP~~~ng~i~~Y~V~~~~~~~~~~~-------------------------------~   50 (196)
T d2dtge2           2 NPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSEL-------------------------------F   50 (196)
T ss_dssp             CCCCCEEEEEEECSSSCEEEEEECCCCSSSSCSEEECCEEEECCCCSC-------------------------------T
T ss_pred             cCcCCcCCEEEeccCCEEEEEEECCCCCCCcEEEEEEEEEcCCCCCce-------------------------------e
Confidence            48999999999887 599999999988888999999999975420000                               0


Q ss_pred             CcceEEECCCCcCceEEEEEEEeecCCCCCCCce
Q psy535          421 GSTQITINRLTPATTYEFQVVGKNELGDGMLSNI  454 (460)
Q Consensus       421 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~  454 (460)
                      .........|.+.+.|.++|.|.|..|.+..+..
T Consensus        51 ~~~~~~~~~~~~~~~y~~~v~~~~~~~~~~~~~~   84 (196)
T d2dtge2          51 ELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYE   84 (196)
T ss_dssp             TCSSSCSCCCCCC---------------------
T ss_pred             EEeeEEeccccceeEEEEEEEEEcCCccccCcCC
Confidence            1111122356778899999999999987765543

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=4.2e-06  Score=55.34  Aligned_cols=77  Identities=17%  Similarity=0.273  Sum_probs=56.7

Q ss_pred             CCCceee-eeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEEEEcCCC
Q psy535          248 APYNITG-VATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVVGKNELG  326 (460)
Q Consensus       248 ~p~~~~~-~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~a~n~~G  326 (460)
                      +|.++.. .....++.|+|.++..    ...+|.+.|+..+...+.. ... .....+.+.+|.+++.|.|++.|.|..|
T Consensus         3 ~P~nl~v~~~~~~s~~l~W~~p~~----~~~~Y~v~~~~~~~~~~~~-~~~-~~~~~~~~~~L~p~t~Y~v~V~a~~~~~   76 (86)
T d1tdqa3           3 SPRDLMVTASSETSISLIWTKASG----PIDHYRITFTPSSGISSEV-TVP-RDRTSYTLTDLEPGAEYIISITAERGRQ   76 (86)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCCS----CCSEEEEEEECSSSCCEEE-EEE-SSCSEEEECCCCTTCCEEEEEEEEETTE
T ss_pred             cCCCCEEEEecCCEEEEEEeCCCC----CccceEEEEecccccceEE-EeC-CCccEEEECCCccccEEEEEEEEEcCCC
Confidence            5566654 4567789999998631    2368999998766543332 222 2667899999999999999999999988


Q ss_pred             CCCC
Q psy535          327 DGML  330 (460)
Q Consensus       327 ~~~~  330 (460)
                      .+.+
T Consensus        77 ~s~p   80 (86)
T d1tdqa3          77 QSLE   80 (86)
T ss_dssp             ECCC
T ss_pred             EECC
Confidence            7654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.23  E-value=2.4e-06  Score=60.09  Aligned_cols=73  Identities=14%  Similarity=0.338  Sum_probs=49.1

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC-----Ceec---C-----------c-cccccEEEee-----cCeE
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD-----KRLL---E-----------P-YQTKDIVVMQ-----NGSL  114 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~-----~~~~---~-----------~-~~~~~~~~~~-----~~~l  114 (460)
                      ...|....+.+|++++|.|.+.+......+.||+-     ++.+   .           . ....+.....     ...|
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            34677788999999999999876444446999972     2211   0           0 0111222211     1259


Q ss_pred             EEeecCCCCCeEEEEEEE
Q psy535          115 LFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus       115 ~i~~~~~~d~G~y~C~~~  132 (460)
                      .|.+++.+|+|.|.|.+.
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             eecccCCCCCcEEEEeEc
Confidence            999999999999999875

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.23  E-value=1.7e-06  Score=60.65  Aligned_cols=77  Identities=16%  Similarity=0.285  Sum_probs=50.8

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC------c----cccccEEEeec-----CeEEEeecCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE------P----YQTKDIVVMQN-----GSLLFTRVNQ  121 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~------~----~~~~~~~~~~~-----~~l~i~~~~~  121 (460)
                      +...|....+.+|++++|.|...+... ..+.|||  .|....      .    ....+......     ..|.|.+++.
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~-~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAI-YNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP   81 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCE-EEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcc-cCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCC
Confidence            455677888899999999999876543 3689998  222110      0    00111111111     1599999999


Q ss_pred             CCCeEEEEEEEcCCC
Q psy535          122 NHQGRYTCTPYNAHG  136 (460)
Q Consensus       122 ~d~G~y~C~~~~~~g  136 (460)
                      +|+|.|.|.+....+
T Consensus        82 ~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          82 GDSATYLCAVRPTSG   96 (113)
T ss_dssp             GGCEEEEEEEEESSS
T ss_pred             CCCcEEeEeEecCCC
Confidence            999999999875443

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=6e-06  Score=55.07  Aligned_cols=77  Identities=22%  Similarity=0.372  Sum_probs=48.2

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccc--cccEEEeecCe---EEEeecCCCCCeEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQ--TKDIVVMQNGS---LLFTRVNQNHQGRYT  128 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~---l~i~~~~~~d~G~y~  128 (460)
                      .||.+.+...    ..++.++|.|.+.|. |+...|+|++||+.+....  ........+++   .....+...+.+.|+
T Consensus         3 vpP~V~v~~~----~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~yt   78 (94)
T d1de4a1           3 VPPLVKVTHH----VTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYT   78 (94)
T ss_dssp             BCCEEEEEEE----ECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEE
T ss_pred             CCCEEEEEEc----CCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEE
Confidence            4566554221    235678999999995 6667899999999875322  12222223333   233345566778899


Q ss_pred             EEEEcCC
Q psy535          129 CTPYNAH  135 (460)
Q Consensus       129 C~~~~~~  135 (460)
                      |++.+..
T Consensus        79 C~V~H~s   85 (94)
T d1de4a1          79 CQVEHPG   85 (94)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9998753

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.21  E-value=2.3e-06  Score=59.30  Aligned_cols=74  Identities=16%  Similarity=0.255  Sum_probs=48.8

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Cee---c-------CccccccEEEeec---CeEEEeecCCCCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRL---L-------EPYQTKDIVVMQN---GSLLFTRVNQNHQ  124 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~-------~~~~~~~~~~~~~---~~l~i~~~~~~d~  124 (460)
                      +..|....+.+|++++|.|..........+.||+-  |..   +       ......++.....   ..|.|.+++.+|+
T Consensus         5 tQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Ds   84 (108)
T d2fx7l1           5 TQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDF   84 (108)
T ss_dssp             ECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheeccc
Confidence            45677788899999999998765433335899982  221   1       0011222322222   2599999999999


Q ss_pred             eEEEEEEEc
Q psy535          125 GRYTCTPYN  133 (460)
Q Consensus       125 G~y~C~~~~  133 (460)
                      |.|.|.+.+
T Consensus        85 a~YyCa~~~   93 (108)
T d2fx7l1          85 AVYYCQQYG   93 (108)
T ss_dssp             SEEEEEECS
T ss_pred             EEEeeecCC
Confidence            999998753

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.20  E-value=3.4e-06  Score=58.12  Aligned_cols=74  Identities=16%  Similarity=0.191  Sum_probs=49.2

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeec----------CccccccEEEeec---CeEEEeecCCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLL----------EPYQTKDIVVMQN---GSLLFTRVNQNH  123 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~----------~~~~~~~~~~~~~---~~l~i~~~~~~d  123 (460)
                      ++..|....+.+|++++|.|........ .+.||+  .|...          ......++.....   ..|.|.+++++|
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGT-NVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSED   82 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCC-ceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheec
Confidence            3456777888999999999997654333 699997  22111          0011223333222   259999999999


Q ss_pred             CeEEEEEEEc
Q psy535          124 QGRYTCTPYN  133 (460)
Q Consensus       124 ~G~y~C~~~~  133 (460)
                      ++.|.|.+..
T Consensus        83 sA~YyCa~~~   92 (107)
T d1mexl1          83 LAEYFCQQYN   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             ceeEEEeECC
Confidence            9999998653

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.3e-06  Score=57.66  Aligned_cols=86  Identities=12%  Similarity=0.108  Sum_probs=56.5

Q ss_pred             CCCCCceeeee--ecceEEEEeecCCCCCCC---ceeeEEEEEEecCCCCeeeeeccCCCCceEEEccCccCccEEEEEE
Q psy535          246 PHAPYNITGVA--TEFSVTLEWLPGYSGGPD---LKQNYVIWYREQGNKDWLPIPVTPPGSTQITINRLTPATTYEFQVV  320 (460)
Q Consensus       246 p~~p~~~~~~~--~~~~~~l~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~  320 (460)
                      |.||.++.+..  ....+.|+|.++......   ....|.+.|+..+...|......  ...   +..|.++..|.|+|+
T Consensus         2 PdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~~~~~--~~t---~~~L~p~~~Y~v~VR   76 (94)
T d3d85d3           2 PDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFT--DKT---SATVICRKNASISVR   76 (94)
T ss_dssp             CCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEE--SSS---EEEECCCSSCEEEEE
T ss_pred             CCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEEeccc--cce---EEEecCCCCEEEEEE
Confidence            77888887643  335699999987543322   24789999998777767655443  222   235779999999999


Q ss_pred             EEcCCCCCCCCCcEEE
Q psy535          321 GKNELGDGMLSNIVVV  336 (460)
Q Consensus       321 a~n~~G~~~~s~~~~~  336 (460)
                      |.+..|.|.+|....+
T Consensus        77 a~~~~~~g~WSeWS~~   92 (94)
T d3d85d3          77 AQDRYYSSSWSEWASV   92 (94)
T ss_dssp             EEESSSCCCCCCCEEE
T ss_pred             EecCCCCCCCccCcCC
Confidence            9999988888877654

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.20  E-value=4.3e-06  Score=57.65  Aligned_cols=74  Identities=14%  Similarity=0.218  Sum_probs=49.8

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Ceec----------CccccccEEEeecC---eEEEeecCCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLL----------EPYQTKDIVVMQNG---SLLFTRVNQNH  123 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~----------~~~~~~~~~~~~~~---~l~i~~~~~~d  123 (460)
                      ++..|....+.+|++|+|.|........ .+.||+-  |...          ......+.....++   .|.|.+++.+|
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTS-ALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPED   82 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCc-cEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCc
Confidence            4567888888999999999998754333 6899982  2111          01112233332222   59999999999


Q ss_pred             CeEEEEEEEc
Q psy535          124 QGRYTCTPYN  133 (460)
Q Consensus       124 ~G~y~C~~~~  133 (460)
                      +|.|.|.+.+
T Consensus        83 sA~YyCa~~~   92 (107)
T d1tjgl1          83 FATYYCQQLH   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CceEEEEECc
Confidence            9999997653

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.20  E-value=5.3e-06  Score=56.03  Aligned_cols=80  Identities=13%  Similarity=0.219  Sum_probs=50.2

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCcccc-ccEEEeecCeEE---EeecCCCCCeEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQT-KDIVVMQNGSLL---FTRVNQNHQGRYTC  129 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~l~---i~~~~~~d~G~y~C  129 (460)
                      .||.+.+.|.. .+..|+.++|.|.+.|. |+...|+|++||..+..... .......++++.   ...+..++.+.|+|
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDC   80 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEE
Confidence            35666655433 34567889999999996 55568999999988753211 112223333322   22344567788999


Q ss_pred             EEEcCC
Q psy535          130 TPYNAH  135 (460)
Q Consensus       130 ~~~~~~  135 (460)
                      ++....
T Consensus        81 ~V~H~s   86 (100)
T d1muja1          81 KVEHWG   86 (100)
T ss_dssp             EEECTT
T ss_pred             EEEECC
Confidence            998754

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.20  E-value=7e-06  Score=57.15  Aligned_cols=72  Identities=11%  Similarity=0.238  Sum_probs=48.2

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Ceec--------------CccccccEEEeec----CeEEEeec
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLL--------------EPYQTKDIVVMQN----GSLLFTRV  119 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~--------------~~~~~~~~~~~~~----~~l~i~~~  119 (460)
                      ...|....+.+|++++|.|......  ..+.|||-  |...              ......++.....    ..|.|.++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~~~--~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~   80 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDPISGH--DNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPA   80 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEECCTTC--SEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSC
T ss_pred             EECCCEEEECCCCCEEEEEEECCCC--ceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCc
Confidence            4567788899999999999865432  36999972  2110              0111223332222    25999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy535          120 NQNHQGRYTCTPYN  133 (460)
Q Consensus       120 ~~~d~G~y~C~~~~  133 (460)
                      +.+|+|.|.|.+..
T Consensus        81 ~~~Dsa~YyCa~~~   94 (111)
T d2esve1          81 ELEDSGVYFCASSQ   94 (111)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             ccCCCceEEEeeeC
Confidence            99999999998654

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.8e-06  Score=59.75  Aligned_cols=72  Identities=14%  Similarity=0.283  Sum_probs=48.3

Q ss_pred             eeecceeeEEEEEEEecCCC---CCeEEEeeCCeecC----------ccccccEEEee--cCeEEEeecCCCCCeEEEEE
Q psy535           66 QYLPFRLQGVVQCHIKANPT---FQYVTWTKDKRLLE----------PYQTKDIVVMQ--NGSLLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~~~~~~----------~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~  130 (460)
                      .....|++++|.|.......   ...+.|.+++..+.          +....+.....  +.+|.|.+++.+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            45678999999998754321   13578888765532          11123333333  23799999999999999999


Q ss_pred             EEcCCCC
Q psy535          131 PYNAHGT  137 (460)
Q Consensus       131 ~~~~~g~  137 (460)
                      +.+..+.
T Consensus        84 V~~~~~~   90 (105)
T d1dr9a1          84 VLKYEKD   90 (105)
T ss_dssp             EEECCTT
T ss_pred             EEeCCCC
Confidence            9765443

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.18  E-value=5e-06  Score=57.27  Aligned_cols=74  Identities=16%  Similarity=0.310  Sum_probs=49.5

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Ceec---C-------ccccccEEEeec---CeEEEeecCCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLL---E-------PYQTKDIVVMQN---GSLLFTRVNQNH  123 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~---~-------~~~~~~~~~~~~---~~l~i~~~~~~d  123 (460)
                      ++..|....+.+|++|+|.|........ .+.||+-  +...   .       .....++....+   ..|.|.+++.+|
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~-~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~D   82 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINS-YLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYED   82 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCC-ccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcC
Confidence            4456777888999999999988665443 5899972  2110   0       011123322222   369999999999


Q ss_pred             CeEEEEEEEc
Q psy535          124 QGRYTCTPYN  133 (460)
Q Consensus       124 ~G~y~C~~~~  133 (460)
                      +|.|.|....
T Consensus        83 sa~YyCa~~~   92 (107)
T d1d5il1          83 MGIYYCLQYD   92 (107)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEeeecc
Confidence            9999997654

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.17  E-value=4e-06  Score=58.99  Aligned_cols=77  Identities=14%  Similarity=0.146  Sum_probs=49.4

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC-----------ccccccEEEeec-----CeEEEeecC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE-----------PYQTKDIVVMQN-----GSLLFTRVN  120 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~-----------~~~~~~~~~~~~-----~~l~i~~~~  120 (460)
                      ++..|....+.+|++|+|.|..........+.||+-  +....           .....+.....+     ..|.|.+++
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   81 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence            345667788899999999998765433335889982  21110           001112222211     249999999


Q ss_pred             CCCCeEEEEEEEcCC
Q psy535          121 QNHQGRYTCTPYNAH  135 (460)
Q Consensus       121 ~~d~G~y~C~~~~~~  135 (460)
                      .+|+|.|.|.+....
T Consensus        82 ~~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          82 IEDSAVYFCAMRGDY   96 (115)
T ss_dssp             GGGCEEEEEEEECCC
T ss_pred             ccccccccceeecCC
Confidence            999999999987543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.17  E-value=1.1e-05  Score=56.82  Aligned_cols=76  Identities=14%  Similarity=0.288  Sum_probs=51.5

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC---------------ccccccEEEeec----CeEEEe
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE---------------PYQTKDIVVMQN----GSLLFT  117 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~---------------~~~~~~~~~~~~----~~l~i~  117 (460)
                      +...|....+.+|++++|.|...+.... .+.|||  .|+.+.               .....++.....    ..|.|.
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~   82 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIH-TMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVT   82 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCS-EEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEEC
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCccc-EEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccc
Confidence            4566777888999999999998665443 699998  222110               011223333222    259999


Q ss_pred             ecCCCCCeEEEEEEEcCC
Q psy535          118 RVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus       118 ~~~~~d~G~y~C~~~~~~  135 (460)
                      +++.+|+|.|.|.+....
T Consensus        83 ~~~~~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          83 SAHPEDSGFYVCSALAGS  100 (118)
T ss_dssp             SCCGGGCEEEEEEEECSS
T ss_pred             ccccccCceEEEEEecCC
Confidence            999999999999986543

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=6.4e-06  Score=56.45  Aligned_cols=81  Identities=14%  Similarity=0.189  Sum_probs=56.0

Q ss_pred             CCCCCcee-eeeecceEEEEeecCCCCCCCceeeEEEEEEecCCCCeeeee--------ccCCCCceEEEccCccCccEE
Q psy535          246 PHAPYNIT-GVATEFSVTLEWLPGYSGGPDLKQNYVIWYREQGNKDWLPIP--------VTPPGSTQITINRLTPATTYE  316 (460)
Q Consensus       246 p~~p~~~~-~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~l~~~~~~~  316 (460)
                      |.++.++. ......++.|+|.++.   . .+..|.+.++......+....        ........+.|.+|.+++.|.
T Consensus         4 Pp~~~~l~v~~~t~~sv~v~W~pp~---~-~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~   79 (101)
T d2cuia1           4 RPRLSQLSVTDVTTSSLRLNWEAPP---G-AFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYS   79 (101)
T ss_dssp             CCCCCCCEEESCCSSCEEEECCCCT---T-SCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCEEE
T ss_pred             ccCCCCcEEEEECCCEEEEEEEecc---c-cccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcCCEEE
Confidence            44555555 3556779999998753   2 236889988776533221111        112256789999999999999


Q ss_pred             EEEEEEcCCCCCCC
Q psy535          317 FQVVGKNELGDGML  330 (460)
Q Consensus       317 ~~~~a~n~~G~~~~  330 (460)
                      |++.|.|..|.+..
T Consensus        80 ~~V~a~~~~g~g~~   93 (101)
T d2cuia1          80 LTLYGLRGPHKADS   93 (101)
T ss_dssp             EEEEEECSSSEEEE
T ss_pred             EEEEEEeCCcEeCC
Confidence            99999999998754

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.16  E-value=6.4e-06  Score=57.05  Aligned_cols=74  Identities=14%  Similarity=0.318  Sum_probs=49.6

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Cee---c-------CccccccEEEeecC---eEEEeecCCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRL---L-------EPYQTKDIVVMQNG---SLLFTRVNQNH  123 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~-------~~~~~~~~~~~~~~---~l~i~~~~~~d  123 (460)
                      ++..|....+.+|++++|.|...+.... .+.||+-  +..   +       ......++....++   .|.|.+++.+|
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~D   84 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIK-YLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPED   84 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCC-cceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCc
Confidence            3456777889999999999998765333 5899982  111   0       00112233332222   59999999999


Q ss_pred             CeEEEEEEEc
Q psy535          124 QGRYTCTPYN  133 (460)
Q Consensus       124 ~G~y~C~~~~  133 (460)
                      +|.|.|.+..
T Consensus        85 sa~YyCA~~~   94 (109)
T d1bwwa_          85 IATYYCQQYQ   94 (109)
T ss_dssp             CEEEEEEECS
T ss_pred             CceEEEeecC
Confidence            9999998754

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.16  E-value=1.1e-06  Score=61.25  Aligned_cols=72  Identities=11%  Similarity=0.269  Sum_probs=45.8

Q ss_pred             ceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC---c-------cccccEEEeec---CeEEEeecCCCCCeEE
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE---P-------YQTKDIVVMQN---GSLLFTRVNQNHQGRY  127 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~---~-------~~~~~~~~~~~---~~l~i~~~~~~d~G~y  127 (460)
                      |....+.+|++++|.|..........+.||+  .|....   -       ....+.....+   ..|.|.+++.+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            4467788999999999976543333589998  222110   0       00111111111   2599999999999999


Q ss_pred             EEEEEcC
Q psy535          128 TCTPYNA  134 (460)
Q Consensus       128 ~C~~~~~  134 (460)
                      .|.+...
T Consensus        85 yCa~~~~   91 (110)
T d2esvd1          85 YCIVVRS   91 (110)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCC
Confidence            9987643

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.15  E-value=3.4e-06  Score=59.18  Aligned_cols=75  Identities=15%  Similarity=0.183  Sum_probs=49.7

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC----------ccccccEEEee-----cCeEEEeecCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE----------PYQTKDIVVMQ-----NGSLLFTRVNQ  121 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~----------~~~~~~~~~~~-----~~~l~i~~~~~  121 (460)
                      +...|....+.+|++++|.|........ .+.|||.  +....          .....+.....     ...|.|.++++
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~-~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSP-FLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQL   82 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSC-CEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcC-CeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccc
Confidence            3456667778899999999998766544 6999982  21110          00111222211     12499999999


Q ss_pred             CCCeEEEEEEEcC
Q psy535          122 NHQGRYTCTPYNA  134 (460)
Q Consensus       122 ~d~G~y~C~~~~~  134 (460)
                      +|+|.|.|.+...
T Consensus        83 ~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          83 SDSALYYCALFLA   95 (115)
T ss_dssp             GGCEEEEEEEEEC
T ss_pred             ccCccceEEEEcC
Confidence            9999999987654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.15  E-value=5.6e-06  Score=57.01  Aligned_cols=70  Identities=13%  Similarity=0.166  Sum_probs=46.6

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Ce-e--cC-------ccccccEEEeec---CeEEEeecCCCCCeE
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KR-L--LE-------PYQTKDIVVMQN---GSLLFTRVNQNHQGR  126 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~-~--~~-------~~~~~~~~~~~~---~~l~i~~~~~~d~G~  126 (460)
                      +|....+.+|++++|.|...+... ..+.||+-  |. +  +.       .....++....+   ..|.|.+++.+|+|.
T Consensus         6 Qp~s~~~~~G~svtL~C~~s~~~~-~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1lk3l1           6 QPPALTVSPGEKLTISCKASESVT-SRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAI   84 (106)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCT-TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eCCeEEECCCCCEEEEEEeCCCCC-ccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCC
Confidence            344677889999999999876443 36999972  21 1  10       011223333332   259999999999999


Q ss_pred             EEEEEE
Q psy535          127 YTCTPY  132 (460)
Q Consensus       127 y~C~~~  132 (460)
                      |.|.+.
T Consensus        85 YyCa~~   90 (106)
T d1lk3l1          85 YFCQQS   90 (106)
T ss_dssp             EEEEEC
T ss_pred             cccccc
Confidence            999754

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.14  E-value=6.8e-06  Score=56.37  Aligned_cols=72  Identities=13%  Similarity=0.222  Sum_probs=47.1

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Ceec----------CccccccEEEeec---CeEEEeecCCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLL----------EPYQTKDIVVMQN---GSLLFTRVNQNH  123 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~----------~~~~~~~~~~~~~---~~l~i~~~~~~d  123 (460)
                      ++..|....+.+|++++|.|......  ..+.||+-  +...          ......+......   ..|.|.+++.+|
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~~~--~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D   80 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASSSV--NYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETED   80 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESSCC--SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCC--CccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCccc
Confidence            34667888899999999999875432  25899982  1110          0001122222221   259999999999


Q ss_pred             CeEEEEEEE
Q psy535          124 QGRYTCTPY  132 (460)
Q Consensus       124 ~G~y~C~~~  132 (460)
                      +|.|.|.+.
T Consensus        81 sa~YyCa~~   89 (104)
T d1yqvl1          81 AATYYCQQW   89 (104)
T ss_dssp             CEEEEEEEC
T ss_pred             CCeEEEEec
Confidence            999999764

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.14  E-value=3.3e-06  Score=58.99  Aligned_cols=72  Identities=13%  Similarity=0.224  Sum_probs=47.2

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC----------ccccccEEEeecC---eEEEeecCCCCCeE
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE----------PYQTKDIVVMQNG---SLLFTRVNQNHQGR  126 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~----------~~~~~~~~~~~~~---~l~i~~~~~~d~G~  126 (460)
                      .|....+.+|++|+|.|...+......+.|||  .|..+.          .....+.....+.   .|.|.+++.+|+|.
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   83 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAV   83 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccccccee
Confidence            56667788999999999986544333589998  222211          0011122222222   49999999999999


Q ss_pred             EEEEEEc
Q psy535          127 YTCTPYN  133 (460)
Q Consensus       127 y~C~~~~  133 (460)
                      |.|.+..
T Consensus        84 YyCa~~~   90 (112)
T d1kgcd1          84 YYCILPL   90 (112)
T ss_dssp             EEEECCC
T ss_pred             EeeeEec
Confidence            9998754

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.14  E-value=3.7e-06  Score=59.10  Aligned_cols=73  Identities=14%  Similarity=0.086  Sum_probs=47.0

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCee---cCc---c-------ccccEEEee---cCeEEEeecCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRL---LEP---Y-------QTKDIVVMQ---NGSLLFTRVNQ  121 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~---~~~---~-------~~~~~~~~~---~~~l~i~~~~~  121 (460)
                      ...|....+.+|++++|.|........ .+.||+  .+..   +..   .       ...+.....   ...|.|.+++.
T Consensus         4 ~Q~~~~v~v~~G~svtl~C~~~~~~~~-~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1i9ea_           4 TQPDARVTVSEGASLQLRCKYSYSATP-YLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW   82 (115)
T ss_dssp             ECCCSEEEEETTSCEEECCEEECSSCC-EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred             EcCCCeEEECCCCCEEEEEEEcCCCCC-CEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence            445666788899999999998764433 689997  2221   100   0       000111111   12599999999


Q ss_pred             CCCeEEEEEEEc
Q psy535          122 NHQGRYTCTPYN  133 (460)
Q Consensus       122 ~d~G~y~C~~~~  133 (460)
                      +|+|.|.|.+..
T Consensus        83 ~Dsg~YyCa~~~   94 (115)
T d1i9ea_          83 SDSAVYFCAVSG   94 (115)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cccceecccccC
Confidence            999999998764

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.13  E-value=1.7e-06  Score=59.79  Aligned_cols=73  Identities=12%  Similarity=0.218  Sum_probs=47.8

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Ceec----------CccccccEEEee---cCeEEEeecCCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLL----------EPYQTKDIVVMQ---NGSLLFTRVNQNH  123 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~----------~~~~~~~~~~~~---~~~l~i~~~~~~d  123 (460)
                      ++..|....+.+|++|+|.|........ .+.||+-  |...          ......++....   ...|.|.+++.+|
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D   82 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINN-FLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPED   82 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCC-CeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecC
Confidence            3456777888899999999997665443 5999972  2110          000111111111   1269999999999


Q ss_pred             CeEEEEEEE
Q psy535          124 QGRYTCTPY  132 (460)
Q Consensus       124 ~G~y~C~~~  132 (460)
                      +|.|.|.+.
T Consensus        83 sa~YyCa~~   91 (107)
T d3cx5k1          83 IATYFCQHH   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             CCcEEeeeC
Confidence            999999764

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.09  E-value=7.4e-06  Score=57.31  Aligned_cols=74  Identities=15%  Similarity=0.179  Sum_probs=48.4

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC------c----cccccEEEeec-----CeEEEeecCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE------P----YQTKDIVVMQN-----GSLLFTRVNQ  121 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~------~----~~~~~~~~~~~-----~~l~i~~~~~  121 (460)
                      +...|....+.+|++++|.|...+..  ..+.||+  .|....      .    ....+.....+     ..|.|.+++.
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~~~--~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   80 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSSVF--SSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQP   80 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSCC--SCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCG
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCCC--ceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCc
Confidence            34567778899999999999976543  2699998  222100      0    00111111111     2599999999


Q ss_pred             CCCeEEEEEEEcC
Q psy535          122 NHQGRYTCTPYNA  134 (460)
Q Consensus       122 ~d~G~y~C~~~~~  134 (460)
                      +|+|.|.|.+...
T Consensus        81 ~Dsa~YyCa~~~~   93 (115)
T d1ogad1          81 GDTGLYLCAGAGS   93 (115)
T ss_dssp             GGCEEEEEEEECT
T ss_pred             cceeeEcccccCC
Confidence            9999999987643

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.09  E-value=6.7e-06  Score=55.10  Aligned_cols=89  Identities=12%  Similarity=0.259  Sum_probs=55.5

Q ss_pred             CeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEE--eecCeEEEeecCCCCCeEEEEEEEcC
Q psy535           57 AKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV--MQNGSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        57 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      |.+...|. ..+..|.+|+|.|.....  ...+.++|+|.............  .....+.|.++...|+|.|+|.-...
T Consensus         3 PsLsa~P~-~~V~~G~~VTl~C~~~~~--~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           3 PSLLAHPG-PLVKSEETVILQCWSDVM--FEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEEESSC--CSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CEEEeeCC-CccCCCCcEEEEECCCCC--CCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            55555663 556789999999997543  33689999775421100000000  01235999999999999999987543


Q ss_pred             C---CCcceeeEEEEEe
Q psy535          135 H---GTQGSSGQMEVLV  148 (460)
Q Consensus       135 ~---g~~~~~~~~~v~v  148 (460)
                      .   ...+.+..++|.|
T Consensus        80 ~~p~~wS~pSdpLeL~V   96 (96)
T d1nkra1          80 HSPYQVSAPSDPLDIVI   96 (96)
T ss_dssp             TBTTCCCCCCCCEEEEE
T ss_pred             CCCCcccCCCCCEEEEC
Confidence            2   3344566666654

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=4.2e-06  Score=59.59  Aligned_cols=72  Identities=10%  Similarity=0.084  Sum_probs=46.8

Q ss_pred             ceeeeecceeeEEEEEEEecCC------CCCeEEEeeCCee---------------cCccccccEEEeec-----CeEEE
Q psy535           63 PTVQYLPFRLQGVVQCHIKANP------TFQYVTWTKDKRL---------------LEPYQTKDIVVMQN-----GSLLF  116 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~------~~~~v~W~~~~~~---------------~~~~~~~~~~~~~~-----~~l~i  116 (460)
                      |....+.+|++|+|.|......      ....+.|++....               .......+.....+     .+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            4567788999999999874211      2235789874321               11111234444332     36999


Q ss_pred             eecCCCCCeEEEEEEEcC
Q psy535          117 TRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus       117 ~~~~~~d~G~y~C~~~~~  134 (460)
                      .+++.+|+|.|.|.+...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999999653

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.08  E-value=4.5e-06  Score=58.65  Aligned_cols=75  Identities=12%  Similarity=0.125  Sum_probs=49.2

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC------c-----cccccEEEee-----cCeEEEeecC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE------P-----YQTKDIVVMQ-----NGSLLFTRVN  120 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~------~-----~~~~~~~~~~-----~~~l~i~~~~  120 (460)
                      ++..|....+.+|++++|.|........ .+.||+  .|....      .     ....+.....     .-.|.|.+++
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~-~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPP-YLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAH   81 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCC-EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCC
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCce-eEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccc
Confidence            3456777888999999999998765433 699998  222110      0     0011111111     1149999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy535          121 QNHQGRYTCTPYNA  134 (460)
Q Consensus       121 ~~d~G~y~C~~~~~  134 (460)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          82 MSDAAEYFCAVSES   95 (115)
T ss_dssp             GGGCEEEEEEEESS
T ss_pred             ccCCccceeeecCC
Confidence            99999999998754

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=8.7e-06  Score=56.75  Aligned_cols=69  Identities=12%  Similarity=0.230  Sum_probs=41.5

Q ss_pred             eeecceeeEEEEEEEecCCCC--CeEE--EeeCCeec--------------CccccccEEE-eecCeEEEeecCCCCCeE
Q psy535           66 QYLPFRLQGVVQCHIKANPTF--QYVT--WTKDKRLL--------------EPYQTKDIVV-MQNGSLLFTRVNQNHQGR  126 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~~--~~v~--W~~~~~~~--------------~~~~~~~~~~-~~~~~l~i~~~~~~d~G~  126 (460)
                      +....|++++|.|.....+..  ..+.  |.++....              .+....+... ..+.+|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            446679999999998543321  1234  44432211              0111112222 234579999999999999


Q ss_pred             EEEEEEcC
Q psy535          127 YTCTPYNA  134 (460)
Q Consensus       127 y~C~~~~~  134 (460)
                      |.|.+...
T Consensus        84 Y~C~V~~~   91 (110)
T d1ncna_          84 YQCIIHHK   91 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99998644

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.08  E-value=2.6e-06  Score=59.46  Aligned_cols=73  Identities=12%  Similarity=0.204  Sum_probs=47.2

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecCc----------cccccEEEeec-----CeEEEeecCCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLEP----------YQTKDIVVMQN-----GSLLFTRVNQN  122 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~~----------~~~~~~~~~~~-----~~l~i~~~~~~  122 (460)
                      ...|....+.+|++++|.|....... ..+.||+-  |....-          ....+......     ..|.|.+++.+
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~-~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENSAF-DYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG   81 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCTTE-EEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred             EecCCEEEEcCCCCEEEEEEecCCCC-cEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence            34566777889999999999865433 36999972  221100          00111111111     25999999999


Q ss_pred             CCeEEEEEEEc
Q psy535          123 HQGRYTCTPYN  133 (460)
Q Consensus       123 d~G~y~C~~~~  133 (460)
                      |+|.|.|.+..
T Consensus        82 Dsa~YyCa~~~   92 (110)
T d1u3ha1          82 DSATYFCAASA   92 (110)
T ss_dssp             SCSEEEECCEE
T ss_pred             CceeEeeeecC
Confidence            99999998763

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.08  E-value=1.1e-05  Score=56.33  Aligned_cols=72  Identities=15%  Similarity=0.142  Sum_probs=48.3

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC-------------ccccccEEEeec----CeEEEeecC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE-------------PYQTKDIVVMQN----GSLLFTRVN  120 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~-------------~~~~~~~~~~~~----~~l~i~~~~  120 (460)
                      +..|....+.+|++++|.|...+..  ..+.||+  .+....             .....+......    ..|.|.+++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~~~--~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (113)
T d2ntsp1           3 TQTPRYLIKTRGQQVTLSCSPISGH--RSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLE   80 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEECSTTC--CEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred             EeCCCeEEECCCCCEEEEEEECCCC--CEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCC
Confidence            4567778889999999999875543  3699998  222110             011122222221    259999999


Q ss_pred             CCCCeEEEEEEEc
Q psy535          121 QNHQGRYTCTPYN  133 (460)
Q Consensus       121 ~~d~G~y~C~~~~  133 (460)
                      .+|+|.|.|.+..
T Consensus        81 ~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          81 LGDSALYLCASSL   93 (113)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cccceeeeeeeeC
Confidence            9999999998764

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.08  E-value=1.5e-05  Score=55.34  Aligned_cols=74  Identities=15%  Similarity=0.175  Sum_probs=48.5

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC-------------c-cccccEEEee---cCeEEEee
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE-------------P-YQTKDIVVMQ---NGSLLFTR  118 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~-------------~-~~~~~~~~~~---~~~l~i~~  118 (460)
                      .+...|....+.+|++++|.|...+. . ..+.|||  .|....             . ..........   ...|.|.+
T Consensus         3 ~V~Q~P~~~~~~~G~~vtl~C~~s~~-~-~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   80 (110)
T d2aq2a1           3 AVTQSPRNKVAVTGEKVTLSCQQTNN-H-NNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILES   80 (110)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESSC-C-SEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESS
T ss_pred             CEEEeCCeEEEcCCCCEEEEEEECCC-c-CcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECC
Confidence            34567888889999999999987653 2 3699998  221110             0 0011111111   13589999


Q ss_pred             cCCCCCeEEEEEEEc
Q psy535          119 VNQNHQGRYTCTPYN  133 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~  133 (460)
                      ++.+|+|.|.|.+..
T Consensus        81 ~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          81 ATPSQTSVYFCASGG   95 (110)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCHhhCEEEEEeeCC
Confidence            999999999998764

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.08  E-value=8.9e-06  Score=56.76  Aligned_cols=75  Identities=15%  Similarity=0.298  Sum_probs=48.4

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC-c---cc----cccE-EEe-----ecCeEEEeecCCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE-P---YQ----TKDI-VVM-----QNGSLLFTRVNQN  122 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~-~---~~----~~~~-~~~-----~~~~l~i~~~~~~  122 (460)
                      +...|....+.+|++++|.|......  ..+.||+  .+.... -   ..    .... ...     ....|.|.+++.+
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~~~--~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTTTM--RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE   81 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCC--SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEecCC--ccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHh
Confidence            44567788889999999999986542  3699998  221110 0   00    0000 000     0125999999999


Q ss_pred             CCeEEEEEEEcCC
Q psy535          123 HQGRYTCTPYNAH  135 (460)
Q Consensus       123 d~G~y~C~~~~~~  135 (460)
                      |+|.|.|.+....
T Consensus        82 Dsa~YyCa~~~~~   94 (113)
T d1h5ba_          82 DSGTYFCAAEASS   94 (113)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             HCEEEEEEecCCC
Confidence            9999999887543

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1e-05  Score=54.98  Aligned_cols=76  Identities=13%  Similarity=0.123  Sum_probs=52.6

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccE-----EEecceEEEccccceeceEEEEE
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV-----KIVGGNITIEGLRRVDFGYYECV  225 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~~~g~y~C~  225 (460)
                      .|.+...|..  .+..|++|+|.|..    ..+...+.|++++.........     ......+.|.++...|+|.|+|.
T Consensus         7 kPsLsa~P~~--~V~~G~~VTL~C~~----~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~   80 (99)
T d1ucta1           7 MPFISAKSSP--VIPLDGSVKIQCQA----IREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQ   80 (99)
T ss_dssp             CCCEEESSCS--EEETTCCEEEEECC----CTTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEecCCC--ceeCCCeEEEEEcC----CCCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEE
Confidence            4677777765  47789999999985    4456688888854322111111     11234699999999999999999


Q ss_pred             Eecccce
Q psy535          226 VSNEVAT  232 (460)
Q Consensus       226 a~n~~g~  232 (460)
                      ..+....
T Consensus        81 y~~~~~~   87 (99)
T d1ucta1          81 YRIGHYR   87 (99)
T ss_dssp             EEETTTE
T ss_pred             EECCCcc
Confidence            8876653

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.1e-05  Score=54.11  Aligned_cols=73  Identities=14%  Similarity=0.235  Sum_probs=50.1

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEEecceEEEccccceeceEEEEEEec
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKIVGGNITIEGLRRVDFGYYECVVSN  228 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  228 (460)
                      .|.+...|..  .+..|++|+|.|..   .......+.|++++...............+.|.++...|+|.|+|....
T Consensus         5 kP~Lsa~P~~--~V~~G~~VTL~C~~---~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   77 (96)
T d1ucta2           5 KPFLSADRGL--VLMPGENISLTCSS---AHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWY   77 (96)
T ss_dssp             CCEEEESSCS--EECTTCCCEEEEEC---SSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred             CCEEEEeCCC--ccCCCCeEEEEEeC---CCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEc
Confidence            5677777765  57899999999985   2334457889885543222111111234689999999999999998754

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.05  E-value=1.4e-05  Score=55.55  Aligned_cols=74  Identities=15%  Similarity=0.163  Sum_probs=48.4

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC----------ccccccEEEeec-----CeEEEeecCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE----------PYQTKDIVVMQN-----GSLLFTRVNQ  121 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~----------~~~~~~~~~~~~-----~~l~i~~~~~  121 (460)
                      +...|....+.+|++++|.|........ .+.||+  .|....          .....+.....+     ..|.|.+++.
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFD-YFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQP   81 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCC-EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCC-eEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcc
Confidence            3445667778899999999987665443 689998  222110          001112222111     2599999999


Q ss_pred             CCCeEEEEEEEc
Q psy535          122 NHQGRYTCTPYN  133 (460)
Q Consensus       122 ~d~G~y~C~~~~  133 (460)
                      +|+|.|.|.+..
T Consensus        82 ~Dsa~YyCa~~~   93 (111)
T d1bd2d1          82 GDSAVYFCAAME   93 (111)
T ss_dssp             GGCEEEEEEEES
T ss_pred             cccEEEEeeccC
Confidence            999999998764

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.04  E-value=3.4e-05  Score=51.85  Aligned_cols=79  Identities=14%  Similarity=0.257  Sum_probs=45.7

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccc-cccEEEeecCeE---EEeecCCCCCeEEEEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQ-TKDIVVMQNGSL---LFTRVNQNHQGRYTCT  130 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~l---~i~~~~~~d~G~y~C~  130 (460)
                      +|.+.+.+.. ....++..+|.|.+.+. |+...|+|++||..+.... ........++++   ....+...+.+.|+|.
T Consensus         4 ~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~   82 (98)
T d1d5mb1           4 YPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQ   82 (98)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEE
T ss_pred             CCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEE
Confidence            4555443332 12345677899999995 5556899999998875321 112222334442   2345667788899999


Q ss_pred             EEcCC
Q psy535          131 PYNAH  135 (460)
Q Consensus       131 ~~~~~  135 (460)
                      +....
T Consensus        83 V~H~s   87 (98)
T d1d5mb1          83 VEHPS   87 (98)
T ss_dssp             EECTT
T ss_pred             EEECC
Confidence            98754

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.3e-05  Score=53.70  Aligned_cols=78  Identities=21%  Similarity=0.305  Sum_probs=48.7

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCe---EEEeecCCCCCeEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGS---LLFTRVNQNHQGRYTCT  130 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---l~i~~~~~~d~G~y~C~  130 (460)
                      .||.+.+....   ..|+.++|.|.+.|. |....|+|++||..+............+++   .....+...+...|+|.
T Consensus         2 ~PP~V~v~~~~---~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~   78 (94)
T d1t7va1           2 DPPSVVVTSHQ---APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCH   78 (94)
T ss_dssp             BCCEEEEEEEE---CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEE
T ss_pred             cCCEeEEeccC---CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEE
Confidence            46666553322   236689999999995 555689999999887532222222222333   22334456677789999


Q ss_pred             EEcCC
Q psy535          131 PYNAH  135 (460)
Q Consensus       131 ~~~~~  135 (460)
                      +....
T Consensus        79 V~H~s   83 (94)
T d1t7va1          79 VQHSS   83 (94)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            98754

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.04  E-value=1.5e-05  Score=55.49  Aligned_cols=74  Identities=14%  Similarity=0.201  Sum_probs=47.3

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCC-----CCCeEEEeeC--Ceec----------CccccccEEEeec---CeEEEee
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANP-----TFQYVTWTKD--KRLL----------EPYQTKDIVVMQN---GSLLFTR  118 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~-----~~~~v~W~~~--~~~~----------~~~~~~~~~~~~~---~~l~i~~  118 (460)
                      ++..|....+.+|++++|.|...+..     ....+.||+.  |...          ......+.....+   ..|.|.+
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~   83 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITS   83 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecc
Confidence            34567778889999999999875421     1124899982  2211          0001122222222   2599999


Q ss_pred             cCCCCCeEEEEEEE
Q psy535          119 VNQNHQGRYTCTPY  132 (460)
Q Consensus       119 ~~~~d~G~y~C~~~  132 (460)
                      ++.+|+|.|.|.+.
T Consensus        84 l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          84 VQAEDLAVYYCKQS   97 (113)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cccCCCeEEEeccc
Confidence            99999999999864

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.04  E-value=2.9e-05  Score=52.07  Aligned_cols=80  Identities=18%  Similarity=0.220  Sum_probs=49.8

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccc-cccEEEeecCeEEE---eecCCCCCeEEEEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQ-TKDIVVMQNGSLLF---TRVNQNHQGRYTCT  130 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~l~i---~~~~~~d~G~y~C~  130 (460)
                      ||.+.+.+.. ....++.++|.|.+.+. |....|+|++||..+.... ........++++.+   ..+..++...|+|.
T Consensus         3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~   81 (98)
T d1hdmb1           3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCV   81 (98)
T ss_dssp             CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEE
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEE
Confidence            5555544322 23456789999999996 5567899999998874321 22223333444322   23455667789999


Q ss_pred             EEcCCC
Q psy535          131 PYNAHG  136 (460)
Q Consensus       131 ~~~~~g  136 (460)
                      +.....
T Consensus        82 V~H~sl   87 (98)
T d1hdmb1          82 VEHIGA   87 (98)
T ss_dssp             EECTTS
T ss_pred             EEeCCC
Confidence            987543

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.5e-05  Score=53.72  Aligned_cols=76  Identities=13%  Similarity=0.178  Sum_probs=46.4

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEE---eecCeEEEeecCCCCCeEEEEEEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVV---MQNGSLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~  132 (460)
                      .|.+...|. ..+..|++|+|.|....  ....+.++|+|.............   .....+.|.++...|+|.|+|.-.
T Consensus         4 kPsLsa~P~-~~v~~G~~VTL~C~~~~--~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   80 (98)
T d1ugna2           4 KPTLSAQPS-PVVNSGGNVTLQCDSQV--AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAY   80 (98)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECSS--CCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEE
T ss_pred             CCEEEeeCC-CccCCCCcEEEEeCCCC--CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeE
Confidence            355666674 45788999999998643  234688889877532111000000   011259999999999999999875


Q ss_pred             cC
Q psy535          133 NA  134 (460)
Q Consensus       133 ~~  134 (460)
                      ..
T Consensus        81 ~~   82 (98)
T d1ugna2          81 DS   82 (98)
T ss_dssp             CT
T ss_pred             cC
Confidence            44

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=8e-06  Score=57.14  Aligned_cols=71  Identities=18%  Similarity=0.283  Sum_probs=44.9

Q ss_pred             eeeeecceeeEEEEEEEecC-CCCCeEEEeeC--Cee---c----------CccccccEEEeec---C--eEEEeecCCC
Q psy535           64 TVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKD--KRL---L----------EPYQTKDIVVMQN---G--SLLFTRVNQN  122 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~--~~~---~----------~~~~~~~~~~~~~---~--~l~i~~~~~~  122 (460)
                      ....+.+|++++|.|...+. .....+.|+|-  +..   +          ......++.+..+   +  +|.|.+++.+
T Consensus         7 ~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~   86 (113)
T d1smoa_           7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVE   86 (113)
T ss_dssp             EEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcc
Confidence            34567789999999987542 12235889982  211   1          0001124433322   2  4999999999


Q ss_pred             CCeEEEEEEEcC
Q psy535          123 HQGRYTCTPYNA  134 (460)
Q Consensus       123 d~G~y~C~~~~~  134 (460)
                      |+|.|.|.+...
T Consensus        87 Dsg~Y~Cav~~~   98 (113)
T d1smoa_          87 DSGLYQCVIYQP   98 (113)
T ss_dssp             GCEEEEEEECCT
T ss_pred             cCceEEEEEECC
Confidence            999999988643

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.02  E-value=1.3e-05  Score=54.29  Aligned_cols=80  Identities=14%  Similarity=0.181  Sum_probs=48.1

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccc-cccEEEeecCeEEE---eecCCCCCeEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQ-TKDIVVMQNGSLLF---TRVNQNHQGRYTC  129 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~l~i---~~~~~~d~G~y~C  129 (460)
                      .+|.+.+.+... +..|+.++|.|.+.|. |....|+|++||..+.... ........++++.+   ..+...+...|+|
T Consensus         4 v~P~V~v~~~~~-~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC   82 (101)
T d1fnga1           4 VAPEVTVLSRSP-VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDC   82 (101)
T ss_dssp             BCCEEEEEESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECCCTTCCEEE
T ss_pred             cCCeEEEeCCCc-ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCCCCCEEEE
Confidence            456655543222 3456778999999996 5566899999998875321 11122223333222   1234456678999


Q ss_pred             EEEcCC
Q psy535          130 TPYNAH  135 (460)
Q Consensus       130 ~~~~~~  135 (460)
                      .+....
T Consensus        83 ~V~H~s   88 (101)
T d1fnga1          83 EVDHWG   88 (101)
T ss_dssp             EEECTT
T ss_pred             EEEECC
Confidence            998753

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=1.4e-05  Score=49.60  Aligned_cols=74  Identities=18%  Similarity=0.240  Sum_probs=47.9

Q ss_pred             eeeecceeeEEEEEEEecCCCCCeEEEee-CCeecCcccc--ccEEEee-cC-----eEEEeecCCCCCeEEEEEEEcCC
Q psy535           65 VQYLPFRLQGVVQCHIKANPTFQYVTWTK-DKRLLEPYQT--KDIVVMQ-NG-----SLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~--~~~~~~~-~~-----~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      ...+..|+...|.|.+.---..+.++|.| +|..-.+...  .+...-. +.     .|.+..+.++|.|.|+|.|.-..
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s   91 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence            34577899999999996544444799998 4432222111  1111111 11     38889999999999999997655


Q ss_pred             CCc
Q psy535          136 GTQ  138 (460)
Q Consensus       136 g~~  138 (460)
                      +..
T Consensus        92 ~vi   94 (104)
T d1xaua_          92 QVI   94 (104)
T ss_dssp             EEE
T ss_pred             hhe
Confidence            544

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.01  E-value=2.6e-06  Score=58.42  Aligned_cols=70  Identities=16%  Similarity=0.304  Sum_probs=45.1

Q ss_pred             ceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC----------ccccccEEEeec---CeEEEeecCCCCCeEE
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE----------PYQTKDIVVMQN---GSLLFTRVNQNHQGRY  127 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~----------~~~~~~~~~~~~---~~l~i~~~~~~d~G~y  127 (460)
                      |....+.+|++|+|.|........ .+.||+-  |....          .....+.....+   ..|.|.+++.+|+|.|
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~-~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   83 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQ-YAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADY   83 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGS-CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCC-CEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceE
Confidence            446778889999999987654333 5899982  21110          001112222111   2599999999999999


Q ss_pred             EEEEEc
Q psy535          128 TCTPYN  133 (460)
Q Consensus       128 ~C~~~~  133 (460)
                      .|.+.+
T Consensus        84 yCA~~~   89 (103)
T d8faba1          84 YCQAWD   89 (103)
T ss_dssp             EEEEEE
T ss_pred             EeeecC
Confidence            998764

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.00  E-value=1.7e-05  Score=55.22  Aligned_cols=72  Identities=11%  Similarity=0.189  Sum_probs=47.6

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Ceec--------------CccccccEEEeec----CeEEEeec
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLL--------------EPYQTKDIVVMQN----GSLLFTRV  119 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~--------------~~~~~~~~~~~~~----~~l~i~~~  119 (460)
                      +..|....+.+|++++|.|..... . ..+.||+-  ++..              ......++.....    ..|.|.++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~~-~-~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPISG-H-VSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRT   80 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCTT-C-CEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSC
T ss_pred             EECCCeEEECCCCCEEEEEEECCC-C-CEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCC
Confidence            456777888999999999986543 2 36999981  2110              0011222222211    25999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy535          120 NQNHQGRYTCTPYN  133 (460)
Q Consensus       120 ~~~d~G~y~C~~~~  133 (460)
                      +++|+|.|.|.+..
T Consensus        81 ~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          81 QQEDSAVYLCASSL   94 (112)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             CcCCCEEEEEeeeC
Confidence            99999999998864

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.00  E-value=3.2e-05  Score=53.54  Aligned_cols=74  Identities=15%  Similarity=0.068  Sum_probs=48.6

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC----------ccccccEEEee-----cCeEEEeecCC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE----------PYQTKDIVVMQ-----NGSLLFTRVNQ  121 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~----------~~~~~~~~~~~-----~~~l~i~~~~~  121 (460)
                      +...|....+.+|++++|.|........ .+.||+  .|+...          .....++....     ...|.|.+++.
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~-~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~   81 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYP-ALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQE   81 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCC-EEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCc-ceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCc
Confidence            4456777888999999999987654333 699998  222110          00111222111     12599999999


Q ss_pred             CCCeEEEEEEEc
Q psy535          122 NHQGRYTCTPYN  133 (460)
Q Consensus       122 ~d~G~y~C~~~~  133 (460)
                      +|+|.|.|.+..
T Consensus        82 ~Dsa~YyCA~~~   93 (110)
T d1ac6a_          82 SDSAVYYCALSG   93 (110)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCcccceeecC
Confidence            999999998764

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.99  E-value=2.1e-05  Score=54.13  Aligned_cols=69  Identities=13%  Similarity=0.214  Sum_probs=45.2

Q ss_pred             eeeecceeeEEEEEEEecCCCC--CeEEEee---CCeec---------CccccccEEEeec---CeEEEeecCCCCCeEE
Q psy535           65 VQYLPFRLQGVVQCHIKANPTF--QYVTWTK---DKRLL---------EPYQTKDIVVMQN---GSLLFTRVNQNHQGRY  127 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~---~~~~~---------~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y  127 (460)
                      ...+.+|++++|.|...+....  ..+.||+   +..+.         .+....++.....   ..|.|.+++.+|+|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            5678899999999998654321  2388997   22221         0111233332222   2599999999999999


Q ss_pred             EEEEEc
Q psy535          128 TCTPYN  133 (460)
Q Consensus       128 ~C~~~~  133 (460)
                      .|.+..
T Consensus        89 yCa~~~   94 (110)
T d1oaql_          89 FCALWY   94 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEccc
Confidence            998764

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.99  E-value=9e-06  Score=56.99  Aligned_cols=73  Identities=16%  Similarity=0.268  Sum_probs=48.1

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Cee---cC-------ccccccEEEeec---CeEEEeecCCCCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRL---LE-------PYQTKDIVVMQN---GSLLFTRVNQNHQ  124 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~---~~-------~~~~~~~~~~~~---~~l~i~~~~~~d~  124 (460)
                      +..|....+.+|++++|.|...+... ..+.||+-  +..   +.       .....++.....   ..|.|.+++.+|+
T Consensus         5 tQ~P~sv~~~~G~svtl~C~~s~~~~-~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   83 (119)
T d1f3rb2           5 TQSPSLLSASVGDRVTLSCKGSQNIN-NYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDV   83 (119)
T ss_dssp             CEETSEECCCTTCCEEEEEECSSCCB-TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGC
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCc-ceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCC
Confidence            45677788899999999998765433 36999982  111   10       001122222222   2599999999999


Q ss_pred             eEEEEEEEc
Q psy535          125 GRYTCTPYN  133 (460)
Q Consensus       125 G~y~C~~~~  133 (460)
                      |.|.|.+..
T Consensus        84 avYyCa~~~   92 (119)
T d1f3rb2          84 ATYFCYQYN   92 (119)
T ss_dssp             SEEEEEEES
T ss_pred             eEEEeeccC
Confidence            999997653

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.98  E-value=2.3e-05  Score=54.26  Aligned_cols=75  Identities=12%  Similarity=0.256  Sum_probs=48.3

Q ss_pred             eEEcceeeeecceeeEEEEEEEecC---CCCCeEEEeeC--Ceec----C------ccccccEEEeec---CeEEEeecC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKAN---PTFQYVTWTKD--KRLL----E------PYQTKDIVVMQN---GSLLFTRVN  120 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~---~~~~~v~W~~~--~~~~----~------~~~~~~~~~~~~---~~l~i~~~~  120 (460)
                      ++..|....+.+|++|+|.|.....   .....+.||+-  |...    .      .....++.....   ..|.|.+++
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~   83 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVE   83 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccc
Confidence            3456777888999999999987542   11224899982  2211    0      001123332222   259999999


Q ss_pred             CCCCeEEEEEEEc
Q psy535          121 QNHQGRYTCTPYN  133 (460)
Q Consensus       121 ~~d~G~y~C~~~~  133 (460)
                      .+|++.|.|.+..
T Consensus        84 ~~DsA~YyCa~~~   96 (111)
T d2gsia1          84 EEDAATYYCSHIR   96 (111)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             ccCCceEEEEECC
Confidence            9999999998654

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.6e-05  Score=53.29  Aligned_cols=66  Identities=12%  Similarity=0.147  Sum_probs=41.0

Q ss_pred             ceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCeEEEe---ecCCCCCeEEEEEEEcCCC
Q psy535           70 FRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT---RVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        70 ~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G~y~C~~~~~~g  136 (460)
                      .++.++|.|.+.|. |.+ .|+|+++|..+............++.+.+.   .+...+...|+|.+.+..-
T Consensus        15 s~~~~~L~C~~~g~~P~~-~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~~~~~~~~tC~V~h~~l   84 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEP-HLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHL   84 (95)
T ss_dssp             STTEEEEEEEEEEESSCE-EEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTC
T ss_pred             CCCEEEEEEEECcccCCC-EEEEecCCcEecccceeeEecCCCccEEEEEEEEccCCccceEEEEEEecCC
Confidence            46678999999985 655 899999998875422211111122332221   1234567899999987543

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.98  E-value=2.7e-05  Score=54.07  Aligned_cols=74  Identities=19%  Similarity=0.238  Sum_probs=48.4

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCC----CCCeEEEeeC--Ceec----------CccccccEEEeecC---eEEEeec
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANP----TFQYVTWTKD--KRLL----------EPYQTKDIVVMQNG---SLLFTRV  119 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~----~~~~v~W~~~--~~~~----------~~~~~~~~~~~~~~---~l~i~~~  119 (460)
                      ++..|....+.+|++|+|.|...+..    ....+.||+-  |...          ......++.....+   .|.|.++
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~   84 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   84 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCC
Confidence            45567788899999999999975432    1135899972  2110          01112233332222   6999999


Q ss_pred             CCCCCeEEEEEEE
Q psy535          120 NQNHQGRYTCTPY  132 (460)
Q Consensus       120 ~~~d~G~y~C~~~  132 (460)
                      +.+|+|.|.|...
T Consensus        85 ~~~DsavYyCa~~   97 (113)
T d1n4xl_          85 EAEDLGIYYCFQG   97 (113)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccCEEEEEEEC
Confidence            9999999999654

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.97  E-value=2.2e-05  Score=54.46  Aligned_cols=73  Identities=15%  Similarity=0.173  Sum_probs=46.5

Q ss_pred             EEcceeeeecceeeEEEEEEEecCC----CCCeEEEeeC--Ceec----------CccccccEEEeecC---eEEEeecC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANP----TFQYVTWTKD--KRLL----------EPYQTKDIVVMQNG---SLLFTRVN  120 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~----~~~~v~W~~~--~~~~----------~~~~~~~~~~~~~~---~l~i~~~~  120 (460)
                      +..|....+.+|++|+|.|...+..    ....+.||+.  |...          ......+......+   .|.|.+++
T Consensus         5 TQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~   84 (112)
T d1mjul1           5 TQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVE   84 (112)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCC
T ss_pred             EecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCcc
Confidence            3456677788899999999876531    1235899972  2211          01111223222222   59999999


Q ss_pred             CCCCeEEEEEEE
Q psy535          121 QNHQGRYTCTPY  132 (460)
Q Consensus       121 ~~d~G~y~C~~~  132 (460)
                      .+|++.|.|...
T Consensus        85 ~~DsAvYyCa~~   96 (112)
T d1mjul1          85 AEDVGVYYCLQH   96 (112)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             ccCCceEEEEeC
Confidence            999999999543

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.97  E-value=8.7e-06  Score=56.05  Aligned_cols=71  Identities=14%  Similarity=0.251  Sum_probs=45.9

Q ss_pred             ceeeeecceeeEEEEEEEecCCCCCeEEEeeC--Ceec----------CccccccEEEeecC---eEEEeecCCCCCeEE
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLL----------EPYQTKDIVVMQNG---SLLFTRVNQNHQGRY  127 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~----------~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y  127 (460)
                      |....+.+|++++|.|........ .+.||+-  ++..          ......+.....++   .|.|.+++.+|+|.|
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavY   85 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIGSR-SVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADY   85 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGS-CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCeEEECCCCCEEEEEEcCCCCCc-ceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEE
Confidence            445778889999999997553333 5899972  2211          00112222222222   599999999999999


Q ss_pred             EEEEEcC
Q psy535          128 TCTPYNA  134 (460)
Q Consensus       128 ~C~~~~~  134 (460)
                      .|.+...
T Consensus        86 yCA~~~~   92 (109)
T d1w72l1          86 YCQVWDS   92 (109)
T ss_dssp             EEEEEET
T ss_pred             EEEecCC
Confidence            9988653

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.97  E-value=2.2e-05  Score=54.35  Aligned_cols=74  Identities=12%  Similarity=0.249  Sum_probs=47.6

Q ss_pred             EEcceeeeecceeeEEEEEEEecCC---CCCeEEEee--CCeecC----------ccccccEEEeecC---eEEEeecCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANP---TFQYVTWTK--DKRLLE----------PYQTKDIVVMQNG---SLLFTRVNQ  121 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~---~~~~v~W~~--~~~~~~----------~~~~~~~~~~~~~---~l~i~~~~~  121 (460)
                      +..|....+.+|++|+|.|......   ....+.||+  .|....          .....+.....++   .|.|.+++.
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   84 (111)
T d1j05a_           5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA   84 (111)
T ss_dssp             EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCG
T ss_pred             EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccc
Confidence            4567777888999999999874321   122499998  222110          0011222222222   599999999


Q ss_pred             CCCeEEEEEEEc
Q psy535          122 NHQGRYTCTPYN  133 (460)
Q Consensus       122 ~d~G~y~C~~~~  133 (460)
                      +|+|.|.|.+.+
T Consensus        85 ~Dsa~YyCa~~~   96 (111)
T d1j05a_          85 DDVATYYCQQTN   96 (111)
T ss_dssp             GGCEEEEEEECS
T ss_pred             ccCccEEEeecC
Confidence            999999998754

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.95  E-value=1.7e-05  Score=55.02  Aligned_cols=72  Identities=11%  Similarity=0.216  Sum_probs=46.8

Q ss_pred             ceeeeecceeeEEEEEEEecCC-CCCeEEEeeC--Cee---c-------CccccccEEEeec---CeEEEeecCCCCCeE
Q psy535           63 PTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRL---L-------EPYQTKDIVVMQN---GSLLFTRVNQNHQGR  126 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~---~-------~~~~~~~~~~~~~---~~l~i~~~~~~d~G~  126 (460)
                      |....+.+|++++|.|...+.. ....+.||+-  +..   +       ......++....+   ..|.|.+++.+|+|.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence            4467888999999999876532 1235999972  111   0       0011223333222   269999999999999


Q ss_pred             EEEEEEcC
Q psy535          127 YTCTPYNA  134 (460)
Q Consensus       127 y~C~~~~~  134 (460)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (111)
T d1rzfl1          87 YYCGTWDS   94 (111)
T ss_dssp             EEEEEEET
T ss_pred             eEEeecCC
Confidence            99987643

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=2.5e-05  Score=51.64  Aligned_cols=77  Identities=12%  Similarity=0.078  Sum_probs=46.7

Q ss_pred             cCCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCeEEEe---ecCCCCCeEEEEE
Q psy535           55 FPAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT---RVNQNHQGRYTCT  130 (460)
Q Consensus        55 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G~y~C~  130 (460)
                      .||.+.+....  . .+..++|.|.+.|. |....|+|++||..+... ........++++.+.   .+..++...|+|+
T Consensus         2 ~PP~V~v~~~~--~-~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~-~~~~~~~~dgty~~~S~l~v~~~~~~~ytC~   77 (91)
T d3frua1           2 EPPSMRLKARP--G-NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSG-NCSTGPNGDGSFHAWSLLEVKRGDEHHYQCQ   77 (91)
T ss_dssp             BCCEEEEEEEE--C-STTEEEEEEEEEEEBSSCCEEEEEETTEECCCC-EEEEEECSSSCEEEEEEEEEETTCGGGEEEE
T ss_pred             CCCEEEEEecC--C-CCCCEEEEEEEEeEECCCCEEEEEECCEeCCcc-CccceecCCCCEeEEEEEEECCCCCCEEEEE
Confidence            35655543221  1 23468999999995 666789999999887542 222222334432221   2334567789999


Q ss_pred             EEcCC
Q psy535          131 PYNAH  135 (460)
Q Consensus       131 ~~~~~  135 (460)
                      +....
T Consensus        78 V~H~s   82 (91)
T d3frua1          78 VEHEG   82 (91)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            98653

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.95  E-value=3e-05  Score=52.50  Aligned_cols=68  Identities=13%  Similarity=0.267  Sum_probs=46.4

Q ss_pred             ecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCeEEEe---ecCCCCCeEEEEEEEcCC
Q psy535           68 LPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFT---RVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        68 ~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G~y~C~~~~~~  135 (460)
                      +..|+..+|.|.+.|. |....|+|++||..+............++++.+.   .+..+|...|+|.+....
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEP   86 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCC
Confidence            3457788999999995 5567899999999875433333334445543332   245566678999998754

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.94  E-value=2.4e-05  Score=54.68  Aligned_cols=73  Identities=16%  Similarity=0.208  Sum_probs=47.3

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC------c-------cccccEEEee----cCeEEEeecC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE------P-------YQTKDIVVMQ----NGSLLFTRVN  120 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~------~-------~~~~~~~~~~----~~~l~i~~~~  120 (460)
                      +..|....+.+|++++|.|..... . ..+.||+  .++.+.      .       ....+.....    ...|.|.++.
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s~~-~-~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQNLN-H-DAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   80 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEECSC-C-SEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             EEcCCeEEEcCCCCEEEEEEEecC-C-CcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCC
Confidence            455777888999999999997543 2 3699997  221110      0       0011111111    1259999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy535          121 QNHQGRYTCTPYNA  134 (460)
Q Consensus       121 ~~d~G~y~C~~~~~  134 (460)
                      .+|+|.|.|.+...
T Consensus        81 ~~DSa~YyCa~~~~   94 (114)
T d1ogae1          81 KNPTAFYLCASSSR   94 (114)
T ss_dssp             SCCCEEEEEEEESS
T ss_pred             cCCceeEEEeeccC
Confidence            99999999987643

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.93  E-value=4.2e-05  Score=51.46  Aligned_cols=79  Identities=11%  Similarity=0.172  Sum_probs=48.3

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccc-cccEEEeecCeEEE---eecCCCCCeEEEEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQ-TKDIVVMQNGSLLF---TRVNQNHQGRYTCT  130 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~l~i---~~~~~~d~G~y~C~  130 (460)
                      +|.+.+.+.. ....|+..+|.|.+.|. |....|+|++||..+.... ........++++.+   ..+...+...|+|+
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~   83 (99)
T d1uvqa1           5 VPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCK   83 (99)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEE
T ss_pred             CCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEE
Confidence            4555543322 23456778999999996 5556799999999875321 12222233443222   23445667789999


Q ss_pred             EEcCC
Q psy535          131 PYNAH  135 (460)
Q Consensus       131 ~~~~~  135 (460)
                      +....
T Consensus        84 V~H~s   88 (99)
T d1uvqa1          84 VEHWG   88 (99)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            98753

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.92  E-value=2.9e-05  Score=53.99  Aligned_cols=74  Identities=14%  Similarity=0.256  Sum_probs=47.5

Q ss_pred             cceeeeecceeeEEEEEEEecCCC--CCeEEEeeC--Ceec----------CccccccEEEeec---CeEEEeecCCCCC
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPT--FQYVTWTKD--KRLL----------EPYQTKDIVVMQN---GSLLFTRVNQNHQ  124 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~--~~~~----------~~~~~~~~~~~~~---~~l~i~~~~~~d~  124 (460)
                      +|....+.+|++++|.|...+...  -..+.||+-  +...          ......++.....   ..|.|.+++.+|+
T Consensus         6 QP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   85 (112)
T d1lgva1           6 QPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDE   85 (112)
T ss_dssp             CCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             CCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccC
Confidence            366778889999999999765321  124899982  2111          0011122222222   2599999999999


Q ss_pred             eEEEEEEEcCC
Q psy535          125 GRYTCTPYNAH  135 (460)
Q Consensus       125 G~y~C~~~~~~  135 (460)
                      |.|.|.+.+..
T Consensus        86 a~YyCa~~~~~   96 (112)
T d1lgva1          86 ADYYCSSYDGS   96 (112)
T ss_dssp             EEEEEEEECSS
T ss_pred             EEEEEeeecCC
Confidence            99999886543

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.91  E-value=2.4e-05  Score=54.24  Aligned_cols=69  Identities=14%  Similarity=0.243  Sum_probs=45.5

Q ss_pred             eeeecceeeEEEEEEEecCC-CCCeEEEeeC--Cee---c-------CccccccEEEeec---CeEEEeecCCCCCeEEE
Q psy535           65 VQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRL---L-------EPYQTKDIVVMQN---GSLLFTRVNQNHQGRYT  128 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~---~-------~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~  128 (460)
                      ...+.+|++++|.|.+.+.. ....+.||+-  +..   +       ......+.....+   ..|.|.+++.+|++.|.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            57788899999999986543 2235899972  111   1       0111223333222   25999999999999999


Q ss_pred             EEEEc
Q psy535          129 CTPYN  133 (460)
Q Consensus       129 C~~~~  133 (460)
                      |.+..
T Consensus        89 CA~~~   93 (114)
T d2rhea_          89 CAAWN   93 (114)
T ss_dssp             EEEEE
T ss_pred             EeecC
Confidence            98764

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.90  E-value=3.6e-05  Score=53.49  Aligned_cols=73  Identities=22%  Similarity=0.277  Sum_probs=47.5

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC-------------ccccccEEEeec----CeEEEeec
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE-------------PYQTKDIVVMQN----GSLLFTRV  119 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~-------------~~~~~~~~~~~~----~~l~i~~~  119 (460)
                      ++..|....+.+|++++|.|..... . ..+.||+  .|+...             .....+......    ..|.|.++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~s~~-~-~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   79 (112)
T d2bnub1           2 VTQTPKFQVLKTGQSMTLQCAQDMN-H-EYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSA   79 (112)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSC-C-SEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSC
T ss_pred             eEECCCeEEECCCCCEEEEEEEECC-c-cceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCC
Confidence            3456777788899999999987553 2 3699998  221110             000111111111    25999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy535          120 NQNHQGRYTCTPYN  133 (460)
Q Consensus       120 ~~~d~G~y~C~~~~  133 (460)
                      ..+|+|.|.|.+..
T Consensus        80 ~~~DsavYyCA~~~   93 (112)
T d2bnub1          80 APSQTSVYFCASSY   93 (112)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CHHHCEEEEEeecC
Confidence            99999999998753

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=2.8e-05  Score=55.44  Aligned_cols=80  Identities=24%  Similarity=0.386  Sum_probs=53.0

Q ss_pred             ccCCCCeEEEEeeeecc-CCCCCCeeEEEcCCCccC---------------------CcccEEEe-------cceEEEcc
Q psy535          163 QRKVGESVDMHCEAQEA-EGTQKPTITWQRRDGVAL---------------------PKNRVKIV-------GGNITIEG  213 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~-~~~p~~~~~W~~~~~~~~---------------------~~~~~~~~-------~~~l~i~~  213 (460)
                      .+..|++++|.|.+... .......+.|++......                     ...+....       ...|.|.+
T Consensus        15 ~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~   94 (124)
T d1eaja_          15 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTN   94 (124)
T ss_dssp             EEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECS
T ss_pred             EEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEcc
Confidence            56789999999998411 111223688986321110                     01122221       13699999


Q ss_pred             ccceeceEEEEEEecccceeeeeeEEEEe
Q psy535          214 LRRVDFGYYECVVSNEVATIVQAAQLVVE  242 (460)
Q Consensus       214 ~~~~~~g~y~C~a~n~~g~~~~~~~l~v~  242 (460)
                      ++..|+|.|.|.+.+..+.....+.|.|.
T Consensus        95 v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          95 LQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            99999999999999988877777777664

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.88  E-value=5.3e-05  Score=53.19  Aligned_cols=75  Identities=12%  Similarity=0.254  Sum_probs=48.6

Q ss_pred             EEcceeeeecceeeEEEEEEEecCC-CCCeEEEee--CCeec----------CccccccEEEeec-----CeEEEeecCC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTK--DKRLL----------EPYQTKDIVVMQN-----GSLLFTRVNQ  121 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~--~~~~~----------~~~~~~~~~~~~~-----~~l~i~~~~~  121 (460)
                      ...+....+.+|++++|.|...+.. ....+.||+  .|+.+          .+....++....+     ..|.|.+++.
T Consensus         5 v~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~   84 (120)
T d1hxma1           5 VPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSE   84 (120)
T ss_dssp             EESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             eccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccc
Confidence            3455666788999999999987643 223599997  22111          0111123322221     2699999999


Q ss_pred             CCCeEEEEEEEcC
Q psy535          122 NHQGRYTCTPYNA  134 (460)
Q Consensus       122 ~d~G~y~C~~~~~  134 (460)
                      +|+|.|.|.....
T Consensus        85 ~Dsa~YyCA~~~~   97 (120)
T d1hxma1          85 RDEGSYYCACDTL   97 (120)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             cCCceeecCcccC
Confidence            9999999987543

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=2.2e-05  Score=55.44  Aligned_cols=74  Identities=14%  Similarity=0.091  Sum_probs=47.0

Q ss_pred             cceeeeecceeeEEEEEEEecC---C--CCCeEEEeeCCee-------------cCccccccEEEee-----cCeEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKAN---P--TFQYVTWTKDKRL-------------LEPYQTKDIVVMQ-----NGSLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~---~--~~~~v~W~~~~~~-------------~~~~~~~~~~~~~-----~~~l~i~~  118 (460)
                      .|....+.+|++|+|.|.+...   +  ....+.|++....             .......+.....     +.+|.|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            3566778899999999997521   1  1234677763211             1111223443332     23599999


Q ss_pred             cCCCCCeEEEEEEEcCC
Q psy535          119 VNQNHQGRYTCTPYNAH  135 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~~  135 (460)
                      ++.+|+|.|.|++....
T Consensus        86 v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CCGGGCEEEEEEEECC-
T ss_pred             CChhHCEEEEEEEEeCC
Confidence            99999999999997543

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.86  E-value=2e-05  Score=54.83  Aligned_cols=74  Identities=14%  Similarity=0.202  Sum_probs=47.9

Q ss_pred             EEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC-------------ccccccEEEe----ecCeEEEeecC
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE-------------PYQTKDIVVM----QNGSLLFTRVN  120 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~-------------~~~~~~~~~~----~~~~l~i~~~~  120 (460)
                      ...|....+.+|++++|.|..... . ..+.||+-  |..+.             ..........    ....|.|.+++
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~~-~-~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   79 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTMG-H-DKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESAR   79 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETTC-C-SEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCC
T ss_pred             EECCCEEEECCCCCEEEEEEEeCC-c-ccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccc
Confidence            356777888999999999997543 2 36999982  21110             0001111111    12359999999


Q ss_pred             CCCCeEEEEEEEcCC
Q psy535          121 QNHQGRYTCTPYNAH  135 (460)
Q Consensus       121 ~~d~G~y~C~~~~~~  135 (460)
                      .+|+|.|.|.+....
T Consensus        80 ~~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          80 PSHTSQYLCASSENI   94 (112)
T ss_dssp             TTTCSEEEEEEECSS
T ss_pred             ccccccEEEEEecCC
Confidence            999999999887543

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.1e-05  Score=55.29  Aligned_cols=67  Identities=16%  Similarity=0.265  Sum_probs=42.2

Q ss_pred             ceeeEEEEEEEecC-CCCCeEEEeeCCeecCcccc--ccEEEeecCe------EEEeecCCCCCeEEEEEEEcCCC
Q psy535           70 FRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQT--KDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        70 ~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      .++.++|.|.+.+. |....|+|++||..+.....  .......+++      |.|..-.-.....|+|.+.+...
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence            45679999999884 55568999999998753211  1112223333      44443333455679999987544

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.4e-05  Score=53.55  Aligned_cols=75  Identities=12%  Similarity=0.139  Sum_probs=50.1

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCc-ccE--EEecceEEEccccceeceEEEEEEe
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPK-NRV--KIVGGNITIEGLRRVDFGYYECVVS  227 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~-~~~--~~~~~~l~i~~~~~~~~g~y~C~a~  227 (460)
                      .|.+...|..  .+..|++|+|.|..    ......+.|++.+...... ...  ......+.|.++...|+|.|+|...
T Consensus         4 KPsLsa~P~~--~V~~G~~VTL~C~~----~~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~   77 (95)
T d1olla1           4 KPFIWAEPHF--MVPKEKQVTICCQG----NYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYR   77 (95)
T ss_dssp             CCEEEEESCS--EEETTCCEEEEEEC----CTTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEeeCCC--cccCCCcEEEEEec----CCCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeC
Confidence            3666666655  46799999999985    4455678888844321100 000  0112469999999999999999987


Q ss_pred             cccc
Q psy535          228 NEVA  231 (460)
Q Consensus       228 n~~g  231 (460)
                      +..+
T Consensus        78 ~~~~   81 (95)
T d1olla1          78 VGEL   81 (95)
T ss_dssp             ETTE
T ss_pred             CCCC
Confidence            6544

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.85  E-value=4.7e-05  Score=53.00  Aligned_cols=74  Identities=15%  Similarity=0.182  Sum_probs=47.9

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEee--CCeecC-------------ccccccEEEee----cCeEEEeec
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE-------------PYQTKDIVVMQ----NGSLLFTRV  119 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~-------------~~~~~~~~~~~----~~~l~i~~~  119 (460)
                      +...|....+.+|++++|.|..... . ..+.|||  .|..+.             .....+.....    ...|.|.++
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~~-~-~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   80 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDMD-H-ENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESA   80 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESSC-C-SEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSC
T ss_pred             EEccCCEEEECCCCCEEEEEEEcCC-c-cEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccC
Confidence            4456777888899999999986433 2 3689998  221110             00011222111    125999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy535          120 NQNHQGRYTCTPYNA  134 (460)
Q Consensus       120 ~~~d~G~y~C~~~~~  134 (460)
                      +.+|+|.|.|.+...
T Consensus        81 ~~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          81 STNQTSMYLCASSST   95 (113)
T ss_dssp             CGGGCEEEEEEEECT
T ss_pred             ccCCcccEEeeEccC
Confidence            999999999988643

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.84  E-value=1.4e-05  Score=53.60  Aligned_cols=66  Identities=17%  Similarity=0.246  Sum_probs=42.6

Q ss_pred             ceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCeEEE---eecCCCCCeEEEEEEEcCC
Q psy535           70 FRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLF---TRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        70 ~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~~~~  135 (460)
                      .+..++|.|.+.|. |....|+|++++..+............++++.+   ..+..+|...|+|.+.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEGGGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeCccCCEEEEEEEeCC
Confidence            34578999999996 555589999999887543333333344444222   1233456678999998643

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.83  E-value=1.9e-05  Score=55.02  Aligned_cols=75  Identities=13%  Similarity=0.219  Sum_probs=48.4

Q ss_pred             eeEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC-------------ccccccEEEe--e--cCeEEEee
Q psy535           58 KVTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE-------------PYQTKDIVVM--Q--NGSLLFTR  118 (460)
Q Consensus        58 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~-------------~~~~~~~~~~--~--~~~l~i~~  118 (460)
                      .++..|....+.+|++++|.|......  ..+.||+-  |....             .....++...  .  ...|.|.+
T Consensus         3 ~VtQ~P~~~~~~~G~~v~l~C~~~~~~--~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   80 (113)
T d1nfdb1           3 GVVQSPRHIIKEKGGRSVLTCIPISGH--SNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA   80 (113)
T ss_dssp             SCEEECSEEEEETTCCCEEEEECCTTC--CEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCS
T ss_pred             CEEEcCCEEEEeCCCCEEEEEEeCCCC--CEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecc
Confidence            345678888889999999999865432  36999982  21110             0001111111  1  12599999


Q ss_pred             cCCCCCeEEEEEEEcC
Q psy535          119 VNQNHQGRYTCTPYNA  134 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~~  134 (460)
                      ++.+|+|.|.|.+...
T Consensus        81 ~~~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          81 LELEDSAMYFCASSLR   96 (113)
T ss_dssp             CCGGGCEEECEEEESS
T ss_pred             cCcCCceeEEEEeecC
Confidence            9999999999987643

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.2e-05  Score=53.36  Aligned_cols=70  Identities=17%  Similarity=0.300  Sum_probs=49.0

Q ss_pred             CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccEEE-ecceEEEccccceeceEEEEEE
Q psy535          150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRVKI-VGGNITIEGLRRVDFGYYECVV  226 (460)
Q Consensus       150 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~a  226 (460)
                      .+|.+...|..  .+..|++|+|.|..    ......+.|++++.... ..+... ....+.|.++...|+|.|+|..
T Consensus         3 pkPsLsa~P~~--~V~~G~~VTL~C~~----~~~~~~f~L~Keg~~~~-~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2           3 DTPTLSVHPGP--EVISGEKVTFYCRL----DTATSMFLLLKEGRSSH-VQRGYGKVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             CCCEEEEESCS--EEETTCEEEEEEEC----SSSCSEEEEEEESSSCE-EEEEECSSEEEEEEEECCGGGCEEEEEEC
T ss_pred             CCCEEEEeCCC--cccCCCcEEEEECC----CCCCCEEEEEECCCccc-eeecCCCceeEEEecccChhcCceEEEEe
Confidence            35777777766  47889999999985    44566888888543221 111111 2346899999999999999964

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.83  E-value=5.3e-05  Score=52.34  Aligned_cols=74  Identities=14%  Similarity=0.210  Sum_probs=47.2

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCC----CCCeEEEeeC--Ceec----------CccccccEEEeec---CeEEEeec
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANP----TFQYVTWTKD--KRLL----------EPYQTKDIVVMQN---GSLLFTRV  119 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~----~~~~v~W~~~--~~~~----------~~~~~~~~~~~~~---~~l~i~~~  119 (460)
                      ++..|....+.+|++|+|.|...+..    ....+.||+-  |...          ......++.....   ..|.|.++
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~   83 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRV   83 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcc
Confidence            34567778889999999999865422    1124899972  2211          0111122322222   25999999


Q ss_pred             CCCCCeEEEEEEE
Q psy535          120 NQNHQGRYTCTPY  132 (460)
Q Consensus       120 ~~~d~G~y~C~~~  132 (460)
                      +.+|+|.|.|...
T Consensus        84 ~~eDsAvYYC~~~   96 (112)
T d1ncwl1          84 EAEDLGVYYCWQG   96 (112)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccCcCEeEEEEcC
Confidence            9999999999653

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.81  E-value=1.9e-05  Score=54.30  Aligned_cols=71  Identities=11%  Similarity=0.237  Sum_probs=46.1

Q ss_pred             cceeeeecceeeEEEEEEEecCCCCCeEEEee--CCe-e--cC-------ccccccEEEeec---CeEEEeecCCCCCeE
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTFQYVTWTK--DKR-L--LE-------PYQTKDIVVMQN---GSLLFTRVNQNHQGR  126 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~-~--~~-------~~~~~~~~~~~~---~~l~i~~~~~~d~G~  126 (460)
                      +|....+.+|++++|.|........ .+.||+  .|. +  +.       .....++.....   ..|.|.+++.+|+|.
T Consensus         5 QP~s~~~~~G~svtl~C~~~~~~~~-~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~   83 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSGDQLPKN-FAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAA   83 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGGGS-CCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSE
T ss_pred             CCCeeEECCCCCEEEEEECCCCCCc-cEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCce
Confidence            3556778889999999987543322 589998  222 1  10       011123332222   269999999999999


Q ss_pred             EEEEEEc
Q psy535          127 YTCTPYN  133 (460)
Q Consensus       127 y~C~~~~  133 (460)
                      |.|.+..
T Consensus        84 YyCA~~~   90 (108)
T d1nfde1          84 YYCLSSY   90 (108)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeec
Confidence            9998764

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.80  E-value=3.6e-05  Score=51.48  Aligned_cols=63  Identities=11%  Similarity=0.194  Sum_probs=40.4

Q ss_pred             eeeEEEEEEEecCCCCCeEEEee--CCee---c---C---ccccccEEEee--c---CeEEEeecCCCCCeEEEEEEEcC
Q psy535           71 RLQGVVQCHIKANPTFQYVTWTK--DKRL---L---E---PYQTKDIVVMQ--N---GSLLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        71 g~~~~l~C~~~~~~~~~~v~W~~--~~~~---~---~---~~~~~~~~~~~--~---~~l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      |++|+|.|........ .+.||+  .+..   |   .   .....++....  .   .+|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~-~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQ-SFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCC-EEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCC-cEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            6789999998765443 799998  2211   1   0   00112222211  1   25999999999999999988653

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.79  E-value=3.2e-05  Score=54.30  Aligned_cols=74  Identities=12%  Similarity=0.189  Sum_probs=46.5

Q ss_pred             EEcceeeeecceeeEEEEEEEecCC-CCCeEEEeeC--Cee---cC---c--------cccccEEEeec--C---eEEEe
Q psy535           60 TFTPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRL---LE---P--------YQTKDIVVMQN--G---SLLFT  117 (460)
Q Consensus        60 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~---~~---~--------~~~~~~~~~~~--~---~l~i~  117 (460)
                      ...|......+|++++|.|.+.+.. ....+.||+-  |+.   +.   .        ....+.....+  .   .|.|.
T Consensus         5 ~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~   84 (120)
T d1ypzf1           5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (120)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             EcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccc
Confidence            3445566777899999999876532 1224899981  211   10   0        01123333222  1   49999


Q ss_pred             ecCCCCCeEEEEEEEc
Q psy535          118 RVNQNHQGRYTCTPYN  133 (460)
Q Consensus       118 ~~~~~d~G~y~C~~~~  133 (460)
                      +++.+|+|.|.|....
T Consensus        85 ~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          85 SLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             SCCGGGCSEEEEEECC
T ss_pred             ccccccceeEEEEEcC
Confidence            9999999999998754

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.77  E-value=5.3e-05  Score=52.49  Aligned_cols=72  Identities=14%  Similarity=0.252  Sum_probs=46.7

Q ss_pred             cceeeeecceeeEEEEEEEecCC-CCCeEEEeeC--Ceec----------CccccccEEEeec-----CeEEEeecCCCC
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRLL----------EPYQTKDIVVMQN-----GSLLFTRVNQNH  123 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~~----------~~~~~~~~~~~~~-----~~l~i~~~~~~d  123 (460)
                      +|....+.+|++++|.|...+.. ....+.|++-  ++..          ......+.....+     ..|.|.+++.+|
T Consensus         6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D   85 (111)
T d1cd0a_           6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTED   85 (111)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCccc
Confidence            46667888999999999986543 1224899982  2211          0011122322221     259999999999


Q ss_pred             CeEEEEEEEc
Q psy535          124 QGRYTCTPYN  133 (460)
Q Consensus       124 ~G~y~C~~~~  133 (460)
                      +|.|.|...+
T Consensus        86 sa~YyCA~~~   95 (111)
T d1cd0a_          86 EADYYCQSYD   95 (111)
T ss_dssp             CEEEEEEEEE
T ss_pred             CcEEEEeecc
Confidence            9999998654

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.9e-05  Score=53.40  Aligned_cols=64  Identities=20%  Similarity=0.431  Sum_probs=44.6

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--------------CcccEEEe-------cceEEEccccceeceE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--------------PKNRVKIV-------GGNITIEGLRRVDFGY  221 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--------------~~~~~~~~-------~~~l~i~~~~~~~~g~  221 (460)
                      ....|++++|.|..   .......+.|++......              ...+....       +.+|.|.+++.+|+|.
T Consensus         5 ~~~~G~svtL~C~~---s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~   81 (97)
T d2nxyb1           5 LGKKGDTVELTCTA---SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   81 (97)
T ss_dssp             EEETTSCEEECCBC---SSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             EEEcCCcEEEEEEE---ecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEE
Confidence            45689999999997   455667899987543211              01122110       1269999999999999


Q ss_pred             EEEEEecc
Q psy535          222 YECVVSNE  229 (460)
Q Consensus       222 y~C~a~n~  229 (460)
                      |.|.+.+.
T Consensus        82 Y~C~v~~~   89 (97)
T d2nxyb1          82 YICEVEDQ   89 (97)
T ss_dssp             EEEEETTE
T ss_pred             EEEEEecC
Confidence            99999763

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=2.8e-05  Score=53.00  Aligned_cols=65  Identities=20%  Similarity=0.361  Sum_probs=42.0

Q ss_pred             eeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCe------EEEeecCCCCCeEEEEEEEcCC
Q psy535           71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      ++.++|.|.+.+. |....|+|++||...............+++      |.|..-.......|+|++.+..
T Consensus        19 ~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          19 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            5678999999985 666789999999876532222222333443      4444333334457999998754

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.75  E-value=0.0001  Score=51.91  Aligned_cols=72  Identities=11%  Similarity=0.250  Sum_probs=46.8

Q ss_pred             cceeeeecceeeEEEEEEEecCC-CCCeEEEee--CCeecC---------------ccccccEEEeec-----CeEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANP-TFQYVTWTK--DKRLLE---------------PYQTKDIVVMQN-----GSLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~--~~~~~~---------------~~~~~~~~~~~~-----~~l~i~~  118 (460)
                      ++......+|++++|.|.+.+.. ....+.||+  .|+.+.               .....++.+..+     ..|.|.+
T Consensus         7 p~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~   86 (123)
T d1hxmb1           7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN   86 (123)
T ss_dssp             CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred             CCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccc
Confidence            34456677899999999998743 223589998  121110               011234444332     1499999


Q ss_pred             cCCCCCeEEEEEEEc
Q psy535          119 VNQNHQGRYTCTPYN  133 (460)
Q Consensus       119 ~~~~d~G~y~C~~~~  133 (460)
                      ++.+|+|.|.|.+..
T Consensus        87 l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          87 VEKQDIATYYCALWE  101 (123)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cccccCcEEEEeeeC
Confidence            999999999998754

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=3.5e-05  Score=52.59  Aligned_cols=66  Identities=15%  Similarity=0.256  Sum_probs=42.5

Q ss_pred             ceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCe------EEEeecCCCCCeEEEEEEEcCC
Q psy535           70 FRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        70 ~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      .+.+++|.|.+.+. |....|+|+++|..+............+++      |.|..-.-.....|+|+|.+..
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            35578999999984 555579999999987643222222333443      4444333234667999998754

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.73  E-value=0.00019  Score=49.72  Aligned_cols=74  Identities=16%  Similarity=0.332  Sum_probs=49.7

Q ss_pred             eEEcceeeeecceeeEEEEEEEecCCCCCeEEEeeC--CeecC-------c-------cccccEEE--eecCeEEEeecC
Q psy535           59 VTFTPTVQYLPFRLQGVVQCHIKANPTFQYVTWTKD--KRLLE-------P-------YQTKDIVV--MQNGSLLFTRVN  120 (460)
Q Consensus        59 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~-------~-------~~~~~~~~--~~~~~l~i~~~~  120 (460)
                      +...|....+.+|++++|.|........ .+.||+-  |+.+.       .       ....++..  ..+..|.|..+.
T Consensus         4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~   82 (112)
T d1fo0b_           4 LEQNPRWRLVPRGQAVNLRCILKNSQYP-WMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVAN   82 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTCC-EEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEES
T ss_pred             EEeCCCeEEECCCCCEEEEEEEecCCCC-cEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCC
Confidence            4567778888999999999998665433 7999982  22110       0       00112211  233569999999


Q ss_pred             CCCCeEEEEEEEc
Q psy535          121 QNHQGRYTCTPYN  133 (460)
Q Consensus       121 ~~d~G~y~C~~~~  133 (460)
                      .+|++.|.|.+..
T Consensus        83 ~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          83 MSQGRTLYCTCSA   95 (112)
T ss_dssp             CCSCEEEEEEEES
T ss_pred             ccCCccEEEEEec
Confidence            9999999998753

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=4.4e-05  Score=52.39  Aligned_cols=72  Identities=13%  Similarity=0.198  Sum_probs=46.6

Q ss_pred             eeeeecceeeEEEEEEEecCC-CCCeEEEeeC--Cee----cCc---------cccccEEEeecC-----eEEEeecCCC
Q psy535           64 TVQYLPFRLQGVVQCHIKANP-TFQYVTWTKD--KRL----LEP---------YQTKDIVVMQNG-----SLLFTRVNQN  122 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~--~~~----~~~---------~~~~~~~~~~~~-----~l~i~~~~~~  122 (460)
                      +...+.+|++++|.|...+.. ....+.|++-  |+.    +..         ....++.+..+.     .|+|.+++.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            345678899999999986532 2225889982  221    100         001244444331     4999999999


Q ss_pred             CCeEEEEEEEcCC
Q psy535          123 HQGRYTCTPYNAH  135 (460)
Q Consensus       123 d~G~y~C~~~~~~  135 (460)
                      |+|.|.|......
T Consensus        83 Dsa~YyCa~~~~~   95 (110)
T d1u9ka_          83 DSGLYRCVIYHPP   95 (110)
T ss_dssp             GCEEEEEEEECTT
T ss_pred             CCEEEEEEEeCCC
Confidence            9999999876543

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.70  E-value=0.00015  Score=48.41  Aligned_cols=79  Identities=13%  Similarity=0.256  Sum_probs=44.4

Q ss_pred             CCeeEEcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccc-cccEEEeecCeEE---EeecCCCCCeEEEEE
Q psy535           56 PAKVTFTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQ-TKDIVVMQNGSLL---FTRVNQNHQGRYTCT  130 (460)
Q Consensus        56 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~l~---i~~~~~~d~G~y~C~  130 (460)
                      +|.+.+.|... ...++.++|.|.+.+. |....|+|.+||..+.... ........++++.   ...+...+...|+|.
T Consensus         2 ~P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~   80 (97)
T d1uvqb1           2 EPTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCH   80 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEE
T ss_pred             CCEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEE
Confidence            34444443222 2346678999999986 5556899999998765321 1122223344322   334566778899999


Q ss_pred             EEcCC
Q psy535          131 PYNAH  135 (460)
Q Consensus       131 ~~~~~  135 (460)
                      +....
T Consensus        81 V~H~s   85 (97)
T d1uvqb1          81 VEHPS   85 (97)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            98754

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=2.9e-05  Score=52.69  Aligned_cols=65  Identities=20%  Similarity=0.326  Sum_probs=42.0

Q ss_pred             eeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCe------EEEeecCCCCCeEEEEEEEcCC
Q psy535           71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      ...++|.|.+.+. |....|+|+++|..+............+++      |.|..-.-.....|+|++....
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            4568999999995 666789999999887532222223334443      4443332234677999998753

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=9.4e-05  Score=48.62  Aligned_cols=61  Identities=16%  Similarity=0.281  Sum_probs=39.3

Q ss_pred             eeeEEEEEEEecC-CCCCeEEEeeCCeecCcccc-ccEEEeecCe------EEEeecCCCCCeEEEEEEEcC
Q psy535           71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQT-KDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      ++.++|.|.+.+. |....|+|.++|..+..... .......+++      |.|.   ..+...|+|.+...
T Consensus        15 ~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~ytC~V~H~   83 (89)
T d2mhaa1          15 EDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQYYTCHVYHQ   83 (89)
T ss_dssp             SSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTTCEEEEECS
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCEEEEEEEEC
Confidence            4579999999995 55567999999988753211 1122233332      4443   34556799999764

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=9e-05  Score=49.44  Aligned_cols=64  Identities=16%  Similarity=0.234  Sum_probs=39.3

Q ss_pred             eeeEEEEEEEecC-CCCCeEEEeeCCeecCccccc-cEEEeecCe---EEEeecCCCCCeEEEEEEEcC
Q psy535           71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTK-DIVVMQNGS---LLFTRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~---l~i~~~~~~d~G~y~C~~~~~  134 (460)
                      +..++|.|.+.|. |....|+|++||..+...... ......+++   .....+...+...|+|++...
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~   83 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHE   83 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECT
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEEC
Confidence            3468999999996 555679999999887542211 111122222   111233445567899999864

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.67  E-value=3.3e-05  Score=52.55  Aligned_cols=66  Identities=21%  Similarity=0.403  Sum_probs=41.2

Q ss_pred             ceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecC------eEEEeecCCCCCeEEEEEEEcCC
Q psy535           70 FRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNG------SLLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        70 ~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      .+..++|.|.+.+. |....|+|.+||...............++      .|.|..-.-.....|+|.+.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            36679999999985 65668999999987543222222222333      24444333234567999998654

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=7.5e-05  Score=52.34  Aligned_cols=86  Identities=20%  Similarity=0.263  Sum_probs=50.6

Q ss_pred             CCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--------------CcccEEEe------cceEEEccccc
Q psy535          157 KPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--------------PKNRVKIV------GGNITIEGLRR  216 (460)
Q Consensus       157 ~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--------------~~~~~~~~------~~~l~i~~~~~  216 (460)
                      .|..+ .+..|++++|.|............+.|++......              ...+..+.      ..+|.|.++..
T Consensus         5 ~P~~V-~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~   83 (116)
T d1xeda_           5 GPEEV-NSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   83 (116)
T ss_dssp             CCSEE-EEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCCEE-EEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc
Confidence            45544 67789999999987210011123567876321100              11222221      12699999999


Q ss_pred             eeceEEEEEEecccceeeeeeEEEEec
Q psy535          217 VDFGYYECVVSNEVATIVQAAQLVVEG  243 (460)
Q Consensus       217 ~~~g~y~C~a~n~~g~~~~~~~l~v~~  243 (460)
                      .|+|.|.|.+..........+.|.|.+
T Consensus        84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          84 DDSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             GGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             CCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            999999998865443334456666654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=0.00011  Score=51.74  Aligned_cols=72  Identities=24%  Similarity=0.480  Sum_probs=47.8

Q ss_pred             CceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCC--CccC----------------------CcccEEEe--
Q psy535          152 PAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD--GVAL----------------------PKNRVKIV--  205 (460)
Q Consensus       152 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~--~~~~----------------------~~~~~~~~--  205 (460)
                      |.+...|... .+..|++++|.|.+   .+.....+.|++..  ....                      ...++...  
T Consensus         2 ~~~~~~P~~~-~~~~G~~vtL~C~~---~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~   77 (122)
T d1nezg_           2 PELRIFPKKM-DAELGQKVDLVCEV---LGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRD   77 (122)
T ss_dssp             CEEEEESSCE-EECTTCCEEEEEEE---ESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEE
T ss_pred             CceEEcCCEE-EECCCCCEEEEEEE---cCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECC
Confidence            4445556655 67899999999998   45556678998631  1110                      01111111  


Q ss_pred             -c--ceEEEccccceeceEEEEEEe
Q psy535          206 -G--GNITIEGLRRVDFGYYECVVS  227 (460)
Q Consensus       206 -~--~~l~i~~~~~~~~g~y~C~a~  227 (460)
                       +  .+|.|.+++.+|+|.|.|.+.
T Consensus        78 ~~~~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          78 TNNKYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             TTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEeEEEEcccccCCCEEEEeeEe
Confidence             1  159999999999999999875

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=0.00016  Score=50.58  Aligned_cols=70  Identities=14%  Similarity=0.161  Sum_probs=43.6

Q ss_pred             ceeeeecceeeEEEEEEEecCCCC--CeEEEeeC--CeecC------c------cc-cccEEE-eec--CeEEEeecCCC
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPTF--QYVTWTKD--KRLLE------P------YQ-TKDIVV-MQN--GSLLFTRVNQN  122 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~--~~~~~------~------~~-~~~~~~-~~~--~~l~i~~~~~~  122 (460)
                      |....+.+|++++|.|........  ..+.|++.  |+...      .      .. ...... ..+  ..|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            555667789999999998543322  23789982  22110      0      00 011111 111  26999999999


Q ss_pred             CCeEEEEEEE
Q psy535          123 HQGRYTCTPY  132 (460)
Q Consensus       123 d~G~y~C~~~  132 (460)
                      |+|.|.|.+.
T Consensus        86 Dsa~YyCa~~   95 (117)
T d1dqta_          86 DTGLYLCKVE   95 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cCEeEEEEEe
Confidence            9999999875

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.62  E-value=4.7e-05  Score=51.76  Aligned_cols=65  Identities=20%  Similarity=0.380  Sum_probs=42.0

Q ss_pred             eeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCe------EEEeecCCCCCeEEEEEEEcCC
Q psy535           71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      ...++|.|.+.+. |....|+|.++|.++............+++      |.|..........|+|.|....
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            4568999999886 444679999999876543222223333443      4444433345667999998753

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.60  E-value=0.00029  Score=49.48  Aligned_cols=79  Identities=27%  Similarity=0.387  Sum_probs=47.7

Q ss_pred             ccCCCCeEEEEeeeecc-CCCCCCeeEEEcCCCcc--C------------------CcccEEEe------cceEEEcccc
Q psy535          163 QRKVGESVDMHCEAQEA-EGTQKPTITWQRRDGVA--L------------------PKNRVKIV------GGNITIEGLR  215 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~-~~~p~~~~~W~~~~~~~--~------------------~~~~~~~~------~~~l~i~~~~  215 (460)
                      .+..|++++|.|.+... .......+.|.+.....  .                  ...|+...      +.+|.|.++.
T Consensus        10 ~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   89 (119)
T d1neua_          10 YGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLD   89 (119)
T ss_dssp             EEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCC
T ss_pred             EEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECCCC
Confidence            57889999999987421 11233478997632100  0                  01233321      1369999999


Q ss_pred             ceeceEEEEEEecccc--eeeeeeEEEE
Q psy535          216 RVDFGYYECVVSNEVA--TIVQAAQLVV  241 (460)
Q Consensus       216 ~~~~g~y~C~a~n~~g--~~~~~~~l~v  241 (460)
                      ..|+|.|.|.+.+..+  .....+.|.|
T Consensus        90 ~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          90 YSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             GGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             hHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            9999999999987543  2233445544

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00036  Score=42.72  Aligned_cols=58  Identities=14%  Similarity=0.284  Sum_probs=39.6

Q ss_pred             cceeeEEEEEEEecCCC-CCeEEEeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEE
Q psy535           69 PFRLQGVVQCHIKANPT-FQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPY  132 (460)
Q Consensus        69 ~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  132 (460)
                      ..|..+.|.|....... ...-.|.|+|+.|........    .-.+.|..  .+++|.|.|...
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~----~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ----KTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCS----EEEEEECG--GGCCEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCC----ceEEEEec--CCCCceEEEEEc
Confidence            34677899999977543 345899999999975332211    11355553  778999999964

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=5e-05  Score=51.60  Aligned_cols=65  Identities=18%  Similarity=0.274  Sum_probs=41.3

Q ss_pred             eeeEEEEEEEecC-CCCCeEEEeeCCeecCccc-cccEEEeecCe------EEEeecCCCCCeEEEEEEEcCC
Q psy535           71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQ-TKDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      +..++|.|.+.+. |....|+|++||..+.... ........+++      |.|..-.-.....|+|+|.+..
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            4468999999886 5556899999998765321 11112223333      5554444345788999998753

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.59  E-value=3.6e-06  Score=56.65  Aligned_cols=70  Identities=20%  Similarity=0.329  Sum_probs=44.9

Q ss_pred             eeecceeeEEEEEEEecCCCCCeEEEee--CCeecC----------ccccccEEEee-----cCeEEEeecCCCCCeEEE
Q psy535           66 QYLPFRLQGVVQCHIKANPTFQYVTWTK--DKRLLE----------PYQTKDIVVMQ-----NGSLLFTRVNQNHQGRYT  128 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~--~~~~~~----------~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~  128 (460)
                      ..+.+|++++|.|.....  ...+.|||  .|..+.          .....++....     ...|.|.+++.+|+|.|.
T Consensus         3 lsV~eG~~vtL~C~~~~~--~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKTS--INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCSSCCCCCBCCBCSSC--EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             ceECCCCCEEEEEEEeCC--cccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            457789999999987553  23699997  222111          00112222111     125999999999999999


Q ss_pred             EEEEcCCCC
Q psy535          129 CTPYNAHGT  137 (460)
Q Consensus       129 C~~~~~~g~  137 (460)
                      |.+....|.
T Consensus        81 CA~~~~~g~   89 (96)
T d1ymmd1          81 CATDTTSGT   89 (96)
T ss_dssp             EEEEETTSC
T ss_pred             EeEecCCCC
Confidence            988765443

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=7.1e-05  Score=46.89  Aligned_cols=61  Identities=11%  Similarity=0.297  Sum_probs=42.4

Q ss_pred             ceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCC-CCCeEEEEEEEc
Q psy535           70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQ-NHQGRYTCTPYN  133 (460)
Q Consensus        70 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~C~~~~  133 (460)
                      .|.+|+|+|.-..  . ..|.|.+++..+...............|.+.+... +++|.|.|.+..
T Consensus         9 SGTtV~LTCP~~~--~-~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           9 SGTTVILTCPQYP--G-SEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             ETTEEEEECSSCT--T-SCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             eCCEEEEECCCCC--C-CceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCC
Confidence            4889999997432  2 36999999988764333322333444688888766 799999999853

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=5.9e-05  Score=51.76  Aligned_cols=38  Identities=21%  Similarity=0.379  Sum_probs=30.3

Q ss_pred             cccceEEEeeCC--eEEEeecCCCCCeeEEEEEEeCCCCc
Q psy535            7 SLETRVVIKKDG--TLVINPVGSDDSGLYMCEVSNGIGEP   44 (460)
Q Consensus         7 ~~~~r~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~~~~~   44 (460)
                      ...+|+.+..+|  +|.|.+++.+|+|.|.|.+.+..+..
T Consensus        52 ~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~V~~~~~~~   91 (105)
T d1dr9a1          52 EYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDA   91 (105)
T ss_dssp             HHHTTEEEESTTTTEEEECSCCGGGCEEEEEEEEECCTTS
T ss_pred             ceeeeeeeccCCcEEEEECcCChHHCeEEEEEEEeCCCCC
Confidence            345677776654  99999999999999999998765543

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.56  E-value=0.00025  Score=47.55  Aligned_cols=73  Identities=16%  Similarity=0.181  Sum_probs=48.4

Q ss_pred             CCCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCccc-EEEec--ceEEEccccceeceEEEEEE
Q psy535          150 KPPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNR-VKIVG--GNITIEGLRRVDFGYYECVV  226 (460)
Q Consensus       150 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~-~~~~~--~~l~i~~~~~~~~g~y~C~a  226 (460)
                      ..|.+...|..  .+..|++|+|.|..    ..+...+.|++++........ .....  ..+.|..+...|+|.|+|.-
T Consensus         5 pkPsLsa~P~~--~V~~G~~VTL~C~~----~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y   78 (99)
T d1nkra2           5 EKPSLSAQPGP--TVLAGENVTLSCSS----RSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFG   78 (99)
T ss_dssp             CCCEEEEESCS--EECTTCEEEEEEEE----SSCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEE
T ss_pred             CCCEEEEeCCC--cccCCCeEEEEECC----CCCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEe
Confidence            35667777765  57899999999985    445668899885543221111 11122  24677788888999999976


Q ss_pred             ec
Q psy535          227 SN  228 (460)
Q Consensus       227 ~n  228 (460)
                      ..
T Consensus        79 ~~   80 (99)
T d1nkra2          79 SF   80 (99)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

>d2qfra1 b.1.12.1 (A:9-120) Purple acid phosphatase, N-terminal domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Purple acid phosphatase, N-terminal domain
family: Purple acid phosphatase, N-terminal domain
domain: Purple acid phosphatase, N-terminal domain
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.56  E-value=0.00036  Score=47.91  Aligned_cols=91  Identities=23%  Similarity=0.333  Sum_probs=52.2

Q ss_pred             CCCcceEEEeec---ceEEEEecCCCCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          344 GPPRNVSVTEVN---NGFVISWQPPLERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       344 ~~p~~~~~~~~~---~~v~l~W~~~~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      .+|..+.+....   +++.|+|.-....+.+    .|+|-.... ......+    ....+            .......
T Consensus        17 ~~P~qvhlt~~~~~~tsm~VsW~T~~~~~~~----~V~yg~~~~~~~~~a~~----~~~~~------------~~~~~~~   76 (112)
T d2qfra1          17 NAPQQVHITQGDLVGRAMIISWVTMDEPGSS----AVRYWSEKNGRKRIAKG----KMSTY------------RFFNYSS   76 (112)
T ss_dssp             TCCEEEEEEECSSSSSCEEEEEEESSSCCCC----EEEEEESSSCCCEEEEC----EEECC------------BCSSCBC
T ss_pred             CCCccEEEeCcCCCCCEEEEEEECCCCCCCc----EEEEEECCCCCCcEEEE----EEEEE------------EecccCC
Confidence            468888887543   5899999775443333    344443322 0000000    00000            0000011


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      .-.....|.+|+|++.|.+||      |.+.+|++..|+|.
T Consensus        77 ~~~h~v~Lt~L~P~T~Y~YrV------G~~~~S~~~~F~T~  111 (112)
T d2qfra1          77 GFIHHTTIRKLKYNTKYYYEV------GLRNTTRRFSFITP  111 (112)
T ss_dssp             CEEEEEEECSCCTTCEEEEEE------CCSSSCEEEEEECC
T ss_pred             cEEEEEEECCCCCCCEEEEEE------CCCCceeeEEEEcC
Confidence            123568899999999999998      44458899999984

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00013  Score=51.17  Aligned_cols=72  Identities=17%  Similarity=0.175  Sum_probs=44.2

Q ss_pred             cceeeeecceeeEEEEEEEecCCCC--CeEEEeeC--CeecC-------c-----cccccE-EEee---cCeEEEeecCC
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPTF--QYVTWTKD--KRLLE-------P-----YQTKDI-VVMQ---NGSLLFTRVNQ  121 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~--~~~~~-------~-----~~~~~~-~~~~---~~~l~i~~~~~  121 (460)
                      +|....+.+|++++|.|........  ..+.|+|.  ++...       .     ...... ....   ...|.|.+++.
T Consensus         5 QP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           5 QPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred             CCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence            3556667889999999998543222  24889983  21110       0     000000 0011   12599999999


Q ss_pred             CCCeEEEEEEEc
Q psy535          122 NHQGRYTCTPYN  133 (460)
Q Consensus       122 ~d~G~y~C~~~~  133 (460)
                      +|+|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (118)
T d1i8lc_          85 MDTGLYICKVEL   96 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEEEeEec
Confidence            999999998754

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.52  E-value=0.00028  Score=48.40  Aligned_cols=68  Identities=16%  Similarity=0.262  Sum_probs=44.5

Q ss_pred             eeeecceeeEEEEEEEecCC-CCCeEEEee--CCeec------Cc---------cccccEEEeecC-----eEEEeecCC
Q psy535           65 VQYLPFRLQGVVQCHIKANP-TFQYVTWTK--DKRLL------EP---------YQTKDIVVMQNG-----SLLFTRVNQ  121 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~--~~~~~------~~---------~~~~~~~~~~~~-----~l~i~~~~~  121 (460)
                      ...+..|++++|.|.+.|.. ..-.+.|++  .|+.+      ..         .-..|+.+..+.     .|+|.+++.
T Consensus         9 ~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~   88 (119)
T d1qnzh_           9 AELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTS   88 (119)
T ss_dssp             CCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECG
T ss_pred             CceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCc
Confidence            34566799999999998753 222488997  33221      11         012345554322     399999999


Q ss_pred             CCCeEEEEEEE
Q psy535          122 NHQGRYTCTPY  132 (460)
Q Consensus       122 ~d~G~y~C~~~  132 (460)
                      +|++.|.|...
T Consensus        89 eDsAvYYCA~~   99 (119)
T d1qnzh_          89 DDSAVYYCAIH   99 (119)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cceeEEEEEEe
Confidence            99999999654

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=7.9e-05  Score=51.11  Aligned_cols=67  Identities=18%  Similarity=0.203  Sum_probs=40.4

Q ss_pred             eeeEEEEEEEecC-CCCCeEEEeeCCeecCcccc--ccEEEeecCe------EEEeecCCCCCeEEEEEEEcCCCC
Q psy535           71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQT--KDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      +..++|.|.+.+. |....|+|.+||..+.....  .......+++      |.|..-.-.....|+|.+......
T Consensus        20 ~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~   95 (107)
T d1mjul2          20 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST   95 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            4568999999885 55568999999987653110  0001112233      444433323366799999875543

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=8.2e-05  Score=47.50  Aligned_cols=48  Identities=21%  Similarity=0.263  Sum_probs=38.9

Q ss_pred             CcccceEEEeeCCeEEEeecCCCCCeeEEEEEEeCCCCcc-eeeeEEEE
Q psy535            6 GSLETRVVIKKDGTLVINPVGSDDSGLYMCEVSNGIGEPQ-AAQAYLNV   53 (460)
Q Consensus         6 ~~~~~r~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v   53 (460)
                      -...+.|.++.||+|.|.++..+|+|+|...|.+..|... ..++.|.|
T Consensus        51 f~~~~~y~i~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI   99 (101)
T d1hnfa1          51 FKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI   99 (101)
T ss_dssp             EESCTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             CCCCceEEEccCCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEe
Confidence            3556789999999999999999999999999999988742 33344444

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.50  E-value=0.00044  Score=47.08  Aligned_cols=64  Identities=20%  Similarity=0.331  Sum_probs=43.1

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCC--ccC------------CcccEEEe----cceEEEccccceeceEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDG--VAL------------PKNRVKIV----GGNITIEGLRRVDFGYYEC  224 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~--~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C  224 (460)
                      .+..|+.++|.|..   .......+.|++...  .+.            ...+....    ...|.|.++..+|++.|.|
T Consensus        11 ~~~~G~svtl~C~~---s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyC   87 (106)
T d1a0ql1          11 SASLGGKVTITCKA---SQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYC   87 (106)
T ss_dssp             EECTTCCEEEEEEE---SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEE
T ss_pred             EECCCCCEEEEEEc---CCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEE
Confidence            57899999999987   444445689987421  110            11122221    1269999999999999999


Q ss_pred             EEecc
Q psy535          225 VVSNE  229 (460)
Q Consensus       225 ~a~n~  229 (460)
                      .+...
T Consensus        88 a~~~~   92 (106)
T d1a0ql1          88 LQYYN   92 (106)
T ss_dssp             EECSS
T ss_pred             EEeCC
Confidence            87543

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.49  E-value=0.00019  Score=47.77  Aligned_cols=64  Identities=23%  Similarity=0.329  Sum_probs=40.1

Q ss_pred             eeeEEEEEEEecC-CCCCeEEEeeCCeecCcccc--ccEEEeecCeEEE---eecCCCCCeEEEEEEEcC
Q psy535           71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQT--KDIVVMQNGSLLF---TRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~~~  134 (460)
                      +..++|.|.+.+. |....|+|+++|..+.....  .......++++.+   ..+...+...|+|.+...
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHS   84 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEET
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEEC
Confidence            3468999999995 66678999999988753221  1222223333221   223345566799999864

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00037  Score=48.32  Aligned_cols=70  Identities=23%  Similarity=0.425  Sum_probs=45.3

Q ss_pred             eCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCC--ccC------------------CcccEEEe--c--ceEEE
Q psy535          156 IKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDG--VAL------------------PKNRVKIV--G--GNITI  211 (460)
Q Consensus       156 ~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~--~~~------------------~~~~~~~~--~--~~l~i  211 (460)
                      ..|... .+..|++++|.|.+.  .......+.|++...  .+.                  ...++...  .  ..|.|
T Consensus         5 ~sP~~~-t~~~G~~vtL~C~~~--~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I   81 (114)
T d1akjd_           5 VSPLDR-TWNLGETVELKCQVL--LSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL   81 (114)
T ss_dssp             EECCSC-CCCTTCCEEEEEEEC--CSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred             ECCCcE-eccCCCcEEEEEEeC--CCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence            345554 688999999999973  222344688987431  110                  01122221  1  25999


Q ss_pred             ccccceeceEEEEEEec
Q psy535          212 EGLRRVDFGYYECVVSN  228 (460)
Q Consensus       212 ~~~~~~~~g~y~C~a~n  228 (460)
                      .+++.+|+|.|.|.+..
T Consensus        82 ~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          82 SDFRRENEGYYFCSALS   98 (114)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             ccCCCCCCEEEeEeEcC
Confidence            99999999999998764

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00035  Score=45.98  Aligned_cols=78  Identities=18%  Similarity=0.238  Sum_probs=53.7

Q ss_pred             EcceeeeecceeeEEEEEEEecCCCCCeEE-EeeCCeecCccccccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcc
Q psy535           61 FTPTVQYLPFRLQGVVQCHIKANPTFQYVT-WTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQG  139 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~-W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~  139 (460)
                      ..|+...+.+|+++.+.|.+.. |.. .++ |..++..+.+ ....+.-....-+.|.+++..++|.|+|.|... |...
T Consensus        10 ~~p~~V~v~eg~~~vIPC~vT~-P~~-~VtL~~~~~~~~~p-~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~-g~~~   85 (95)
T d1fltx_          10 EIPEIIHMTEGRELVIPCRVTS-PNI-TVTLKKFPLDTLIP-DGKRIIWDSRKGFIISNATYKEIGLLTCEATVN-GHLY   85 (95)
T ss_dssp             SSCEEEEECTTSCEEECCCBSC-TTS-CCEEEETTTEEECC-CSSSEEEETTTEEEESSCCGGGCEEEEEEEEET-TEEE
T ss_pred             CCCCEEEEeCCCCEEEEccCCC-CCc-eeEEEeccCCccCC-CCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC-CEEE
Confidence            3456677889999999999975 554 444 4446666654 223444344456999999999999999999754 4433


Q ss_pred             eee
Q psy535          140 SSG  142 (460)
Q Consensus       140 ~~~  142 (460)
                      .+.
T Consensus        86 ~S~   88 (95)
T d1fltx_          86 KTN   88 (95)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=3.7e-05  Score=52.35  Aligned_cols=65  Identities=17%  Similarity=0.233  Sum_probs=40.1

Q ss_pred             eeeEEEEEEEecC-CCCCeEEEeeCCeecCcccc-ccEEEeecCe------EEEeecCCCCCeEEEEEEEcCC
Q psy535           71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQT-KDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAH  135 (460)
Q Consensus        71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~  135 (460)
                      ++.++|.|.+.+. |....|+|++||..+..... .......+++      |.|....-.....|+|.+.+..
T Consensus        20 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          20 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred             CCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            5668999999994 55567999999988753211 1222233443      3333222223556999998753

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.48  E-value=0.00045  Score=47.51  Aligned_cols=67  Identities=15%  Similarity=0.288  Sum_probs=43.4

Q ss_pred             eeecceeeEEEEEEEecCCC---CCeEEEee--CCeecC--------------ccccccEEEeecC-----eEEEeecCC
Q psy535           66 QYLPFRLQGVVQCHIKANPT---FQYVTWTK--DKRLLE--------------PYQTKDIVVMQNG-----SLLFTRVNQ  121 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~---~~~v~W~~--~~~~~~--------------~~~~~~~~~~~~~-----~l~i~~~~~  121 (460)
                      ..+..|++++|.|.+.|..-   ...+.|+|  .|+.+.              +.-..|+.+..+.     .|+|.+++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            34566999999999877432   12578997  232110              0012345544332     499999999


Q ss_pred             CCCeEEEEEEE
Q psy535          122 NHQGRYTCTPY  132 (460)
Q Consensus       122 ~d~G~y~C~~~  132 (460)
                      +|++.|.|...
T Consensus        90 eDsAvYyCAr~  100 (120)
T d2agjh1          90 VDTATYYCART  100 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEeeEec
Confidence            99999999644

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.48  E-value=0.00022  Score=49.51  Aligned_cols=64  Identities=19%  Similarity=0.321  Sum_probs=44.2

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--------------CcccEEEe------cceEEEccccceeceEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--------------PKNRVKIV------GGNITIEGLRRVDFGYY  222 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--------------~~~~~~~~------~~~l~i~~~~~~~~g~y  222 (460)
                      .+..|+.++|.|..   .......+.|++......              ...+....      ..+|.|.++..+|+|.|
T Consensus        11 ~~~~G~~vtL~C~~---~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y   87 (114)
T d2cdea1          11 IILEGKNCTLQCNY---TVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASY   87 (114)
T ss_dssp             EEETTCCCEEEEEE---CCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEE
T ss_pred             EEeCCCCEEEEEEE---cCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCccc
Confidence            57789999999998   455566899997431110              11122221      12599999999999999


Q ss_pred             EEEEecc
Q psy535          223 ECVVSNE  229 (460)
Q Consensus       223 ~C~a~n~  229 (460)
                      .|.+...
T Consensus        88 ~Ca~~~~   94 (114)
T d2cdea1          88 ICVVSDR   94 (114)
T ss_dssp             EEEEECS
T ss_pred             ceeeecC
Confidence            9998763

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.48  E-value=1.3e-05  Score=54.85  Aligned_cols=66  Identities=15%  Similarity=0.200  Sum_probs=41.1

Q ss_pred             eeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCe------EEEeecCCCCCeEEEEEEEcCCC
Q psy535           71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAHG  136 (460)
Q Consensus        71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~g  136 (460)
                      +..++|.|.+.+. |....|+|++||..+............+++      |.|....-.+...|+|.|.+...
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~   92 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGE   92 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCC
Confidence            4568999999984 555689999999987632222222223333      33332222445679999987654

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.0002  Score=48.70  Aligned_cols=77  Identities=12%  Similarity=0.130  Sum_probs=41.5

Q ss_pred             EcceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCe------EEEeecCCC--CCeEEEEEE
Q psy535           61 FTPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGS------LLFTRVNQN--HQGRYTCTP  131 (460)
Q Consensus        61 ~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~--d~G~y~C~~  131 (460)
                      +.|..........++|.|.+.+. |....|+|.++|..+............+++      |.|....-.  ....|+|.|
T Consensus        11 l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V   90 (105)
T d1dn0b2          11 LVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKV   90 (105)
T ss_dssp             EECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEE
T ss_pred             ECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEE
Confidence            34433333445678999999995 556789999988765422111111224443      333322211  124799999


Q ss_pred             EcCCCC
Q psy535          132 YNAHGT  137 (460)
Q Consensus       132 ~~~~g~  137 (460)
                      .+..+.
T Consensus        91 ~H~~~~   96 (105)
T d1dn0b2          91 QHPNGN   96 (105)
T ss_dssp             ECTTCC
T ss_pred             EECCCC
Confidence            876544

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00014  Score=49.81  Aligned_cols=67  Identities=15%  Similarity=0.275  Sum_probs=40.9

Q ss_pred             eeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccE--EEeecC------eEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           71 RLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDI--VVMQNG------SLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        71 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~--~~~~~~------~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      +..++|.|.+.+. |....|+|++||..+........  ....++      .|.|..-.-.....|+|.+.+....
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~   95 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS   95 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            4578999999985 55568999999987653211100  001123      3555443334456799999875443

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.44  E-value=0.00033  Score=47.56  Aligned_cols=70  Identities=10%  Similarity=0.172  Sum_probs=46.5

Q ss_pred             eeeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------C---------ccccccEEEeecC-----eEEEeecC
Q psy535           64 TVQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------E---------PYQTKDIVVMQNG-----SLLFTRVN  120 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~---------~~~~~~~~~~~~~-----~l~i~~~~  120 (460)
                      ....+..|+++.|.|.+.|..- .-.+.|++  .|+.+      .         +.-..|+.+..+.     .|+|.+++
T Consensus         8 g~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~   87 (117)
T d1iqdb1           8 GAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLR   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccC
Confidence            3455677999999999987532 22478887  23221      1         1123455555432     39999999


Q ss_pred             CCCCeEEEEEEEc
Q psy535          121 QNHQGRYTCTPYN  133 (460)
Q Consensus       121 ~~d~G~y~C~~~~  133 (460)
                      .+|++.|.|....
T Consensus        88 ~eDtAvYYCA~~~  100 (117)
T d1iqdb1          88 SDDTAVYYCAVPD  100 (117)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cCcceEEEEeEcC
Confidence            9999999998654

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.43  E-value=0.0006  Score=46.50  Aligned_cols=68  Identities=13%  Similarity=0.192  Sum_probs=46.0

Q ss_pred             eeecceeeEEEEEEEecCCC-CCeEEEee--CCeec--------------CccccccEEEeecC-----eEEEeecCCCC
Q psy535           66 QYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL--------------EPYQTKDIVVMQNG-----SLLFTRVNQNH  123 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~--------------~~~~~~~~~~~~~~-----~l~i~~~~~~d  123 (460)
                      ..+..|+++.|.|.+.|..- ...+.|+|  .|+.+              .+.-..|+.+..+.     .|+|.+++.+|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            44667999999999988642 23488987  22211              11112456665543     49999999999


Q ss_pred             CeEEEEEEEc
Q psy535          124 QGRYTCTPYN  133 (460)
Q Consensus       124 ~G~y~C~~~~  133 (460)
                      ++.|.|....
T Consensus        89 tA~YYCAr~~   98 (119)
T d1kxvc_          89 TAMYYCKPSL   98 (119)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceEeeeecc
Confidence            9999997543

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.42  E-value=0.00013  Score=49.96  Aligned_cols=86  Identities=14%  Similarity=0.261  Sum_probs=48.5

Q ss_pred             CCeeEEc-ceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCeEE---EeecCCCC-CeEEEE
Q psy535           56 PAKVTFT-PTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLL---FTRVNQNH-QGRYTC  129 (460)
Q Consensus        56 ~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~---i~~~~~~d-~G~y~C  129 (460)
                      +|.+.+. |....+..+..++|.|.+.+. |....|+|++||..+............++++.   ...+..+| ...|+|
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~~~ytC   87 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLDKEHRC   87 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGGSCEEE
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCCCeEEE
Confidence            4444433 343445556789999999885 55567999999887643211111112233211   12233344 336999


Q ss_pred             EEEcCCCCccee
Q psy535          130 TPYNAHGTQGSS  141 (460)
Q Consensus       130 ~~~~~~g~~~~~  141 (460)
                      .+.+........
T Consensus        88 ~V~H~s~~~~i~   99 (107)
T d1hxmb2          88 IVRHENNKNGVD   99 (107)
T ss_dssp             EEEETTSGGGSC
T ss_pred             EEEECCCCCCCc
Confidence            998865554333

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=0.00016  Score=48.92  Aligned_cols=65  Identities=14%  Similarity=0.190  Sum_probs=41.4

Q ss_pred             ceeeEEEEEEEec-CCCCCeEEEeeCCeecCccccccEEEeecC------eEEEeecCCCCCeEEEEEEEcCCCC
Q psy535           70 FRLQGVVQCHIKA-NPTFQYVTWTKDKRLLEPYQTKDIVVMQNG------SLLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        70 ~g~~~~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      .+..++|.|.+.+ +|....|.|.+++...........  ..++      .|.|..-.- +.|.|+|.+.+....
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~--~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~   90 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAV--LQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSS   90 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCE--EETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGT
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeee--cCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCC
Confidence            4678999999998 466678999988865432222221  2333      355543333 467899999875443

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00013  Score=50.45  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=27.6

Q ss_pred             cccceEEEeeC-CeEEEeecCCCCCeeEEEEEEeCC
Q psy535            7 SLETRVVIKKD-GTLVINPVGSDDSGLYMCEVSNGI   41 (460)
Q Consensus         7 ~~~~r~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~   41 (460)
                      .+.+|..+..+ .+|.|.+++.+|+|.|.|.+....
T Consensus        57 ~~~~r~~~~~~~~sL~I~~v~~~D~G~Y~C~V~~~~   92 (110)
T d1ncna_          57 KYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKK   92 (110)
T ss_dssp             TTTTSEEEETTTTEEEECSCCGGGCEEEEEEEEEEC
T ss_pred             ceEEEEeccCCeEEEEECCCChhHCEEEEEEEEecC
Confidence            45566666443 599999999999999999997543

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.40  E-value=0.00038  Score=46.26  Aligned_cols=72  Identities=18%  Similarity=0.207  Sum_probs=48.6

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccE-EE----ecceEEEccccceeceEEEEE
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV-KI----VGGNITIEGLRRVDFGYYECV  225 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~-~~----~~~~l~i~~~~~~~~g~y~C~  225 (460)
                      .|.+...|..  .+..|.+++|.|..    ......+.+++++......... ..    ....+.|.++...+.|.|+|.
T Consensus         2 KPsLsa~P~~--~V~~G~~VTl~C~~----~~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~   75 (96)
T d1nkra1           2 KPSLLAHPGP--LVKSEETVILQCWS----DVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCY   75 (96)
T ss_dssp             CCEEEEESCS--EEETTCCEEEEEEE----SSCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeeCCC--ccCCCCcEEEEECC----CCCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEE
Confidence            4666666755  57899999999995    4445678888754422111111 11    124699999999999999998


Q ss_pred             Eec
Q psy535          226 VSN  228 (460)
Q Consensus       226 a~n  228 (460)
                      -..
T Consensus        76 y~~   78 (96)
T d1nkra1          76 GSV   78 (96)
T ss_dssp             EEB
T ss_pred             EEc
Confidence            653

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.40  E-value=0.00053  Score=46.64  Aligned_cols=63  Identities=24%  Similarity=0.357  Sum_probs=42.6

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCC-CccC-------------CcccEEEe----cceEEEccccceeceEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRD-GVAL-------------PKNRVKIV----GGNITIEGLRRVDFGYYEC  224 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~-~~~~-------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C  224 (460)
                      .+..|+.++|.|..   .......+.|++.. +...             ...++...    ...|.|.++..+|++.|.|
T Consensus        12 sv~~G~svtl~C~~---s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (106)
T d1i8ka_          12 SVATGEKVTIRCMT---STDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYC   88 (106)
T ss_dssp             ECCTTCCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EECCCCCEEEEEEe---CCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeE
Confidence            57889999999987   44445568998631 1111             11222221    1259999999999999999


Q ss_pred             EEec
Q psy535          225 VVSN  228 (460)
Q Consensus       225 ~a~n  228 (460)
                      .+.+
T Consensus        89 a~~~   92 (106)
T d1i8ka_          89 LQSF   92 (106)
T ss_dssp             EECS
T ss_pred             ecCc
Confidence            8654

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.38  E-value=0.00014  Score=49.84  Aligned_cols=67  Identities=10%  Similarity=0.146  Sum_probs=44.2

Q ss_pred             eeecceeeEEEEEEEecCCC---CCeEEEee--CCeecC------c--------cccccEEEeecC-----eEEEeecCC
Q psy535           66 QYLPFRLQGVVQCHIKANPT---FQYVTWTK--DKRLLE------P--------YQTKDIVVMQNG-----SLLFTRVNQ  121 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~---~~~v~W~~--~~~~~~------~--------~~~~~~~~~~~~-----~l~i~~~~~  121 (460)
                      ..+..|++++|.|.+.|...   .-.+.|+|  .|+.++      .        .-..|+.+..+.     .|+|.+++.
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~   89 (120)
T d1ai1h1          10 AVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTN   89 (120)
T ss_dssp             SEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCG
T ss_pred             ceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeec
Confidence            44667999999999988642   12478987  332221      1        012355554432     399999999


Q ss_pred             CCCeEEEEEEE
Q psy535          122 NHQGRYTCTPY  132 (460)
Q Consensus       122 ~d~G~y~C~~~  132 (460)
                      +|++.|.|.-.
T Consensus        90 eDtAvYYCAr~  100 (120)
T d1ai1h1          90 EDTAMYYCSRE  100 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cceeEEEEEec
Confidence            99999999643

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=0.00041  Score=48.05  Aligned_cols=69  Identities=20%  Similarity=0.392  Sum_probs=45.1

Q ss_pred             CCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCC--Ccc-------------CCcccEEEe---c---ceEEEcccc
Q psy535          157 KPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRD--GVA-------------LPKNRVKIV---G---GNITIEGLR  215 (460)
Q Consensus       157 ~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~--~~~-------------~~~~~~~~~---~---~~l~i~~~~  215 (460)
                      .|... .+..|+.++|.|.+.  .......+.|++..  ..+             ....++...   +   ..|.|.+++
T Consensus         5 sP~~l-~v~~G~~vtl~C~~~--~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           5 YPAWL-TVSEGANATFTCSLS--NWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             ESSEE-EEETTCCEEEEEEES--CCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             CCCeE-EECCCCCEEEEEEEC--CCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            34444 678999999999983  23334578898732  111             012233322   1   148999999


Q ss_pred             ceeceEEEEEEec
Q psy535          216 RVDFGYYECVVSN  228 (460)
Q Consensus       216 ~~~~g~y~C~a~n  228 (460)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsg~YyCa~~~   94 (114)
T d3bp5a1          82 RNDSGIYLCGAIS   94 (114)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cCCCeEEEEEEEe
Confidence            9999999998764

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.37  E-value=0.00041  Score=47.04  Aligned_cols=67  Identities=7%  Similarity=0.089  Sum_probs=44.4

Q ss_pred             eeeeecceeeEEEEEEEecCCC-CCeEEEee--CCee------cCc---------cccccEEEeecC-----eEEEeecC
Q psy535           64 TVQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRL------LEP---------YQTKDIVVMQNG-----SLLFTRVN  120 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~------~~~---------~~~~~~~~~~~~-----~l~i~~~~  120 (460)
                      ....+..|+++.|.|.+.|..- .-.+.|+|  .|+.      +.+         .-..|+.+..+.     .|+|.+++
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~   87 (118)
T d1nlbh1           8 GPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLK   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecc
Confidence            3345677999999999987532 12488887  2321      111         112355555432     38999999


Q ss_pred             CCCCeEEEEE
Q psy535          121 QNHQGRYTCT  130 (460)
Q Consensus       121 ~~d~G~y~C~  130 (460)
                      .+|++.|.|.
T Consensus        88 ~eDtAvYYCA   97 (118)
T d1nlbh1          88 NEDTATYFCA   97 (118)
T ss_dssp             GGGCEEEEEE
T ss_pred             cCcceEEEEe
Confidence            9999999995

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.37  E-value=0.00033  Score=48.50  Aligned_cols=65  Identities=18%  Similarity=0.294  Sum_probs=43.7

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCC--CccC------------CcccEEE--e----cceEEEccccceeceEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRD--GVAL------------PKNRVKI--V----GGNITIEGLRRVDFGYY  222 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~--~~~~------------~~~~~~~--~----~~~l~i~~~~~~~~g~y  222 (460)
                      .+..|+.++|.|..   .+.....+.|++..  ..+.            ...+...  .    ...|.|.++..+|+|.|
T Consensus        11 ~v~~G~sv~L~C~~---s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~Y   87 (113)
T d2bnqd1          11 SVPEGENLVLNCSF---TDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATY   87 (113)
T ss_dssp             EEETTCCEEEEEEE---SCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEE
T ss_pred             EEcCCCCEEEEEEE---ecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEE
Confidence            57889999999998   45555678899732  1100            0011111  1    12699999999999999


Q ss_pred             EEEEeccc
Q psy535          223 ECVVSNEV  230 (460)
Q Consensus       223 ~C~a~n~~  230 (460)
                      .|.+....
T Consensus        88 yCa~~~~~   95 (113)
T d2bnqd1          88 LCAVRPTS   95 (113)
T ss_dssp             EEEEEESS
T ss_pred             eEeEecCC
Confidence            99987443

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.35  E-value=0.00067  Score=45.97  Aligned_cols=68  Identities=19%  Similarity=0.276  Sum_probs=45.2

Q ss_pred             eeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------C--------ccccccEEEeecC-----eEEEeecCCC
Q psy535           65 VQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------E--------PYQTKDIVVMQNG-----SLLFTRVNQN  122 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~--------~~~~~~~~~~~~~-----~l~i~~~~~~  122 (460)
                      ...+..|++++|.|.+.|..- .-.+.|++  .|+.+      .        +.-..|+.+..+.     .|+|.+++.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~e   88 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAA   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccc
Confidence            344667999999999988532 23588987  23211      1        1112345554432     4999999999


Q ss_pred             CCeEEEEEEE
Q psy535          123 HQGRYTCTPY  132 (460)
Q Consensus       123 d~G~y~C~~~  132 (460)
                      |++.|.|...
T Consensus        89 DtAvYyCAr~   98 (116)
T d7fabh1          89 DTAVYYCARN   98 (116)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeeee
Confidence            9999999754

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.33  E-value=0.00082  Score=45.89  Aligned_cols=71  Identities=8%  Similarity=0.115  Sum_probs=47.4

Q ss_pred             ceeeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------C---------ccccccEEEeecC-----eEEEeec
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------E---------PYQTKDIVVMQNG-----SLLFTRV  119 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~---------~~~~~~~~~~~~~-----~l~i~~~  119 (460)
                      +....+..|+++.|.|.+.|..- .-.+.|++  .|+.+      .         +.-..|+.+..+.     .|+|.++
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L   87 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL   87 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccccc
Confidence            45566778999999999987642 22488887  22211      1         1112455555432     3999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy535          120 NQNHQGRYTCTPYN  133 (460)
Q Consensus       120 ~~~d~G~y~C~~~~  133 (460)
                      +.+|++.|.|....
T Consensus        88 ~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          88 RPEDTAVYYCARDP  101 (122)
T ss_dssp             CGGGCEEEEEEEET
T ss_pred             CCCcceEEEEeecC
Confidence            99999999997653

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.33  E-value=0.00044  Score=46.96  Aligned_cols=70  Identities=9%  Similarity=0.172  Sum_probs=45.9

Q ss_pred             cceeeeecceeeEEEEEEEecCCC-CCeEEEee--CCee------cCc---------cccccEEEeecC-----eEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRL------LEP---------YQTKDIVVMQNG-----SLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~------~~~---------~~~~~~~~~~~~-----~l~i~~  118 (460)
                      ++....+..|+++.|.|.+.|..- .-.+.|++  .|+.      +..         .-..|+.+..+.     .|+|.+
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~s   85 (118)
T d2jelh1           6 QSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELAR   85 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccc
Confidence            334455677999999999988642 22488887  2321      111         112355555432     499999


Q ss_pred             cCCCCCeEEEEEE
Q psy535          119 VNQNHQGRYTCTP  131 (460)
Q Consensus       119 ~~~~d~G~y~C~~  131 (460)
                      ++.+|++.|.|.-
T Consensus        86 L~~eDTAvYYCAr   98 (118)
T d2jelh1          86 LTSEDSAIYYCAR   98 (118)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccCcceeeeEEE
Confidence            9999999999953

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00026  Score=47.17  Aligned_cols=71  Identities=18%  Similarity=0.341  Sum_probs=47.4

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC---CcccEEEecceEEEccccceeceEEEEEEe
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL---PKNRVKIVGGNITIEGLRRVDFGYYECVVS  227 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~---~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  227 (460)
                      .|.+...|..  .+..|++|+|.|..    ..+...+.+++++....   ...........+.|.++...|.|.|+|...
T Consensus         4 kP~Lsa~Ps~--~V~~G~~VTL~C~~----~~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~   77 (96)
T d1ugna1           4 KPTLWAEPGS--VITQGSPVTLRCQG----GQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYG   77 (96)
T ss_dssp             CCEEEEESCS--EEETTCCEEEEEEC----CTTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEeECCC--ccCCCCcEEEEEeC----CCCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEe
Confidence            4566666665  47899999999985    34455777777443211   000001123579999999999999999864

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.32  E-value=0.00074  Score=46.79  Aligned_cols=63  Identities=16%  Similarity=0.197  Sum_probs=42.7

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc-C-------------CcccEEEe------cceEEEccccceeceEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA-L-------------PKNRVKIV------GGNITIEGLRRVDFGYY  222 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~-~-------------~~~~~~~~------~~~l~i~~~~~~~~g~y  222 (460)
                      .+..|+.++|.|...   ......+.|++..... +             ...+....      ...|.|.+++.+|+|.|
T Consensus        12 ~v~~G~~vtL~C~~~---~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Y   88 (115)
T d1lp9e1          12 TLTEGLPVMLNCTYQ---STYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALY   88 (115)
T ss_dssp             EEETTSCEEECEEEE---CSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEE
T ss_pred             EECCCCCEEEEEEEe---CCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccc
Confidence            578899999999984   4445679998742110 0             11122221      12599999999999999


Q ss_pred             EEEEec
Q psy535          223 ECVVSN  228 (460)
Q Consensus       223 ~C~a~n  228 (460)
                      .|.+..
T Consensus        89 yCa~~~   94 (115)
T d1lp9e1          89 YCALFL   94 (115)
T ss_dssp             EEEEEE
T ss_pred             eEEEEc
Confidence            998754

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.31  E-value=0.00053  Score=46.40  Aligned_cols=68  Identities=13%  Similarity=0.228  Sum_probs=45.5

Q ss_pred             eeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec--------------CccccccEEEeecC-----eEEEeecCCC
Q psy535           65 VQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL--------------EPYQTKDIVVMQNG-----SLLFTRVNQN  122 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~--------------~~~~~~~~~~~~~~-----~l~i~~~~~~  122 (460)
                      ...+..|++++|.|.+.|..- .-.+.|++  .|+.+              .+.-..|+.+..+.     .|+|.+++.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~e   88 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccC
Confidence            345667999999999987642 23588987  23221              11112455555432     4999999999


Q ss_pred             CCeEEEEEEE
Q psy535          123 HQGRYTCTPY  132 (460)
Q Consensus       123 d~G~y~C~~~  132 (460)
                      |++.|.|...
T Consensus        89 DtAvYYCAr~   98 (117)
T d1c5db1          89 DTAIYFCTRE   98 (117)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEecc
Confidence            9999999643

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.31  E-value=0.00048  Score=47.37  Aligned_cols=67  Identities=18%  Similarity=0.226  Sum_probs=43.2

Q ss_pred             eeecceeeEEEEEEEecCCCC---CeEEEee--CCeecC--------------ccccccEEEeecC-----eEEEeecCC
Q psy535           66 QYLPFRLQGVVQCHIKANPTF---QYVTWTK--DKRLLE--------------PYQTKDIVVMQNG-----SLLFTRVNQ  121 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~~---~~v~W~~--~~~~~~--------------~~~~~~~~~~~~~-----~l~i~~~~~  121 (460)
                      ..+..|++++|.|.+.|..-.   -.+.|+|  .|+.+.              +.-..|+.+..+.     .|+|.+++.
T Consensus        10 ~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~   89 (123)
T d1r0ah1          10 GIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVET   89 (123)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccc
Confidence            446679999999999875321   1468987  222211              1112345444432     399999999


Q ss_pred             CCCeEEEEEEE
Q psy535          122 NHQGRYTCTPY  132 (460)
Q Consensus       122 ~d~G~y~C~~~  132 (460)
                      +|++.|.|...
T Consensus        90 eDsAvYyCAr~  100 (123)
T d1r0ah1          90 ADTAIYYCAQS  100 (123)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEeeccc
Confidence            99999999643

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.30  E-value=0.00083  Score=45.73  Aligned_cols=63  Identities=17%  Similarity=0.294  Sum_probs=43.1

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--------------CcccEEEe----cceEEEccccceeceEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--------------PKNRVKIV----GGNITIEGLRRVDFGYYEC  224 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C  224 (460)
                      .+..|+.++|.|..   .+.....+.|++......              ...++...    ...|.|.++..+|++.|.|
T Consensus        12 tv~~G~svtl~C~~---s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (107)
T d1ospl1          12 SVSLGDRVTITCKA---SEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFC   88 (107)
T ss_dssp             EECTTCCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEE
T ss_pred             EECCCCCEEEEEec---CCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEE
Confidence            57889999999987   344445789998421111              11233322    1269999999999999999


Q ss_pred             EEec
Q psy535          225 VVSN  228 (460)
Q Consensus       225 ~a~n  228 (460)
                      .+..
T Consensus        89 a~~~   92 (107)
T d1ospl1          89 QQYW   92 (107)
T ss_dssp             EECS
T ss_pred             eecc
Confidence            8753

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.30  E-value=0.00062  Score=46.23  Aligned_cols=66  Identities=12%  Similarity=0.205  Sum_probs=43.0

Q ss_pred             eeecceeeEEEEEEEecCC-CCCeEEEee--CCeec------Cc---------cccccEEEeecC-----eEEEeecCCC
Q psy535           66 QYLPFRLQGVVQCHIKANP-TFQYVTWTK--DKRLL------EP---------YQTKDIVVMQNG-----SLLFTRVNQN  122 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~-~~~~v~W~~--~~~~~------~~---------~~~~~~~~~~~~-----~l~i~~~~~~  122 (460)
                      ..+..|++++|.|.+.|.. ..-.+.|++  .|+.+      ..         .-..|+.+..+.     .|+|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            3466799999999998753 122488887  22211      11         012344444321     3999999999


Q ss_pred             CCeEEEEEE
Q psy535          123 HQGRYTCTP  131 (460)
Q Consensus       123 d~G~y~C~~  131 (460)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (115)
T d1f3dh1          90 DSAVYYCAN   98 (115)
T ss_dssp             GCEEEEEEE
T ss_pred             CcEEEEEec
Confidence            999999954

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00057  Score=46.90  Aligned_cols=66  Identities=8%  Similarity=0.086  Sum_probs=41.8

Q ss_pred             cCCCCeEEEEeeeeccCCCCCC--eeEEEcCCCccCCcc---------cEEEecceEEEccccceeceEEEEEEecccce
Q psy535          164 RKVGESVDMHCEAQEAEGTQKP--TITWQRRDGVALPKN---------RVKIVGGNITIEGLRRVDFGYYECVVSNEVAT  232 (460)
Q Consensus       164 ~~~g~~~~l~C~~~~~~~~p~~--~~~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  232 (460)
                      +..|+.++|.|.+.  .+.|.+  .+.|+++ +..+...         ........|.+.....++...|+|.|.+..+.
T Consensus        13 l~~G~~~~l~C~v~--~~~P~~~~~i~W~~g-~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          13 LEAGKPITVKCSVA--DVYPFDRLEIDLLKG-DHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             EETTSCEEEEEEEE--EEBSGGGEEEEEEET-TEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             ccCCCeEEEEeEeC--CcCCCCceEEEEecc-CceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            56899999999995  567754  6899984 3333111         11112234666544555555899999987654

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00047  Score=44.00  Aligned_cols=46  Identities=15%  Similarity=0.363  Sum_probs=40.6

Q ss_pred             ccEEEeecCeEEEeecCCCCCeEEEEEEEcCCCCcceeeEEEEEee
Q psy535          104 KDIVVMQNGSLLFTRVNQNHQGRYTCTPYNAHGTQGSSGQMEVLVR  149 (460)
Q Consensus       104 ~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~g~~~~~~~~~v~v~  149 (460)
                      ..+.+..+|+|.|.++.++|+|.|...+.+..|.......+.|.+.
T Consensus        55 ~~y~i~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          55 DTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             TTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             ceEEEccCCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            4578889999999999999999999999999998877777777664

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.29  E-value=0.0006  Score=46.54  Aligned_cols=66  Identities=17%  Similarity=0.290  Sum_probs=44.6

Q ss_pred             eeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------C--------ccccccEEEeecC-----eEEEeecCCC
Q psy535           65 VQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------E--------PYQTKDIVVMQNG-----SLLFTRVNQN  122 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~--------~~~~~~~~~~~~~-----~l~i~~~~~~  122 (460)
                      ...+..|+++.|.|.+.|..- .-.+.|++  .|+.+      .        +.-..|+.+..+.     .|+|.+++.+
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~e   88 (120)
T d1dn0b1           9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (120)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccc
Confidence            345667999999999988642 22488997  23221      1        1112456555432     3999999999


Q ss_pred             CCeEEEEE
Q psy535          123 HQGRYTCT  130 (460)
Q Consensus       123 d~G~y~C~  130 (460)
                      |++.|.|.
T Consensus        89 DtA~YYCA   96 (120)
T d1dn0b1          89 DTAVYYCA   96 (120)
T ss_dssp             GCEEEEEE
T ss_pred             cccEEEEE
Confidence            99999994

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.29  E-value=0.0006  Score=46.12  Aligned_cols=68  Identities=10%  Similarity=0.183  Sum_probs=45.0

Q ss_pred             eeeecceeeEEEEEEEecCCC-CCeEEEee--CCee------cC---------ccccccEEEeecC-----eEEEeecCC
Q psy535           65 VQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRL------LE---------PYQTKDIVVMQNG-----SLLFTRVNQ  121 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~------~~---------~~~~~~~~~~~~~-----~l~i~~~~~  121 (460)
                      ...+..|+++.|.|.+.|..- .-.+.|++  .|+.      +.         +.-..|+.+..+.     .|+|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~   88 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence            345667999999999988642 23588887  2221      11         1112445555432     389999999


Q ss_pred             CCCeEEEEEEE
Q psy535          122 NHQGRYTCTPY  132 (460)
Q Consensus       122 ~d~G~y~C~~~  132 (460)
                      +|++.|.|.-.
T Consensus        89 eDTAvYYCAr~   99 (117)
T d1jpth1          89 EDTAVYYCARD   99 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEeec
Confidence            99999999643

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.28  E-value=0.00057  Score=46.31  Aligned_cols=68  Identities=9%  Similarity=0.182  Sum_probs=45.2

Q ss_pred             eeeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------C---------ccccccEEEeecC-----eEEEeecC
Q psy535           64 TVQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------E---------PYQTKDIVVMQNG-----SLLFTRVN  120 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~---------~~~~~~~~~~~~~-----~l~i~~~~  120 (460)
                      ....+..|+++.|.|.+.|..- .-.+.|++  .|+.+      .         +.-..|+.+..+.     .|+|.+++
T Consensus         8 G~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~   87 (117)
T d1jnhb1           8 GAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLT   87 (117)
T ss_dssp             CCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccC
Confidence            3345667999999999998632 23588987  22211      1         1112355555432     38999999


Q ss_pred             CCCCeEEEEEE
Q psy535          121 QNHQGRYTCTP  131 (460)
Q Consensus       121 ~~d~G~y~C~~  131 (460)
                      .+|++.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (117)
T d1jnhb1          88 SEDSAVYSCSR   98 (117)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEee
Confidence            99999999964

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.28  E-value=0.00053  Score=47.53  Aligned_cols=66  Identities=21%  Similarity=0.271  Sum_probs=42.6

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCC--CccC-------------Cccc--EEEe----cceEEEccccceeceE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRD--GVAL-------------PKNR--VKIV----GGNITIEGLRRVDFGY  221 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~--~~~~-------------~~~~--~~~~----~~~l~i~~~~~~~~g~  221 (460)
                      .+..|++++|.|...  .......+.|++..  +.+.             ...+  ....    ...|.|.++..+|+|.
T Consensus        11 ~v~~G~~VtL~C~~~--~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~   88 (114)
T d2ak4d1          11 SVVEKEDVTLDCVYE--TRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAV   88 (114)
T ss_dssp             EEETTCCEEECCEEE--CSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred             EEeCCCCEEEEEEEc--CCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCCC
Confidence            578899999999874  33344568898732  1110             0001  1111    1259999999999999


Q ss_pred             EEEEEeccc
Q psy535          222 YECVVSNEV  230 (460)
Q Consensus       222 y~C~a~n~~  230 (460)
                      |.|.+....
T Consensus        89 YyCa~~~~~   97 (114)
T d2ak4d1          89 YFCALSGFY   97 (114)
T ss_dssp             EEEEEECSB
T ss_pred             ceEeCCCCC
Confidence            999876543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.28  E-value=0.00062  Score=46.25  Aligned_cols=70  Identities=11%  Similarity=0.139  Sum_probs=46.0

Q ss_pred             ceeeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------Cc---------cccccEEEeecC-----eEEEeec
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------EP---------YQTKDIVVMQNG-----SLLFTRV  119 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~~---------~~~~~~~~~~~~-----~l~i~~~  119 (460)
                      +....+..|++++|.|.+.|..- .-.+.|+|  .|+.+      .+         .-..|+.+..+.     .|+|.++
T Consensus         6 sg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL   85 (117)
T d1um5h1           6 SGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSL   85 (117)
T ss_dssp             CCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccccc
Confidence            34455677999999999987532 23588987  23221      11         112355554432     3999999


Q ss_pred             CCCCCeEEEEEEE
Q psy535          120 NQNHQGRYTCTPY  132 (460)
Q Consensus       120 ~~~d~G~y~C~~~  132 (460)
                      +.+|++.|.|...
T Consensus        86 ~~eDtAvYYCAr~   98 (117)
T d1um5h1          86 TSEDSAVYYCARS   98 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999643

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.00025  Score=47.96  Aligned_cols=65  Identities=15%  Similarity=0.155  Sum_probs=38.3

Q ss_pred             ceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccccEEEeecCe------EEEeecCCCCCeEEEEEEEcCCCC
Q psy535           70 FRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTKDIVVMQNGS------LLFTRVNQNHQGRYTCTPYNAHGT  137 (460)
Q Consensus        70 ~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~g~  137 (460)
                      .++.++|.|.+.|. |....|+|.+++..........  ...+++      |.|..-.- +.+.|+|+|.+..+.
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~--~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~~   90 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPA--VLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPASS   90 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC--EEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGGT
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEeccc--ccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCCC
Confidence            46789999999995 5556899988775432211111  223443      44443332 367899999875443

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.27  E-value=0.00054  Score=46.19  Aligned_cols=70  Identities=10%  Similarity=0.219  Sum_probs=46.1

Q ss_pred             cceeeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------C---------ccccccEEEeecC-----eEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------E---------PYQTKDIVVMQNG-----SLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~---------~~~~~~~~~~~~~-----~l~i~~  118 (460)
                      ++....+..|+++.|.|.+.|..- .-.+.|++  .|+.+      .         +.-..|+.+..+.     .|+|.+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~s   85 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccc
Confidence            445566777999999999987542 22478887  22211      1         1112355554432     488999


Q ss_pred             cCCCCCeEEEEEE
Q psy535          119 VNQNHQGRYTCTP  131 (460)
Q Consensus       119 ~~~~d~G~y~C~~  131 (460)
                      ++.+|.+.|.|.-
T Consensus        86 L~~eDtAvYYCAr   98 (116)
T d1mjuh1          86 LTSDDSAVYYCAN   98 (116)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCCceEEEEcc
Confidence            9999999999964

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.26  E-value=0.00062  Score=46.22  Aligned_cols=70  Identities=10%  Similarity=0.099  Sum_probs=45.1

Q ss_pred             cceeeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------C---------ccccccEEEeecC-----eEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------E---------PYQTKDIVVMQNG-----SLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~---------~~~~~~~~~~~~~-----~l~i~~  118 (460)
                      ++....+..|++++|.|.+.|..- ...+.|++  .|+.+      .         +.-..|+.+..+.     .|+|.+
T Consensus         6 qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~   85 (117)
T d1mfah1           6 QSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSS   85 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecc
Confidence            344455677999999999987532 23478887  23211      1         1112244444332     489999


Q ss_pred             cCCCCCeEEEEEE
Q psy535          119 VNQNHQGRYTCTP  131 (460)
Q Consensus       119 ~~~~d~G~y~C~~  131 (460)
                      ++.+|++.|.|.-
T Consensus        86 L~~eDtAvYYCAr   98 (117)
T d1mfah1          86 LTSEDSAVYYCTR   98 (117)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEec
Confidence            9999999999963

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.26  E-value=0.00076  Score=45.89  Aligned_cols=68  Identities=13%  Similarity=0.233  Sum_probs=45.2

Q ss_pred             eeeecceeeEEEEEEEecCCCC--CeEEEee--CCeec--------------CccccccEEEeecC-----eEEEeecCC
Q psy535           65 VQYLPFRLQGVVQCHIKANPTF--QYVTWTK--DKRLL--------------EPYQTKDIVVMQNG-----SLLFTRVNQ  121 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~--~~~~~--------------~~~~~~~~~~~~~~-----~l~i~~~~~  121 (460)
                      ...+..|+++.|.|.+.|..-.  -.+.|+|  .|+.+              .+.-..|+.+..+.     .|+|.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~   88 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTT   88 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccccc
Confidence            3456679999999999986432  2378987  33221              11112355555432     399999999


Q ss_pred             CCCeEEEEEEE
Q psy535          122 NHQGRYTCTPY  132 (460)
Q Consensus       122 ~d~G~y~C~~~  132 (460)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (119)
T d1ncwh1          89 EDTATYYCAGL   99 (119)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEeEe
Confidence            99999999644

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.25  E-value=0.00069  Score=47.02  Aligned_cols=66  Identities=18%  Similarity=0.267  Sum_probs=42.5

Q ss_pred             eeecceeeEEEEEEEecCCCC---CeEEEee--CCeec--------------CccccccEEEeecC-----eEEEeecCC
Q psy535           66 QYLPFRLQGVVQCHIKANPTF---QYVTWTK--DKRLL--------------EPYQTKDIVVMQNG-----SLLFTRVNQ  121 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~~---~~v~W~~--~~~~~--------------~~~~~~~~~~~~~~-----~l~i~~~~~  121 (460)
                      ..+..|++++|.|.+.|..-.   ..+.|++  .|+.+              .+.-..|+.+..+.     .|+|.+++.
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            346679999999999875321   1367986  22211              01112345544432     499999999


Q ss_pred             CCCeEEEEEE
Q psy535          122 NHQGRYTCTP  131 (460)
Q Consensus       122 ~d~G~y~C~~  131 (460)
                      +|++.|.|..
T Consensus        90 eDtAvYyCAr   99 (126)
T d1etzb1          90 SDTATYHCAR   99 (126)
T ss_dssp             GGCEEEEEEE
T ss_pred             cccceEEEEE
Confidence            9999999974

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00013  Score=50.15  Aligned_cols=80  Identities=13%  Similarity=0.163  Sum_probs=46.9

Q ss_pred             CCeeEE-cceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCccccc--cEEE---eecC------eEEEeecCCC
Q psy535           56 PAKVTF-TPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQTK--DIVV---MQNG------SLLFTRVNQN  122 (460)
Q Consensus        56 ~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~--~~~~---~~~~------~l~i~~~~~~  122 (460)
                      +|.+.+ .|....+..++.++|.|.+.+. |....|+|++||..+......  ....   ..++      .|.|..-.-.
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~   83 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK   83 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence            344433 3333345567889999999885 555589999999887532110  0000   1122      2444433333


Q ss_pred             CCeEEEEEEEcCC
Q psy535          123 HQGRYTCTPYNAH  135 (460)
Q Consensus       123 d~G~y~C~~~~~~  135 (460)
                      ....|+|+|.+..
T Consensus        84 ~g~~ytC~V~H~s   96 (108)
T d1ow0a2          84 KGDTFSCMVGHEA   96 (108)
T ss_dssp             HTCCEEEEEECTT
T ss_pred             CCCEEEEEEEeCC
Confidence            4678999998754

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.25  E-value=0.00063  Score=45.41  Aligned_cols=68  Identities=12%  Similarity=0.205  Sum_probs=44.9

Q ss_pred             eeeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------Cc-----------cccccEEEeecC-----eEEEee
Q psy535           64 TVQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------EP-----------YQTKDIVVMQNG-----SLLFTR  118 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~~-----------~~~~~~~~~~~~-----~l~i~~  118 (460)
                      ....+..|++++|.|.+.|..- .-.+.|++  .|+.+      ..           .-..|+.+..+.     .|+|.+
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s   87 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN   87 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence            3345677999999999987532 12488887  23211      11           112355555432     389999


Q ss_pred             cCCCCCeEEEEEE
Q psy535          119 VNQNHQGRYTCTP  131 (460)
Q Consensus       119 ~~~~d~G~y~C~~  131 (460)
                      ++.+|++.|.|.-
T Consensus        88 L~~eDTAvYYCAr  100 (109)
T d2ck0h1          88 LKTEDTGIYYCVR  100 (109)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             CCHhHCEEEEEEE
Confidence            9999999999974

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00022  Score=45.20  Aligned_cols=52  Identities=15%  Similarity=0.364  Sum_probs=38.1

Q ss_pred             ceeeEEEEEEEecCCCCCeEEEeeCCeecCccccccEEEeecCeEEEeecCC-CCCeEEEEEEE
Q psy535           70 FRLQGVVQCHIKANPTFQYVTWTKDKRLLEPYQTKDIVVMQNGSLLFTRVNQ-NHQGRYTCTPY  132 (460)
Q Consensus        70 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~C~~~  132 (460)
                      .|.+|+|+|...+.  . .|.|.+++..+....        +..|.+.+.+. +|+|.|.|...
T Consensus        13 SGTtV~LTCP~~~~--~-~I~Wkkn~~~i~g~~--------~~~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          13 SGTSVELTCPLDSD--E-NLKWEKNGQELPQKH--------DKHLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             ETTEEEEECSSCCC--T-TCEEEETTEEECSCC--------CSEEEEESCCTTTSCEEEEEECS
T ss_pred             eCCEEEEECCCCCC--C-ceEEeeccccCCCCC--------CcEEEEccccccccCcceEEecC
Confidence            48899999987653  2 599999999886321        22477777555 79999999753

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.23  E-value=0.0015  Score=45.19  Aligned_cols=69  Identities=13%  Similarity=0.221  Sum_probs=45.9

Q ss_pred             eeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------Cc---------cccccEEEeecC-----eEEEeecCC
Q psy535           65 VQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------EP---------YQTKDIVVMQNG-----SLLFTRVNQ  121 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~~---------~~~~~~~~~~~~-----~l~i~~~~~  121 (460)
                      ...+..|+++.|.|.+.|..- .-.+.|++  .|+.+      .+         .-..|+.+..+.     .|+|.+++.
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~   88 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS   88 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc
Confidence            344667999999999988542 22488987  22211      11         112455555542     499999999


Q ss_pred             CCCeEEEEEEEc
Q psy535          122 NHQGRYTCTPYN  133 (460)
Q Consensus       122 ~d~G~y~C~~~~  133 (460)
                      +|++.|.|.-..
T Consensus        89 eDTAvYYCAr~~  100 (135)
T d1ieha_          89 EDTAVYYCAKYS  100 (135)
T ss_dssp             SSCEEEEEEEBS
T ss_pred             ccceeeEEEEec
Confidence            999999997543

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.23  E-value=0.00093  Score=45.53  Aligned_cols=63  Identities=22%  Similarity=0.407  Sum_probs=42.7

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--------------CcccEEEe----cceEEEccccceeceEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--------------PKNRVKIV----GGNITIEGLRRVDFGYYEC  224 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C  224 (460)
                      .+..|++++|.|..   .......+.|++......              ...++...    ...|.|.++..+|++.|.|
T Consensus        12 ~v~~G~~vtL~C~~---~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (107)
T d1j1pl_          12 SVTPGNSVSLSCRA---SQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFC   88 (107)
T ss_dssp             EECTTCCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EECCCCCEEEEEEe---cCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEEE
Confidence            57889999999987   344455789987432111              11222221    2269999999999999999


Q ss_pred             EEec
Q psy535          225 VVSN  228 (460)
Q Consensus       225 ~a~n  228 (460)
                      .+.+
T Consensus        89 a~~~   92 (107)
T d1j1pl_          89 QQAN   92 (107)
T ss_dssp             EECS
T ss_pred             EcCC
Confidence            7653

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.22  E-value=0.00019  Score=50.88  Aligned_cols=80  Identities=10%  Similarity=0.171  Sum_probs=46.9

Q ss_pred             CCeeEE-cceeeeecceeeEEEEEEEecC-CCCCeEEEeeCCeecCcccc--cc----------EEEeecCeEEEeecCC
Q psy535           56 PAKVTF-TPTVQYLPFRLQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQT--KD----------IVVMQNGSLLFTRVNQ  121 (460)
Q Consensus        56 ~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~--~~----------~~~~~~~~l~i~~~~~  121 (460)
                      ||.+.+ .|....+..+..++|.|.+.+. |....|+|++||..+.....  ..          -.....+.|.|....-
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W   83 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFW   83 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHH
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHh
Confidence            565544 3333334456779999999985 55567999999987742110  00          0001112355554443


Q ss_pred             CCCe-EEEEEEEcCC
Q psy535          122 NHQG-RYTCTPYNAH  135 (460)
Q Consensus       122 ~d~G-~y~C~~~~~~  135 (460)
                      .+.| .|+|++.+..
T Consensus        84 ~~~g~~ytC~V~H~~   98 (127)
T d1ogae2          84 QNPRNHFRCQVQFYG   98 (127)
T ss_dssp             TCTTCEEEEEEEECC
T ss_pred             CCCCCEEEEEEEECC
Confidence            4545 6999998754

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.22  E-value=0.00092  Score=45.39  Aligned_cols=69  Identities=14%  Similarity=0.250  Sum_probs=44.6

Q ss_pred             eeeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------C---------ccccccEEEeecC-----eEEEeecC
Q psy535           64 TVQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------E---------PYQTKDIVVMQNG-----SLLFTRVN  120 (460)
Q Consensus        64 ~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~---------~~~~~~~~~~~~~-----~l~i~~~~  120 (460)
                      ....+..|+++.|.|.+.|..- .-.+.|+|  .|+.+      .         +.-..++.+..+.     .|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~   87 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence            3455667999999999988532 23588887  23221      1         1112344444332     48999999


Q ss_pred             CCCCeEEEEEEE
Q psy535          121 QNHQGRYTCTPY  132 (460)
Q Consensus       121 ~~d~G~y~C~~~  132 (460)
                      .+|++.|.|.-.
T Consensus        88 ~eDtAvYYCAr~   99 (118)
T d1ct8b1          88 TEDSAIYYCARY   99 (118)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeee
Confidence            999999999653

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.22  E-value=0.0013  Score=45.01  Aligned_cols=68  Identities=15%  Similarity=0.270  Sum_probs=44.7

Q ss_pred             eeeecceeeEEEEEEEecCC-CCCeEEEee--CCeec------Cc---------cccccEEEeecC-----eEEEeecCC
Q psy535           65 VQYLPFRLQGVVQCHIKANP-TFQYVTWTK--DKRLL------EP---------YQTKDIVVMQNG-----SLLFTRVNQ  121 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~--~~~~~------~~---------~~~~~~~~~~~~-----~l~i~~~~~  121 (460)
                      ...+..|++++|.|.+.|.. ....+.|++  .|+.+      ..         .-..|+.+..+.     .|+|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~   88 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS   88 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC
Confidence            34566799999999998753 223588987  23321      11         012345444332     399999999


Q ss_pred             CCCeEEEEEEE
Q psy535          122 NHQGRYTCTPY  132 (460)
Q Consensus       122 ~d~G~y~C~~~  132 (460)
                      +|++.|.|...
T Consensus        89 eDtA~YYCAr~   99 (120)
T d1pg7x1          89 NDSAVYYCARE   99 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEeeec
Confidence            99999999754

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.21  E-value=0.00092  Score=45.23  Aligned_cols=67  Identities=12%  Similarity=0.204  Sum_probs=44.6

Q ss_pred             eeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------C--------ccccccEEEeecC-----eEEEeecCCCC
Q psy535           66 QYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------E--------PYQTKDIVVMQNG-----SLLFTRVNQNH  123 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~--------~~~~~~~~~~~~~-----~l~i~~~~~~d  123 (460)
                      ..+..|+++.|.|.+.|..- .-.+.|++  .|+.+      .        +.-..|+.+..+.     .|+|.+++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eD   89 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeecc
Confidence            44667999999999988532 23588887  22221      1        1112345554432     39999999999


Q ss_pred             CeEEEEEEE
Q psy535          124 QGRYTCTPY  132 (460)
Q Consensus       124 ~G~y~C~~~  132 (460)
                      ++.|.|.-.
T Consensus        90 TAvYYCAr~   98 (116)
T d1a2yb_          90 TARYYCARE   98 (116)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEEEe
Confidence            999999743

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.21  E-value=0.00037  Score=47.41  Aligned_cols=63  Identities=21%  Similarity=0.389  Sum_probs=42.6

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCC--ccC------------CcccEEEe----cceEEEccccceeceEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDG--VAL------------PKNRVKIV----GGNITIEGLRRVDFGYYEC  224 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~--~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C  224 (460)
                      .+..|++++|.|..   .......+.|++...  .+.            ...+....    ...|.|.+++.+|++.|.|
T Consensus        12 ~~~~G~svtl~C~~---s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   88 (107)
T d1c5cl1          12 SASLGERVSLTCRT---SQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYC   88 (107)
T ss_dssp             EECTTCCEEEEEEE---SSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             EECCCCCEEEEEEe---CCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEE
Confidence            57789999999997   445555689997321  110            01112111    2269999999999999999


Q ss_pred             EEec
Q psy535          225 VVSN  228 (460)
Q Consensus       225 ~a~n  228 (460)
                      .+.+
T Consensus        89 a~~~   92 (107)
T d1c5cl1          89 LQYA   92 (107)
T ss_dssp             EECS
T ss_pred             ecCc
Confidence            7654

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.20  E-value=0.0011  Score=46.37  Aligned_cols=68  Identities=16%  Similarity=0.293  Sum_probs=44.5

Q ss_pred             eeecceeeEEEEEEEecCCCC---CeEEEee--CCeec--------------CccccccEEEeecC-----eEEEeecCC
Q psy535           66 QYLPFRLQGVVQCHIKANPTF---QYVTWTK--DKRLL--------------EPYQTKDIVVMQNG-----SLLFTRVNQ  121 (460)
Q Consensus        66 ~~~~~g~~~~l~C~~~~~~~~---~~v~W~~--~~~~~--------------~~~~~~~~~~~~~~-----~l~i~~~~~  121 (460)
                      ..+..|++++|.|.+.|..-.   ..+.|++  .|+.+              .+.-..|+.+..+.     .|+|.+++.
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP   89 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence            446679999999999875421   2488997  22211              01112355554432     399999999


Q ss_pred             CCCeEEEEEEEc
Q psy535          122 NHQGRYTCTPYN  133 (460)
Q Consensus       122 ~d~G~y~C~~~~  133 (460)
                      +|++.|.|....
T Consensus        90 eDtAvYYCAr~~  101 (132)
T d1tjgh1          90 VDTATYFCAHRR  101 (132)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEEEec
Confidence            999999997653

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00044  Score=46.22  Aligned_cols=73  Identities=11%  Similarity=0.236  Sum_probs=46.6

Q ss_pred             CCceeeCCCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCCcccE-E-----EecceEEEccccceeceEEEE
Q psy535          151 PPAFTIKPEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALPKNRV-K-----IVGGNITIEGLRRVDFGYYEC  224 (460)
Q Consensus       151 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~~~~~-~-----~~~~~l~i~~~~~~~~g~y~C  224 (460)
                      .|.+...|..  .+..|++|+|.|..    ......+.+++++......... .     .....+.|.++...|.|.|+|
T Consensus         4 kPsLsa~P~~--~v~~G~~VTL~C~~----~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C   77 (98)
T d1ugna2           4 KPTLSAQPSP--VVNSGGNVTLQCDS----QVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRC   77 (98)
T ss_dssp             CCEEEEESCS--EEETTCCEEEEEEC----SSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEE
T ss_pred             CCEEEeeCCC--ccCCCCcEEEEeCC----CCCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEE
Confidence            4666667765  47899999999985    3445577777744322211100 0     012369999999999999999


Q ss_pred             EEecc
Q psy535          225 VVSNE  229 (460)
Q Consensus       225 ~a~n~  229 (460)
                      .-...
T Consensus        78 ~y~~~   82 (98)
T d1ugna2          78 YAYDS   82 (98)
T ss_dssp             EEECT
T ss_pred             eeEcC
Confidence            87543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.19  E-value=0.001  Score=44.15  Aligned_cols=64  Identities=11%  Similarity=0.203  Sum_probs=37.9

Q ss_pred             eeeEEEEEEEecCCC-CCeEEEee--CCeec------C---------ccccccEEEeecC-----eEEEeecCCCCCeEE
Q psy535           71 RLQGVVQCHIKANPT-FQYVTWTK--DKRLL------E---------PYQTKDIVVMQNG-----SLLFTRVNQNHQGRY  127 (460)
Q Consensus        71 g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~---------~~~~~~~~~~~~~-----~l~i~~~~~~d~G~y  127 (460)
                      |++++|.|.+.|..- .-.+.|+|  .|+.+      .         +.-..|+.+..+.     .|+|.+++.+|++.|
T Consensus         2 G~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAvY   81 (103)
T d1oari_           2 GASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVY   81 (103)
T ss_dssp             CCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSEE
T ss_pred             CCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEEE
Confidence            789999999988532 23588997  23221      1         1112455554432     499999999999999


Q ss_pred             EEEEEcC
Q psy535          128 TCTPYNA  134 (460)
Q Consensus       128 ~C~~~~~  134 (460)
                      .|.....
T Consensus        82 YCAr~~~   88 (103)
T d1oari_          82 YCARMWY   88 (103)
T ss_dssp             EEEEEEC
T ss_pred             EeEEECC
Confidence            9975443

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.19  E-value=0.0011  Score=45.21  Aligned_cols=63  Identities=22%  Similarity=0.309  Sum_probs=42.3

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc-C-------------CcccEEEe----cceEEEccccceeceEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA-L-------------PKNRVKIV----GGNITIEGLRRVDFGYYEC  224 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~-~-------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C  224 (460)
                      .+..|++++|.|..   .......+.|++..... .             ...+....    ...|.|.++..+|++.|.|
T Consensus        12 ~v~~G~svtl~C~~---s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyC   88 (107)
T d1kcvl1          12 GMSVGEAVTLNCKA---SENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYC   88 (107)
T ss_dssp             EEETTCCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             eECCCCCEEEEEEe---cCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEEE
Confidence            57789999999997   34444579999742111 0             01122221    2259999999999999999


Q ss_pred             EEec
Q psy535          225 VVSN  228 (460)
Q Consensus       225 ~a~n  228 (460)
                      .+..
T Consensus        89 a~~~   92 (107)
T d1kcvl1          89 GQSY   92 (107)
T ss_dssp             EECS
T ss_pred             EecC
Confidence            8653

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.17  E-value=0.0015  Score=45.08  Aligned_cols=71  Identities=11%  Similarity=0.148  Sum_probs=46.6

Q ss_pred             ceeeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------Cc---------cccccEEEeecC-----eEEEeec
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------EP---------YQTKDIVVMQNG-----SLLFTRV  119 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~~---------~~~~~~~~~~~~-----~l~i~~~  119 (460)
                      +....+..|+++.|.|.+.|..- .-.+.|+|  .|+.+      ..         .-..|+.+..+.     .|+|.++
T Consensus         6 sg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L   85 (130)
T d1rhhb1           6 SGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNL   85 (130)
T ss_dssp             CCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeecc
Confidence            34455677999999999987532 23588887  23211      11         112355555432     3899999


Q ss_pred             CCCCCeEEEEEEEc
Q psy535          120 NQNHQGRYTCTPYN  133 (460)
Q Consensus       120 ~~~d~G~y~C~~~~  133 (460)
                      +.+|++.|.|....
T Consensus        86 ~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          86 RSDDTAVYYCARDF   99 (130)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCCcEEEEEEeec
Confidence            99999999997543

>d1xzwa1 b.1.12.1 (A:1-119) Purple acid phosphatase, N-terminal domain {Sweet potato (Ipomoea batatas) [TaxId: 4120]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Purple acid phosphatase, N-terminal domain
family: Purple acid phosphatase, N-terminal domain
domain: Purple acid phosphatase, N-terminal domain
species: Sweet potato (Ipomoea batatas) [TaxId: 4120]

Probab=97.17  E-value=0.0021  Score=44.51  Aligned_cols=92  Identities=24%  Similarity=0.338  Sum_probs=52.1

Q ss_pred             CCCcceEEEeec---ceEEEEecCCCCCCccceEEEEEEEEcCC-eeeeccccCCCCcccccccceecCceeeeeeccCC
Q psy535          344 GPPRNVSVTEVN---NGFVISWQPPLERASLIQYYLIKYRTDGS-WKTLNKGQIRPEENSYLGEYREQGNKDWLPIPVTP  419 (460)
Q Consensus       344 ~~p~~~~~~~~~---~~v~l~W~~~~~~~~~i~~y~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (460)
                      .+|..+.+....   +++.|+|.-..+..+.   -.|+|-.... ......+    ....+            .......
T Consensus        23 ~~P~qvhl~~~~~~~tsm~VsW~T~~~~~~~---~~V~yG~~~~~~~~~a~g----~s~~~------------~~~~~~~   83 (119)
T d1xzwa1          23 NAPQQVHITQGDYEGRGVIISWTTPYDKAGA---NKVFYWSENSKSQKRAMG----TVVTY------------KYYNYTS   83 (119)
T ss_dssp             TCCEEEEEEECSSSSSCEEEEEEESSCCTTT---TEEEEEETTCCCCEEEEC----EEECC------------EETTEEC
T ss_pred             CCCCEEEEEecCCCCCEEEEEEECCCCCCCC---CEEEEcCCCCCCccEEEE----EEEEe------------ecccccC
Confidence            578777777543   4899999975432221   1556654332 1111000    00000            0000111


Q ss_pred             CCcceEEECCCCcCceEEEEEEEeecCCCCCCCceeEeecC
Q psy535          420 PGSTQITINRLTPATTYEFQVVGKNELGDGMLSNIVVVKTK  460 (460)
Q Consensus       420 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~s~~s~~~~~~T~  460 (460)
                      .-.++..|.+|+|++.|.+||      |.+.+|+...|+|.
T Consensus        84 ~~~H~v~LtgL~P~T~Y~YrV------G~~~~S~~~~F~T~  118 (119)
T d1xzwa1          84 AFIHHCTIKDLEYDTKYYYRL------GFGDAKRQFWFVTP  118 (119)
T ss_dssp             CEEEEEEECCCCTTCEEEEEE------CCGGGCEEEEEECC
T ss_pred             CeEEEEEECCCCCCCEEEEEE------CCCCccceEEEeCC
Confidence            123578899999999999998      34457889999984

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.16  E-value=0.00065  Score=47.22  Aligned_cols=63  Identities=22%  Similarity=0.364  Sum_probs=42.4

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--------------CcccEEE--ec--ceEEEccccceeceEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--------------PKNRVKI--VG--GNITIEGLRRVDFGYYEC  224 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--------------~~~~~~~--~~--~~l~i~~~~~~~~g~y~C  224 (460)
                      .+..|+.++|.|..   .+.....+.|++......              ...++..  ..  ..|.|.++...|++.|.|
T Consensus        12 ~~~~G~svtl~C~~---s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyC   88 (119)
T d1f3rb2          12 SASVGDRVTLSCKG---SQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFC   88 (119)
T ss_dssp             CCCTTCCEEEEEEC---SSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEE
T ss_pred             EECCCCCEEEEEEe---CCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEe
Confidence            67889999999987   444445689997421110              0112221  11  259999999999999999


Q ss_pred             EEec
Q psy535          225 VVSN  228 (460)
Q Consensus       225 ~a~n  228 (460)
                      .+..
T Consensus        89 a~~~   92 (119)
T d1f3rb2          89 YQYN   92 (119)
T ss_dssp             EEES
T ss_pred             eccC
Confidence            8754

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.16  E-value=0.00092  Score=46.00  Aligned_cols=68  Identities=15%  Similarity=0.211  Sum_probs=44.9

Q ss_pred             eeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------C---------ccccccEEEeecC-----eEEEeecCC
Q psy535           65 VQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------E---------PYQTKDIVVMQNG-----SLLFTRVNQ  121 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~---------~~~~~~~~~~~~~-----~l~i~~~~~  121 (460)
                      ...+..|+++.|.|.+.|..- .-.+.|++  .|+.+      .         +.-..|+.+..+.     .|+|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~   88 (127)
T d2fx7h1           9 AEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRP   88 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCc
Confidence            344667999999999987532 22488886  23211      1         1112455555442     399999999


Q ss_pred             CCCeEEEEEEE
Q psy535          122 NHQGRYTCTPY  132 (460)
Q Consensus       122 ~d~G~y~C~~~  132 (460)
                      +|++.|.|.-.
T Consensus        89 eDTavYYCAR~   99 (127)
T d2fx7h1          89 EDTAVYYCARE   99 (127)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEEeec
Confidence            99999999754

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.16  E-value=0.00063  Score=45.33  Aligned_cols=63  Identities=17%  Similarity=0.183  Sum_probs=39.5

Q ss_pred             eeEEEEEEEecC-CCCCeEEEeeCCeecCccc-----cccEEEeecCeEEE---eecCCCCCeEEEEEEEcC
Q psy535           72 LQGVVQCHIKAN-PTFQYVTWTKDKRLLEPYQ-----TKDIVVMQNGSLLF---TRVNQNHQGRYTCTPYNA  134 (460)
Q Consensus        72 ~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~~~  134 (460)
                      ..++|.|.+.|. |....|+|++||..+....     ........++++.+   ..+...+...|+|.+...
T Consensus        15 ~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~   86 (98)
T d1u58a1          15 GGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGI   86 (98)
T ss_dssp             SCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEG
T ss_pred             CcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeC
Confidence            368999999996 5566799999987653211     11122233444322   234556667899999753

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.15  E-value=0.00095  Score=45.87  Aligned_cols=70  Identities=10%  Similarity=0.219  Sum_probs=46.2

Q ss_pred             cceeeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------Ccc---------ccccEEEeecC-----eEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------EPY---------QTKDIVVMQNG-----SLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~~~---------~~~~~~~~~~~-----~l~i~~  118 (460)
                      ++....+..|+++.|.|.+.|..- .-.+.|++  .|+.+      .+.         -..|+.+..+.     .|+|.+
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~   85 (127)
T d1n0xh1           6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   85 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEc
Confidence            344456777999999999988532 12488887  23221      111         12355555442     389999


Q ss_pred             cCCCCCeEEEEEE
Q psy535          119 VNQNHQGRYTCTP  131 (460)
Q Consensus       119 ~~~~d~G~y~C~~  131 (460)
                      ++.+|++.|.|.-
T Consensus        86 L~~eDtAvYYCAR   98 (127)
T d1n0xh1          86 LRSADTAVYYCAR   98 (127)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCCceEEEEEe
Confidence            9999999999963

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.15  E-value=0.0013  Score=44.58  Aligned_cols=67  Identities=22%  Similarity=0.431  Sum_probs=44.3

Q ss_pred             CCcccccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--------------CcccEEEe----cceEEEccccceec
Q psy535          158 PEAMYQRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--------------PKNRVKIV----GGNITIEGLRRVDF  219 (460)
Q Consensus       158 ~~~~~~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--------------~~~~~~~~----~~~l~i~~~~~~~~  219 (460)
                      |... .+..|+.++|.|..   .......+.|++......              ...++...    ...|.|.+++.+|+
T Consensus         7 P~sl-~~~~G~svtL~C~~---~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1op3k1           7 PSTL-SASVGDTITITCRA---SQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDF   82 (106)
T ss_dssp             CSEE-EECTTCEEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             CCeE-EECCCCCEEEEEEe---CCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCC
Confidence            4444 67899999999987   444455688987421110              01122221    12599999999999


Q ss_pred             eEEEEEEec
Q psy535          220 GYYECVVSN  228 (460)
Q Consensus       220 g~y~C~a~n  228 (460)
                      +.|.|.+..
T Consensus        83 a~YyCa~~~   91 (106)
T d1op3k1          83 ATYHCQHYA   91 (106)
T ss_dssp             SEEEEEEEC
T ss_pred             CcEeeeeCC
Confidence            999998653

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.15  E-value=0.0017  Score=44.06  Aligned_cols=69  Identities=10%  Similarity=0.247  Sum_probs=45.7

Q ss_pred             eeeecceeeEEEEEEEecCCC-CCeEEEee--CCee------cCc---------cccccEEEeecC-----eEEEeecCC
Q psy535           65 VQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRL------LEP---------YQTKDIVVMQNG-----SLLFTRVNQ  121 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~------~~~---------~~~~~~~~~~~~-----~l~i~~~~~  121 (460)
                      ...+..|+++.|.|.+.|..- .-.+.|+|  .|+.      +..         .-..|+.+..+.     .|+|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            345667999999999988642 12478886  2321      111         112355555443     399999999


Q ss_pred             CCCeEEEEEEEc
Q psy535          122 NHQGRYTCTPYN  133 (460)
Q Consensus       122 ~d~G~y~C~~~~  133 (460)
                      +|++.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (118)
T d2fbjh1          89 EDTALYYCARLH  100 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEeeEec
Confidence            999999997654

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.15  E-value=0.00081  Score=46.42  Aligned_cols=71  Identities=8%  Similarity=0.183  Sum_probs=46.0

Q ss_pred             cceeeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------C---------ccccccEEEeecC-----eEEEee
Q psy535           62 TPTVQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------E---------PYQTKDIVVMQNG-----SLLFTR  118 (460)
Q Consensus        62 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~---------~~~~~~~~~~~~~-----~l~i~~  118 (460)
                      ++....+..|++++|.|.+.|..- .-.+.|++  .|+.+      .         +.-..|+.+..+.     .|+|.+
T Consensus         6 esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~s   85 (125)
T d1rihh1           6 QSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNS   85 (125)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeec
Confidence            344455677999999999987532 12488887  22211      1         1112355554432     389999


Q ss_pred             cCCCCCeEEEEEEE
Q psy535          119 VNQNHQGRYTCTPY  132 (460)
Q Consensus       119 ~~~~d~G~y~C~~~  132 (460)
                      ++.+|++.|.|.-.
T Consensus        86 L~~eDtAvYYCAR~   99 (125)
T d1rihh1          86 LTSEDSAVYYCARE   99 (125)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCcccceEEEEeee
Confidence            99999999999754

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.14  E-value=0.00081  Score=45.28  Aligned_cols=67  Identities=7%  Similarity=0.135  Sum_probs=44.4

Q ss_pred             eeeecceeeEEEEEEEecCCC-CCeEEEee--CCee------cCc---------cccccEEEeecC-----eEEEeecCC
Q psy535           65 VQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRL------LEP---------YQTKDIVVMQNG-----SLLFTRVNQ  121 (460)
Q Consensus        65 ~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~------~~~---------~~~~~~~~~~~~-----~l~i~~~~~  121 (460)
                      ...+..|+++.|.|.+.|..- ...+.|++  .|+.      +..         .-..|+.+..+.     .|+|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~   88 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS   88 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence            345667999999999987532 22478887  2221      111         112355555432     399999999


Q ss_pred             CCCeEEEEEE
Q psy535          122 NHQGRYTCTP  131 (460)
Q Consensus       122 ~d~G~y~C~~  131 (460)
                      +|++.|.|..
T Consensus        89 eDtAvYYCA~   98 (114)
T d1indh1          89 EDTALYFCAS   98 (114)
T ss_dssp             GGCEEEEEEC
T ss_pred             CcccEEEECC
Confidence            9999999964

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.14  E-value=0.0011  Score=43.99  Aligned_cols=59  Identities=17%  Similarity=0.290  Sum_probs=39.9

Q ss_pred             CCeEEEEeeeeccCCCCCCeeEEEcCCCccC-------------CcccEEEe------cceEEEccccceeceEEEEEEe
Q psy535          167 GESVDMHCEAQEAEGTQKPTITWQRRDGVAL-------------PKNRVKIV------GGNITIEGLRRVDFGYYECVVS  227 (460)
Q Consensus       167 g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~-------------~~~~~~~~------~~~l~i~~~~~~~~g~y~C~a~  227 (460)
                      |+.++|.|..   .......+.|++......             ...++...      ..+|.|.+++.+|+|.|.|.+.
T Consensus         1 G~~vtl~C~~---~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~   77 (94)
T d2gj6d1           1 GAIASLNCTY---SDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVT   77 (94)
T ss_dssp             TSCEEEEEEE---CCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CccEEEEEEE---ccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEe
Confidence            7889999998   455566899987332111             11122211      1259999999999999999876


Q ss_pred             c
Q psy535          228 N  228 (460)
Q Consensus       228 n  228 (460)
                      .
T Consensus        78 ~   78 (94)
T d2gj6d1          78 T   78 (94)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.13  E-value=0.0015  Score=44.69  Aligned_cols=70  Identities=16%  Similarity=0.330  Sum_probs=45.6

Q ss_pred             ceeeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------Cc---------cccccEEEeecC-----eEEEeec
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------EP---------YQTKDIVVMQNG-----SLLFTRV  119 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~~---------~~~~~~~~~~~~-----~l~i~~~  119 (460)
                      +....+..|++++|.|.+.|..- ...+.|++  .|+.+      ..         .-..|+.+..+.     .|+|.++
T Consensus         7 sg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L   86 (121)
T d1j05b_           7 SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSL   86 (121)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeeccccc
Confidence            34455777999999999987531 23588987  33221      11         112355554322     3999999


Q ss_pred             CCCCCeEEEEEEE
Q psy535          120 NQNHQGRYTCTPY  132 (460)
Q Consensus       120 ~~~d~G~y~C~~~  132 (460)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (121)
T d1j05b_          87 TSEDTAVYYCAPF   99 (121)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CcCcceEEEeEee
Confidence            9999999999754

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.13  E-value=0.00092  Score=45.47  Aligned_cols=69  Identities=10%  Similarity=0.206  Sum_probs=44.9

Q ss_pred             ceeeeecceeeEEEEEEEecCCC-CCeEEEee--CCeec------Ccc---------ccccEEEeecC-----eEEEeec
Q psy535           63 PTVQYLPFRLQGVVQCHIKANPT-FQYVTWTK--DKRLL------EPY---------QTKDIVVMQNG-----SLLFTRV  119 (460)
Q Consensus        63 ~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~--~~~~~------~~~---------~~~~~~~~~~~-----~l~i~~~  119 (460)
                      +....+..|+++.|.|.+.|..- .-.+.|++  .|+.+      ...         -..|+.+..+.     .|+|.++
T Consensus         7 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL   86 (119)
T d1eapb1           7 SGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSL   86 (119)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecc
Confidence            33445667999999999988642 22488987  23221      111         12345454332     4999999


Q ss_pred             CCCCCeEEEEEE
Q psy535          120 NQNHQGRYTCTP  131 (460)
Q Consensus       120 ~~~d~G~y~C~~  131 (460)
                      +.+|++.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (119)
T d1eapb1          87 TSEDSAVYFCKR   98 (119)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             cCCcceEEEEEE
Confidence            999999999964

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.13  E-value=0.0012  Score=44.92  Aligned_cols=63  Identities=24%  Similarity=0.402  Sum_probs=42.5

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCcc-C-------------CcccEEEe----cceEEEccccceeceEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVA-L-------------PKNRVKIV----GGNITIEGLRRVDFGYYEC  224 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~-~-------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C  224 (460)
                      .+..|+.++|.|..   .......+.|++..... +             ...+....    ...|.|.++..+|++.|.|
T Consensus        12 ~~~~G~svtL~C~~---s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~YyC   88 (107)
T d1tjgl1          12 SASVGDRITITCRA---SQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYC   88 (107)
T ss_dssp             EECTTCCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             EECCCCCEEEEEEE---CCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEEE
Confidence            57789999999998   44445678898742211 1             11122222    1259999999999999999


Q ss_pred             EEec
Q psy535          225 VVSN  228 (460)
Q Consensus       225 ~a~n  228 (460)
                      .+.+
T Consensus        89 a~~~   92 (107)
T d1tjgl1          89 QQLH   92 (107)
T ss_dssp             EECS
T ss_pred             EECc
Confidence            7653

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.12  E-value=0.0015  Score=44.36  Aligned_cols=62  Identities=19%  Similarity=0.298  Sum_probs=42.3

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccC--------------CcccEEEe----cceEEEccccceeceEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVAL--------------PKNRVKIV----GGNITIEGLRRVDFGYYEC  224 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~--------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C  224 (460)
                      .+..|+.++|.|..   .+.....+.|++......              ...++...    ...|.|.+++.+|++.|.|
T Consensus        11 ~~~~G~svtL~C~~---s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyC   87 (106)
T d1lk3l1          11 TVSPGEKLTISCKA---SESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFC   87 (106)
T ss_dssp             EECTTSCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EECCCCCEEEEEEe---CCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccc
Confidence            67889999999998   444456789987421110              01122221    1269999999999999999


Q ss_pred             EEe
Q psy535          225 VVS  227 (460)
Q Consensus       225 ~a~  227 (460)
                      .+.
T Consensus        88 a~~   90 (106)
T d1lk3l1          88 QQS   90 (106)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            754

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00043  Score=47.50  Aligned_cols=36  Identities=28%  Similarity=0.535  Sum_probs=27.7

Q ss_pred             cccceEEEeeC---C--eEEEeecCCCCCeeEEEEEEeCCC
Q psy535            7 SLETRVVIKKD---G--TLVINPVGSDDSGLYMCEVSNGIG   42 (460)
Q Consensus         7 ~~~~r~~~~~~---~--~L~i~~~~~~d~G~Y~C~~~~~~~   42 (460)
                      ...+|+.+..+   +  +|.|.+++++|+|.|.|.+.....
T Consensus        54 ~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~C~v~~~~~   94 (108)
T d1hkfa_          54 AWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSD   94 (108)
T ss_dssp             BCSTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECTTT
T ss_pred             ceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEEEEEEecCCC
Confidence            34567776543   2  899999999999999999885443

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.11  E-value=0.0015  Score=44.41  Aligned_cols=63  Identities=19%  Similarity=0.355  Sum_probs=42.2

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCC--ccC------------CcccEEEe----cceEEEccccceeceEEEE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDG--VAL------------PKNRVKIV----GGNITIEGLRRVDFGYYEC  224 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~--~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C  224 (460)
                      .+..|+.++|.|..   .......+.|++...  .+.            ...++...    ...|.|.+++.+|++.|.|
T Consensus        12 ~~~~G~svtl~C~~---s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyC   88 (107)
T d1mexl1          12 STSLGNRVSVTCKA---SQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFC   88 (107)
T ss_dssp             EECTTSCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             EECCCCCEEEEEEe---CCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEE
Confidence            57889999999987   333345689997321  110            11233322    1259999999999999999


Q ss_pred             EEec
Q psy535          225 VVSN  228 (460)
Q Consensus       225 ~a~n  228 (460)
                      .+..
T Consensus        89 a~~~   92 (107)
T d1mexl1          89 QQYN   92 (107)
T ss_dssp             EECS
T ss_pred             eECC
Confidence            8653

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.11  E-value=0.00069  Score=47.00  Aligned_cols=63  Identities=16%  Similarity=0.219  Sum_probs=41.5

Q ss_pred             ccCCCCeEEEEeeeeccCCCCCCeeEEEcCCCccCC---------------c--ccEEEe----cceEEEccccceeceE
Q psy535          163 QRKVGESVDMHCEAQEAEGTQKPTITWQRRDGVALP---------------K--NRVKIV----GGNITIEGLRRVDFGY  221 (460)
Q Consensus       163 ~~~~g~~~~l~C~~~~~~~~p~~~~~W~~~~~~~~~---------------~--~~~~~~----~~~l~i~~~~~~~~g~  221 (460)
                      .+..|++++|.|...   ......+.|++......+               .  .+....    ...|.|.++..+|+|.
T Consensus        11 ~v~~G~svtl~C~~~---~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (115)
T d1i9ea_          11 TVSEGASLQLRCKYS---YSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAV   87 (115)
T ss_dssp             EEETTSCEEECCEEE---CSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEE
T ss_pred             EECCCCCEEEEEEEc---CCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccce
Confidence            678999999999973   444557788863211100               0  011111    1259999999999999


Q ss_pred             EEEEEec
Q psy535          222 YECVVSN  228 (460)
Q Consensus       222 y~C~a~n  228 (460)
                      |.|.+..
T Consensus        88 YyCa~~~   94 (115)
T d1i9ea_          88 YFCAVSG   94 (115)
T ss_dssp             EEEEEEE
T ss_pred             ecccccC
Confidence            9998753