Psyllid ID: psy5387

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MKKKAHKKCTNIVDASINPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRKNTNGSGNSRNVFSEERSSTLDSFTSDYKDLETFQSLSYFLFRPQKCQMKKKMSVSTERREFRNNMLFKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALANITQRLK
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHccccccccccccHHHHcccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEEEcccccccccccEEEEcccccEEEcccccEEEEEcccEEEEEEEEcccEEEEEccccccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHcccccHHccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccHccccHHHcccccccccccccccccccccccccccccccEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEEcccEcEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mkkkahkkctnivdasinptmkkkahkKCTNIVDASIKcllnspmlqrrrkntngsgnsrnvfseersstldsftsdykdletfqslsyflfrpqkcqmkkkmsVSTERREFRNNMLFKKEFIMQnkapmwnetsQVYQLDFGGRVTQESAKNFQVefrgkqvmqfgridynaytldfqypFSAVQAFAVALANITQRLK
Flexible Loop (DISEMBL)
mkkkahkkctnivdasinptmkkkaHKKCTNIVDASikcllnspmlqrrrkntngsgnsrnvfseersstldsFTSDYKDLETFQSLSyflfrpqkcqmkkkmsvsterrefrnnmLFKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALANITQRLK
Low Complexity Region (SEG)
MKKKAHKKCTNIVDASINPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRKNTNGSGNSRNVFSEERSSTLDSFTSDYKDLETFQSLSYFLFRPQKCQMKKKMSVSTERREFRNNMLFKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALANITQRLK
Disordered region (IsUnstruct)
*************************HKKCTNIVDASIKCLLN***********************************YKDLETFQSLSYFLFRPQKC**************FRNNMLFKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALANIT****
Disordered Region (DISOPRED)
************************************************************************************************************************EFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALANITQRL*
Disordered Region (DISEMBL)
*********TNIVDASINPT********CTNIVDASIKCLLNSPMLQRRRKNTNGSGNSRN***********SFTSDYKDLETFQSLSYFLFRPQK*************REFRNNMLFKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALANITQRLK
Disordered Region (DISPRO)
**********************************************************************************************************************KKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALANITQ***
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKKAHKKCTNIVDASINPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRKNTNGSGNSRNVFSEERSSTLDSFTSDYKDLETFQSLSYFLFRPQKCQMKKKMSVSTERREFRNNMLFKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALANITQRLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q9JIL5	1547	Tubby-related protein 4 O	yes	N/A	0.955	0.123	0.414	3e-37
Q9NRJ4	1543	Tubby-related protein 4 O	yes	N/A	0.975	0.126	0.413	6e-35
Q09306	426	Tubby protein homolog 1 O	no	N/A	0.385	0.180	0.5	3e-17
A8WN62	424	Tubby protein homolog 1 O	N/A	N/A	0.385	0.181	0.475	1e-16
O88808	505	Tubby protein homolog OS=	no	N/A	0.375	0.148	0.487	1e-16
P50586	505	Tubby protein OS=Mus musc	no	N/A	0.375	0.148	0.487	1e-16
Q9Z273	543	Tubby-related protein 1 O	no	N/A	0.38	0.139	0.493	2e-16
P50607	506	Tubby protein homolog OS=	no	N/A	0.375	0.148	0.487	2e-16
O88413	460	Tubby-related protein 3 O	no	N/A	0.375	0.163	0.487	2e-16
O75386	442	Tubby-related protein 3 O	no	N/A	0.38	0.171	0.481	2e-16

>sp|Q9JIL5|TULP4_MOUSE Tubby-related protein 4 OS=Mus musculus GN=Tulp4 PE=2 SV=1

 Score =  154 bits (390), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 90/217 (41%), Positives = 118/217 (54%), Gaps = 26/217 (11%)

Query: 2    KKKAHKKCTNIVDASINPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRKNTNGSG---- 57
            KK   +  +   + S+    + K  K    + D     L++SP L R +K          
Sbjct: 1339 KKNRKRLDSRAEEGSVQAITEGKVKKDARTLSD--FNSLISSPRLGREKKKVKSQKDQLK 1396

Query: 58   ----NSRNVFSEERSSTLDSFTSDYKDLETFQSLSYFLFRPQKCQMKKKMSVSTERREFR 113
                N  N F +   S  + F S  + +   Q         +  + K+ +  ++E  EF+
Sbjct: 1397 SKKLNKTNEFQDSSESEPELFISGDELMNQSQG------SKKGWKSKRSLRTASELEEFK 1450

Query: 114  NNMLFKKE----------FIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQV 163
                 +KE          ++M NK P+WNE +QVYQLDFGGRVTQESAKNFQ+E  G+QV
Sbjct: 1451 CRKASEKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQV 1510

Query: 164  MQFGRIDYNAYTLDFQYPFSAVQAFAVALANITQRLK 200
            MQFGRID NAY LDFQYPFSAVQAFAVALAN+TQRLK
Sbjct: 1511 MQFGRIDGNAYILDFQYPFSAVQAFAVALANVTQRLK 1547

May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Mus musculus (taxid: 10090)

>sp|Q9NRJ4|TULP4_HUMAN Tubby-related protein 4 OS=Homo sapiens GN=TULP4 PE=2 SV=2

 Score =  147 bits (370), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 88/213 (41%), Positives = 120/213 (56%), Gaps = 18/213 (8%)

Query: 2    KKKAHKKCTNIVDASINPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRKNTNGSGNSRN 61
            KK   +  +   + S+    + K  K+   + D     L++SP L R +K      +   
Sbjct: 1335 KKNRKRLDSRAEEGSVQAITEGKVKKEARTLSD--FNSLISSPHLGREKKKVKSQKD--Q 1390

Query: 62   VFSEERSSTLDSFTSDYKDLETFQSLSYFLFRPQKC----QMKKKMSVSTERREFRNNML 117
            + S++ + T +   S   + E F S    + + Q      + K+    + E  E +    
Sbjct: 1391 LKSKKLNKTNEFQDSSESEPELFISGDELMNQSQGSRKGWKSKRSPRAAGELEEAKCRRA 1450

Query: 118  FKKE----------FIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFG 167
             +KE          ++M NK P+WNE +QVYQLDFGGRVTQESAKNFQ+E  G+QVMQFG
Sbjct: 1451 SEKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQVMQFG 1510

Query: 168  RIDYNAYTLDFQYPFSAVQAFAVALANITQRLK 200
            RID +AY LDFQYPFSAVQAFAVALAN+TQRLK
Sbjct: 1511 RIDGSAYILDFQYPFSAVQAFAVALANVTQRLK 1543

May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Homo sapiens (taxid: 9606)

>sp|Q09306|TUB1_CAEEL Tubby protein homolog 1 OS=Caenorhabditis elegans GN=tub-1 PE=1 SV=3

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 55/80 (68%), Gaps = 3/80 (3%)

Query: 123 IMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ---VMQFGRIDYNAYTLDFQ 179
           I+ NK+P WN+ +Q Y L+F GRVTQ S KNFQ+  +      VMQFGRI  + +T+DF+
Sbjct: 344 ILSNKSPQWNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYIVMQFGRISDDEFTMDFR 403

Query: 180 YPFSAVQAFAVALANITQRL 199
           YP SAVQAF +A+ +   +L
Sbjct: 404 YPLSAVQAFGIAMTSFHGKL 423

Has a role in fat regulation independent of daf-16. Implicated in ciliar sensory function which is required for normal sensory behavior such as chemotaxis. Functions in life span control via the insulin/IGF-1 pathway. Thought to be involved in neuronal trafficking.

Caenorhabditis elegans (taxid: 6239)

>sp|A8WN62|TUB1_CAEBR Tubby protein homolog 1 OS=Caenorhabditis briggsae GN=tub-1 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 3/80 (3%)

Query: 123 IMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ---VMQFGRIDYNAYTLDFQ 179
           ++ NK+P WN+ +Q Y L+F GRVTQ S KNFQ+         VMQFGR+  + +T+DF+
Sbjct: 342 VLTNKSPQWNDETQSYVLNFHGRVTQASVKNFQIIHPNSPEYIVMQFGRVSEDEFTMDFR 401

Query: 180 YPFSAVQAFAVALANITQRL 199
           YP SAVQAF +A+ +   +L
Sbjct: 402 YPLSAVQAFGIAMTSFHGKL 421

Has a role in fat regulation independent of daf-16. Implicated in ciliar sensory function which is required for normal sensory behavior such as chemotaxis. Functions in life span control via the insulin/IGF-1 pathway. Thought to be involved in neuronal trafficking.

Caenorhabditis briggsae (taxid: 6238)

>sp|O88808|TUB_RAT Tubby protein homolog OS=Rattus norvegicus GN=Tub PE=2 SV=1

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 5/80 (6%)

Query: 124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ----VMQFGRIDYNAYTLDFQ 179
           +QNK P+WN+ +Q Y L+F GRVTQ S KNFQ+   G      VMQFGR+  + +T+D+ 
Sbjct: 424 LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQI-IHGNDPDYIVMQFGRVAEDVFTMDYN 482

Query: 180 YPFSAVQAFAVALANITQRL 199
           YP  A+QAFA+AL++   +L
Sbjct: 483 YPLCALQAFAIALSSFDSKL 502

Functions in signal transduction from heterotrimeric G protein-coupled receptors. Binds to membranes containing phosphatidylinositol 4,5-bisphosphate. Can bind DNA (in vitro). May contribute to the regulation of transcription in the nucleus. Could be involved in the hypothalamic regulation of body weight (By similarity). Contribute to stimulation of phagocytosis of apoptotic retinal pigment epithelium (RPE) cells and macrophages.

Rattus norvegicus (taxid: 10116)

>sp|P50586|TUB_MOUSE Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 5/80 (6%)

Query: 124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ----VMQFGRIDYNAYTLDFQ 179
           +QNK P+WN+ +Q Y L+F GRVTQ S KNFQ+   G      VMQFGR+  + +T+D+ 
Sbjct: 424 LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQI-IHGNDPDYIVMQFGRVAEDVFTMDYN 482

Query: 180 YPFSAVQAFAVALANITQRL 199
           YP  A+QAFA+AL++   +L
Sbjct: 483 YPLCALQAFAIALSSFDSKL 502

Functions in signal transduction from heterotrimeric G protein-coupled receptors. Binds to membranes containing phosphatidylinositol 4,5-bisphosphate. Can bind DNA (in vitro). May contribute to the regulation of transcription in the nucleus. Could be involved in the hypothalamic regulation of body weight. Contribute to stimulation of phagocytosis of apoptotic retinal pigment epithelium (RPE) cells and macrophages.

Mus musculus (taxid: 10090)

>sp|Q9Z273|TULP1_MOUSE Tubby-related protein 1 OS=Mus musculus GN=Tulp1 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 54/79 (68%), Gaps = 3/79 (3%)

Query: 124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ---VMQFGRIDYNAYTLDFQY 180
           + NK P+WNE S  Y L+F GRVTQ S KNFQ+         V+QFGR+  +A+TLD++Y
Sbjct: 462 LHNKPPIWNEDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRY 521

Query: 181 PFSAVQAFAVALANITQRL 199
           P  A+QAFA+AL++   +L
Sbjct: 522 PLCALQAFAIALSSFDGKL 540

Required for normal development of photoreceptor synapses. Required for normal photoreceptor function and for long-term survival of photoreceptor cells. Interacts with cytoskeleton proteins and may play a role in protein transport in photoreceptor cells. Binds lipids, especially phosphatidylinositol 3-phosphate, phosphatidylinositol 4-phosphate, phosphatidylinositol 5-phosphate, phosphatidylinositol 3,4-bisphosphate, phosphatidylinositol 4,5-bisphosphate, phosphatidylinositol 3,4,5-bisphosphate, phosphatidylserine and phosphatidic acid (in vitro) (By similarity). Contribute to stimulation of phagocytosis of apoptotic retinal pigment epithelium (RPE) cells and macrophages.

Mus musculus (taxid: 10090)

>sp|P50607|TUB_HUMAN Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 SV=1

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 5/80 (6%)

Query: 124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ----VMQFGRIDYNAYTLDFQ 179
           +QNK P+WN+ +Q Y L+F GRVTQ S KNFQ+   G      VMQFGR+  + +T+D+ 
Sbjct: 425 LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQI-IHGNDPDYIVMQFGRVAEDVFTMDYN 483

Query: 180 YPFSAVQAFAVALANITQRL 199
           YP  A+QAFA+AL++   +L
Sbjct: 484 YPLCALQAFAIALSSFDSKL 503

Functions in signal transduction from heterotrimeric G protein-coupled receptors. Binds to membranes containing phosphatidylinositol 4,5-bisphosphate. Can bind DNA (in vitro). May contribute to the regulation of transcription in the nucleus. Could be involved in the hypothalamic regulation of body weight (By similarity). Contribute to stimulation of phagocytosis of apoptotic retinal pigment epithelium (RPE) cells and macrophages.

Homo sapiens (taxid: 9606)

>sp|O88413|TULP3_MOUSE Tubby-related protein 3 OS=Mus musculus GN=Tulp3 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 54/80 (67%), Gaps = 5/80 (6%)

Query: 124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ----VMQFGRIDYNAYTLDFQ 179
           + NKAP+WN+ +Q Y L+F GRVTQ S KNFQ+   G      VMQFGR+  + +TLD+ 
Sbjct: 379 LHNKAPVWNDDTQSYVLNFHGRVTQASVKNFQI-VHGNDPDYIVMQFGRVADDVFTLDYN 437

Query: 180 YPFSAVQAFAVALANITQRL 199
           YP  A+QAFA+ L++   +L
Sbjct: 438 YPLCALQAFAIGLSSFDSKL 457

Probably functions in signal transduction from heterotrimeric G protein-coupled receptors. Binds to phosphorylated inositide lipids (By similarity). Negatively regulates SHH signal transduction.

Mus musculus (taxid: 10090)

>sp|O75386|TULP3_HUMAN Tubby-related protein 3 OS=Homo sapiens GN=TULP3 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 3/79 (3%)

Query: 124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ---VMQFGRIDYNAYTLDFQY 180
           + NKAP+WN  +Q Y L+F GRVTQ S KNFQ+  +      VMQFGR+  + +TLD+ Y
Sbjct: 361 LHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQIVHKNDPDYIVMQFGRVADDVFTLDYNY 420

Query: 181 PFSAVQAFAVALANITQRL 199
           P  AVQAF + L++   +L
Sbjct: 421 PLCAVQAFGIGLSSFDSKL 439

Negatively regulates SHH signal transduction (By similarity). Probably functions in signal transduction from heterotrimeric G protein-coupled receptors. Binds to phosphorylated inositide lipids.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
195053744	1442	GH19263 [Drosophila grimshawi] gi|193895	0.83	0.115	0.515	7e-46
195503729	1362	GE23747 [Drosophila yakuba] gi|194184875	0.84	0.123	0.525	1e-45
195394726	1458	GJ10464 [Drosophila virilis] gi|19414270	0.85	0.116	0.525	1e-45
195113621	1479	GI22014 [Drosophila mojavensis] gi|19391	0.85	0.114	0.528	2e-45
442621419	1430	tusp, isoform G [Drosophila melanogaster	0.85	0.118	0.531	3e-45
195574378	1157	GD21342 [Drosophila simulans] gi|1942010	0.84	0.145	0.520	3e-45
195158347	1446	GL13703 [Drosophila persimilis] gi|19411	0.82	0.113	0.517	3e-45
198450226	1470	GA18988 [Drosophila pseudoobscura pseudo	0.82	0.111	0.517	3e-45
261338795	1291	MIP14568p [Drosophila melanogaster]	0.84	0.130	0.520	4e-45
194745692	1419	GF16293 [Drosophila ananassae] gi|190628	0.84	0.118	0.520	5e-45

>gi|195053744|ref|XP_001993786.1| GH19263 [Drosophila grimshawi] gi|193895656|gb|EDV94522.1| GH19263 [Drosophila grimshawi]

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 102/198 (51%), Positives = 129/198 (65%), Gaps = 32/198 (16%)

Query: 18   NPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRK-------NTNGSGNSRNVFSEERSST 70
            +P   KK  ++ +N   + I+ +LNSP+L RR++       +++  GN  N   EE    
Sbjct: 1262 SPAASKKNKRQQSN---SPIRHILNSPLLNRRQRKKPSIIESSDDEGNQTNGSGEEMGGA 1318

Query: 71   LDSFTSDYKDLETFQSLSYFLFRPQKCQMKKKMSVSTERREFRNN--------MLFKKEF 122
             +     Y+DLETFQ          K Q+++K+    +R +   N           ++EF
Sbjct: 1319 SNGNGKQYRDLETFQ----------KAQLRQKL----KRGKIEPNGSASCAISAPVRREF 1364

Query: 123  IMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPF 182
            +M NKAPMWNE SQVYQLDFGGRVTQESAKNFQ+EFRGKQVMQFGRID NAYTLDFQYPF
Sbjct: 1365 VMHNKAPMWNEMSQVYQLDFGGRVTQESAKNFQIEFRGKQVMQFGRIDGNAYTLDFQYPF 1424

Query: 183  SAVQAFAVALANITQRLK 200
            SA+QAFAVALAN+TQRLK
Sbjct: 1425 SALQAFAVALANVTQRLK 1442

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195503729|ref|XP_002098774.1| GE23747 [Drosophila yakuba] gi|194184875|gb|EDW98486.1| GE23747 [Drosophila yakuba]

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/194 (52%), Positives = 129/194 (66%), Gaps = 26/194 (13%)

Query: 18   NPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRK-------NTNGSGNSRNVFSEERSST 70
            +P   KK  ++ +N   + I+ +LNSP+L RR++       +++  GN  N   EE ++T
Sbjct: 1184 SPAASKKNKRQQSN---SPIRHILNSPLLNRRQRKKQSIIESSDDEGNQTNGSGEESNNT 1240

Query: 71   LDSFTSDYKDLETFQSLSYFLFRPQKCQMKKKMS----VSTERREFRNNMLFKKEFIMQN 126
             +     Y+DLETFQ          K Q+++K+              N    ++EF+M N
Sbjct: 1241 GNG--KQYRDLETFQ----------KAQLRQKLKRGKIEPNGSASCANPAPVRREFVMHN 1288

Query: 127  KAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPFSAVQ 186
            KAPMWNE SQVYQLDFGGRVTQESAKNFQ+EFRGKQVMQFGRID NAYTLDFQYPFSA+Q
Sbjct: 1289 KAPMWNEMSQVYQLDFGGRVTQESAKNFQIEFRGKQVMQFGRIDGNAYTLDFQYPFSALQ 1348

Query: 187  AFAVALANITQRLK 200
            AFAVALAN+TQRLK
Sbjct: 1349 AFAVALANVTQRLK 1362

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195394726|ref|XP_002055993.1| GJ10464 [Drosophila virilis] gi|194142702|gb|EDW59105.1| GJ10464 [Drosophila virilis]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/196 (52%), Positives = 129/196 (65%), Gaps = 26/196 (13%)

Query: 18   NPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRK-------NTNGSGNSRNVFSEERSST 70
            +P   KK  ++ +N   + I+ +LNSP+L RR++       +++  GN  N   EE  ST
Sbjct: 1276 SPAASKKNKRQQSN---SPIRHILNSPLLNRRQRKKPSIIESSDDEGNLTNGSGEEMGST 1332

Query: 71   LDSFTS--DYKDLETFQSLSYFLFRPQKCQMKKKMSVS----TERREFRNNMLFKKEFIM 124
             +   +   Y+DLETFQ          K Q+++K+              N    ++EF+M
Sbjct: 1333 GNGNGNGKQYRDLETFQ----------KAQLRQKLKRGKIEPNGSASCANTAPVRREFVM 1382

Query: 125  QNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPFSA 184
             NKAPMWNE SQVYQLDFGGRVTQESAKNFQ+EFRGKQVMQFGRID NAYTLDFQYPFSA
Sbjct: 1383 HNKAPMWNEMSQVYQLDFGGRVTQESAKNFQIEFRGKQVMQFGRIDGNAYTLDFQYPFSA 1442

Query: 185  VQAFAVALANITQRLK 200
            +QAFAVALAN+TQRLK
Sbjct: 1443 LQAFAVALANVTQRLK 1458

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195113621|ref|XP_002001366.1| GI22014 [Drosophila mojavensis] gi|193917960|gb|EDW16827.1| GI22014 [Drosophila mojavensis]

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 103/195 (52%), Positives = 128/195 (65%), Gaps = 25/195 (12%)

Query: 18   NPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRK-------NTNGSGNSRNVFSEE-RSS 69
            +P   KK  ++ +N   + I+ +LNSP+L RR++       +++  GN  N   EE   S
Sbjct: 1298 SPAASKKNKRQQSN---SPIRHILNSPLLNRRQRKKPSIIESSDDEGNQTNGSGEEMGGS 1354

Query: 70   TLDSFTSDYKDLETFQSLSYFLFRPQKCQMKKKMSVS----TERREFRNNMLFKKEFIMQ 125
            T +     Y+DLETFQ          K Q+++K+              N    ++EF+M 
Sbjct: 1355 TGNGNGKQYRDLETFQ----------KAQLRQKLKRGKIEPNGSASCANPAPVRREFVMH 1404

Query: 126  NKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPFSAV 185
            NKAPMWNE SQVYQLDFGGRVTQESAKNFQ+EFRGKQVMQFGRID NAYTLDFQYPFSA+
Sbjct: 1405 NKAPMWNEMSQVYQLDFGGRVTQESAKNFQIEFRGKQVMQFGRIDGNAYTLDFQYPFSAL 1464

Query: 186  QAFAVALANITQRLK 200
            QAFAVALAN+TQRLK
Sbjct: 1465 QAFAVALANVTQRLK 1479

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442621419|ref|NP_001263015.1| tusp, isoform G [Drosophila melanogaster] gi|440217956|gb|AGB96395.1| tusp, isoform G [Drosophila melanogaster]

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/190 (53%), Positives = 129/190 (67%), Gaps = 20/190 (10%)

Query: 18   NPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRK-------NTNGSGNSRNVFSEERSST 70
            +P   KK  ++ +N   + I+ +LNSP+L RR++       +++  GN  N   EE ++ 
Sbjct: 1254 SPAASKKNKRQQSN---SPIRHILNSPLLNRRQRKKQSIIESSDDEGNQTNGSGEESNNA 1310

Query: 71   LDSFTSDYKDLETFQSLSYFLFRPQKCQMKKKMSVSTERREFRNNMLFKKEFIMQNKAPM 130
             +     Y+DLETFQ       R ++ +++   S S       N    ++EF+M NKAPM
Sbjct: 1311 GNG--KQYRDLETFQKAQ---LRQKRGKIEPNGSASCA-----NPAPVRREFVMHNKAPM 1360

Query: 131  WNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPFSAVQAFAV 190
            WNE SQVYQLDFGGRVTQESAKNFQ+EFRGKQVMQFGRID NAYTLDFQYPFSA+QAFAV
Sbjct: 1361 WNEMSQVYQLDFGGRVTQESAKNFQIEFRGKQVMQFGRIDGNAYTLDFQYPFSALQAFAV 1420

Query: 191  ALANITQRLK 200
            ALAN+TQRLK
Sbjct: 1421 ALANVTQRLK 1430

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195574378|ref|XP_002105166.1| GD21342 [Drosophila simulans] gi|194201093|gb|EDX14669.1| GD21342 [Drosophila simulans]

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/194 (52%), Positives = 128/194 (65%), Gaps = 26/194 (13%)

Query: 18   NPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRK-------NTNGSGNSRNVFSEERSST 70
            +P   KK  ++ +N   + I+ +LNSP+L RR++       +++  GN  N   EE ++ 
Sbjct: 979  SPAASKKNKRQQSN---SPIRHILNSPLLNRRQRKKQSIIESSDDEGNQTNGSGEESNNA 1035

Query: 71   LDSFTSDYKDLETFQSLSYFLFRPQKCQMKKKMSVS----TERREFRNNMLFKKEFIMQN 126
             +     Y+DLETFQ          K Q+++K+              N    ++EF+M N
Sbjct: 1036 GNG--KQYRDLETFQ----------KAQLRQKLKRGKIEPNGSASCANPAPVRREFVMHN 1083

Query: 127  KAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPFSAVQ 186
            KAPMWNE SQVYQLDFGGRVTQESAKNFQ+EFRGKQVMQFGRID NAYTLDFQYPFSA+Q
Sbjct: 1084 KAPMWNEMSQVYQLDFGGRVTQESAKNFQIEFRGKQVMQFGRIDGNAYTLDFQYPFSALQ 1143

Query: 187  AFAVALANITQRLK 200
            AFAVALAN+TQRLK
Sbjct: 1144 AFAVALANVTQRLK 1157

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195158347|ref|XP_002020053.1| GL13703 [Drosophila persimilis] gi|194116822|gb|EDW38865.1| GL13703 [Drosophila persimilis]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/201 (51%), Positives = 127/201 (63%), Gaps = 37/201 (18%)

Query: 18   NPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRK--------------NTNGSGNSRNVF 63
            +P   KK  ++ +N   + I+ +LNSP+L RR++               TNGSG      
Sbjct: 1265 SPAASKKNKRQQSN---SPIRHILNSPLLNRRQRKKPSIIESSDDEGNQTNGSG------ 1315

Query: 64   SEERSSTLDSFTSDYKDLETFQSLSYFLFRPQKCQMKKKMS----VSTERREFRNNMLFK 119
            +EE S+        Y+DLETFQ          K Q+++K+              N    +
Sbjct: 1316 AEESSNNGGGNGKQYRDLETFQ----------KAQLRQKLKRGKIEPNGSASCANPAPVR 1365

Query: 120  KEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQ 179
            +EF+M NKAPMWNE SQVYQLDFGGRVTQESAKNFQ+EFRGKQVMQFGRID NAYTLDFQ
Sbjct: 1366 REFVMHNKAPMWNEMSQVYQLDFGGRVTQESAKNFQIEFRGKQVMQFGRIDGNAYTLDFQ 1425

Query: 180  YPFSAVQAFAVALANITQRLK 200
            YPFSA+QAFAVALAN+TQRLK
Sbjct: 1426 YPFSALQAFAVALANVTQRLK 1446

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198450226|ref|XP_001357890.2| GA18988 [Drosophila pseudoobscura pseudoobscura] gi|198130944|gb|EAL27026.2| GA18988 [Drosophila pseudoobscura pseudoobscura]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/201 (51%), Positives = 127/201 (63%), Gaps = 37/201 (18%)

Query: 18   NPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRK--------------NTNGSGNSRNVF 63
            +P   KK  ++ +N   + I+ +LNSP+L RR++               TNGSG      
Sbjct: 1289 SPAASKKNKRQQSN---SPIRHILNSPLLNRRQRKKPSIIESSDDEGNQTNGSG------ 1339

Query: 64   SEERSSTLDSFTSDYKDLETFQSLSYFLFRPQKCQMKKKMS----VSTERREFRNNMLFK 119
            +EE S+        Y+DLETFQ          K Q+++K+              N    +
Sbjct: 1340 AEESSNNGGGNGKQYRDLETFQ----------KAQLRQKLKRGKIEPNGSASCANPAPVR 1389

Query: 120  KEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQ 179
            +EF+M NKAPMWNE SQVYQLDFGGRVTQESAKNFQ+EFRGKQVMQFGRID NAYTLDFQ
Sbjct: 1390 REFVMHNKAPMWNEMSQVYQLDFGGRVTQESAKNFQIEFRGKQVMQFGRIDGNAYTLDFQ 1449

Query: 180  YPFSAVQAFAVALANITQRLK 200
            YPFSA+QAFAVALAN+TQRLK
Sbjct: 1450 YPFSALQAFAVALANVTQRLK 1470

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|261338795|gb|ACX70079.1| MIP14568p [Drosophila melanogaster]

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 101/194 (52%), Positives = 128/194 (65%), Gaps = 26/194 (13%)

Query: 18   NPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRK-------NTNGSGNSRNVFSEERSST 70
            +P   KK  ++ +N   + I+ +LNSP+L RR++       +++  GN  N   EE ++ 
Sbjct: 1113 SPAASKKNKRQQSN---SPIRHILNSPLLNRRQRKKQSIIESSDDEGNQTNGSGEESNNA 1169

Query: 71   LDSFTSDYKDLETFQSLSYFLFRPQKCQMKKKMSVS----TERREFRNNMLFKKEFIMQN 126
             +     Y+DLETFQ          K Q+++K+              N    ++EF+M N
Sbjct: 1170 GNG--KQYRDLETFQ----------KAQLRQKLKRGKIEPNGSASCANPAPVRREFVMHN 1217

Query: 127  KAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPFSAVQ 186
            KAPMWNE SQVYQLDFGGRVTQESAKNFQ+EFRGKQVMQFGRID NAYTLDFQYPFSA+Q
Sbjct: 1218 KAPMWNEMSQVYQLDFGGRVTQESAKNFQIEFRGKQVMQFGRIDGNAYTLDFQYPFSALQ 1277

Query: 187  AFAVALANITQRLK 200
            AFAVALAN+TQRLK
Sbjct: 1278 AFAVALANVTQRLK 1291

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194745692|ref|XP_001955321.1| GF16293 [Drosophila ananassae] gi|190628358|gb|EDV43882.1| GF16293 [Drosophila ananassae]

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 101/194 (52%), Positives = 128/194 (65%), Gaps = 26/194 (13%)

Query: 18   NPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRK-------NTNGSGNSRNVFSEERSST 70
            +P   KK  ++ +N   + I+ +LNSP+L RR++       +++  GN  N   EE ++ 
Sbjct: 1241 SPAASKKNKRQQSN---SPIRHILNSPLLNRRQRKKQSIIESSDDEGNQTNGSGEESNNA 1297

Query: 71   LDSFTSDYKDLETFQSLSYFLFRPQKCQMKKKMSVS----TERREFRNNMLFKKEFIMQN 126
             +     Y+DLETFQ          K Q+++K+              N    ++EF+M N
Sbjct: 1298 GNG--KQYRDLETFQ----------KAQLRQKLKRGKIEPNGSASCANPAPVRREFVMHN 1345

Query: 127  KAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPFSAVQ 186
            KAPMWNE SQVYQLDFGGRVTQESAKNFQ+EFRGKQVMQFGRID NAYTLDFQYPFSA+Q
Sbjct: 1346 KAPMWNEMSQVYQLDFGGRVTQESAKNFQIEFRGKQVMQFGRIDGNAYTLDFQYPFSALQ 1405

Query: 187  AFAVALANITQRLK 200
            AFAVALAN+TQRLK
Sbjct: 1406 AFAVALANVTQRLK 1419

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
FB|FBgn0039530	1401	Tusp "Tusp" [Drosophila melano	0.86	0.122	0.536	5.9e-41
UNIPROTKB|F1P3I6	771	TULP4 "Uncharacterized protein	0.97	0.251	0.422	1.4e-33
MGI|MGI:1916092	1547	Tulp4 "tubby like protein 4" [	0.97	0.125	0.446	2e-33
UNIPROTKB|F1P9V3	1537	TULP4 "Uncharacterized protein	0.97	0.126	0.441	2.5e-33
UNIPROTKB|J9P1J3	1548	TULP4 "Uncharacterized protein	0.97	0.125	0.441	2.6e-33
UNIPROTKB|E1BH25	1463	TULP4 "Uncharacterized protein	0.97	0.132	0.431	1.3e-32
UNIPROTKB|Q9NRJ4	1543	TULP4 "Tubby-related protein 4	0.97	0.125	0.427	2.7e-31
ZFIN|ZDB-GENE-060503-215	1736	tulp4 "tubby like protein 4" [	0.395	0.045	0.835	1.4e-30
WB|WBGene00022139	869	tub-2 [Caenorhabditis elegans	0.51	0.117	0.640	7.2e-28
UNIPROTKB|F1PTB4	547	TUB "Uncharacterized protein"	0.375	0.137	0.487	1.2e-17

FB|FBgn0039530 Tusp "Tusp" [Drosophila melanogaster (taxid:7227)]

 Score = 448 (162.8 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 102/190 (53%), Positives = 127/190 (66%)

Query:    18 NPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRK-------NTNGSGNSRNVFSEERSST 70
             +P   KK  ++ +N   + I+ +LNSP+L RR++       +++  GN  N   EE ++ 
Sbjct:  1223 SPAASKKNKRQQSN---SPIRHILNSPLLNRRQRKKQSIIESSDDEGNQTNGSGEESNNA 1279

Query:    71 LDSFTSDYKDLETFQSLSYFLFRPQKCQMKKKMSVSTERREFRNNMLFKKEFIMQNKAPM 130
              +     Y+DLETFQ       R QK  +K+            N    ++EF+M NKAPM
Sbjct:  1280 GNG--KQYRDLETFQKAQ---LR-QK--LKRGKIEPNGSASCANPAPVRREFVMHNKAPM 1331

Query:   131 WNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPFSAVQAFAV 190
             WNE SQVYQLDFGGRVTQESAKNFQ+EFRGKQVMQFGRID NAYTLDFQYPFSA+QAFAV
Sbjct:  1332 WNEMSQVYQLDFGGRVTQESAKNFQIEFRGKQVMQFGRIDGNAYTLDFQYPFSALQAFAV 1391

Query:   191 ALANITQRLK 200
             ALAN+TQRLK
Sbjct:  1392 ALANVTQRLK 1401

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|F1P3I6 TULP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 374 (136.7 bits), Expect = 1.4e-33, P = 1.4e-33
 Identities = 90/213 (42%), Positives = 123/213 (57%)

Query:     3 KKAHKKC-TNIVDASINPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRKNTNGSGNSRN 61
             KK+ K+  +   + ++    + K  K    + D     L++SP L R +K      +   
Sbjct:   563 KKSRKRLDSRAEEGNVQAITEGKVKKDSRTLTD--FNSLISSPRLGREKKKVKSQKDQLK 620

Query:    62 VFSEERSSTLDSFTSDYKDLETFQSLSYFLFRPQKCQM----KKKMSVSTERREFRNNML 117
               S++ + T +   S   + E F S    + + Q  +     K+ +  ++E  EF+    
Sbjct:   621 --SKKLNKTNEFQDSSESEPELFISGDELMNQSQGSKKGWKTKRNLRTASELDEFKCRKA 678

Query:   118 FKKE----------FIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFG 167
              +KE          ++M NK P+WNE +QVYQLDFGGRVTQESAKNFQ+E  G+QVMQFG
Sbjct:   679 SEKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQVMQFG 738

Query:   168 RIDYNAYTLDFQYPFSAVQAFAVALANITQRLK 200
             RID NAY LDFQYPFSAVQAFAVALAN+TQRLK
Sbjct:   739 RIDGNAYILDFQYPFSAVQAFAVALANVTQRLK 771

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1916092 Tulp4 "tubby like protein 4" [Mus musculus (taxid:10090)]

 Score = 378 (138.1 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 95/213 (44%), Positives = 122/213 (57%)

Query:     3 KKAHKKC-TNIVDASINPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRKNTNGSGNSRN 61
             KK  K+  +   + S+    + K  K    + D     L++SP L R +K      +   
Sbjct:  1339 KKNRKRLDSRAEEGSVQAITEGKVKKDARTLSD--FNSLISSPRLGREKKKVKSQKDQLK 1396

Query:    62 VFSEERSSTLDSFTSDYKDLETFQSLSYFLFRPQ--KCQMKKKMSVST--ERREFRNNML 117
               S++ + T +   S   + E F S    + + Q  K   K K S+ T  E  EF+    
Sbjct:  1397 --SKKLNKTNEFQDSSESEPELFISGDELMNQSQGSKKGWKSKRSLRTASELEEFKCRKA 1454

Query:   118 FKKE----------FIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFG 167
              +KE          ++M NK P+WNE +QVYQLDFGGRVTQESAKNFQ+E  G+QVMQFG
Sbjct:  1455 SEKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQVMQFG 1514

Query:   168 RIDYNAYTLDFQYPFSAVQAFAVALANITQRLK 200
             RID NAY LDFQYPFSAVQAFAVALAN+TQRLK
Sbjct:  1515 RIDGNAYILDFQYPFSAVQAFAVALANVTQRLK 1547

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISA

GO:0008150 "biological_process" evidence=ND

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|F1P9V3 TULP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 377 (137.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 94/213 (44%), Positives = 123/213 (57%)

Query:     3 KKAHKKC-TNIVDASINPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRKNTNGSGNSRN 61
             KK  K+  +   + ++    + K  K+   + D     L++SP L R +K      +   
Sbjct:  1329 KKNRKRLDSRAEEGNVQAITEGKVKKEARTLSD--FNSLISSPRLGREKKKVKSQKDQLK 1386

Query:    62 VFSEERSSTLDSFTSDYKDLETFQSLSYFLFRPQ--KCQMKKKMSVST--ERREFRNNML 117
               S++ + T +   S   + E F S    + + Q  K   K K S+ T  E  EF+    
Sbjct:  1387 --SKKLNKTNEFQDSSESEPELFISGDELMNQSQGSKKGWKSKRSLRTASELEEFKCRKA 1444

Query:   118 FKKE----------FIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFG 167
              +KE          ++M NK P+WNE +QVYQLDFGGRVTQESAKNFQ+E  G+QVMQFG
Sbjct:  1445 SEKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQVMQFG 1504

Query:   168 RIDYNAYTLDFQYPFSAVQAFAVALANITQRLK 200
             RID NAY LDFQYPFSAVQAFAVALAN+TQRLK
Sbjct:  1505 RIDGNAYILDFQYPFSAVQAFAVALANVTQRLK 1537

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|J9P1J3 TULP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 377 (137.8 bits), Expect = 2.6e-33, P = 2.6e-33
 Identities = 94/213 (44%), Positives = 123/213 (57%)

Query:     3 KKAHKKC-TNIVDASINPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRKNTNGSGNSRN 61
             KK  K+  +   + ++    + K  K+   + D     L++SP L R +K      +   
Sbjct:  1340 KKNRKRLDSRAEEGNVQAITEGKVKKEARTLSD--FNSLISSPRLGREKKKVKSQKDQLK 1397

Query:    62 VFSEERSSTLDSFTSDYKDLETFQSLSYFLFRPQ--KCQMKKKMSVST--ERREFRNNML 117
               S++ + T +   S   + E F S    + + Q  K   K K S+ T  E  EF+    
Sbjct:  1398 --SKKLNKTNEFQDSSESEPELFISGDELMNQSQGSKKGWKSKRSLRTASELEEFKCRKA 1455

Query:   118 FKKE----------FIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFG 167
              +KE          ++M NK P+WNE +QVYQLDFGGRVTQESAKNFQ+E  G+QVMQFG
Sbjct:  1456 SEKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQVMQFG 1515

Query:   168 RIDYNAYTLDFQYPFSAVQAFAVALANITQRLK 200
             RID NAY LDFQYPFSAVQAFAVALAN+TQRLK
Sbjct:  1516 RIDGNAYILDFQYPFSAVQAFAVALANVTQRLK 1548

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|E1BH25 TULP4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 370 (135.3 bits), Expect = 1.3e-32, P = 1.3e-32
 Identities = 92/213 (43%), Positives = 124/213 (58%)

Query:     3 KKAHKKC-TNIVDASINPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRKNTNGSGNSRN 61
             KK  K+  +   + ++    + K  K+   + D     L++SP L R +K      +   
Sbjct:  1255 KKNRKRLDSRAEEGNVQAITEGKVKKEARTLSD--FNSLISSPRLGREKKKVKSQKDQLK 1312

Query:    62 VFSEERSSTLDSFTSDYKDLETFQSLSYFLFRPQ--KCQMKKKMSV--STERREFRNNML 117
               S++ + T +   S   + E F S    + + Q  K   K K S+  ++E  EF+    
Sbjct:  1313 --SKKLNKTNEFQDSSESEPELFISGDELMNQSQGSKKGWKSKRSLRAASELEEFKCRKA 1370

Query:   118 FKKE----------FIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFG 167
              +KE          ++M NK P+WNE +QVYQLDFGGRVTQESAKNFQ+E  G+QVMQFG
Sbjct:  1371 SEKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQVMQFG 1430

Query:   168 RIDYNAYTLDFQYPFSAVQAFAVALANITQRLK 200
             RID +AY LDFQYPFSAVQAFAVALAN+TQRLK
Sbjct:  1431 RIDGSAYILDFQYPFSAVQAFAVALANVTQRLK 1463

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|Q9NRJ4 TULP4 "Tubby-related protein 4" [Homo sapiens (taxid:9606)]

 Score = 358 (131.1 bits), Expect = 2.7e-31, P = 2.7e-31
 Identities = 91/213 (42%), Positives = 121/213 (56%)

Query:     3 KKAHKKC-TNIVDASINPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRKNTNGSGNSRN 61
             KK  K+  +   + S+    + K  K+   + D     L++SP L R +K      +   
Sbjct:  1335 KKNRKRLDSRAEEGSVQAITEGKVKKEARTLSD--FNSLISSPHLGREKKKVKSQKDQLK 1392

Query:    62 VFSEERSSTLDSFTSDYKDLETFQSLSYFLFRPQKCQM--KKKMS--VSTERREFRNNML 117
               S++ + T +   S   + E F S    + + Q  +   K K S   + E  E +    
Sbjct:  1393 --SKKLNKTNEFQDSSESEPELFISGDELMNQSQGSRKGWKSKRSPRAAGELEEAKCRRA 1450

Query:   118 FKKE----------FIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFG 167
              +KE          ++M NK P+WNE +QVYQLDFGGRVTQESAKNFQ+E  G+QVMQFG
Sbjct:  1451 SEKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQVMQFG 1510

Query:   168 RIDYNAYTLDFQYPFSAVQAFAVALANITQRLK 200
             RID +AY LDFQYPFSAVQAFAVALAN+TQRLK
Sbjct:  1511 RIDGSAYILDFQYPFSAVQAFAVALANVTQRLK 1543

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0007584 "response to nutrient" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-060503-215 tulp4 "tubby like protein 4" [Danio rerio (taxid:7955)]

 Score = 352 (129.0 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 66/79 (83%), Positives = 72/79 (91%)

Query:   122 FIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYP 181
             +IM NK P+WNE +QVYQLDFGGRVTQESAKNFQ+E  G+QVMQFGRID NAY LDFQYP
Sbjct:  1658 YIMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQVMQFGRIDGNAYILDFQYP 1717

Query:   182 FSAVQAFAVALANITQRLK 200
             FSAVQAFAVALAN+TQRLK
Sbjct:  1718 FSAVQAFAVALANVTQRLK 1736

GO:0035556 "intracellular signal transduction" evidence=IEA

WB|WBGene00022139 tub-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 322 (118.4 bits), Expect = 7.2e-28, P = 7.2e-28
 Identities = 66/103 (64%), Positives = 76/103 (73%)

Query:    98 QMKKKMSVSTERREFRNNMLFKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVE 157
             +MKK +     +     N   K E  M NK P WNE +QVYQLDFGGRVTQESAKNFQ+E
Sbjct:   768 EMKKALGEGVPKSGRSLNSTCKIE-TMTNKTPFWNEQNQVYQLDFGGRVTQESAKNFQIE 826

Query:   158 FRGKQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALANITQRLK 200
                KQV+QFGRI+  +YTLDF+YPFSA QAFAVALA+ITQRLK
Sbjct:   827 LDSKQVLQFGRIEGGSYTLDFRYPFSAAQAFAVALASITQRLK 869

GO:0005506 "iron ion binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0042597 "periplasmic space" evidence=IEA

UNIPROTKB|F1PTB4 TUB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 202 (76.2 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
 Identities = 39/80 (48%), Positives = 55/80 (68%)

Query:   124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ----VMQFGRIDYNAYTLDFQ 179
             +QNK P+WN+ +Q Y L+F GRVTQ S KNFQ+   G      VMQFGR+  + +T+D+ 
Sbjct:   466 LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQI-IHGNDPDYIVMQFGRVAEDVFTMDYN 524

Query:   180 YPFSAVQAFAVALANITQRL 199
             YP  A+QAFA+AL++   +L
Sbjct:   525 YPLCALQAFAIALSSFDSKL 544

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0050766 "positive regulation of phagocytosis" evidence=IEA

GO:0044259 "multicellular organismal macromolecule metabolic process" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	200
pfam01167	243	pfam01167, Tub, Tub family	8e-24

>gnl|CDD|216339 pfam01167, Tub, Tub family

 Score = 94.0 bits (234), Expect = 8e-24
 Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 123 IMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ---VMQFGRIDYNAYTLDFQ 179
           ++ NKAP WN+  Q Y L+F GRVTQ S KNFQ+         V+QFGR+  + +T+D++
Sbjct: 167 VLHNKAPRWNDQLQSYVLNFHGRVTQASVKNFQIVHASDPDYIVLQFGRVAKDMFTMDYR 226

Query: 180 YPFSAVQAFAVAL 192
           YP SA QAFA+ L
Sbjct: 227 YPLSAFQAFAICL 239

Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
KOG2502|consensus	355		100.0
KOG2503|consensus	565		100.0
PF01167	246	Tub: Tub family; InterPro: IPR000007 Tubby, an aut	100.0
PF12043	346	DUF3527: Domain of unknown function (DUF3527); Int	97.47

>KOG2502|consensus

Probab=100.00  E-value=1.3e-39  Score=294.41  Aligned_cols=82  Identities=44%  Similarity=0.805  Sum_probs=79.0

Q ss_pred             cCceeEEeeCCCccccCCCeeeecCCCceecccccceeEeeC---CceEEEEeeecCCeeEEEecCCCCHHHHHHHHHHh
Q psy5387         118 FKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFR---GKQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALAN  194 (200)
Q Consensus       118 ~~~~lvL~nK~P~Wne~~~~Y~LNF~GRVt~ASVKNFQLv~~---~~iVLQFGKv~kd~F~LDfryPLSplQAFAIALSs  194 (200)
                      ..++++|+||+|+||+++|||||||+||||+|||||||||+.   ++||||||||++|.|+|||+||||+||||||||||
T Consensus       268 ~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~~~p~~iiLQFGrV~kD~FTmDYrYPlSa~QAFaIcLSS  347 (355)
T KOG2502|consen  268 KEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHALDPEYIILQFGRVGKDVFTMDYRYPLSAFQAFAICLSS  347 (355)
T ss_pred             cccceEeecCCCccccccceEEEecCCeEEEeeecceEEeccCCCCEEEEEeeeeccceeeecccCccHHHHHHHHHHHh
Confidence            468899999999999999999999999999999999999984   57999999999999999999999999999999999


Q ss_pred             hhccc
Q psy5387         195 ITQRL  199 (200)
Q Consensus       195 fdsKL  199 (200)
                      ||+||
T Consensus       348 FdtKl  352 (355)
T KOG2502|consen  348 FDTKL  352 (355)
T ss_pred             ccccc
Confidence            99998

>KOG2503|consensus

Probab=100.00  E-value=2.4e-36  Score=283.56  Aligned_cols=176  Identities=49%  Similarity=0.601  Sum_probs=155.6

Q ss_pred             cCcCCcchhhhhhhccccccchhHHhhhcchhHHHHhhhcCCCCCCCCCCccc-c--------cCccCCcCcCccchhhh
Q psy5387          14 DASINPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRKNTNGSGNSRNVFSEE-R--------SSTLDSFTSDYKDLETF   84 (200)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sp~l~r~~~~~~~~~~~~~~~~~e-~--------~~~~~~~~~~~~dle~~   84 (200)
                      -||++|.-|-|.|-    ..-++|.++|+||.++|+.+|.....   +.+++| .        .+....+.+-|.|||+|
T Consensus       381 ~asp~~~~k~K~~a----~tla~i~~~lssphggr~~kk~ks~i---~~s~se~~t~tn~~~e~s~s~~ngk~~~dle~m  453 (565)
T KOG2503|consen  381 TASPNPPPKQKLTA----FTLAHIGNVLSSPHGGRLTKKRKSFI---VPSLSEIVTYTNWKMEGSSSKKNGKLPIDLEEM  453 (565)
T ss_pred             cCCCCCchhhhhhh----hcccchhhhhcccccCchhhhhhhhc---cchHHHHhhhhhhhccccccccCCCccccHHHH
Confidence            36777777777772    37899999999999999988877543   235555 1        22223378899999999


Q ss_pred             hhccccccccchhcccccccCchhhhhhhcccccCceeEEeeCCCccccCCCeeeecCCCceecccccceeEeeCCceEE
Q psy5387          85 QSLSYFLFRPQKCQMKKKMSVSTERREFRNNMLFKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVM  164 (200)
Q Consensus        85 q~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~lvL~nK~P~Wne~~~~Y~LNF~GRVt~ASVKNFQLv~~~~iVL  164 (200)
                      +++|.    +.|...|+.-..+...+-|++...+.+..+|.||+|.|||.++.|+|||+||||+.|.||||+..++++||
T Consensus       454 n~~q~----~~k~~~gkr~Prs~a~c~~as~~~d~R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~gkQvm  529 (565)
T KOG2503|consen  454 NALQE----LDKHVIGKRIPRSQAMCSYASSVVDARCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELFGKQVM  529 (565)
T ss_pred             HHHHH----hhhhhhcccCCCccchhccccccccceEEEeecCCccccccceEEEeccCCccchhhhccceEeecchhhh
Confidence            99999    99999999998888888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeecCCeeEEEecCCCCHHHHHHHHHHhhhcccC
Q psy5387         165 QFGRIDYNAYTLDFQYPFSAVQAFAVALANITQRLK  200 (200)
Q Consensus       165 QFGKv~kd~F~LDfryPLSplQAFAIALSsfdsKL~  200 (200)
                      |||+|+.+.|+|||+||||+.||||+||++...|||
T Consensus       530 qFgRidg~aytldfqypfSa~QaFavalanvtqRLK  565 (565)
T KOG2503|consen  530 QFGRIDGPAYTLDFQYPFSAGQAFAVALANVTQRLK  565 (565)
T ss_pred             eeccccCCcccCCCCCchHHHHHHHHHHhhhhhhcC
Confidence            999999999999999999999999999999999986

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function

Probab=100.00  E-value=8.2e-36  Score=255.30  Aligned_cols=79  Identities=44%  Similarity=0.818  Sum_probs=70.6

Q ss_pred             cCceeEEeeCCCccccCCCeeeecCCCceecccccceeEeeCC---ceEEEEeeecCCeeEEEecCCCCHHHHHHHHHHh
Q psy5387         118 FKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRG---KQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALAN  194 (200)
Q Consensus       118 ~~~~lvL~nK~P~Wne~~~~Y~LNF~GRVt~ASVKNFQLv~~~---~iVLQFGKv~kd~F~LDfryPLSplQAFAIALSs  194 (200)
                      ..+.++|+||+|.||+++++|+|||+|||++||||||||++++   ++||||||++++.|+|||+|||||+||||||||+
T Consensus       165 ~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~~~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lss  244 (246)
T PF01167_consen  165 KDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNFQLVHPSDPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSS  244 (246)
T ss_dssp             TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEEEEEBTTBTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHH
T ss_pred             CcceEEEecCCCcEeccCCeEEeccCCeEeccccceeEEEccCCCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhc
Confidence            4578999999999999999999999999999999999999864   6899999999999999999999999999999999


Q ss_pred             hh
Q psy5387         195 IT  196 (200)
Q Consensus       195 fd  196 (200)
                      ||
T Consensus       245 fd  246 (246)
T PF01167_consen  245 FD  246 (246)
T ss_dssp             HH
T ss_pred             CC
Confidence            98

This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.

>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised

Probab=97.47  E-value=0.00015  Score=66.84  Aligned_cols=54  Identities=20%  Similarity=0.463  Sum_probs=44.6

Q ss_pred             ceecccccceeEeeCC----ceEEEEeeecCCeeEEEecCCCCHHHHHHHHHHhhhcc
Q psy5387         145 RVTQESAKNFQVEFRG----KQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALANITQR  198 (200)
Q Consensus       145 RVt~ASVKNFQLv~~~----~iVLQFGKv~kd~F~LDfryPLSplQAFAIALSsfdsK  198 (200)
                      +...+.-+=|.|..++    ..+|-|.-+.++.|.+||+.+||+||||+||+|-++.+
T Consensus       288 ~~~~~~~~~feLf~QG~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~~  345 (346)
T PF12043_consen  288 SSSKESSHPFELFVQGSKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHSQ  345 (346)
T ss_pred             ccccccCCceeeeecccccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeecc
Confidence            3444566678887654    37899999999999999999999999999999977653

This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
1c8z_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Leng		1e-17
1s31_A	273	Crystal Structure Analysis Of The Human Tub Protein		2e-17
1i7e_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Boun		3e-17
2fim_A	276	Structure Of The C-Terminal Domain Of Human Tubby-L		8e-17
3c5n_A	246	Structure Of Human Tulp1 In Complex With Ip3 Length		2e-16

>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ----VMQFGRIDYNAYTLDFQ 179
           +QNK P+WN+ +Q Y L+F GRVTQ S KNFQ+   G      VMQFGR+  + +T+D+ 
Sbjct: 184 LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQI-IHGNDPDYIVMQFGRVAEDVFTMDYN 242
Query: 180 YPFSAVQAFAVALANITQRL 199
           YP  A+QAFA+AL++   +L
Sbjct: 243 YPLCALQAFAIALSSFDSKL 262

>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ----VMQFGRIDYNAYTLDFQ 179
           +QNK P+WN+ +Q Y L+F GRVTQ S KNFQ+   G      VMQFGR+  + +T+D+ 
Sbjct: 192 LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQI-IHGNDPDYIVMQFGRVAEDVFTMDYN 250
Query: 180 YPFSAVQAFAVALANITQRL 199
           YP  A+QAFA+AL++   +L
Sbjct: 251 YPLCALQAFAIALSSFDSKL 270

>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ----VMQFGRIDYNAYTLDFQ 179
           +QNK P+WN+ ++ Y L+F GRVTQ S KNFQ+   G      VMQFGR+  + +T+D+ 
Sbjct: 184 LQNKTPVWNDDTESYVLNFHGRVTQASVKNFQI-IHGNDPDYIVMQFGRVAEDVFTMDYN 242
Query: 180 YPFSAVQAFAVALANITQRL 199
           YP  A+QAFA+AL++   +L
Sbjct: 243 YPLCALQAFAIALSSFDSKL 262

>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ---VMQFGRIDYNAYTLDFQY 180
           + NK P+WN+ S  Y L+F GRVTQ S KNFQ+         V+QFGR+  +A+TLD++Y
Sbjct: 195 LHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRY 254
Query: 181 PFSAVQAFAVALANITQRL 199
           P  A+QAFA+AL++   +L
Sbjct: 255 PLCALQAFAIALSSFDGKL 273

>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
Query: 124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ---VMQFGRIDYNAYTLDFQY 180
           + NK P+WN+ S  Y L+F GRVTQ S KNFQ+         V+QFGR+  +A+TLD++Y
Sbjct: 171 LHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRY 230
Query: 181 PFSAVQAFAVALAN 194
           P  A+QAFA+AL++
Sbjct: 231 PLCALQAFAIALSS 244

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	5e-27
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	3e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276

 Score =  102 bits (256), Expect = 5e-27
 Identities = 40/108 (37%), Positives = 66/108 (61%), Gaps = 4/108 (3%)

Query: 95  QKCQMKKKMSVSTERREFRNNMLFKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNF 154
           ++  ++ + +       ++N  L +    + NK P+WN+ S  Y L+F GRVTQ S KNF
Sbjct: 167 ERVPIRPRNASDGLLVRWQNKTL-ESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNF 225

Query: 155 QV---EFRGKQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALANITQRL 199
           Q+   +     V+QFGR+  +A+TLD++YP  A+QAFA+AL++   +L
Sbjct: 226 QIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKL 273

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246

 Score =  100 bits (249), Expect = 3e-26
 Identities = 39/103 (37%), Positives = 64/103 (62%), Gaps = 4/103 (3%)

Query: 95  QKCQMKKKMSVSTERREFRNNMLFKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNF 154
           ++  ++ + +       ++N  L +    + NK P+WN+ S  Y L+F GRVTQ S KNF
Sbjct: 143 ERVPIRPRNASDGLLVRWQNKTL-ESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNF 201

Query: 155 QV---EFRGKQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALAN 194
           Q+   +     V+QFGR+  +A+TLD++YP  A+QAFA+AL++
Sbjct: 202 QIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSS 244

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 40/168 (23%)

Query: 10  TNIVDASINPTMKKKAHKKC---------TNIVDA-SIKC--LLNSPMLQRRRKNTN--G 55
            + + A +   +K K ++ C             +A ++ C  LL +    R ++ T+   
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT----RFKQVTDFLS 282

Query: 56  SGNSRNVFSEERSSTLDSFTSDYKDLETFQSLSYFLFRPQKCQMKKKMSVSTERREFRNN 115
           +  + ++  +  S    + T D       +  S  L    K             RE    
Sbjct: 283 AATTTHISLDHHS---MTLTPD-------EVKSLLL----KYL---DCRPQDLPREVLTT 325

Query: 116 MLFKKEFI---MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQ-VEFR 159
              +   I   +++    W+        D    + + S    +  E+R
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEPAEYR 372

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	100.0
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	100.0

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*

Probab=100.00  E-value=7.1e-39  Score=278.56  Aligned_cols=81  Identities=47%  Similarity=0.835  Sum_probs=75.1

Q ss_pred             CceeEEeeCCCccccCCCeeeecCCCceecccccceeEeeCC---ceEEEEeeecCCeeEEEecCCCCHHHHHHHHHHhh
Q psy5387         119 KKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRG---KQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALANI  195 (200)
Q Consensus       119 ~~~lvL~nK~P~Wne~~~~Y~LNF~GRVt~ASVKNFQLv~~~---~iVLQFGKv~kd~F~LDfryPLSplQAFAIALSsf  195 (200)
                      .+.++|+||+|+|||++++|||||+||||+|||||||||+++   .+|||||||+++.|+|||+|||||+||||||||||
T Consensus       190 ~~~~~l~nK~P~wne~~~~y~LnF~GRVt~aSvKNFQLv~~~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSf  269 (276)
T 2fim_A          190 ESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSF  269 (276)
T ss_dssp             TTEEEEEECCCEEETTTTEEECCCTTCCCSCCTTCEEEECTTCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTC
T ss_pred             cceEeeeccCCcccccCCEEEEecCCeeeccccceEEEEecCCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhc
Confidence            468999999999999999999999999999999999999864   58999999999999999999999999999999999


Q ss_pred             hccc
Q psy5387         196 TQRL  199 (200)
Q Consensus       196 dsKL  199 (200)
                      |+||
T Consensus       270 d~Kl  273 (276)
T 2fim_A          270 DGKL  273 (276)
T ss_dssp             C---
T ss_pred             cccc
Confidence            9998

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A

Probab=100.00  E-value=2e-38  Score=271.44  Aligned_cols=78  Identities=47%  Similarity=0.842  Sum_probs=74.9

Q ss_pred             CceeEEeeCCCccccCCCeeeecCCCceecccccceeEeeCC---ceEEEEeeecCCeeEEEecCCCCHHHHHHHHHHhh
Q psy5387         119 KKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRG---KQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALANI  195 (200)
Q Consensus       119 ~~~lvL~nK~P~Wne~~~~Y~LNF~GRVt~ASVKNFQLv~~~---~iVLQFGKv~kd~F~LDfryPLSplQAFAIALSsf  195 (200)
                      .+.++|+||+|+|||+++||||||+||||+||||||||++++   .+|||||||++|.|+|||+|||||+||||||||||
T Consensus       166 ~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~aSvKNFqLv~~~~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSf  245 (246)
T 3c5n_A          166 ESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSF  245 (246)
T ss_dssp             TTEEEEEECCCEEETTTTEEECCCTTSCCBCCTTCEEEEBTTBTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTC
T ss_pred             cceEEEeccCCcccccCCEEEEecCCeeeccccceEEEEecCCCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcC
Confidence            478999999999999999999999999999999999999865   58999999999999999999999999999999999


Q ss_pred             h
Q psy5387         196 T  196 (200)
Q Consensus       196 d  196 (200)
                      |
T Consensus       246 D  246 (246)
T 3c5n_A          246 D  246 (246)
T ss_dssp             C
T ss_pred             C
Confidence            7

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d1c8za_	265	d.23.1.1 (A:) Transcriptional factor tubby, C-term	4e-26

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.9 bits (246), Expect = 4e-26
 Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 122 FIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQV---EFRGKQVMQFGRIDYNAYTLDF 178
             +QNK P+WN+ +Q Y L+F GRVTQ S KNFQ+         VMQFGR+  + +T+D+
Sbjct: 182 IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDY 241

Query: 179 QYPFSAVQAFAVALANITQRL 199
            YP  A+QAFA+AL++   +L
Sbjct: 242 NYPLCALQAFAIALSSFDSKL 262

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d1c8za_	265	Transcriptional factor tubby, C-terminal domain {M	100.0

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.4e-35  Score=249.67  Aligned_cols=82  Identities=46%  Similarity=0.818  Sum_probs=77.9

Q ss_pred             cCceeEEeeCCCccccCCCeeeecCCCceecccccceeEeeCC---ceEEEEeeecCCeeEEEecCCCCHHHHHHHHHHh
Q psy5387         118 FKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRG---KQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALAN  194 (200)
Q Consensus       118 ~~~~lvL~nK~P~Wne~~~~Y~LNF~GRVt~ASVKNFQLv~~~---~iVLQFGKv~kd~F~LDfryPLSplQAFAIALSs  194 (200)
                      ....++|+||+|+||+++++|+|||+|||++||||||||++++   ++|||||||++++|+|||+|||||+||||||||+
T Consensus       178 ~~~~~~l~~k~P~~n~~~~~~~LnF~gRv~~~SvKNFql~~~~~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lss  257 (265)
T d1c8za_         178 TESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSS  257 (265)
T ss_dssp             CSSEEEEEECCCEEETTTTEEEEEETTEEEECBTTEEEEECTTCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHH
T ss_pred             cccceEEecCCCeeeccCCEEEeccCCEEeccccceEEEEeCCCCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHH
Confidence            3578899999999999999999999999999999999999754   5899999999999999999999999999999999


Q ss_pred             hhccc
Q psy5387         195 ITQRL  199 (200)
Q Consensus       195 fdsKL  199 (200)
                      ||+||
T Consensus       258 f~~Kl  262 (265)
T d1c8za_         258 FDSKL  262 (265)
T ss_dssp             HHSSC
T ss_pred             hcccc
Confidence            99998