Psyllid ID: psy5406

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520---
MAILFNGIVMSHYTHYNLSTVTQITMQQTMRTLSFIAETCVFAYLGKNISISNTPILTSSTKKELLEQLPDIANNVTLAPIVVILPNSTTENGNVSSTSAPEPVLPEKGSAEEERNSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSARTYSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIGRRRRGRKGKTAISLSKTKE
cEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHcccccccHHEEEEcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccc
cEEEEEcEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEHHHccccHEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHccccHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHEEEEHcHHHHHHHHHHHHHcccccccccEEEEEHEEHEHHHHHHHccccHHHHHHHcccccccccccHccccccccEccccccc
mailfngiVMSHYTHYNLSTVTQITMQQTMRTLSFIAETCVFAYLGknisisntpiltssTKKELLEQLpdiannvtlAPIVvilpnsttengnvsstsapepvlpekgsaeeernSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNknianwhkeetfsptafflvllppiifesgynlhkgnffQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFgslisavdpvATVAIFHaldvdpvlnMLVFGESILNDAIAIVLTTsilgsdnpnmTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVdlrknpslefGLMLVFTYAPYALAEGIHLSARTYSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVgracnifplAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLhlefsdetrHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSsnqkigrrrrgrkgktaISLSKTKE
MAILFNGIVMSHYTHYNLSTVTQITMQQTMRTLSFIAETCVFAYLGKNISISNTPILTSSTKKELLEQLPDIANNVTLAPIVVILPnsttengnvsstsapepvLPEKGSAEEERNSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSARTYSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLmkilqtssnqkigrrrrgrkgktaislsktke
MAILFNGIVMSHYTHYNLSTVTQITMQQTMRTLSFIAETCVFAYLGKNISISNTPILTSSTKKELLEQLPDIANNVTLAPIVVILPNSTTENGNVSSTSAPEPVLPEKGSAEEERNSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSARTYSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLEFSDETRHviitstliivlvttlvFGGSTMPLMKILQTSSNQkigrrrrgrkgkTAISLSKTKE
**ILFNGIVMSHYTHYNLSTVTQITMQQTMRTLSFIAETCVFAYLGKNISISNTPILTSSTKKELLEQLPDIANNVTLAPIVVILP********************************IAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSARTYSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKIL****************************
MAILFNGIVMSHYTHYNLSTVTQITMQQTMRTLSFIAETCVFAYLGKNISISNTPI***********************************************************NSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSARTYSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKI*****************************
MAILFNGIVMSHYTHYNLSTVTQITMQQTMRTLSFIAETCVFAYLGKNISISNTPILTSSTKKELLEQLPDIANNVTLAPIVVILPNSTT************************RNSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSARTYSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTS*************************
MAILFNGIVMSHYTHYNLSTVTQITMQQTMRTLSFIAETCVFAYLGKNISISNTPILT*********************************************VLPEKGSAEEERNSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSARTYSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSS************************
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MAILFNGIVMSHYTHYNLSTVTQITMQQTMRTLSFIAETCVFAYLGKNISISNTPILTSSTKKELLEQLPDIANNVTLAPIVVILPNSTTENGNVSSTSAPEPVLPEKGSAEEERNSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSARTYSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIGRRRRGRKGKTAISLSKTKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query523 2.2.26 [Sep-21-2011]
Q4R8V4542 Sodium/hydrogen exchanger N/A N/A 0.785 0.758 0.566 1e-134
Q9Y2E8581 Sodium/hydrogen exchanger yes N/A 0.795 0.716 0.526 1e-130
Q5ZJ75574 Sodium/hydrogen exchanger yes N/A 0.795 0.724 0.520 1e-130
Q4L208575 Sodium/hydrogen exchanger yes N/A 0.795 0.723 0.529 1e-129
Q8R4D1576 Sodium/hydrogen exchanger yes N/A 0.795 0.722 0.524 1e-129
Q552S0 674 Sodium/hydrogen exchanger yes N/A 0.726 0.563 0.350 6e-67
Q8BZ00 644 Sodium/hydrogen exchanger no N/A 0.611 0.496 0.389 8e-58
Q8IVB4 645 Sodium/hydrogen exchanger no N/A 0.606 0.491 0.389 9e-57
Q92581 669 Sodium/hydrogen exchanger no N/A 0.812 0.635 0.317 1e-52
Q8RWU6535 Sodium/hydrogen exchanger yes N/A 0.730 0.714 0.334 7e-51
>sp|Q4R8V4|SL9A8_MACFA Sodium/hydrogen exchanger 8 OS=Macaca fascicularis GN=SLC9A8 PE=2 SV=1 Back     alignment and function desciption
 Score =  479 bits (1232), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/429 (56%), Positives = 318/429 (74%), Gaps = 18/429 (4%)

Query: 102 EPVLP---EKGSAEEERNSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGAL 158
           +P+LP    + + +EE++S + IFF L VLA+ I+L+H ++++   +LPES+A+V LG L
Sbjct: 40  KPILPVQTGEQAQQEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGIL 99

Query: 159 IGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAI 218
           +G +I ++  K +ANW +EE F P  FFL+LLPPIIFESGY+LHKGNFFQNIGSI +FA+
Sbjct: 100 MGAVIKIIEFKKLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAV 159

Query: 219 IGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLN 278
            GT ISAFV+G G+Y LG ADV  KL+  +SFAFGSLISAVDPVAT+AIF+AL VDPVLN
Sbjct: 160 FGTAISAFVVGGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLN 219

Query: 279 MLVFGESILNDAIAIVLTTSILGSDNPNMTT---WEAVLTGFNHFCLMFFASAGIGVLFA 335
           MLVFGESILNDA++IVLT +  G    NM+    W+  L   ++F  MFF SA +G L  
Sbjct: 220 MLVFGESILNDAVSIVLTNTAEGLTRKNMSDVSGWQTFLQALDYFLKMFFGSAALGTLTG 279

Query: 336 LISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSARTYSKTLVFLITGLAIFSF 395
           LISAL+LK++DLRK PSLEFG+M++F Y PY LAEGI L     S+T VF   GL+IFSF
Sbjct: 280 LISALVLKHIDLRKTPSLEFGMMIIFAYLPYGLAEGISL-----SETCVFAFLGLSIFSF 334

Query: 396 RHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYAL 455
            H+ E + VIW ++L L GRA NIFPL+ L+N FR+H+IT +MMFIMWFSGLRGAI YAL
Sbjct: 335 PHKFEISFVIWCIVLVLFGRAVNIFPLSYLLNFFRDHKITPKMMFIMWFSGLRGAIPYAL 394

Query: 456 SLHLEFSD-ETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIGRRRRGRKGKT 514
           SLHL+    E R +I T+T++IVL T L+ GGSTMPL++++     +    RRR +K   
Sbjct: 395 SLHLDLEPMEKRQLIGTTTIVIVLFTILLLGGSTMPLIRLMDIEDAKA---RRRNKKD-- 449

Query: 515 AISLSKTKE 523
            ++LSKT++
Sbjct: 450 -VNLSKTEK 457
Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.
Macaca fascicularis (taxid: 9541)
>sp|Q9Y2E8|SL9A8_HUMAN Sodium/hydrogen exchanger 8 OS=Homo sapiens GN=SLC9A8 PE=1 SV=4 Back     alignment and function description
>sp|Q5ZJ75|SL9A8_CHICK Sodium/hydrogen exchanger 8 OS=Gallus gallus PE=2 SV=1 Back     alignment and function description
>sp|Q4L208|SL9A8_RAT Sodium/hydrogen exchanger 8 OS=Rattus norvegicus GN=Slc9a8 PE=2 SV=1 Back     alignment and function description
>sp|Q8R4D1|SL9A8_MOUSE Sodium/hydrogen exchanger 8 OS=Mus musculus GN=Slc9a8 PE=2 SV=1 Back     alignment and function description
>sp|Q552S0|NHE1_DICDI Sodium/hydrogen exchanger 1 OS=Dictyostelium discoideum GN=nhe1 PE=2 SV=1 Back     alignment and function description
>sp|Q8BZ00|SL9A9_MOUSE Sodium/hydrogen exchanger 9 OS=Mus musculus GN=Slc9a9 PE=2 SV=1 Back     alignment and function description
>sp|Q8IVB4|SL9A9_HUMAN Sodium/hydrogen exchanger 9 OS=Homo sapiens GN=SLC9A9 PE=1 SV=1 Back     alignment and function description
>sp|Q92581|SL9A6_HUMAN Sodium/hydrogen exchanger 6 OS=Homo sapiens GN=SLC9A6 PE=1 SV=2 Back     alignment and function description
>sp|Q8RWU6|NHX6_ARATH Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query523
193666950621 PREDICTED: sodium/hydrogen exchanger 8-l 0.889 0.748 0.718 0.0
383853275 729 PREDICTED: sodium/hydrogen exchanger 8-l 0.801 0.574 0.769 0.0
307187519 730 Sodium/hydrogen exchanger 8 [Camponotus 0.906 0.649 0.695 0.0
350406249 726 PREDICTED: sodium/hydrogen exchanger 8-l 0.948 0.683 0.652 0.0
340716045 679 PREDICTED: sodium/hydrogen exchanger 8-l 0.801 0.617 0.767 0.0
307213497 730 Sodium/hydrogen exchanger 8 [Harpegnatho 0.841 0.602 0.734 0.0
322798700 724 hypothetical protein SINV_03720 [Solenop 0.801 0.578 0.756 0.0
328789038608 PREDICTED: sodium/hydrogen exchanger 8, 0.801 0.689 0.765 0.0
380018427621 PREDICTED: sodium/hydrogen exchanger 8-l 0.801 0.674 0.760 0.0
161375766 630 sodium/hydrogen exchanger 8 [Manduca sex 0.827 0.687 0.729 0.0
>gi|193666950|ref|XP_001944697.1| PREDICTED: sodium/hydrogen exchanger 8-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/504 (71%), Positives = 401/504 (79%), Gaps = 39/504 (7%)

Query: 56  ILTSSTKKELLEQLPDIANNVTLAPIVVILPNSTTENGNVSST--SAPEPVLPEKGSAEE 113
           +L SS       ++ ++ N+ T   +  ++ N T+ N    ST  +  EPVLP+KGSAEE
Sbjct: 26  LLNSSQPISADNEVKNVTNSSTTPEVSTVVTNETSTNMTEKSTVVTPGEPVLPKKGSAEE 85

Query: 114 ERNSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIAN 173
           ERNSSIAIFFVL VLALGILLIH ML  HFQYLPES+ IVFLGA+IG+IINLMS ++IAN
Sbjct: 86  ERNSSIAIFFVLSVLALGILLIHLMLSTHFQYLPESVVIVFLGAVIGLIINLMSEQHIAN 145

Query: 174 WHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVY 233
           W  EE FSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISA VIGAG+Y
Sbjct: 146 WRNEEAFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISALVIGAGIY 205

Query: 234 ILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAI 293
           +LGLA++AYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAI
Sbjct: 206 VLGLAEIAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAI 265

Query: 294 VLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKNPSL 353
           VLTTS+L S+ P M+T EAVLTG   FCLMFFASAGIGV+FALISALLLKYVDLRK PSL
Sbjct: 266 VLTTSVLQSNGPAMSTSEAVLTGIKQFCLMFFASAGIGVIFALISALLLKYVDLRKTPSL 325

Query: 354 EFGLMLVFTYAPYALAEGIHLSA-------------------------------RTYS-- 380
           EF +MLVFTYAPY LAEGIHLS                                RT +  
Sbjct: 326 EFAMMLVFTYAPYVLAEGIHLSGIMAILFNGIVMSHYTHFNLSTVTQITMQQTMRTLAFI 385

Query: 381 -KTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMM 439
            +T VF   GLA+FSFR   EPALVIWSLILCL+GRACNIFPLA L N+FREHQIT+ MM
Sbjct: 386 AETCVFAYLGLALFSFRLHFEPALVIWSLILCLIGRACNIFPLAYLCNKFREHQITKNMM 445

Query: 440 FIMWFSGLRGAISYALSLHLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSS 499
           FIMWFSGLRGAISYALSLHLEFS+ETRHVIIT+TL I+LVTTL+FGGSTMPLMKILQ+S 
Sbjct: 446 FIMWFSGLRGAISYALSLHLEFSNETRHVIITTTLCIILVTTLLFGGSTMPLMKILQSSK 505

Query: 500 NQKIGRRRRGRKGKTAISLSKTKE 523
           + +  RRRR  K   AISLSKTKE
Sbjct: 506 SGRSTRRRRKDK---AISLSKTKE 526

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383853275|ref|XP_003702148.1| PREDICTED: sodium/hydrogen exchanger 8-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307187519|gb|EFN72570.1| Sodium/hydrogen exchanger 8 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|350406249|ref|XP_003487707.1| PREDICTED: sodium/hydrogen exchanger 8-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340716045|ref|XP_003396514.1| PREDICTED: sodium/hydrogen exchanger 8-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|307213497|gb|EFN88906.1| Sodium/hydrogen exchanger 8 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|322798700|gb|EFZ20298.1| hypothetical protein SINV_03720 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|328789038|ref|XP_397447.3| PREDICTED: sodium/hydrogen exchanger 8, partial [Apis mellifera] Back     alignment and taxonomy information
>gi|380018427|ref|XP_003693130.1| PREDICTED: sodium/hydrogen exchanger 8-like, partial [Apis florea] Back     alignment and taxonomy information
>gi|161375766|gb|ABX71221.1| sodium/hydrogen exchanger 8 [Manduca sexta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query523
FB|FBgn0026787 649 Nhe1 "Na[+]/H[+] hydrogen exch 0.741 0.597 0.565 2.4e-108
UNIPROTKB|F1MWW1 585 LOC617800 "Sodium/hydrogen exc 0.703 0.629 0.486 6.7e-88
UNIPROTKB|E2R7C3 581 SLC9A8 "Sodium/hydrogen exchan 0.678 0.611 0.501 8.6e-88
UNIPROTKB|Q5ZJ75 574 Q5ZJ75 "Sodium/hydrogen exchan 0.678 0.618 0.493 8.6e-88
UNIPROTKB|Q9Y2E8 581 SLC9A8 "Sodium/hydrogen exchan 0.694 0.624 0.489 1.4e-87
ZFIN|ZDB-GENE-041212-7 640 slc9a8 "solute carrier family 0.640 0.523 0.505 1.8e-87
RGD|1308193 575 Slc9a8 "solute carrier family 0.640 0.582 0.508 2e-86
UNIPROTKB|Q4L208 575 Slc9a8 "Sodium/hydrogen exchan 0.640 0.582 0.508 2e-86
MGI|MGI:1924281 576 Slc9a8 "solute carrier family 0.640 0.581 0.505 5.4e-86
UNIPROTKB|F1N9A5 586 SLC9A8 "Sodium/hydrogen exchan 0.678 0.605 0.473 5.6e-84
FB|FBgn0026787 Nhe1 "Na[+]/H[+] hydrogen exchanger 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
 Identities = 232/410 (56%), Positives = 289/410 (70%)

Query:    46 GKNISISNTPILTSST-KKELLEQLPDIANNVTLA---PIVVILPN-STTENGNVSSTSA 100
             G+ +  S T   T++T     +  + D+  N  L    P +    N STT+ GN +ST  
Sbjct:    25 GQEVPQSKTSSNTTTTDNSSSIHTVSDVFVNSPLGNVTPSISASGNASTTKRGN-ASTLV 83

Query:   101 PEPVLPEKGSAEEERNSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIG 160
              +P L +  + E+E NSS+++FFV+CV+ LGILLIH MLQ  FQYLPESI +VFLGA IG
Sbjct:    84 TDPPLIDSHAVEQEHNSSLSLFFVICVIMLGILLIHSMLQTGFQYLPESIVVVFLGAFIG 143

Query:   161 MIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIG 220
             + +N+MS +N  +W +EE FSP  FFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAI G
Sbjct:   144 LSLNVMSGQN-GSWKREEVFSPMGFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIFG 202

Query:   221 TTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNML 280
             TTISA VIGAG+Y+LGL +VA++LSF ESFAFGSLISAVDPVATVAIFHALDVDP+LNML
Sbjct:   203 TTISALVIGAGIYLLGLGEVAFRLSFSESFAFGSLISAVDPVATVAIFHALDVDPILNML 262

Query:   281 VFGESILNDAIAIVLTTSILGSDNPNM--TTWEAVLTGFNHFCLMFFASAGIGVLFALIS 338
             VFGESILNDAI+IVLT SI  S N N   +T EA+ +    FC MFFASAGIGV+FALIS
Sbjct:   263 VFGESILNDAISIVLTASITQSANVNAEASTGEAMFSALKTFCAMFFASAGIGVIFALIS 322

Query:   339 ALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSARTYSKTLVFLITGLAIFSFRH- 397
             ALLLK++DLRK+PSLEF +ML+FTYAPY LAEGIHLS       +  L  G+ +  + H 
Sbjct:   323 ALLLKHIDLRKHPSLEFAMMLMFTYAPYVLAEGIHLSG-----IMAILFCGIVMSHYTHF 377

Query:   398 ---RVEPALVIWSL-ILCLVGRACNIFPLAILVNRFREHQITRRMMFIMW 443
                 V    +  ++  L  +   C    L + +  F+ HQ+   + F++W
Sbjct:   378 NLSTVTQITMQQTMRTLAFIAETCVFAYLGLAIFSFK-HQV--ELSFVIW 424
GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS;NAS
GO:0006885 "regulation of pH" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0006814 "sodium ion transport" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
UNIPROTKB|F1MWW1 LOC617800 "Sodium/hydrogen exchanger" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R7C3 SLC9A8 "Sodium/hydrogen exchanger" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ75 Q5ZJ75 "Sodium/hydrogen exchanger 8" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2E8 SLC9A8 "Sodium/hydrogen exchanger 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041212-7 slc9a8 "solute carrier family 9 (sodium/hydrogen exchanger), member 8" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1308193 Slc9a8 "solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q4L208 Slc9a8 "Sodium/hydrogen exchanger 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1924281 Slc9a8 "solute carrier family 9 (sodium/hydrogen exchanger), member 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1N9A5 SLC9A8 "Sodium/hydrogen exchanger" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8R4D1SL9A8_MOUSENo assigned EC number0.52480.79540.7222yesN/A
Q8RWU6NHX6_ARATHNo assigned EC number0.33480.73040.7140yesN/A
O13726YDO6_SCHPONo assigned EC number0.32340.70740.6525yesN/A
Q9Y2E8SL9A8_HUMANNo assigned EC number0.52690.79540.7160yesN/A
Q4L208SL9A8_RATNo assigned EC number0.52910.79540.7234yesN/A
Q5ZJ75SL9A8_CHICKNo assigned EC number0.52050.79540.7247yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query523
TIGR00840 559 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 3e-66
COG0025429 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport 7e-36
pfam00999370 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang 2e-23
TIGR00831525 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial fo 1e-16
COG3263 574 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antip 7e-10
PRK05326 562 PRK05326, PRK05326, potassium/proton antiporter; R 4e-08
TIGR00840559 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 2e-06
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 Back     alignment and domain information 
 Score =  223 bits (570), Expect = 3e-66
 Identities = 120/402 (29%), Positives = 207/402 (51%), Gaps = 51/402 (12%)

Query: 146 LPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGN 205
           +PES+ ++  G L+G II    + +        T   + FFL LLPPI+ ++GY + + N
Sbjct: 35  VPESVLLIVYGLLVGGIIKASPHIDPP------TLDSSYFFLYLLPPIVLDAGYFMPQRN 88

Query: 206 FFQNIGSILVFAIIGTTISAFVIGAGVY----ILGLADVAYKLSFVESFAFGSLISAVDP 261
           FF+N+GSIL+FA++GT I+AFVIG  +Y    I G   +   +  +++  FGSLISAVDP
Sbjct: 89  FFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSI--DIGLLDNLLFGSLISAVDP 146

Query: 262 VATVAIFHALDVDPVLNMLVFGESILNDAIAIVL--TTSILGSDNPNMTTWEAVLTGFNH 319
           VA +A+F    V+  L +++FGES+LNDA+ +VL  T            T   V  G   
Sbjct: 147 VAVLAVFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCAS 206

Query: 320 FCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSA--- 376
           F ++      +GV+F  + A + ++    +   +E   + + +Y  Y  AE +HLS    
Sbjct: 207 FFVVTCGGLLVGVVFGFLVAFITRFTHHIR--QIEPLFVFLISYLSYLFAETLHLSGILA 264

Query: 377 --------RTY-----------------------SKTLVFLITGLAIFSFRHRVEPALVI 405
                   + Y                       S+TL+F+  G+++ +  H    A V+
Sbjct: 265 LIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFVV 324

Query: 406 WSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHL-EFSDE 464
            +L  C++ R   +  L+ + N FR  +I  +   +++++GLRGA+++AL+L L E    
Sbjct: 325 ATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFYAGLRGAVAFALALLLDEKIFP 384

Query: 465 TRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIGRR 506
            + + +T+TL++V  T +  GG+  PL+++L+         +
Sbjct: 385 YKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLKVKKGCISKTK 426

The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals.Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in(1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles.This model is specific for the eukaryotic members members of this family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 559
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family Back     alignment and domain information
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form Back     alignment and domain information
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed Back     alignment and domain information
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 523
KOG1965|consensus575 100.0
TIGR00840 559 b_cpa1 sodium/hydrogen exchanger 3. This model is 100.0
KOG1966|consensus 670 100.0
COG0025429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 100.0
TIGR00831525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 100.0
PRK05326 562 potassium/proton antiporter; Reviewed 100.0
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 100.0
COG3263 574 NhaP-type Na+/H+ and K+/H+ antiporters with a uniq 100.0
KOG4505|consensus467 99.97
PF00999380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 99.96
PRK03562 621 glutathione-regulated potassium-efflux system prot 99.92
COG0475397 KefB Kef-type K+ transport systems, membrane compo 99.92
PRK10669 558 putative cation:proton antiport protein; Provision 99.91
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 99.91
PRK03659 601 glutathione-regulated potassium-efflux system prot 99.91
PLN03159 832 cation/H(+) antiporter 15; Provisional 99.9
KOG1965|consensus575 99.52
COG4651408 RosB Kef-type K+ transport system, predicted NAD-b 99.51
KOG1966|consensus670 99.16
KOG1650|consensus 769 99.13
PRK14853423 nhaA pH-dependent sodium/proton antiporter; Provis 98.25
TIGR00840559 b_cpa1 sodium/hydrogen exchanger 3. This model is 98.1
TIGR00773373 NhaA Na+/H+ antiporter NhaA. These proteins are me 96.93
TIGR00831525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 95.44
PF03812314 KdgT: 2-keto-3-deoxygluconate permease; InterPro: 95.4
PRK03659601 glutathione-regulated potassium-efflux system prot 95.09
PF13593313 DUF4137: SBF-like CPA transporter family (DUF4137) 95.02
PRK09560389 nhaA pH-dependent sodium/proton antiporter; Review 95.02
PRK03562621 glutathione-regulated potassium-efflux system prot 94.85
PF01758187 SBF: Sodium Bile acid symporter family; InterPro: 94.68
PRK09561388 nhaA pH-dependent sodium/proton antiporter; Review 94.67
COG3004390 NhaA Na+/H+ antiporter [Inorganic ion transport an 93.89
PRK14855423 nhaA pH-dependent sodium/proton antiporter; Provis 93.4
PF03601305 Cons_hypoth698: Conserved hypothetical protein 698 92.96
COG0385319 Predicted Na+-dependent transporter [General funct 92.85
PRK14854383 nhaA pH-dependent sodium/proton antiporter; Provis 92.81
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 92.81
PRK14856438 nhaA pH-dependent sodium/proton antiporter; Provis 92.56
PRK10669558 putative cation:proton antiport protein; Provision 92.39
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 92.37
TIGR00808254 malonate_madM malonate transporter, MadM subunit. 92.12
TIGR03802 562 Asp_Ala_antiprt aspartate-alanine antiporter. All 91.92
PF05145318 AmoA: Putative ammonia monooxygenase; InterPro: IP 91.7
PF06965378 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP 91.17
PLN03159 832 cation/H(+) antiporter 15; Provisional 91.01
PF03956191 DUF340: Membrane protein of unknown function (DUF3 90.27
COG2855334 Predicted membrane protein [Function unknown] 90.23
COG0786404 GltS Na+/glutamate symporter [Amino acid transport 89.93
COG0475397 KefB Kef-type K+ transport systems, membrane compo 89.9
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 89.8
TIGR00832328 acr3 arsenical-resistance protein. The first prote 89.74
TIGR00698335 conserved hypothetical integral membrane protein. 89.64
PF06826169 Asp-Al_Ex: Predicted Permease Membrane Region; Int 89.62
TIGR00210398 gltS sodium--glutamate symport carrier (gltS). 89.25
TIGR00783347 ccs citrate carrier protein, CCS family. These pro 88.88
COG0025429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 88.65
COG2431297 Predicted membrane protein [Function unknown] 88.64
COG3180352 AbrB Putative ammonia monooxygenase [General funct 88.19
COG0786404 GltS Na+/glutamate symporter [Amino acid transport 87.97
PF05982327 DUF897: Domain of unknown function (DUF897) ; Inte 87.32
PF03390414 2HCT: 2-hydroxycarboxylate transporter family; Int 86.93
PRK04972 558 putative transporter; Provisional 85.82
TIGR00841286 bass bile acid transporter. Functionally character 84.87
PF05684378 DUF819: Protein of unknown function (DUF819); Inte 84.3
PRK04288232 antiholin-like protein LrgB; Provisional 84.17
PRK03818 552 putative transporter; Validated 83.61
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 82.95
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 82.84
>KOG1965|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.1e-65  Score=535.41  Aligned_cols=402  Identities=46%  Similarity=0.789  Sum_probs=366.3

Q ss_pred             CCCCCCCCCchhhhchhHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccC
Q psy5406         102 EPVLPEKGSAEEERNSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFS  181 (523)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~  181 (523)
                      .+++.++++.++||++++.+++.+++|++|++.+|+++++|++++||++..+++|+++|.+.++.+......+.+...++
T Consensus        18 ~~~~~~~~~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~   97 (575)
T KOG1965|consen   18 TDISSDSSASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFS   97 (575)
T ss_pred             cccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEec
Confidence            34566777788899999999999999999999999999999999999999999999999998887766555555667899


Q ss_pred             hhHhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccH
Q psy5406         182 PTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDP  261 (523)
Q Consensus       182 ~~~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDP  261 (523)
                      |+.|+.++||||+|++||+++++++++|+.+++.++++|++|++.++|.++|+++.....+++++.+|+++||++|||||
T Consensus        98 ~~~ff~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDP  177 (575)
T KOG1965|consen   98 PDLFFLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDP  177 (575)
T ss_pred             ccHHHHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCc
Confidence            99999999999999999999999999999999999999999999999999999876666899999999999999999999


Q ss_pred             HHHHHHHhhCCCChhHHHHHhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406         262 VATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALL  341 (523)
Q Consensus       262 v~v~~il~~~~~~~~l~~ll~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~l  341 (523)
                      |++++|++|++++++++++++|||++|||++||+|+.+..+..+....+ ...+.+..|+..++||..+|+++|.+.+++
T Consensus       178 VtvLaIfnel~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~-~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~  256 (575)
T KOG1965|consen  178 VTVLAIFNELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDW-TAFSAIGNFLYTFFGSLGLGVAIGLISALV  256 (575)
T ss_pred             hHHHHHHHHhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999887654433 344789999999999999999999999999


Q ss_pred             HHHhcCCCCcchHHHHHHHHHHHHHHHHhhcccchh----------------------------------hhHHHHHHHH
Q psy5406         342 LKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSAR----------------------------------TYSKTLVFLI  387 (523)
Q Consensus       342 l~~~~~~~~~~~~~~l~l~~~~l~y~lae~lg~SGi----------------------------------~l~~~~~Fv~  387 (523)
                      +|+.+.|+++..|..+++.++|.+|++||++|+||+                                  .++|+++|+|
T Consensus       257 lK~~~l~~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y  336 (575)
T KOG1965|consen  257 LKFLYLRRTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIY  336 (575)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999                                  3999999999


Q ss_pred             Hhhhhhcc-cccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC----CCcchhhhhhccC-chhHHHHHhHhccc
Q psy5406         388 TGLAIFSF-RHRVE-PALVIWSLILCLVGRACNIFPLAILVNRFREHQ----ITRRMMFIMWFSG-LRGAISYALSLHLE  460 (523)
Q Consensus       388 lG~~~~~~-~~~~~-~~~v~~~~~~~~l~R~~~v~~~~~~~~~~~~~~----i~~~~~~~~~~~G-lRG~valaLal~~~  460 (523)
                      +|+.+.+. .+.+. ..+++++.++++++|++.++|++++.|.+|+++    ++.|++.++||+| +||++++|||+...
T Consensus       337 ~Gl~~f~~~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~  416 (575)
T KOG1965|consen  337 LGLSAFDFQKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDF  416 (575)
T ss_pred             HhHHHhcccceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhc
Confidence            99888664 45666 478899999999999999999999999999988    9999999999999 89999999999655


Q ss_pred             CCcc--hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhCCCCCcccc
Q psy5406         461 FSDE--TRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIG  504 (523)
Q Consensus       461 ~~~~--~~~~i~~~~~~vVl~T~li~g~~~~pl~~~l~~~~~~~~~  504 (523)
                      .+.+  .++.+.+++..+|++|+++.|+++.|++++|..+...+.+
T Consensus       417 ~~~~~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~~  462 (575)
T KOG1965|consen  417 TDSPHTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAAD  462 (575)
T ss_pred             cccccccccEEEEeeeeeeeeeeeeeCCccHHHHHHhccccccccc
Confidence            4433  3588999999999999999999999999999877665543

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 Back     alignment and domain information
>KOG1966|consensus Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4505|consensus Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>KOG1965|consensus Back     alignment and domain information
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1966|consensus Back     alignment and domain information
>KOG1650|consensus Back     alignment and domain information
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 Back     alignment and domain information
>TIGR00773 NhaA Na+/H+ antiporter NhaA Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes Back     alignment and domain information
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>COG0385 Predicted Na+-dependent transporter [General function prediction only] Back     alignment and domain information
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>TIGR00808 malonate_madM malonate transporter, MadM subunit Back     alignment and domain information
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter Back     alignment and domain information
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase Back     alignment and domain information
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>TIGR00832 acr3 arsenical-resistance protein Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters Back     alignment and domain information
>TIGR00210 gltS sodium--glutamate symport carrier (gltS) Back     alignment and domain information
>TIGR00783 ccs citrate carrier protein, CCS family Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2431 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only] Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function Back     alignment and domain information
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom Back     alignment and domain information
>PRK04972 putative transporter; Provisional Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species Back     alignment and domain information
>PRK04288 antiholin-like protein LrgB; Provisional Back     alignment and domain information
>PRK03818 putative transporter; Validated Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query523
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.4 bits (122), Expect = 6e-07
 Identities = 69/527 (13%), Positives = 130/527 (24%), Gaps = 192/527 (36%)

Query: 12  HYTHYNLSTVTQITMQQTMRTL------SFIAE-TCVFAYLGKNISISNTPILTSSTKKE 64
           H+ H+++   T    Q   + +      +F+    C      K++      IL+      
Sbjct: 1   HHHHHHMDFETG-EHQYQYKDILSVFEDAFVDNFDC------KDVQDMPKSILSKEEIDH 53

Query: 65  LLEQLPDIANNVTLAPIVVILPNSTTENGNVSSTSAPEPVLPEKGSAEEERNSSIAIFFV 124
           ++    D  +      +   L                             +   +   FV
Sbjct: 54  IIMS-KDAVSGTLR--LFWTL---------------------------LSKQEEMVQKFV 83

Query: 125 LCVLAL--GILLIHFMLQFHFQYL-PESIAIVFLGALIGMIINLMSNKNIANWHKEETFS 181
             VL +    L    M     +   P  +  +++        + + N N       + F+
Sbjct: 84  EEVLRINYKFL----MSPIKTEQRQPSMMTRMYIEQR-----DRLYNDN-------QVFA 127

Query: 182 PTAFFLVLLPPI--IFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLAD 239
              + +  L P   + ++   L           +L+    G      V+G+G   +   D
Sbjct: 128 K--YNVSRLQPYLKLRQALLELRPAKN------VLID---G------VLGSGKTWV-ALD 169

Query: 240 VAYKLSFVESFAFG--------------------SLISAVDPVATVAIFHAL-------D 272
           V           F                      L+  +DP  T    H+         
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 273 VDPVLNMLVFGESILNDAIAIVLTTSILGSDN-PNMTTWEAVLTGFNHFCLMFFASAGIG 331
           +   L  L        + + +VL        N  N   W A    FN  C +   +    
Sbjct: 230 IQAELRRL-LKSKPYENCL-LVL-------LNVQNAKAWNA----FNLSCKILLTTRFKQ 276

Query: 332 VLFALISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSARTYSKTLVFLITGLA 391
           V   L +A          + SL+    +  T                  K+L+       
Sbjct: 277 VTDFLSAAT-------TTHISLDH-HSMTLT--------------PDEVKSLLLKYLDCR 314

Query: 392 IFSFRHRVEPALVIWSLILCLVGRACNIFPLAI--LVNRFREHQITRRMMFIMW------ 443
                                        P  +  +    R+   T       W      
Sbjct: 315 PQDLPRE-----------------VLTTNPRRLSIIAESIRDGLAT-------WDNWKHV 350

Query: 444 -FSGLRGAISYALSLHLEFSDETRH-----------VIITSTLIIVL 478
               L   I  +L+  LE   E R              I + L+ ++
Sbjct: 351 NCDKLTTIIESSLN-VLE-PAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query523
1zcd_A388 Na(+)/H(+) antiporter 1; membrane protein; 3.45A { 98.83
2l0e_A33 Sodium/hydrogen exchanger 1; transmembrane helix, 98.34
2htg_A28 NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; 98.19
2kbv_A28 Sodium/hydrogen exchanger 1; transmembrane, peptid 97.2
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 97.06
1y4e_A27 Sodium/hydrogen exchanger 1; NHE1 isoform, transme 96.02
2k3c_A33 TMIX peptide; membrane peptide, dodecylphosphochol 93.61
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A Back     alignment and structure
Probab=98.83  E-value=6.2e-09  Score=107.27  Aligned_cols=242  Identities=13%  Similarity=0.130  Sum_probs=157.6

Q ss_pred             hHhHHHhhHHHHHHhhhcCCcHhH----HHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccc
Q psy5406         183 TAFFLVLLPPIIFESGYNLHKGNF----FQNIG--SILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLI  256 (523)
Q Consensus       183 ~~~~~i~Lp~IlF~~G~~l~~~~~----~~~~~--~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGail  256 (523)
                      +..-+-.+.+.+|..|+|+|++.+    ++..+  .....|+.|+++++++     |..      ++....++.--+++.
T Consensus        61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~------~~~~~~~~~~gw~ip  129 (388)
T 1zcd_A           61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLA------FNYADPITREGWAIP  129 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGG------GCCSSTTHHHHTSSS
T ss_pred             HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHH------HhcCChhhhhhhHHH
Confidence            345567788899999999988766    44444  3577788899998665     332      456666688889999


Q ss_pred             cCccHHHHHHHHhhC--CCChhHHHHHhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406         257 SAVDPVATVAIFHAL--DVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLF  334 (523)
Q Consensus       257 saTDPv~v~~il~~~--~~~~~l~~ll~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~  334 (523)
                      .+||-+.++.++..+  ..|..++..+.+-++.||..++++..++.+   ++ .+..   ...    .      .++   
T Consensus       130 ~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~-~~~~---~l~----~------~~~---  189 (388)
T 1zcd_A          130 AATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND-LSMA---SLG----V------AAV---  189 (388)
T ss_dssp             SCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC-CCHH---HHH----H------HHH---
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CC-ccHH---HHH----H------HHH---
Confidence            999999999999986  468999999999999999999999999864   11 1111   110    0      011   


Q ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHhhcccchh---------------------------------hhHH
Q psy5406         335 ALISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSAR---------------------------------TYSK  381 (523)
Q Consensus       335 G~~~~~ll~~~~~~~~~~~~~~l~l~~~~l~y~lae~lg~SGi---------------------------------~l~~  381 (523)
                      .....+++++.+.++   ....+.+  ....++.+|..|.+..                                 .+.-
T Consensus       190 ~~~~~~~l~r~~v~~---~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~il  264 (388)
T 1zcd_A          190 AIAVLAVLNLCGARR---TGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLIL  264 (388)
T ss_dssp             HHHHHHHHHHTTCCC---THHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHhcchh---HHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHH
Confidence            111123334433222   2222222  2355666676666655                                 1456


Q ss_pred             HHH-HHHHhhhhhccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCCCcchhhhhhc-cCchhHHHHH
Q psy5406         382 TLV-FLITGLAIFSFR-HRVEPALVIWSLILCLVGRACNIFPLAILVNRFR----EHQITRRMMFIMWF-SGLRGAISYA  454 (523)
Q Consensus       382 ~~~-Fv~lG~~~~~~~-~~~~~~~v~~~~~~~~l~R~~~v~~~~~~~~~~~----~~~i~~~~~~~~~~-~GlRG~vala  454 (523)
                      +++ |...|+.++... ...+........+..+++|+++++..+++..|.+    +.+.+|++..-+++ +|.||.+++.
T Consensus       265 PlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~  344 (388)
T 1zcd_A          265 PLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIF  344 (388)
T ss_dssp             HHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHH
T ss_pred             HHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHH
Confidence            677 999999985321 1111111122334558999999888888765442    34788988876554 4669999999


Q ss_pred             hHhccc
Q psy5406         455 LSLHLE  460 (523)
Q Consensus       455 Lal~~~  460 (523)
                      .+...-
T Consensus       345 Ia~laf  350 (388)
T 1zcd_A          345 IASLAF  350 (388)
T ss_dssp             HHHHHS
T ss_pred             HHHHhc
Confidence            776543
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens} Back     alignment and structure
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic} Back     alignment and structure
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic} Back     alignment and structure
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens} Back     alignment and structure
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query523
d2yvxa3173 Mg2+ transporter MgtE {Thermus thermophilus [TaxId 90.96
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MgtE membrane domain-like
superfamily: MgtE membrane domain-like
family: MgtE membrane domain-like
domain: Mg2+ transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=90.96  E-value=0.47  Score=40.82  Aligned_cols=143  Identities=13%  Similarity=0.152  Sum_probs=77.6

Q ss_pred             CCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhh-------------h---cCCcHhHHHh
Q psy5406         146 LPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESG-------------Y---NLHKGNFFQN  209 (523)
Q Consensus       146 lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G-------------~---~l~~~~~~~~  209 (523)
                      +|-.+..++.|++-+.+...+++ .         ++.......++|.++=.+|             +   ++++++++|.
T Consensus        11 lpWL~i~l~~~~~~a~ii~~Fe~-~---------l~~~~~La~fiPli~~~gGN~G~Qs~ti~iR~La~g~i~~~~~~~~   80 (173)
T d2yvxa3          11 VRWLVILILTGMVTSSILQGFES-V---------LEAVTALAFYVPVLLGTGGNTGNQSATLIIRALATRDLDLRDWRRV   80 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCT-T---------TTTTTSCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCSCSSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-H---------HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcccccchhHHHH
Confidence            79999999999998887654322 1         1222233345566554433             2   6677777666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCCChhHHHHHhhhhhccc
Q psy5406         210 IGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILND  289 (523)
Q Consensus       210 ~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~~~~l~~ll~gES~lND  289 (523)
                      .+.=+..+...-.+..++.+...|+.+.  ...+.....++++..++++.-=+..-=+++++|.||....--. .+.+||
T Consensus        81 l~kE~~vgll~G~~l~~i~~~~~~~~~~--~~l~~vi~~sl~~~~~ia~~~G~~lPlll~klg~DPA~aS~P~-itti~D  157 (173)
T d2yvxa3          81 FLKEMGVGLLLGLTLSFLLVGKVYWDGH--PLLLPVVGVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPL-VATLSD  157 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSC--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCGGGSCSTT-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhH-HHHHHH
Confidence            6544444433333333444455555431  1122222333333333333322233346788899887754222 467899


Q ss_pred             hhHHHHHHHHHh
Q psy5406         290 AIAIVLTTSILG  301 (523)
Q Consensus       290 ~~aivlf~~~~~  301 (523)
                      .+++..|..+-.
T Consensus       158 i~g~~iyf~iA~  169 (173)
T d2yvxa3         158 VTGLLIYLSVAR  169 (173)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988876544