Conserved Domains and Related Protein Families
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
88
KOG3546|consensus 1167
99.87 smart00210 184
TSPN Thrombospondin N-terminal -like domains. Hepa
99.72 KOG3546|consensus 1167
98.86 PF02210 128
Laminin_G_2: Laminin G domain; InterPro: IPR012680
98.64 smart00282 135
LamG Laminin G domain.
98.36 cd00110 151
LamG Laminin G domain; Laminin G-like domains are
98.29 PF13385 157
Laminin_G_3: Concanavalin A-like lectin/glucanases
98.01 PF00054 131
Laminin_G_1: Laminin G domain; InterPro: IPR012679
97.53 smart00159 206
PTX Pentraxin / C-reactive protein / pentaxin fami
97.29 cd00152 201
PTX Pentraxins are plasma proteins characterized b
97.13 PF00354 195
Pentaxin: Pentaxin family; InterPro: IPR001759 Pen
97.05 smart00560 133
LamGL LamG-like jellyroll fold domain.
94.54 KOG3514|consensus 1591
93.35 PF06439 185
DUF1080: Domain of Unknown Function (DUF1080); Int
91.73 PF02057 669
Glyco_hydro_59: Glycosyl hydrolase family 59; Inte
88.5 KOG1834|consensus 952
87.6 KOG3516|consensus 1306
84.46 KOG3516|consensus 1306
84.2
>KOG3546|consensus
Back Hide alignment and domain information
Probab=99.87 E-value=4e-23 Score=168.05 Aligned_cols=85 Identities=29% Similarity=0.488 Sum_probs=82.4
Q ss_pred CceEEEEecCCCCccceeeeEEECCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCC
Q psy5411 1 MNLTLLYTDVTKFSTTQPIASFLIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPI 80 (88)
Q Consensus 1 ~~i~l~Ytd~~~~~~s~~~asF~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~ 80 (88)
|+|+||||+++ +..++++|+|++|.|.++|+|||++|++..|+||+|||+.++.++.||.+.|.|++++.||+||||++
T Consensus 130 q~i~l~ytepg-~~~s~~aa~f~~p~~~~~w~~~a~~v~g~~v~l~v~cee~~r~p~~rss~~l~~e~~ag~f~~~ag~~ 208 (1167)
T KOG3546|consen 130 QDISLLYTEPG-AGQTHTAASFRLPAFVGQWTHLALSVAGGFVALYVDCEEFQRMPLARSSRGLELEPGAGLFVAQAGGA 208 (1167)
T ss_pred ceeEEEeccCC-CCccchhheeccchhhchhhheeeeecCceEEEEechHHhcccchhccccceeecCCcceEEeccCCC
Confidence 78999999998 77899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcee
Q psy5411 81 IKGALD 86 (88)
Q Consensus 81 ~~~~f~ 86 (88)
..++|.
T Consensus 209 ~~~~f~ 214 (1167)
T KOG3546|consen 209 DPDKFQ 214 (1167)
T ss_pred ChHhhh
Confidence 999986
>smart00210 TSPN Thrombospondin N-terminal -like domains
Back Show alignment and domain information
Probab=99.72 E-value=5e-17 Score=113.72 Aligned_cols=79 Identities=29% Similarity=0.418 Sum_probs=58.0
Q ss_pred eEEEEecCCCCccceeeeEEE-CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCCC
Q psy5411 3 LTLLYTDVTKFSTTQPIASFL-IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPII 81 (88)
Q Consensus 3 i~l~Ytd~~~~~~s~~~asF~-v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~~ 81 (88)
+.|+|.+.+ + ..+.++|+ ++++||+|||++|+|++++|+||+||+++++++++|..++ .++. ++++++.+....
T Consensus 93 ~~~~~~~~~-g--~~~~~~f~~~~l~dg~WH~lal~V~~~~v~LyvDC~~~~~~~l~~~~~~-~~~~-~g~~~~g~~~~~ 167 (184)
T smart00210 93 LLLRYQGVD-G--KQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGQP-PIDT-DGIEVRGAQAAD 167 (184)
T ss_pred EEEEECCCC-C--cEEEEeecCCccccCCceEEEEEEeCCEEEEEECCccccceecCCcccc-cccc-cceEEEeeccCC
Confidence 556665443 2 45678998 8999999999999999999999999999999999998753 3343 333333343343
Q ss_pred CCcee
Q psy5411 82 KGALD 86 (88)
Q Consensus 82 ~~~f~ 86 (88)
++.|+
T Consensus 168 ~~~f~ 172 (184)
T smart00210 168 RKPFQ 172 (184)
T ss_pred CCcce
Confidence 56665
Heparin-binding and cell adhesion domain of thrombospondin
>KOG3546|consensus
Back Show alignment and domain information
Probab=98.86 E-value=1.4e-10 Score=95.49 Aligned_cols=85 Identities=19% Similarity=0.166 Sum_probs=76.6
Q ss_pred CceEEEEecCCCCccceeeeEEECCCCCCCceEEEEE--EECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecC
Q psy5411 1 MNLTLLYTDVTKFSTTQPIASFLIPAPTGKYFKFALK--VTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAG 78 (88)
Q Consensus 1 ~~i~l~Ytd~~~~~~s~~~asF~v~~~d~~Whr~als--V~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG 78 (88)
|+++++|+.++ ...-..+++|-|.+|. +|+.|++. +..|+|++|+||+-.++..+.|.|++++++.+|+++|+|||
T Consensus 1039 qdlSlIvrqAd-rnigpivnlkGvalfp-kWnSIfsg~~glsdkvsfiYsfdgRdttlvprwPqklvwhgsSplgirlag 1116 (1167)
T KOG3546|consen 1039 QDLSLIVRQAD-RNIGPIVNLKGVALFP-KWNSIFSGSEGLSDKVSFIYSFDGRDTTLVPRWPQKLVWHGSSPLGIRLAG 1116 (1167)
T ss_pred hhHHHHHHHHh-hhccceeeccceeecc-chHhhhcccccccCCcceeEeecCccccccCCcchhheecCCCccchhhhh
Confidence 56778888887 4445677889888888 99999999 99999999999999999999999999999999999999999
Q ss_pred CCCCCceec
Q psy5411 79 PIIKGALDI 87 (88)
Q Consensus 79 ~~~~~~f~~ 87 (88)
+.+.+.|++
T Consensus 1117 sycegwrtv 1125 (1167)
T KOG3546|consen 1117 SYCEGWRTV 1125 (1167)
T ss_pred ccccceeEe
Confidence 999998874
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []
Back Show alignment and domain information
Probab=98.64 E-value=4.7e-07 Score=57.28 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=54.8
Q ss_pred eEEEEecCCCCccceeeeEEECCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCCC
Q psy5411 3 LTLLYTDVTKFSTTQPIASFLIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPII 81 (88)
Q Consensus 3 i~l~Ytd~~~~~~s~~~asF~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~~ 81 (88)
+.+.|.-.+ . .........+..|++||++.+...++.++|.+||.+........... ..++....+|||..-+..
T Consensus 31 l~~~~~~g~-~--~~~~~~~~~~~~dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~~-~~~~~~~~l~iGg~~~~~ 105 (128)
T PF02210_consen 31 LVVRYNLGG-S--EIVTTFSNSNLNDGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSSS-DSLDPDGSLYIGGLPESN 105 (128)
T ss_dssp EEEEEESSS-S--EEEEEECSSSSTSSSEEEEEEEEETTEEEEEETTSEEEEEESSSTTH-HCBESEEEEEESSTTTTC
T ss_pred EEEEEEccc-c--ceeeeccCccccccceeEEEEEEeeeeEEEEecCccceEEeccccce-ecccCCCCEEEecccCcc
Confidence 455555432 1 22333344577999999999999999999999999998777665442 356667789999987765
The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
>smart00282 LamG Laminin G domain
Back Show alignment and domain information
Probab=98.36 E-value=4e-06 Score=54.57 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=41.7
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCC
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPI 80 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~ 80 (88)
.+..||+||++++...++.++|++|+....+.....+. -.++....+|||.+.+.
T Consensus 57 ~~~~dg~WH~v~i~~~~~~~~l~VD~~~~~~~~~~~~~--~~l~~~~~l~iGG~p~~ 111 (135)
T smart00282 57 TPLNDGQWHRVAVERNGRRVTLSVDGENPVSGESPGGL--TILNLDGPLYLGGLPED 111 (135)
T ss_pred eEeCCCCEEEEEEEEeCCEEEEEECCCccccEECCCCc--eEEecCCCcEEccCCch
Confidence 45689999999999999999999999765444333222 34556788999987654
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans
Back Show alignment and domain information
Probab=98.29 E-value=2.1e-06 Score=56.05 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=41.3
Q ss_pred CCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCC
Q psy5411 25 PAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPI 80 (88)
Q Consensus 25 ~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~ 80 (88)
+..||+||++++...++.++|++|+....+....... ..++....+|||.....
T Consensus 76 ~v~dg~Wh~v~i~~~~~~~~l~VD~~~~~~~~~~~~~--~~~~~~~~~~iGg~~~~ 129 (151)
T cd00110 76 PLNDGQWHSVSVERNGRSVTLSVDGERVVESGSPGGS--ALLNLDGPLYLGGLPED 129 (151)
T ss_pred ccCCCCEEEEEEEECCCEEEEEECCccEEeeeCCCCc--eeecCCCCeEEcCCCCc
Confidence 4699999999999999999999999854333322221 14677899999998764
Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A
Back Show alignment and domain information
Probab=98.01 E-value=1.7e-05 Score=50.73 Aligned_cols=52 Identities=29% Similarity=0.451 Sum_probs=39.5
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecC
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAG 78 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG 78 (88)
.+..+++||++++.+++++++||+|++...+........ ..+...++||+.+
T Consensus 80 ~~~~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~~---~~~~~~~~iG~~~ 131 (157)
T PF13385_consen 80 SNLPDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSNIS---LNSNGPLFIGGSG 131 (157)
T ss_dssp S---TT-EEEEEEEEETTEEEEEETTEEETTCTEESSSS---TTSCCEEEESS-S
T ss_pred cccCCCCEEEEEEEEECCeEEEEECCEEEEeEeccCCcC---CCCcceEEEeecC
Confidence 455689999999999999999999999998877766432 2567799999987
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []
Back Show alignment and domain information
Probab=97.53 E-value=0.00099 Score=43.85 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=46.4
Q ss_pred eEEEEecCCCCccceeeeEEECCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecC
Q psy5411 3 LTLLYTDVTKFSTTQPIASFLIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAG 78 (88)
Q Consensus 3 i~l~Ytd~~~~~~s~~~asF~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG 78 (88)
+.|.|.-.. .+ ....-..+..||+||++.+...+..++|-+|=++..+....-.+. ..++....||||-.-
T Consensus 31 l~~~~~~G~-~~---~~~~~~~~i~dg~wh~v~~~r~~~~~~L~Vd~~~~~~~~s~~~~~-~~l~~~~~lyvGG~p 101 (131)
T PF00054_consen 31 LEFRYNLGS-GP---ASLRSPQKINDGKWHTVSVSRNGRNGSLSVDGEEVVTGESPSGAT-QSLDVDGPLYVGGLP 101 (131)
T ss_dssp EEEEEESSS-EE---EEEEESSETTSSSEEEEEEEEETTEEEEEETTSEEEEEEECSSSS-SSCEECSEEEESSSS
T ss_pred EEEEEeCCC-cc---ceecCCCccCCCcceEEEEEEcCcEEEEEECCccceeeecCCccc-cccccccCEEEccCC
Confidence 556664333 22 122233356899999999999999999999977663333333332 235556779999876
The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family
Back Show alignment and domain information
Probab=97.29 E-value=0.0014 Score=46.58 Aligned_cols=64 Identities=16% Similarity=0.271 Sum_probs=45.0
Q ss_pred eEEECCCCCCCceEEEEEEE--CCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCCCCCcee
Q psy5411 20 ASFLIPAPTGKYFKFALKVT--LDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPIIKGALD 86 (88)
Q Consensus 20 asF~v~~~d~~Whr~alsV~--~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~~~~~f~ 86 (88)
..++++..+++||++++.-. .++++||+|=+......+... -.+.+++.+.|||.-....+.|+
T Consensus 81 ~~~~~~~~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~~~~~~g---~~i~~~G~lvlGq~qd~~gg~f~ 146 (206)
T smart00159 81 VQFPVPESDGKWHHICTTWESSSGIAELWVDGKPGVRKGLAKG---YTVKPGGSIILGQEQDSYGGGFD 146 (206)
T ss_pred EEecccccCCceEEEEEEEECCCCcEEEEECCEEcccccccCC---cEECCCCEEEEEecccCCCCCCC
Confidence 34556678999999999987 567999999887633333221 24677899999997555445453
This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity
Back Show alignment and domain information
Probab=97.13 E-value=0.0033 Score=44.34 Aligned_cols=57 Identities=14% Similarity=0.243 Sum_probs=42.3
Q ss_pred EEECCCCCCCceEEEEEEE--CCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCC
Q psy5411 21 SFLIPAPTGKYFKFALKVT--LDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPI 80 (88)
Q Consensus 21 sF~v~~~d~~Whr~alsV~--~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~ 80 (88)
.+..+..+++||+++++-. .+.++||+|=+++.+..+... ..+.+++.+.|||.-..
T Consensus 82 ~~~~~~~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~~~~~---~~~~~~g~l~lG~~q~~ 140 (201)
T cd00152 82 TFKVPESDGAWHHICVTWESTSGIAELWVNGKLSVRKSLKKG---YTVGPGGSIILGQEQDS 140 (201)
T ss_pred EEeccCCCCCEEEEEEEEECCCCcEEEEECCEEeccccccCC---CEECCCCeEEEeecccC
Confidence 4445568999999999987 567999999988866654332 24567889999986433
CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits
Back Show alignment and domain information
Probab=97.05 E-value=0.0032 Score=44.76 Aligned_cols=64 Identities=22% Similarity=0.292 Sum_probs=46.3
Q ss_pred eEEECCCCCCCceEEEEEEE--CCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCCCCCcee
Q psy5411 20 ASFLIPAPTGKYFKFALKVT--LDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPIIKGALD 86 (88)
Q Consensus 20 asF~v~~~d~~Whr~alsV~--~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~~~~~f~ 86 (88)
..+..+..+++||++.++=+ .+.+.||+|=....+..+.. ...+.+++++.+||--....|.|+
T Consensus 75 ~~~~~~~~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~~~~---g~~i~~gG~~vlGQeQd~~gG~fd 140 (195)
T PF00354_consen 75 VSFSGPIRDGQWHHICVTWDSSTGRWQLYVDGVRLSSTGLAT---GHSIPGGGTLVLGQEQDSYGGGFD 140 (195)
T ss_dssp EEEEECS-TSS-EEEEEEEETTTTEEEEEETTEEEEEEESST---T--B-SSEEEEESS-BSBTTBTCS
T ss_pred eEeccccCCCCcEEEEEEEecCCcEEEEEECCEecccccccC---CceECCCCEEEECccccccCCCcC
Confidence 45666778999999999855 48999999999665554432 245678999999999999888887
Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
>smart00560 LamGL LamG-like jellyroll fold domain
Back Show alignment and domain information
Probab=94.54 E-value=0.057 Score=35.44 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=30.3
Q ss_pred CCceEEEEEEEC--CeEEEEECCccceeEEEecCCCceeeecCcEEEEe
Q psy5411 29 GKYFKFALKVTL--DGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLG 75 (88)
Q Consensus 29 ~~Whr~alsV~~--~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iG 75 (88)
++||++++..++ ++++||+|=+++.+.... + ......+.||
T Consensus 61 ~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~--~----~~~~~~~~iG 103 (133)
T smart00560 61 GVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ--P----SPSSGNLPQG 103 (133)
T ss_pred CCEEEEEEEEECCCCeEEEEECCEEccccccC--C----cccCCceEEe
Confidence 999999999998 899999998887544321 2 1234567777
>KOG3514|consensus
Back Show alignment and domain information
Probab=93.35 E-value=0.15 Score=45.30 Aligned_cols=52 Identities=12% Similarity=0.032 Sum_probs=42.5
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeec
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQA 77 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqa 77 (88)
++..|++||++-|-=.-.+++|.+|=.++......|+-+...+ ++-+|||-.
T Consensus 100 ~~i~D~~WH~v~i~r~~e~t~L~vDgv~~~~~~~~~~f~fg~i--asdvfVGGl 151 (1591)
T KOG3514|consen 100 VRIDDDKWHTVTIFRSWENTKLEVDGVLVFKILNQRSFVFGNI--ASDVFVGGL 151 (1591)
T ss_pred ceecCCceeEEEEEeccccceEEechhhhhhhhhcceeeeeee--ehheeecCC
Confidence 5678999999999999999999999988877777776654444 458999854
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function
Back Show alignment and domain information
Probab=91.73 E-value=0.24 Score=33.32 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=26.9
Q ss_pred EECCCCCCCceEEEEEEECCeEEEEECCccceeEE
Q psy5411 22 FLIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTR 56 (88)
Q Consensus 22 F~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~ 56 (88)
.......++||++-|.|.+++++.++|=+++....
T Consensus 120 ~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~ 154 (185)
T PF06439_consen 120 VNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFT 154 (185)
T ss_dssp S--S--TTSEEEEEEEEETTEEEEEETTEEEEEEE
T ss_pred ccccCCCCceEEEEEEEECCEEEEEECCEEEEEEE
Confidence 33445789999999999999999999998775544
; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3
Back Show alignment and domain information
Probab=88.50 E-value=1.9 Score=36.46 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=31.1
Q ss_pred eeeEEECCCCCCCceEEEEEEECCeEEEEECCccceeEEEe
Q psy5411 18 PIASFLIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVV 58 (88)
Q Consensus 18 ~~asF~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~ 58 (88)
.+++-..+...++||+++|.++++.++=.+|=..+.+....
T Consensus 600 ~l~~G~~~~~~~~WhtltL~~~g~~~ta~lng~~l~~~~~~ 640 (669)
T PF02057_consen 600 TLASGTADIGAGKWHTLTLTISGSTATAMLNGTVLWTDVDS 640 (669)
T ss_dssp EEEEEE-S--TT-EEEEEEEEETTEEEEEETTEEEEEEEE-
T ss_pred EEeeeeecccCCeEEEEEEEEECCEEEEEECCEEeEEeccc
Confidence 45677777888999999999999999999999999765543
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
>KOG1834|consensus
Back Show alignment and domain information
Probab=87.60 E-value=0.92 Score=38.72 Aligned_cols=51 Identities=24% Similarity=0.416 Sum_probs=37.0
Q ss_pred eEEEEe-cCCCCccceeeeEEE--CCC-CCCCceEEEEEEECCeEEEEECCcccee
Q psy5411 3 LTLLYT-DVTKFSTTQPIASFL--IPA-PTGKYFKFALKVTLDGVTAFVNCEEIES 54 (88)
Q Consensus 3 i~l~Yt-d~~~~~~s~~~asF~--v~~-~d~~Whr~alsV~~~~VtL~~DC~~~~~ 54 (88)
+.|+|. |++ ...+...|-|. .|. -|+.||..+|-|+.-.||||+|=...+.
T Consensus 413 l~fllr~d~~-~~~~fRpaef~Wkl~qVCD~EWH~Y~ln~efp~VtlyvDG~Sfep 467 (952)
T KOG1834|consen 413 LEFLLRRDAG-ATSDFRPAEFHWKLPQVCDNEWHHYVLNVEFPDVTLYVDGKSFEP 467 (952)
T ss_pred EEEEEccCcc-ccccccchheeccchhhhhhhhheeEEeecCceEEEEEcCcccCC
Confidence 445554 444 33344446665 444 8999999999999999999999987754
>KOG3516|consensus
Back Show alignment and domain information
Probab=84.46 E-value=2.4 Score=38.09 Aligned_cols=50 Identities=14% Similarity=0.274 Sum_probs=39.2
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEee
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQ 76 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGq 76 (88)
..+.||+||.++++.+.+...+-+|=.+..-.+... ++...++.+-|+|.
T Consensus 441 ~~lnDG~WHsv~~~ak~n~~~~~iDd~~~~~~~~~~---p~~V~tg~tY~fgg 490 (1306)
T KOG3516|consen 441 LKLNDGAWHSVSFNAKKNRLVLMIDDGEAEIAPDSK---PLQVYTGTTYYFGG 490 (1306)
T ss_pred ccCCCCceEEEEEEeecceeEEEEcCcccccccCCc---cEEEEeCCeeEecc
Confidence 466899999999999999999988877765554443 35567788888884
>KOG3516|consensus
Back Show alignment and domain information
Probab=84.20 E-value=4.5 Score=36.39 Aligned_cols=73 Identities=8% Similarity=0.028 Sum_probs=49.0
Q ss_pred ceEEEEecCCCCccceeeeEEECCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeec
Q psy5411 2 NLTLLYTDVTKFSTTQPIASFLIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQA 77 (88)
Q Consensus 2 ~i~l~Ytd~~~~~~s~~~asF~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqa 77 (88)
+++|-|-..+ ++....+ .=+-+.-|++||.++..-...+..|-||=-+...++..=.| ..-++--+.+|||-+
T Consensus 845 ~vtf~~dvgn-Gp~~~~V-~s~t~~nD~qWH~V~~Ern~K~a~LqVD~~~~~~r~sp~~~-~~~L~l~s~l~vGgt 917 (1306)
T KOG3516|consen 845 EVTFAFDVGN-GPSQLTV-RSPTELNDNQWHQVRAERNSKEASLQVDGLPKSIRTSPIPG-TRLLQLYSSLFVGGT 917 (1306)
T ss_pred ceEEEEEcCC-CceeEEE-cCCcccCCCceEEEEEEeccccceEEEcCcccceecCCCCC-EEEEEeccceecccc
Confidence 4566665544 4432222 11235589999999999999999999998777666553323 344666788898863
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 88
d2erfa1 206
Thrombospondin 1 N-terminal domain {Human (Homo sa
99.37 d2r1da1 177
Ligand-binding domain of neurexin 1beta {Rat (Ratt
97.84 d1dyka2 185
Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:
97.8 d1dyka1 189
Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:
97.34 d1pz7a_ 195
Agrin {Chicken (Gallus gallus) [TaxId: 9031]}
97.26 d1d2sa_ 170
Sex hormone-binding globulin {Human (Homo sapiens)
97.2 d1h30a1 191
Growth-arrest-specific protein Gas6 {Human (Homo s
97.06 d1a8da1 247
Tetanus neurotoxin {Clostridium tetani [TaxId: 151
97.01 d1b09a_ 206
C-reactive protein (CRP) {Human (Homo sapiens) [Ta
96.81 d1epwa1 218
Botulinum neurotoxin {Clostridium botulinum, serot
96.69 d1saca_ 204
Serum amyloid P component (SAP) {Human (Homo sapie
96.53 d1h30a2 218
Growth-arrest-specific protein Gas6 {Human (Homo s
96.0 d3btaa1 207
Botulinum neurotoxin {Clostridium botulinum, serot
95.52 d2slia1 196
Leech intramolecular trans-sialidase, N-terminal d
93.82 d1oq1a_ 223
Hypothetical protein YesU {Bacillus subtilis [TaxI
91.4 d2ah2a1 225
Trypanosoma sialidase, C-terminal domain {Parasiti
80.51
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Thrombospondin 1 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=7.8e-13 Score=89.23 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=57.7
Q ss_pred ceEEEEecCCCCccceeeeEEECCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCcee---eecCcEEEEeecC
Q psy5411 2 NLTLLYTDVTKFSTTQPIASFLIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELL---FDSASTLYLGQAG 78 (88)
Q Consensus 2 ~i~l~Ytd~~~~~~s~~~asF~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~---~~~~~~l~iGqaG 78 (88)
.+.+.|+..+ . .....++.++.+|++||+++++|++++|+||+||+++.+..+........ ...++.+++|+.+
T Consensus 100 ~l~~~~~~~~-~--~~~~~~~~~~l~d~~Whhva~~~~~~~v~lyvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 176 (206)
T d2erfa1 100 TLDLSLTVQG-K--QHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAELDVPIQSVFTRDLASIARLRIAKGG 176 (206)
T ss_dssp EEEEEEEETT-E--EEEEEESSCCCCSSSEEEEEEEEETTEEEEEETTTEEEEEECSSCGGGTCCTTHHHHEEEEESCCT
T ss_pred EEEEEEeCCC-c--eEEEEeccccccCCCEEEEEEEEeCCEEEEEECCEEEEeEEccCCcccccCCccceeEEEEEccCC
Confidence 3567777554 2 22334445788999999999999999999999999999988887554322 2236689999876
Q ss_pred CCCCCcee
Q psy5411 79 PIIKGALD 86 (88)
Q Consensus 79 ~~~~~~f~ 86 (88)
.. +.|+
T Consensus 177 ~~--~~F~ 182 (206)
T d2erfa1 177 VN--DNFQ 182 (206)
T ss_dssp TT--CBCC
T ss_pred CC--CCCE
Confidence 43 4453
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]}
Back Show information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.84 E-value=3.8e-05 Score=49.58 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=39.7
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCC
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGP 79 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~ 79 (88)
.+..||+||++.++..++.++|.+|-......... ......++....+|||..-+
T Consensus 85 ~~vnDg~WH~V~v~~~~~~~~L~VD~~~~~~~~~~-~~~~~~~~~~~~l~iGG~p~ 139 (177)
T d2r1da1 85 AIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPA-GRQLTIFNSQATIIIGGKEQ 139 (177)
T ss_dssp SCCCSSSCEEEEEEEETTEEEEEETTSCCEEECCS-SCCCCCBCSEEEEEESSTTT
T ss_pred ceecCCCEEEEEEEEECCEEEEEECCeeeEEEecc-cCccccccccceEEEccCCC
Confidence 45699999999999999999999997765333221 12223456667899996543
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.80 E-value=2.3e-05 Score=51.07 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=37.4
Q ss_pred CCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeec
Q psy5411 25 PAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQA 77 (88)
Q Consensus 25 ~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqa 77 (88)
...||+||++.++..++.++|.+|-............ ..++....+|||-.
T Consensus 83 ~l~Dg~WH~V~i~~~~~~~~l~vD~~~~~~~~~~~~~--~~~~~~~~lyiGG~ 133 (185)
T d1dyka2 83 HMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSAS--TSADTNDPVFVGGF 133 (185)
T ss_dssp STTSSSCEEEEEEEETTEEEEEETTEEEEEECCCTTC--CCBCCCBCCEESCC
T ss_pred eecCCCEEEEEEEEcCCEEEEEEeecceeEEeCCCCc--ceeecCCCEEEeCc
Confidence 4479999999999999999999998766544332222 23455667999853
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.34 E-value=0.00085 Score=43.59 Aligned_cols=51 Identities=14% Similarity=0.254 Sum_probs=36.0
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeec
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQA 77 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqa 77 (88)
.+..||+||++.+.-.++.++|.+|=..... ... +..-.++..+.||||-+
T Consensus 93 ~~v~Dg~WH~V~v~~~~~~~~l~VD~~~~~~--~~~-~~~~~l~~~~~lyiGG~ 143 (189)
T d1dyka1 93 TKINDGQWHKIKIVRVKQEGILYVDDASSQT--ISP-KKADILDVVGILYVGGL 143 (189)
T ss_dssp SCCCSSSCEEEEEEEETTEEEEEETTEEEEE--ECS-TTCCCCCCCSEEEESSC
T ss_pred cEeeCCCEEEEEEEEcccEEEEEECCcceee--Ecc-CcccccccccceEEecc
Confidence 4569999999999999999999999543322 111 11223455678999964
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}
Back Show information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.26 E-value=0.0014 Score=42.69 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=36.1
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeec
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQA 77 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqa 77 (88)
.+..||+||++.+...+..++|++|=....+....-.... ++..+.+|||-.
T Consensus 98 ~~v~dg~wh~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~--l~~~~~lyiGG~ 149 (195)
T d1pz7a_ 98 VPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQ--LDTDGALWLGGM 149 (195)
T ss_dssp EECCSSSCEEEEEEEETTEEEEEETTSCCEEEECCSSCCC--EEECCEEEESSC
T ss_pred ceecCCCEEEEEEEEcCcEEEEEEeccceeeeeCCCCcee--eecCCceEEccc
Confidence 3568999999999999999999999443333333222222 344578999854
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.0013 Score=42.22 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=35.6
Q ss_pred ECCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeec
Q psy5411 23 LIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQA 77 (88)
Q Consensus 23 ~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqa 77 (88)
..+..||+||.+.+...++.++|.+|=+... -.+++ .......||||-.
T Consensus 80 ~~~~~dg~WH~V~i~~~~~~~~L~VD~~~~~---~~~~~---~~~~~~~lyiGG~ 128 (170)
T d1d2sa_ 80 GPRLDDGRWHQVEVKMEGDSVLLEVDGEEVL---RLRQV---SGHPIMRIALGGL 128 (170)
T ss_dssp SCCCCSSSCEEEEEEEETTEEEEEETTEEEE---EETTC---CCCCEEEEEESSC
T ss_pred ccccCCCceEEEEEEEECCEEEEEECCeeeE---eeecC---CCccCCeEEEccc
Confidence 3466899999999999999999999955432 22333 2345567999943
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.0019 Score=41.62 Aligned_cols=54 Identities=11% Similarity=-0.009 Sum_probs=36.6
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCcee-eecCcEEEEeec
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELL-FDSASTLYLGQA 77 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~-~~~~~~l~iGqa 77 (88)
.+..||+||++.+...++.++|.+|=+...+........... ......||||-.
T Consensus 112 ~~v~Dg~WH~V~v~r~~~~~~l~VD~~~~~~~~~~~~~~~~~~~~~~~~lyiGG~ 166 (191)
T d1h30a1 112 PVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGI 166 (191)
T ss_dssp EECCSSCCEEEEEEECSSEEEEEETTEEEEEEECCSCSSEEETTEEECEEEESSC
T ss_pred ccccCCCEEEEEEEEeCCEEEEEECCcceEEEEccCccccccccccCceEEEEee
Confidence 355899999999999999999999965554444443322111 112356999953
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]}
Back Show information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Clostridium neurotoxins, the second last domain
domain: Tetanus neurotoxin
species: Clostridium tetani [TaxId: 1513]
Probab=97.01 E-value=0.0013 Score=43.26 Aligned_cols=53 Identities=8% Similarity=0.004 Sum_probs=39.7
Q ss_pred CCCCCCceEEEEEEECC-eEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCC
Q psy5411 25 PAPTGKYFKFALKVTLD-GVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPI 80 (88)
Q Consensus 25 ~~~d~~Whr~alsV~~~-~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~ 80 (88)
...+++||++++...+. ++++|+|.+++.+....... .......+.+|..+..
T Consensus 162 ~~~~~~W~hia~t~d~~~~~~lYinG~~~~~~~~~~~~---~~~~~~~~~ig~~~~~ 215 (247)
T d1a8da1 162 AYLANKWVFITITNDRLSSANLYINGVLMGSAEITGLG---AIREDNNITLKLDRCN 215 (247)
T ss_dssp CSSSSSCEEEEEEECTTSEEEEEETTEEEEEEECTTCC---CCCCCSEEEEEEESCC
T ss_pred cccCCcEEEEEEEEeCCCcEEEEECCEEEEeEEecccc---ccCCCCeEEEEEcCCC
Confidence 34789999999999875 89999999999877765433 3445667777765544
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Pentraxin (pentaxin)
domain: C-reactive protein (CRP)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.0037 Score=40.28 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=43.8
Q ss_pred EEECCCCCCCceEEEEEEECC--eEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCCC
Q psy5411 21 SFLIPAPTGKYFKFALKVTLD--GVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPII 81 (88)
Q Consensus 21 sF~v~~~d~~Whr~alsV~~~--~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~~ 81 (88)
....+..+++||++++...+. .+.||+|=+++.+...... ......+.+.||+.....
T Consensus 83 ~~~~~~~~~~W~Hvavt~d~~~g~~~lYinG~~~~~~~~~~~---~~~~~~~~~~iG~~~~~~ 142 (206)
T d1b09a_ 83 LFEVPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKSLKKG---YTVGAEASIILGQEQDSF 142 (206)
T ss_dssp EEECCCCCCSCEEEEEEEETTTCEEEEEETTEECCCEECCTT---CCBCSSCEEEESSCCSBT
T ss_pred EecCcccCCcEEEEEEEEeccCCeEEEEECCeEEeeecccCC---ceeccCCcEEeccccccc
Confidence 344566899999999999875 6999999988877765542 234667899999865543
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]}
Back Show information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Clostridium neurotoxins, the second last domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype B [TaxId: 1491]
Probab=96.69 E-value=0.0029 Score=39.97 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=39.5
Q ss_pred CCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCC
Q psy5411 25 PAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPI 80 (88)
Q Consensus 25 ~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~ 80 (88)
+..+++||++++...+..+++|+|.+.+.+....-. ........+.+|..+..
T Consensus 134 ~~~~~~W~hi~~t~d~~~~~iYvNG~l~~~~~~~~~---~~~~~~~~~~~g~~~~~ 186 (218)
T d1epwa1 134 SEYINRWFFVTITNNLNNAKIYINGKLESNTDIKDI---REVIANGEIIFKLDGDI 186 (218)
T ss_dssp CSSTTSCEEEEEEECSSEEEEEETTEEEEEEECSSC---CCCCCCSEEEEEEEESC
T ss_pred cccCCcEEEEEEEECCCEEEEEECCEEEeeeeccCc---ccccCCCcEEEEEecCC
Confidence 346799999999999999999999999877665422 23344567777765543
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Pentraxin (pentaxin)
domain: Serum amyloid P component (SAP)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.0081 Score=38.74 Aligned_cols=63 Identities=8% Similarity=0.077 Sum_probs=45.9
Q ss_pred eEEECCCCCCCceEEEEEEECC--eEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCCCCCce
Q psy5411 20 ASFLIPAPTGKYFKFALKVTLD--GVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPIIKGAL 85 (88)
Q Consensus 20 asF~v~~~d~~Whr~alsV~~~--~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~~~~~f 85 (88)
.+...+..+++||++++...+. ++++|+|=.++.+....- . ........+.|||....+.+.|
T Consensus 80 ~~~~~~~~~~~W~Hv~~t~d~~~g~~~~YiNG~~~~~~~~~~-~--~~~~~~~~~~iG~~~~~~gg~~ 144 (204)
T d1saca_ 80 VTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQ-G--YFVEAQPKIVLGQEQDSYGGKF 144 (204)
T ss_dssp EEEECCCCSSCCEEEEEEEETTTCEEEEEETTEECCCEECCT-T--CCBCSSCEEEESSCCSSSSCCC
T ss_pred EEecccccCCceEEEEEEEecCCCcEEEEECCEEEeeecccc-e--eeeecccceeccccccccCCCC
Confidence 3445667899999999999865 799999988886655432 2 2356677899999766554443
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0075 Score=39.37 Aligned_cols=56 Identities=14% Similarity=0.034 Sum_probs=35.6
Q ss_pred ECCCCCCCceEEEEEEECCeEEEEECCccceeEEEe-cCCC-----ceeeecCcEEEEeecC
Q psy5411 23 LIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVV-RNPQ-----ELLFDSASTLYLGQAG 78 (88)
Q Consensus 23 ~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~-R~p~-----~l~~~~~~~l~iGqaG 78 (88)
..+..||+||++.+...++.++|.+|=......... ..+. ....+....+|||-.-
T Consensus 106 ~~~lnDg~WH~V~v~~~~~~~~L~VD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyvGG~P 167 (218)
T d1h30a2 106 EIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFAGGLP 167 (218)
T ss_dssp ECCTTSSCCEEEEEEEETTEEEEEETTEECEESSCHHHHHHHHHHHHHHHTSCCEEEESCCC
T ss_pred ccccCCCCeEEEEEEEECCEEEEEEecccceeeeccccccccccccceecccCceeeccCCC
Confidence 346689999999999999999999995433211100 0000 0113345689998864
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}
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class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Clostridium neurotoxins, the second last domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype A [TaxId: 1491]
Probab=95.52 E-value=0.031 Score=35.24 Aligned_cols=53 Identities=6% Similarity=0.077 Sum_probs=39.0
Q ss_pred CCCCCCceEEEEEEECC-eEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCC
Q psy5411 25 PAPTGKYFKFALKVTLD-GVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPI 80 (88)
Q Consensus 25 ~~~d~~Whr~alsV~~~-~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~ 80 (88)
+..+++||++++...++ .++||+|=+.+.+..+.=.+ .+++...+.+|--|..
T Consensus 136 ~~~~~~W~Hva~t~d~~~~~~lYiNG~lv~s~~~s~~~---~~~~~~~~~~g~~~~~ 189 (207)
T d3btaa1 136 SDYINRWIFVTITNNRLNNSKIYINGRLIDQKPISNLG---NIHASNNIMFKLDGCR 189 (207)
T ss_dssp CSSTTSEEEEEEEECTTSEEEEEETTEEEEEEECTTCC---CCCCCSEEEEEEESCC
T ss_pred eecCCcEEEEEEEEcCCCcEEEEECCEEEEeEEecCcc---ccccCCcEEEEECCCC
Confidence 45789999999999875 69999999999877665433 2455556666665544
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]}
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class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Leech intramolecular trans-sialidase, N-terminal domain
domain: Leech intramolecular trans-sialidase, N-terminal domain
species: North american leech (Macrobdella decora) [TaxId: 6405]
Probab=93.82 E-value=0.034 Score=34.82 Aligned_cols=50 Identities=16% Similarity=0.054 Sum_probs=33.0
Q ss_pred CCCCceEEEEEEECC--eEEEEECCccceeEEEecCCCceeeecCcEEEEee
Q psy5411 27 PTGKYFKFALKVTLD--GVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQ 76 (88)
Q Consensus 27 ~d~~Whr~alsV~~~--~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGq 76 (88)
.+++||++++...+. +++||+|=+++.+.........-.......+++|.
T Consensus 106 ~~~~W~hva~t~d~~~~~~~lYvnG~~~~~~~~~~~~~~~~~~~~~~~~ig~ 157 (196)
T d2slia1 106 GERVFNTVALKADAANKQCRLFANGELLATLDKDAFKFISDITGVDNVTLGG 157 (196)
T ss_dssp TEECCEEEEEEEETTTTEEEEEETTEEEEEEECSSCCCGGGSTTCCEEEESS
T ss_pred cCCcEEEEEEEEECCCCEEEEEECCeEEEEEecCCCccceeeeecceeeeec
Confidence 679999999998765 59999999988766654433211112223566653
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]}
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class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Hypothetical protein YesU
domain: Hypothetical protein YesU
species: Bacillus subtilis [TaxId: 1423]
Probab=91.40 E-value=0.11 Score=33.26 Aligned_cols=28 Identities=14% Similarity=0.017 Sum_probs=25.3
Q ss_pred CCCCceEEEEEEECCeEEEEECCcccee
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIES 54 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~ 54 (88)
-.++||++-|.|+|++++.++|=+++..
T Consensus 156 ~~geWn~~~I~v~G~~i~~~lNG~~v~d 183 (223)
T d1oq1a_ 156 DADSPYRMKLIKDKGYVHFSINGLPILE 183 (223)
T ss_dssp GCCSCEEEEEEEETTEEEEEETTEEEEE
T ss_pred cCCCcEEEEEEEECCEEEEEECCEEEEE
Confidence 4699999999999999999999988843
>d2ah2a1 b.29.1.15 (A:409-633) Trypanosoma sialidase, C-terminal domain {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]}
Back Show information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Trypanosoma sialidase, C-terminal domain
domain: Trypanosoma sialidase, C-terminal domain
species: Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]
Probab=80.51 E-value=1.4 Score=29.82 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=37.1
Q ss_pred CCCCCCceEEEEEEECCeEEEEECCccce-eEEEecCCCceeeecCcEEEEeecCCC
Q psy5411 25 PAPTGKYFKFALKVTLDGVTAFVNCEEIE-STRVVRNPQELLFDSASTLYLGQAGPI 80 (88)
Q Consensus 25 ~~~d~~Whr~alsV~~~~VtL~~DC~~~~-~~~~~R~p~~l~~~~~~~l~iGqaG~~ 80 (88)
..-.++.|++||-.++++.+.|+|=+.+. .....-.. .....=+-+|||-.|..
T Consensus 130 ~we~~k~yqVal~l~~~~gsvYVDG~~v~~~~~~~~~~--~~~~~IShFyiGg~g~~ 184 (225)
T d2ah2a1 130 SWEMGKRYHVVLTMANKIGSVYIDGEPLEGSGQTVVPD--ERTPDISHFYVGGYKRS 184 (225)
T ss_dssp CCCTTCEEEEEEEEETTEEEEEETTEECTTCCEECCCS--SSCCCCCEEEESSCCCT
T ss_pred cccCCcEEEEEEEEeCCcEEEEECCEEecCCcccccCC--CCCCccceEEEeCCCCC
Confidence 44678889999999999999999998772 22211111 11223568999887755
