Psyllid ID: psy5448

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
MSDIPTESCVVQCVLEIKVMDTPTGGGRDSRFSMGYNMSILNNETSPEIYSSSVHSRASTSITSGLSRTLINNNNNNNCSSNVQRGLKRTSDMCYEHDGRSSMTNLTGDCGSDIVDEGYSPSTQKGSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKALIQTCLNSPDPCPSGAGDQRMSATGFEETELSYNIGDDEQKVRQLVYGGSPHLPSQPQSHPHQNYHPAGSPHQHHLYQSSPIIPCSSPGPMIGSYPSPIPHSAYPHMSHSHPQR
cccccccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccEEEEEccccccccccEEEEEcccccEEEEEEcccccEEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccEEEEEEEEEEEEccccccccccccccccccccccccccccHccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcccccHHHHcHHHHHHHHHHHccccccccccccccccccccccccccHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
msdiptesCVVQCVLEIKvmdtptgggrdsrfsmgynmsilnnetspeiysssvhsrastsitsGLSRTlinnnnnnncssnvQRGLkrtsdmcyehdgrssmtnltgdcgsdivdegyspstqkgsppsngkktkgrVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKALIQTClnspdpcpsgagdqrmsatgfeetelsynigddeqKVRQLvyggsphlpsqpqshphqnyhpagsphqhhlyqsspiipcsspgpmigsypspiphsayphmshshpqr
msdiptesCVVQCVLEIKvmdtptgggrdsrFSMGYNMSILNNETSPEIYSSSVHSRASTSITSGLSRtlinnnnnnncssnvQRGLKRTSDMCYEHDGRSSMTNLTGDCGSDIVDEGYspstqkgsppsngkktkgrvkikmeyidnklrryttfskrktgiMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKALIQTCLNSPDPCPSGAGDQRMSATGFEETELSYNIGDDEQKVRQLVYGGSPHLPSQPQSHPHQNYHPAGSPHQHHLYQSSPIIPCSSPGPMIGSYPSPIPHSAYPHMSHSHPQR
MSDIPTESCVVQCVLEIKVMDTPTGGGRDSRFSMGYNMSILNNETSPEIYSSSVHSRASTSITSGLSRTLInnnnnnnCSSNVQRGLKRTSDMCYEHDGRSSMTNLTGDCGSDIVDEGYSPSTQKGSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKALIQTCLNSPDPCPSGAGDQRMSATGFEETELSYNIGDDEQKVRQLVYGGsphlpsqpqshphqNYHPAGSPHQHHLYQsspiipcsspgpmigsYPSPIPHSAYPHMSHSHPQR
*******SCVVQCVLEIKVMDT*********************************************************************************************************************KIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKALIQTCL************************************************************************************************************
******ESCVVQCVLEIKVM****************************************************************************************************************************YIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKALI****************************************************************************************************************
MSDIPTESCVVQCVLEIKVMDTPTGGGRDSRFSMGYNMSILNNETSPE**************TSGLSRTLINNNNNNNCSSNVQRGLKRTSDMCYEHDGRSSMTNLTGDCGSDIVDEGY******************RVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKALIQTCLNSPDPCPSGAGDQRMSATGFEETELSYNIGDDEQKVRQLVYGGSPH***********************LYQSSPIIPCSSPGPMIGSYPSPIPHSAY**********
****PTESCVVQCVLEIKVMDTPTGGGRDSRFSMGYNMSILNNETSPEIYSSSVHSRASTSITSGLSRTLINN*****************************************************************VKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKALIQTCLNS********************************************LPSQPQSHPHQNYHPAGSPHQHHLYQSSPIIPCSSPGPMIGSYPSPIPHS************
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MSDIPTESCVVQCVLEIKVMDTPTGGGRDSRFSMGYNMSILNNETSPEIYSSSVHSRASTSITSGLSRTLINNNNNNNCSSNVQRGLKRTSDMCYEHDGRSSMTNLTGDCGSDIVDEGYSPSTQKGSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKALIQTCLNSPDPCPSGAGDQRMSATGFEETELSYNIGDDEQKVRQLVYGGSPHLPSQPQSHPHQNYHPAGSPHQHHLYQSSPIIPCSSPGPMIGSYPSPIPHSAYPHMSHSHPQR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query322 2.2.26 [Sep-21-2011]
Q24535449 Serum response factor hom no N/A 0.509 0.365 0.761 5e-67
P11831 508 Serum response factor OS= yes N/A 0.487 0.309 0.664 8e-53
Q90718 375 Serum response factor (Fr yes N/A 0.369 0.317 0.818 2e-52
P23790 448 Serum response factor OS= N/A N/A 0.465 0.334 0.652 6e-52
Q9JM73 504 Serum response factor OS= yes N/A 0.360 0.230 0.822 3e-51
Q54TY7 418 Serum response factor hom yes N/A 0.316 0.244 0.699 7e-33
Q54RY6 467 Serum response factor hom no N/A 0.291 0.201 0.691 2e-31
P11746286 Pheromone receptor transc yes N/A 0.288 0.325 0.606 6e-28
Q5AFP3262 Transcription factor of m N/A N/A 0.298 0.366 0.626 1e-27
P07249177 Arginine metabolism regul no N/A 0.276 0.502 0.516 1e-20
>sp|Q24535|SRF_DROME Serum response factor homolog OS=Drosophila melanogaster GN=bs PE=1 SV=2 Back     alignment and function desciption
 Score =  254 bits (650), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 131/172 (76%), Positives = 138/172 (80%), Gaps = 8/172 (4%)

Query: 85  RGLKRTSDMCYEHDGRSS-------MTNLTGDCGSDIVDEGYSPSTQKGSPPSNGKKTKG 137
           RGLKR+   CYE   RSS       + N+      D VD  Y+P   K SPP+NGKKTKG
Sbjct: 108 RGLKRSGSDCYEDHHRSSGGLTLQGLDNVASGAVDDSVDN-YNPLPNKKSPPANGKKTKG 166

Query: 138 RVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKL 197
           RVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKL
Sbjct: 167 RVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKL 226

Query: 198 QPMITSEAGKALIQTCLNSPDPCPSGAGDQRMSATGFEETELSYNIGDDEQK 249
           QPMITSEAGK LIQTCLNSPDP   G GDQRMSATGFEETELSYNI D++ K
Sbjct: 227 QPMITSEAGKQLIQTCLNSPDPPSVGGGDQRMSATGFEETELSYNIADEDSK 278
Required for the formation of intervein tissue of the wing. Acts in a dosage-dependent manner to suppress wing vein formation and promote development of intervein cells. Might play a role in the proper formation and maintenance of the trachea.
Drosophila melanogaster (taxid: 7227)
>sp|P11831|SRF_HUMAN Serum response factor OS=Homo sapiens GN=SRF PE=1 SV=1 Back     alignment and function description
>sp|Q90718|SRF_CHICK Serum response factor (Fragment) OS=Gallus gallus GN=SRF PE=2 SV=1 Back     alignment and function description
>sp|P23790|SRF_XENLA Serum response factor OS=Xenopus laevis GN=srf PE=2 SV=1 Back     alignment and function description
>sp|Q9JM73|SRF_MOUSE Serum response factor OS=Mus musculus GN=Srf PE=1 SV=1 Back     alignment and function description
>sp|Q54TY7|SRFA_DICDI Serum response factor homolog A OS=Dictyostelium discoideum GN=srfA PE=1 SV=1 Back     alignment and function description
>sp|Q54RY6|SRFB_DICDI Serum response factor homolog B OS=Dictyostelium discoideum GN=srfB PE=3 SV=1 Back     alignment and function description
>sp|P11746|MCM1_YEAST Pheromone receptor transcription factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCM1 PE=1 SV=2 Back     alignment and function description
>sp|Q5AFP3|MCM1_CANAL Transcription factor of morphogenesis MCM1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MCM1 PE=1 SV=1 Back     alignment and function description
>sp|P07249|ARGR1_YEAST Arginine metabolism regulation protein I OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARG80 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query322
242021630352 Pheromone receptor transcription factor, 0.975 0.892 0.601 1e-101
225543467353 serum response factor [Nasonia vitripenn 0.906 0.827 0.572 1e-87
328784471 591 PREDICTED: hypothetical protein LOC72432 0.903 0.492 0.561 1e-86
380029571 586 PREDICTED: uncharacterized protein LOC10 0.919 0.505 0.559 4e-86
340721073 595 PREDICTED: serum response factor homolog 0.919 0.497 0.554 2e-85
270002590352 hypothetical protein TcasGA2_TC004911 [T 0.875 0.801 0.576 2e-76
225543470299 serum response factor [Tribolium castane 0.829 0.892 0.591 4e-76
224459194291 serum response factor [Tribolium castane 0.804 0.890 0.602 6e-76
340721075378 PREDICTED: serum response factor homolog 0.711 0.605 0.639 1e-72
6521960317 Serum Response Factor [Artemia francisca 0.841 0.854 0.561 2e-70
>gi|242021630|ref|XP_002431247.1| Pheromone receptor transcription factor, putative [Pediculus humanus corporis] gi|212516501|gb|EEB18509.1| Pheromone receptor transcription factor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/349 (60%), Positives = 252/349 (72%), Gaps = 35/349 (10%)

Query: 1   MSDIPTESCVVQCVLEIKVMDTPTGGGRDSRFSMGYNMSILNNETSPEIYSSSVHSRAST 60
           ++ +   +CV +   E  +     GGGRD+RF++GYNMS+L+ E+SP++YS   H RAS+
Sbjct: 12  LAGVAIRACVDR---EYMLAMEAQGGGRDTRFNLGYNMSMLSGESSPDMYSG--HGRASS 66

Query: 61  SITSGLSRTLINNNNNNNCSSNVQRGLKRTS-DMCYEHD--GRSSMTN----LTGDCGSD 113
           S+ + ++R   N+    +C+  + RG+KRTS D+C++ +  G   MT+    +  D  S+
Sbjct: 67  SLNTAIAR---NSLLPTSCNVGIPRGIKRTSSDVCFDQEVTGGRPMTSQPLSINTDISSE 123

Query: 114 IVDEGYSPSTQ-KGSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELST 172
           +VD+GY+   Q K +PP NGKKTKGRVKIKMEYIDNKLRRYTTF KRKTGIMKKAYELST
Sbjct: 124 LVDDGYTQVQQSKKTPPPNGKKTKGRVKIKMEYIDNKLRRYTTFFKRKTGIMKKAYELST 183

Query: 173 LTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKALIQTCLNSPDPCPSGA-GDQRMSA 231
           LTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKALIQTCLNSPDP PS   GDQRMSA
Sbjct: 184 LTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKALIQTCLNSPDPAPSSVGGDQRMSA 243

Query: 232 TGFEETELSYNIGDDEQKVRQLVYGGSP----HLPSQPQSH----PHQNYHPAGSPHQHH 283
           TGFEETEL+YNI D+EQKVRQLVYGGSP    H+  Q   H    PH  +H  G PH H 
Sbjct: 244 TGFEETELTYNISDEEQKVRQLVYGGSPHSHQHMGQQHLQHYPGSPHHQHHMMGPPHPHA 303

Query: 284 LYQSSPIIPCSSPGPMIG------SYPSPIPHSAY----PHMSHSHPQR 322
               S +IPCSSP PM+G      S PSP+PHS Y    PHMSHSHPQR
Sbjct: 304 QSPPSHLIPCSSPSPMMGTGYGQPSCPSPLPHSGYPPPHPHMSHSHPQR 352

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|225543467|ref|NP_001139382.1| serum response factor [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|328784471|ref|XP_001120126.2| PREDICTED: hypothetical protein LOC724322 [Apis mellifera] Back     alignment and taxonomy information
>gi|380029571|ref|XP_003698442.1| PREDICTED: uncharacterized protein LOC100871245 [Apis florea] Back     alignment and taxonomy information
>gi|340721073|ref|XP_003398950.1| PREDICTED: serum response factor homolog isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|270002590|gb|EEZ99037.1| hypothetical protein TcasGA2_TC004911 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|225543470|ref|NP_001139383.1| serum response factor [Tribolium castaneum] Back     alignment and taxonomy information
>gi|224459194|gb|ACN43332.1| serum response factor [Tribolium castaneum] Back     alignment and taxonomy information
>gi|340721075|ref|XP_003398951.1| PREDICTED: serum response factor homolog isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|6521960|emb|CAB62047.1| Serum Response Factor [Artemia franciscana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query322
FB|FBgn0004101449 bs "blistered" [Drosophila mel 0.512 0.367 0.763 2e-65
UNIPROTKB|P11831 508 SRF "Serum response factor" [H 0.487 0.309 0.670 6.7e-49
UNIPROTKB|E1BJP4 509 SRF "Uncharacterized protein" 0.403 0.255 0.772 1.1e-48
UNIPROTKB|F1PH12 508 SRF "Uncharacterized protein" 0.403 0.255 0.772 1.1e-48
UNIPROTKB|F1RRM9 512 SRF "Uncharacterized protein" 0.403 0.253 0.772 1.1e-48
ZFIN|ZDB-GENE-040426-1294314 srfl "serum response factor li 0.372 0.382 0.821 2.3e-48
ZFIN|ZDB-GENE-990714-29 539 srf "serum response factor" [D 0.472 0.282 0.678 2.9e-48
RGD|1559787 504 Srf "serum response factor (c- 0.403 0.257 0.765 3.7e-48
MGI|MGI:106658 504 Srf "serum response factor" [M 0.403 0.257 0.765 4.7e-48
UNIPROTKB|Q90718 375 SRF "Serum response factor" [G 0.369 0.317 0.818 7.7e-48
FB|FBgn0004101 bs "blistered" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 639 (230.0 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
 Identities = 132/173 (76%), Positives = 139/173 (80%)

Query:    84 QRGLKRTSDMCYEHDGRSS-------MTNLTGDCGSDIVDEGYSPSTQKGSPPSNGKKTK 136
             QRGLKR+   CYE   RSS       + N+      D VD  Y+P   K SPP+NGKKTK
Sbjct:   107 QRGLKRSGSDCYEDHHRSSGGLTLQGLDNVASGAVDDSVDN-YNPLPNKKSPPANGKKTK 165

Query:   137 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRK 196
             GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRK
Sbjct:   166 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRK 225

Query:   197 LQPMITSEAGKALIQTCLNSPDPCPSGAGDQRMSATGFEETELSYNIGDDEQK 249
             LQPMITSEAGK LIQTCLNSPDP   G GDQRMSATGFEETELSYNI D++ K
Sbjct:   226 LQPMITSEAGKQLIQTCLNSPDPPSVGGGDQRMSATGFEETELSYNIADEDSK 278
GO:0005634 "nucleus" evidence=NAS;IDA
GO:0007424 "open tracheal system development" evidence=IEP;NAS;TAS
GO:0007430 "terminal branching, open tracheal system" evidence=NAS;IMP;TAS
GO:0007475 "apposition of dorsal and ventral imaginal disc-derived wing surfaces" evidence=IMP
GO:0035220 "wing disc development" evidence=IMP
GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=NAS;IMP;TAS
GO:0002168 "instar larval development" evidence=IMP
GO:0035209 "pupal development" evidence=IMP
GO:0030154 "cell differentiation" evidence=IMP
GO:0045165 "cell fate commitment" evidence=TAS
GO:0035154 "terminal cell fate specification, open tracheal system" evidence=TAS
GO:0046983 "protein dimerization activity" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0033613 "activating transcription factor binding" evidence=IPI
GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP
GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IPI
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA
GO:0030431 "sleep" evidence=IMP
UNIPROTKB|P11831 SRF "Serum response factor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BJP4 SRF "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PH12 SRF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RRM9 SRF "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1294 srfl "serum response factor like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990714-29 srf "serum response factor" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1559787 Srf "serum response factor (c-fos serum response element-binding transcription factor)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:106658 Srf "serum response factor" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q90718 SRF "Serum response factor" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P11831SRF_HUMANNo assigned EC number0.66460.48750.3090yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query322
cd0026683 cd00266, MADS_SRF_like, SRF-like/Type I subfamily 7e-29
smart0043259 smart00432, MADS, MADS domain 6e-26
cd0012059 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and 1e-24
pfam0031951 pfam00319, SRF-TF, SRF-type transcription factor ( 6e-20
cd0026577 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa 4e-18
COG5068 412 COG5068, ARG80, Regulator of arginine metabolism a 3e-16
>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators Back     alignment and domain information 
 Score =  105 bits (265), Expect = 7e-29
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)

Query: 137 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRK 196
           GR KIK++ I+NK +R  TFSKR+ G+ KKA ELSTL G +V ++V S +G +Y F    
Sbjct: 1   GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 197 -LQPMITSEAGKALIQTCLNSPD 218
            ++ +I+     + ++    + D
Sbjct: 61  EVEGVISRFEVLSALERKKKAVD 83

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83
>gnl|CDD|197721 smart00432, MADS, MADS domain Back     alignment and domain information
>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators Back     alignment and domain information
>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain) Back     alignment and domain information
>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators Back     alignment and domain information
>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 322
KOG0015|consensus338 99.96
KOG0014|consensus195 99.93
cd0026577 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li 99.93
cd0026683 MADS_SRF_like SRF-like/Type I subfamily of MADS (M 99.91
smart0043259 MADS MADS domain. 99.9
cd0012059 MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru 99.89
PF0031951 SRF-TF: SRF-type transcription factor (DNA-binding 99.83
COG5068 412 ARG80 Regulator of arginine metabolism and related 99.68
>KOG0015|consensus Back     alignment and domain information 
Probab=99.96  E-value=9.3e-30  Score=242.01  Aligned_cols=107  Identities=77%  Similarity=1.122  Sum_probs=101.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCcccceeEEecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccC
Q psy5448         115 VDEGYSPSTQKGSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFAT  194 (322)
Q Consensus       115 ~~~~~~~~~~~~~~~~~gk~~mGRrKI~Ik~Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsS  194 (322)
                      .-..|++.+.....+-+||++.||+||+|+||+||.+|.+||+|||.||||||+||++|+|++|.|+|.|++|.+|+|++
T Consensus        41 ~~~~~~p~~~~~~~~~~~k~~~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaT  120 (338)
T KOG0015|consen   41 SVSTYTPTPNSGSQKDGGKKTTGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT  120 (338)
T ss_pred             cccccCCCCCcccccCCCccccceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecc
Confidence            33577888788888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhhhhhhhhhHhhhcCCCCCCC
Q psy5448         195 RKLQPMITSEAGKALIQTCLNSPDPCP  221 (322)
Q Consensus       195 pslq~VIer~~~K~Liqr~lnspepss  221 (322)
                      +++++||...++++||+.|||+++...
T Consensus       121 pKLep~i~s~~Gk~lIq~cLn~pd~~~  147 (338)
T KOG0015|consen  121 PKLEPMITSDEGKALIQACLNAPDTPP  147 (338)
T ss_pred             ccccccccchhhHHHHHHHhcCCCCCC
Confidence            999999999999999999999999864

>KOG0014|consensus Back     alignment and domain information
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators Back     alignment and domain information
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators Back     alignment and domain information
>smart00432 MADS MADS domain Back     alignment and domain information
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators Back     alignment and domain information
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation Back     alignment and domain information
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query322
1k6o_B103 Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn 5e-44
1srs_A92 Serum Response Factor (Srf) Core Complexed With Spe 7e-44
1mnm_A100 Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE 6e-28
3mu6_A71 Inhibiting The Binding Of Class Iia Histone Deacety 4e-07
1c7u_A85 Complex Of The Dna Binding Core Domain Of The Trans 5e-07
1egw_A77 Crystal Structure Of Mef2a Core Bound To Dna Length 6e-07
3kov_A90 Structure Of Mef2a Bound To Dna Reveals A Completel 7e-07
1tqe_P93 Mechanism Of Recruitment Of Class Ii Histone Deacet 9e-07
1n6j_A93 Structural Basis Of Sequence-Specific Recruitment O 1e-06
>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103 Back     alignment and structure 
Iteration: 1

 Score =  174 bits (441), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 89/105 (84%), Positives = 93/105 (88%), Gaps = 4/105 (3%)
Query: 126 GSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASE 185
           G+ P  GKKT+GRVKIKME+IDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQV+LLVASE
Sbjct: 1   GAKP--GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASE 58
Query: 186 TGHVYTFATRKLQPMITSEAGKALIQTCLNSPDPCPSG--AGDQR 228
           TGHVYTFATRKLQPMITSE GKALIQTCLNSPD  P      DQR
Sbjct: 59  TGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDPTTDQR 103
>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92 Back     alignment and structure
>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100 Back     alignment and structure
>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71 Back     alignment and structure
>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85 Back     alignment and structure
>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77 Back     alignment and structure
>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90 Back     alignment and structure
>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93 Back     alignment and structure
>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query322
1hbx_A92 SRF, serum response factor; gene regulation, trans 7e-39
1k6o_B103 SRF, serum response factor; protein/DNA complex, t 4e-38
1mnm_A100 Protein (MCM1 transcriptional regulator); transcri 7e-37
3p57_A90 Myocyte-specific enhancer factor 2A; protein-DNA c 3e-17
1egw_A77 MADS box transcription enhancer factor 2, polypept 4e-17
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92 Back     alignment and structure
 Score =  131 bits (332), Expect = 7e-39
 Identities = 84/92 (91%), Positives = 87/92 (94%)

Query: 127 SPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASET 186
           S    GKKT+GRVKIKME+IDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQV+LLVASET
Sbjct: 1   SGAKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASET 60

Query: 187 GHVYTFATRKLQPMITSEAGKALIQTCLNSPD 218
           GHVYTFATRKLQPMITSE GKALIQTCLNSPD
Sbjct: 61  GHVYTFATRKLQPMITSETGKALIQTCLNSPD 92
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103 Back     alignment and structure
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100 Back     alignment and structure
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90 Back     alignment and structure
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query322
1hbx_A92 SRF, serum response factor; gene regulation, trans 100.0
1mnm_A100 Protein (MCM1 transcriptional regulator); transcri 99.97
1k6o_B103 SRF, serum response factor; protein/DNA complex, t 99.97
1egw_A77 MADS box transcription enhancer factor 2, polypept 99.95
3p57_A90 Myocyte-specific enhancer factor 2A; protein-DNA c 99.94
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Back     alignment and structure
Probab=100.00  E-value=1e-34  Score=234.63  Aligned_cols=89  Identities=93%  Similarity=1.299  Sum_probs=85.5

Q ss_pred             CCCCCCCCcccceeEEecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccCCCchhhhhhhhhhhh
Q psy5448         130 SNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKAL  209 (322)
Q Consensus       130 ~~gk~~mGRrKI~Ik~Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsSpslq~VIer~~~K~L  209 (322)
                      ..||++|||+||+|++|+|+..|++||+|||.||||||+||||||||+|||||||++|++|+|++++++++|+++.++.|
T Consensus         4 ~~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~Gk~L   83 (92)
T 1hbx_A            4 KPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKAL   83 (92)
T ss_dssp             --CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHHHHH
T ss_pred             CcCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcccHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCCCC
Q psy5448         210 IQTCLNSPD  218 (322)
Q Consensus       210 iqr~lnspe  218 (322)
                      |++|++.|+
T Consensus        84 i~~cl~~p~   92 (92)
T 1hbx_A           84 IQTCLNSPD   92 (92)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHhcCCC
Confidence            999999875
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Back     alignment and structure
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Back     alignment and structure
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Back     alignment and structure
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 322
d1srsa_84 d.88.1.1 (A:) Serum response factor (SRF) core {Hu 5e-32
d1mnma_85 d.88.1.1 (A:) MCM1 transcriptional regulator {Bake 5e-29
d1egwa_71 d.88.1.1 (A:) Myocyte enhancer factor Mef2a core { 7e-21
>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (282), Expect = 5e-32
 Identities = 80/84 (95%), Positives = 83/84 (98%)

Query: 135 TKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFAT 194
           T+GRVKIKME+IDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQV+LLVASETGHVYTFAT
Sbjct: 1   TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 60

Query: 195 RKLQPMITSEAGKALIQTCLNSPD 218
           RKLQPMITSE GKALIQTCLNSPD
Sbjct: 61  RKLQPMITSETGKALIQTCLNSPD 84
>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Back     information, alignment and structure
>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query322
d1srsa_84 Serum response factor (SRF) core {Human (Homo sapi 99.97
d1mnma_85 MCM1 transcriptional regulator {Baker's yeast (Sac 99.96
d1egwa_71 Myocyte enhancer factor Mef2a core {Human (Homo sa 99.95
>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.3e-33  Score=218.31  Aligned_cols=84  Identities=95%  Similarity=1.328  Sum_probs=81.7

Q ss_pred             CCCcccceeEEecccccccchhhhccchhcccccccccccCCcEEEEEEcCCCceeeccCCCchhhhhhhhhhhhHhhhc
Q psy5448         135 TKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKALIQTCL  214 (322)
Q Consensus       135 ~mGRrKI~Ik~Ienk~~R~vTFsKRk~GL~KKA~ELSvLCgaeVALIVfSptGKly~FsSpslq~VIer~~~K~Liqr~l  214 (322)
                      ++||+||+|++|+|+..|++||+|||.||||||+||||||||+|||||||++|++|+|++++++++|+++.++.++++|+
T Consensus         1 ~~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~~~l~~~~l   80 (84)
T d1srsa_           1 TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCL   80 (84)
T ss_dssp             CCCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHHHHHHHHHH
T ss_pred             CCCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHHHHHHHhcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q psy5448         215 NSPD  218 (322)
Q Consensus       215 nspe  218 (322)
                      +.++
T Consensus        81 ~~~D   84 (84)
T d1srsa_          81 NSPD   84 (84)
T ss_dssp             HSCC
T ss_pred             CCCC
Confidence            8764
>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure