Psyllid ID: psy5490

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
Protein Sequence
MPTDSFESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQEESKAAFCRGSESTPTVSSKQAVKTTFPPVSTEPSGKPSDPPNSGKTKEPPNSGDDQSSVVNVATDSTLSHVTSTPSTSAATTTQTTSPPVVSAASQNTSSATQSSTAATQNASPATQSSNVATQNTPVTNLNNAVATLKTAVATLNRHCR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccHHHHHHHHccccEEEEEccccccccccccccccccccHHHHHcccHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccccHHHHccccccccccccccHHHHHHHHHcccHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccccEEEEEHccccccHcHcccccccHHHHHcccccHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mptdsfespltlaacgghvnmptdsfespltlaacggHVDLALLLIERganieevnmptdsfespltlaacggHVDLALLLIERganieevndegytpLMEAAREGHEEMVCVLLQKGakinahteETQETALTLACCGGFLDVADFLLknganielgastplmEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQEESKAafcrgsestptvsskqavkttfppvstepsgkpsdppnsgktkeppnsgddqssvvnvatdstlshvtstpstsaatttqttsppvvsaasqntssatqsstaatqnaspatqssnvatqntpvtnlNNAVATLKTAVATLNRHCR
Flexible Loop (DISEMBL)
mptdsfesPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQEESKAafcrgsestptvsskqavkttfppvstepsgkpsdppnsgktkeppnsgddqsSVVNVATDSTLshvtstpstsaatttqttsppvVSAASQNTSSATQSSTAATQNASPATQSSNVATQNTPVTNLNNAVATLKTAVATLNRHCR
Low Complexity Region (SEG)
MPTDSFESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHteetqetaltlaCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQEESKAAFCRGSESTPTVSSKQAVKTTFPPVSTEPSGKPSDPPNSGKTKEPPNSGDDQSSVVNVATDSTLSHvtstpstsaatttqttsppvvsaasqntssatqsstaatqnaspatqssNVATQNTPVTNLnnavatlktavatlnRHCR
Disordered region (IsUnstruct)
***********LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDIL*********************************************************************************************************************************************AVATLKTAV********
Disordered Region (DISOPRED)
MPTDSFESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQEESKAAFCRGSESTPTVSSKQAVKTTFPPVSTEPSGKPSDPPNSGKTKEPPNSGDDQSSVVNVATDSTLSHVTSTPSTSAATTTQTTSPPVVSAASQNTS*******AATQNASPATQSSNVATQNTPVTNLNNAVATLKTAVA*******
Disordered Region (DISEMBL)
********PLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKK**************************************************************VVNVATD********************************************************ATQNTPVTNLNNAVATLKTAVATLNRHCR
Disordered Region (DISPRO)
***DSFESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQEESKAAFCRGSESTPTVSSKQAVKTTFPPVSTEPSGKPSDPPNSGKTKEPPNSGDDQSSVVNVATDSTLSHVTSTPSTSAATTTQTTSPPVVSAASQNTSSATQSSTAATQNAS*********T*NTPVTNLNNAVATLKTAVATLNRHCR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPTDSFESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQEESKAAFCRGSESTPTVSSKQAVKTTFPPVSTEPSGKPSDPPNSGKTKEPPNSGDDQSSVVNVATDSTLSHVTSTPSTSAATTTQTTSPPVVSAASQNTSSATQSSTAATQNASPATQSSNVATQNTPVTNLNNAVATLKTAVATLNRHCR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	352	2.2.26 [Sep-21-2011]
Q99NH0	2603	Ankyrin repeat domain-con	yes	N/A	0.494	0.066	0.689	9e-68
O75179	2603	Ankyrin repeat domain-con	yes	N/A	0.494	0.066	0.689	9e-68
Q8IWZ3	2542	Ankyrin repeat and KH dom	no	N/A	0.494	0.068	0.689	1e-67
Q9VCA8	4001	Ankyrin repeat and KH dom	yes	N/A	0.494	0.043	0.678	2e-66
Q21920	2620	Ankyrin repeat and KH dom	no	N/A	0.491	0.066	0.369	1e-21
Q60J38	2636	Ankyrin repeat and KH dom	N/A	N/A	0.369	0.049	0.425	4e-21
Q7T163	1672	Kinase D-interacting subs	no	N/A	0.488	0.102	0.350	3e-19
Q9ULJ7	1429	Ankyrin repeat domain-con	no	N/A	0.494	0.121	0.375	1e-18
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	N/A	0.434	0.038	0.375	1e-18
Q5UPA0	326	Putative ankyrin repeat p	N/A	N/A	0.406	0.438	0.337	2e-18

>sp|Q99NH0|ANR17_MOUSE Ankyrin repeat domain-containing protein 17 OS=Mus musculus GN=Ankrd17 PE=1 SV=2

 Score =  257 bits (657), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 131/190 (68%), Positives = 148/190 (77%), Gaps = 16/190 (8%)

Query: 7   ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           ES LTLA   GH+ M              TD   + L  A   GHV++A LL++ GA   
Sbjct: 398 ESALTLACYKGHLEMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGA--- 454

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           +VNMP DSFESPLTLAACGGHV+LA LLIERGA++EEVNDEGYTPLMEAAREGHEEMV +
Sbjct: 455 QVNMPADSFESPLTLAACGGHVELAALLIERGASLEEVNDEGYTPLMEAAREGHEEMVAL 514

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
           LL +GA INA TEETQETALTLACCGGFL+VADFL+K GA+IELG STPLMEAAQEGHLE
Sbjct: 515 LLGQGANINAQTEETQETALTLACCGGFLEVADFLIKAGADIELGCSTPLMEAAQEGHLE 574

Query: 174 LVRYLLDSGA 183
           LV+YLL +GA
Sbjct: 575 LVKYLLAAGA 584

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification.
Mus musculus (taxid: 10090)

>sp|O75179|ANR17_HUMAN Ankyrin repeat domain-containing protein 17 OS=Homo sapiens GN=ANKRD17 PE=1 SV=3

 Score =  257 bits (657), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 131/190 (68%), Positives = 148/190 (77%), Gaps = 16/190 (8%)

Query: 7   ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           ES LTLA   GH+ M              TD   + L  A   GHV++A LL++ GA   
Sbjct: 402 ESALTLACYKGHLEMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGA--- 458

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           +VNMP DSFESPLTLAACGGHV+LA LLIERGA++EEVNDEGYTPLMEAAREGHEEMV +
Sbjct: 459 QVNMPADSFESPLTLAACGGHVELAALLIERGASLEEVNDEGYTPLMEAAREGHEEMVAL 518

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
           LL +GA INA TEETQETALTLACCGGFL+VADFL+K GA+IELG STPLMEAAQEGHLE
Sbjct: 519 LLGQGANINAQTEETQETALTLACCGGFLEVADFLIKAGADIELGCSTPLMEAAQEGHLE 578

Query: 174 LVRYLLDSGA 183
           LV+YLL +GA
Sbjct: 579 LVKYLLAAGA 588

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification (By similarity). Target of enterovirus 71 which is the major etiological agent of HFMD (hand, foot and mouth disease).

Homo sapiens (taxid: 9606)

>sp|Q8IWZ3|ANKH1_HUMAN Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1 PE=1 SV=1

 Score =  257 bits (656), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 131/190 (68%), Positives = 148/190 (77%), Gaps = 16/190 (8%)

Query: 7   ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           ES LTLA   GH++M              TD   + L  A   GHV++A LL++ GA   
Sbjct: 373 ESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGA--- 429

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           +VNMP DSFESPLTLAACGGHV+LA LLIERGAN+EEVNDEGYTPLMEAAREGHEEMV +
Sbjct: 430 QVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVAL 489

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
           LL +GA INA TEETQETALTLACCGGF +VADFL+K GA+IELG STPLMEA+QEGHLE
Sbjct: 490 LLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIELGCSTPLMEASQEGHLE 549

Query: 174 LVRYLLDSGA 183
           LV+YLL SGA
Sbjct: 550 LVKYLLASGA 559

May play a role as a scaffolding protein that may be associated with the abnormal phenotype of leukemia cells. Isoform 2 may possess an antiapoptotic effect and protect cells during normal cell survival through its regulation of caspases.

Homo sapiens (taxid: 9606)

>sp|Q9VCA8|ANKHM_DROME Ankyrin repeat and KH domain-containing protein mask OS=Drosophila melanogaster GN=mask PE=1 SV=2

 Score =  253 bits (645), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/190 (67%), Positives = 147/190 (77%), Gaps = 16/190 (8%)

Query: 7   ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           ES LTLA   GH++M              TD   + L  A+  GHV++A LL++ GA   
Sbjct: 720 ESALTLACYKGHLDMVRFLLQAGADQEHKTDEMHTALMEASMDGHVEVARLLLDSGA--- 776

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           +VNMPTDSFESPLTLAACGGHV+LA LLIERGANIEEVNDEGYTPLMEAAREGHEEMV +
Sbjct: 777 QVNMPTDSFESPLTLAACGGHVELATLLIERGANIEEVNDEGYTPLMEAAREGHEEMVAL 836

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
           LL KGA INA TEETQETALTLACCGGF++VA FL+K GAN+ELGASTPLMEA+QEGH +
Sbjct: 837 LLSKGANINATTEETQETALTLACCGGFMEVAAFLIKEGANLELGASTPLMEASQEGHTD 896

Query: 174 LVRYLLDSGA 183
           LV +LL   A
Sbjct: 897 LVSFLLKKKA 906

Mediator of receptor tyrosine kinase (RTK) signaling, and may act either downstream of MAPK or transduce signaling through a parallel branch of the RTK pathway.

Drosophila melanogaster (taxid: 7227)

>sp|Q21920|ANKHM_CAEEL Ankyrin repeat and KH domain-containing protein R11A8.7 OS=Caenorhabditis elegans GN=R11A8.7 PE=2 SV=3

 Score =  104 bits (259), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/195 (36%), Positives = 105/195 (53%), Gaps = 22/195 (11%)

Query: 8    SPLTLAACGGH-------------VNMPTD-SFESPLTLAACGGHVDLALLLIERGANIE 53
            SPL +AA  GH             +   +D + ++ L+LA  GG  D+  LL+  GAN E
Sbjct: 1270 SPLIIAATAGHSSVVEVLLKNHAAIEAQSDRTKDTALSLACSGGRKDVVELLLAHGANKE 1329

Query: 54   EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDE--GYTPLMEAAREGHEEMV 111
              N+   S  +PL+LA+ GG++++  +L+  G+ I        G +PLM A+  GH E  
Sbjct: 1330 HRNV---SDYTPLSLASSGGYIEIVNMLLTAGSEINSRTGSKLGISPLMLASMNGHREAT 1386

Query: 112  CVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQ 168
             VLL+KG+ INA  E  + TALTLA   G  +V   LL   AN+E  A    TPLME A 
Sbjct: 1387 RVLLEKGSDINAQIETNRNTALTLASFQGRTEVVKLLLAYNANVEHRAKTGLTPLMECAS 1446

Query: 169  EGHLELVRYLLDSGA 183
             G++++   L+ +GA
Sbjct: 1447 GGYVDVGNLLIAAGA 1461

Caenorhabditis elegans (taxid: 6239)

>sp|Q60J38|ANKHM_CAEBR Ankyrin repeat and KH domain-containing protein CBG24701 OS=Caenorhabditis briggsae GN=CBG24701 PE=3 SV=3

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 86/134 (64%), Gaps = 4/134 (2%)

Query: 55   VNMPTDS-FESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
            ++  TDS  E+PL++A   GH ++  LL++ GANIE  + +G+TPL+ AA  GH  +V V
Sbjct: 1266 IDKATDSTLETPLSIACSNGHREVVELLLKEGANIEHRDKKGFTPLIIAATYGHAPIVEV 1325

Query: 114  LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE---LGASTPLMEAAQEG 170
            LL+  A I A ++ T++TAL+LAC  G  DV + LL +GAN E   +   TPL  A+  G
Sbjct: 1326 LLKNHAAIEAQSDRTKDTALSLACTAGRKDVVEMLLAHGANKEHRNVSDYTPLSLASSSG 1385

Query: 171  HLELVRYLLDSGAQ 184
             L++V  LL +G++
Sbjct: 1386 FLDIVNLLLTAGSE 1399

Caenorhabditis briggsae (taxid: 6238)

>sp|Q7T163|KDIS_DANRE Kinase D-interacting substrate of 220 kDa OS=Danio rerio GN=kidins220 PE=2 SV=2

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 100/191 (52%), Gaps = 19/191 (9%)

Query: 8   SPLTLAACGGHVNMPTDSFE-------------SPLTLAACGGHVDLALLLIERGANIEE 54
           S L  AA  GHV +  +  E             + LT A+  G V++A +L+E GAN   
Sbjct: 73  SALISAAKEGHVEVVKELLENSAYIEHRDMGGWTALTWASYKGRVEVATVLLENGANPNT 132

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
                  +  P+  AA  GH ++  LL+E GA +   +  G TPL+ AAR+GH + V  L
Sbjct: 133 TGQQYSVY--PIIWAAGRGHAEIVKLLLEHGAKVNCSDKYGTTPLIWAARKGHYDCVMHL 190

Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGH 171
           L+ GA ++     +  TAL +A  GG+ +V   LLK   N+ +     +T LM AA+EG+
Sbjct: 191 LENGADVDQEGANSM-TALIVAVKGGYTEVVKELLKRNPNVNMTDKDGNTALMIAAKEGY 249

Query: 172 LELVRYLLDSG 182
            E+V+ LLD+G
Sbjct: 250 TEIVQDLLDAG 260

Downstream target for both neurotrophin and ephrin receptors.

Danio rerio (taxid: 7955)

>sp|Q9ULJ7|ANR50_HUMAN Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 7/181 (3%)

Query: 7   ESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPL 66
           +S  TL   G  VN    +  + L  AA  G +D+  LL+ RGA++E   +      +PL
Sbjct: 526 DSIRTLLDNGASVNQCDSNGRTLLANAAYSGSLDVVNLLVSRGADLE---IEDAHGHTPL 582

Query: 67  TLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTE 126
           TLAA  GH  +   LI  GANI   + +G+T L  AA  GH E+V  LL  G K++    
Sbjct: 583 TLAARQGHTKVVNCLIGCGANINHTDQDGWTALRSAAWGGHTEVVSALLYAGVKVDCADA 642

Query: 127 ETQETALTLACCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDSGA 183
           +++ TAL  A  GG  D+   LL++GA +        T L+ AA  GH E+V +LLD GA
Sbjct: 643 DSR-TALRAAAWGGHEDIVLNLLQHGAEVNKADNEGRTALIAAAYMGHREIVEHLLDHGA 701

Query: 184 Q 184
           +
Sbjct: 702 E 702

Homo sapiens (taxid: 9606)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 88/160 (55%), Gaps = 7/160 (4%)

Query: 28  SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
           +PL +AA    + +A  L+  GA   E N+ T    +PL LA+  GH D+  LL+++GAN
Sbjct: 631 TPLHIAAKKNQMQIASTLLNYGA---ETNIVTKQGVTPLHLASQEGHTDMVTLLLDKGAN 687

Query: 88  IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF 147
           I      G T L  AA+E    +  +L + GA  +AHT +   T L +AC  G + + +F
Sbjct: 688 IHMSTKSGLTSLHLAAQEDKVNVADILTKHGADQDAHT-KLGYTPLIVACHYGNVKMVNF 746

Query: 148 LLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQ 184
           LLK GAN+        TPL +AAQ+GH  ++  LL  GA+
Sbjct: 747 LLKQGANVNAKTKNGYTPLHQAAQQGHTHIINVLLQHGAK 786

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q5UPA0|YL025_MIMIV Putative ankyrin repeat protein L25 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L25 PE=4 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 90/157 (57%), Gaps = 14/157 (8%)

Query: 27  ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
           ++PL  A+  GH+++   L+E GA+I        ++   +  A+ GGH+ +   L+++GA
Sbjct: 98  DAPLKWASKNGHLEVVKYLVENGADIH-------AYNELVVYASEGGHLQIVKYLVKKGA 150

Query: 87  NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVAD 146
           +I   +DE    L  A+R GH E+V  L++KGA   A      + AL  AC  G L++  
Sbjct: 151 DIHAEDDE---ALKWASRSGHLEVVKYLVEKGANFRA----ENDYALRWACEKGHLEIVK 203

Query: 147 FLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
           +L++ GA+I       L  A++ GHLE+V+YL+++GA
Sbjct: 204 YLVEKGADIHAEDEYALRWASRSGHLEVVKYLVENGA 240

Acanthamoeba polyphaga (taxid: 5757)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
350419534	3091	PREDICTED: hypothetical protein LOC10074	0.494	0.056	0.721	1e-70
328790111	3136	PREDICTED: hypothetical protein LOC40998	0.494	0.055	0.721	1e-70
328698338	2652	PREDICTED: hypothetical protein LOC10016	0.494	0.065	0.715	2e-70
312385378	4867	hypothetical protein AND_00832 [Anophele	0.494	0.035	0.7	2e-70
332022374	3049	Ankyrin repeat and KH domain-containing	0.494	0.057	0.715	3e-70
307186886	2898	Ankyrin repeat domain-containing protein	0.494	0.060	0.710	3e-70
307212336	2982	Ankyrin repeat domain-containing protein	0.488	0.057	0.712	2e-69
242019742	2803	multiple ankyrin repeats single kh domai	0.485	0.061	0.716	3e-69
347970044	4403	AGAP003519-PA [Anopheles gambiae str. PE	0.494	0.039	0.689	8e-69
427796951	2096	Putative rtk signaling protein mask/unc-	0.494	0.083	0.7	1e-68

>gi|350419534|ref|XP_003492217.1| PREDICTED: hypothetical protein LOC100740063 [Bombus impatiens]

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 137/190 (72%), Positives = 152/190 (80%), Gaps = 16/190 (8%)

Query: 7   ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           ES LTLA   GH+ M              TD   + L  A+  GHV++A LL++ GA   
Sbjct: 334 ESALTLACYKGHLEMVRFLLEAGADQEHKTDEMHTALMEASMDGHVEVARLLLDSGA--- 390

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           +VNMPTDSFESPLTLAACGGHVDLA+LLIERGANIEEVNDEGYTPLMEAAREGHEEMV +
Sbjct: 391 QVNMPTDSFESPLTLAACGGHVDLAMLLIERGANIEEVNDEGYTPLMEAAREGHEEMVAL 450

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
           LL +GA INA TEETQETALTLACCGGFL+VADFL+K GA+IELGASTPLMEAAQEGHLE
Sbjct: 451 LLSQGANINAQTEETQETALTLACCGGFLEVADFLIKAGADIELGASTPLMEAAQEGHLE 510

Query: 174 LVRYLLDSGA 183
           LVRYLL+S A
Sbjct: 511 LVRYLLESAA 520

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790111|ref|XP_393472.4| PREDICTED: hypothetical protein LOC409983 [Apis mellifera]

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 137/190 (72%), Positives = 152/190 (80%), Gaps = 16/190 (8%)

Query: 7   ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           ES LTLA   GH+ M              TD   + L  A+  GHV++A LL++ GA   
Sbjct: 334 ESALTLACYKGHLEMVRFLLEAGADQEHKTDEMHTALMEASMDGHVEVARLLLDSGA--- 390

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           +VNMPTDSFESPLTLAACGGHVDLA+LLIERGANIEEVNDEGYTPLMEAAREGHEEMV +
Sbjct: 391 QVNMPTDSFESPLTLAACGGHVDLAMLLIERGANIEEVNDEGYTPLMEAAREGHEEMVAL 450

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
           LL +GA INA TEETQETALTLACCGGFL+VADFL+K GA+IELGASTPLMEAAQEGHLE
Sbjct: 451 LLSQGANINAQTEETQETALTLACCGGFLEVADFLIKAGADIELGASTPLMEAAQEGHLE 510

Query: 174 LVRYLLDSGA 183
           LVRYLL+S A
Sbjct: 511 LVRYLLESAA 520

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328698338|ref|XP_001946819.2| PREDICTED: hypothetical protein LOC100167340 [Acyrthosiphon pisum]

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 136/190 (71%), Positives = 152/190 (80%), Gaps = 16/190 (8%)

Query: 7   ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           ES LTLA   GH+ M              TD   + L  A+  GHV++A LL++ GA   
Sbjct: 356 ESALTLACYKGHLEMVRFLLAAGADQEHKTDEMHTALMEASMDGHVEVARLLLDSGA--- 412

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           +VNMPTDSFESPLTLAACGGHV+LALLLI+RGANIEEVNDEGYTPLMEAAREGHE+MV V
Sbjct: 413 QVNMPTDSFESPLTLAACGGHVELALLLIDRGANIEEVNDEGYTPLMEAAREGHEDMVSV 472

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
           LL KGA INA TEETQETALTLACCGGFLDVADFL+KNGA +ELGASTPLMEAAQEGH++
Sbjct: 473 LLSKGANINAQTEETQETALTLACCGGFLDVADFLIKNGAILELGASTPLMEAAQEGHID 532

Query: 174 LVRYLLDSGA 183
           LVRYLL+ GA
Sbjct: 533 LVRYLLECGA 542

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385378|gb|EFR29898.1| hypothetical protein AND_00832 [Anopheles darlingi]

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 133/190 (70%), Positives = 155/190 (81%), Gaps = 16/190 (8%)

Query: 7   ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           ES LTLA   GH++M              TD   + L  A+  GHV++A LL++ GA   
Sbjct: 726 ESALTLACYKGHLDMVRYLLEAGADQEHKTDEMHTALMEASMDGHVEVARLLLDSGA--- 782

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           +VNMPTDSFESPLTLAACGGHVDLA+LLI+RGANIEEVNDEGYTPLMEAAREGHEEMV +
Sbjct: 783 QVNMPTDSFESPLTLAACGGHVDLAMLLIDRGANIEEVNDEGYTPLMEAAREGHEEMVAL 842

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
           LLQ+ A+INA TEETQETALTLACCGGF++VAD+L+KNGA+IELGASTPLMEAAQEGH+E
Sbjct: 843 LLQQNAQINAQTEETQETALTLACCGGFIEVADYLIKNGADIELGASTPLMEAAQEGHIE 902

Query: 174 LVRYLLDSGA 183
           LVR+LL +GA
Sbjct: 903 LVRFLLQNGA 912

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022374|gb|EGI62686.1| Ankyrin repeat and KH domain-containing protein 1 [Acromyrmex echinatior]

 Score =  271 bits (694), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 136/190 (71%), Positives = 152/190 (80%), Gaps = 16/190 (8%)

Query: 7   ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           ES LTLA   GH+ M              TD   + L  A+  GHV++A LL++ GA   
Sbjct: 349 ESALTLACYKGHLEMVRFLLEAGADQEHKTDEMHTALMEASMDGHVEVARLLLDSGA--- 405

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           +VNMPTDSFESPLTLAACGGHVDLA+LLIERGANIEEVNDEGYTPLMEAAREGHEEMV +
Sbjct: 406 QVNMPTDSFESPLTLAACGGHVDLAMLLIERGANIEEVNDEGYTPLMEAAREGHEEMVAL 465

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
           LL +GA INA TEETQETALTLACCGGFL+VADFL+K GA+IELGASTPLMEAAQEGHL+
Sbjct: 466 LLSQGANINAQTEETQETALTLACCGGFLEVADFLIKAGADIELGASTPLMEAAQEGHLD 525

Query: 174 LVRYLLDSGA 183
           LVRYLL+S A
Sbjct: 526 LVRYLLESAA 535

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186886|gb|EFN72287.1| Ankyrin repeat domain-containing protein 17 [Camponotus floridanus]

 Score =  271 bits (694), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 135/190 (71%), Positives = 152/190 (80%), Gaps = 16/190 (8%)

Query: 7   ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           ES LTLA   GH+ M              TD   + L  A+  GHV++A LL++ GA   
Sbjct: 342 ESALTLACYKGHLEMVRFLLEAGADQEHKTDEMHTALMEASMDGHVEVARLLLDSGA--- 398

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           +VNMPTDSFESPLTLAACGGHVDLA+LLIERGANIEEVNDEGYTPLMEAAREGHEEMV +
Sbjct: 399 QVNMPTDSFESPLTLAACGGHVDLAMLLIERGANIEEVNDEGYTPLMEAAREGHEEMVAL 458

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
           LL +GA INA TEETQETALTLACCGGFL+VADFL+K GA+IELGASTPLMEAAQEGH++
Sbjct: 459 LLSQGANINAQTEETQETALTLACCGGFLEVADFLIKAGADIELGASTPLMEAAQEGHID 518

Query: 174 LVRYLLDSGA 183
           LVRYLL+S A
Sbjct: 519 LVRYLLESAA 528

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212336|gb|EFN88140.1| Ankyrin repeat domain-containing protein 17 [Harpegnathos saltator]

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 134/188 (71%), Positives = 151/188 (80%), Gaps = 16/188 (8%)

Query: 7   ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           ES LTLA   GH+ M              TD   + L  A+  GHV++A LL++ GA   
Sbjct: 341 ESALTLACYKGHLEMVRFLLEAGADQEHKTDEMHTALMEASMDGHVEVARLLLDSGA--- 397

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           +VNMPTDSFESPLTLAACGGHVDLA+LLIERGANIEEVNDEGYTPLMEAAREGHEEMV +
Sbjct: 398 QVNMPTDSFESPLTLAACGGHVDLAMLLIERGANIEEVNDEGYTPLMEAAREGHEEMVAL 457

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
           LL +GA INA TEETQETALTLACCGGFL+VADFL+K GA++ELGASTPLMEAAQEGHL+
Sbjct: 458 LLSQGANINAQTEETQETALTLACCGGFLEVADFLIKAGADVELGASTPLMEAAQEGHLD 517

Query: 174 LVRYLLDS 181
           LVRYLL+S
Sbjct: 518 LVRYLLES 525

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019742|ref|XP_002430318.1| multiple ankyrin repeats single kh domain protein, putative [Pediculus humanus corporis] gi|212515433|gb|EEB17580.1| multiple ankyrin repeats single kh domain protein, putative [Pediculus humanus corporis]

 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 134/187 (71%), Positives = 150/187 (80%), Gaps = 16/187 (8%)

Query: 7   ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           ES LTLA   GH++M              TD   + L  A+  GHV++A LL++ GA   
Sbjct: 337 ESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALMEASMDGHVEVARLLLDSGA--- 393

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           +VNMPTDSFESPLTLAACGGH +LALLLIERGANIEEVNDEGYTPLMEAAREGHEEMV +
Sbjct: 394 QVNMPTDSFESPLTLAACGGHTELALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVAL 453

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
           LL +GA INA TEETQETALTLACCGGFL+VADFLLK GA++ELGASTPLMEAAQEGHLE
Sbjct: 454 LLSQGANINAQTEETQETALTLACCGGFLEVADFLLKAGADLELGASTPLMEAAQEGHLE 513

Query: 174 LVRYLLD 180
           LVRYLL+
Sbjct: 514 LVRYLLE 520

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347970044|ref|XP_562353.4| AGAP003519-PA [Anopheles gambiae str. PEST] gi|333468757|gb|EAL40577.4| AGAP003519-PA [Anopheles gambiae str. PEST]

 Score =  266 bits (681), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 131/190 (68%), Positives = 154/190 (81%), Gaps = 16/190 (8%)

Query: 7   ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           ES LTLA   GH++M              TD   + L  A+  GHV++A LL++ GA   
Sbjct: 308 ESALTLACYKGHLDMVRYLLEAGADQEHKTDEMHTALMEASMDGHVEVARLLLDSGA--- 364

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           +VNMPTDSFESPLTLAACGGHVDLA+LLI+RGANIEEVNDEGYTPLMEAAREGHEEMV +
Sbjct: 365 QVNMPTDSFESPLTLAACGGHVDLAMLLIDRGANIEEVNDEGYTPLMEAAREGHEEMVAL 424

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
           LLQ+ A+INA TEETQETALTLACCGGF++VA++L+KNGA+IELGASTPLMEAAQEGH++
Sbjct: 425 LLQQNAQINAQTEETQETALTLACCGGFIEVAEYLIKNGADIELGASTPLMEAAQEGHID 484

Query: 174 LVRYLLDSGA 183
           LVR+LL  GA
Sbjct: 485 LVRFLLQHGA 494

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427796951|gb|JAA63927.1| Putative rtk signaling protein mask/unc-44, partial [Rhipicephalus pulchellus]

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 133/190 (70%), Positives = 152/190 (80%), Gaps = 16/190 (8%)

Query: 7   ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           ES LTLA   GH+ M              TD   + L  A+  GHV++A LL++ GA   
Sbjct: 34  ESALTLACYKGHLEMVRFLLEAGADQEHKTDEMHTALMEASMDGHVEVARLLLDSGA--- 90

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           +VNMPTDSFESPLTLAACGGHV+LA+LL+ERGANIEEVNDEGYTPLMEAAREGHEEMV +
Sbjct: 91  QVNMPTDSFESPLTLAACGGHVELAMLLLERGANIEEVNDEGYTPLMEAAREGHEEMVAL 150

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
           LL +GA INA TEETQETALTLACCGGFL+VADFLLK GA +ELGASTPLMEAAQEGHLE
Sbjct: 151 LLSQGADINAQTEETQETALTLACCGGFLEVADFLLKAGAQLELGASTPLMEAAQEGHLE 210

Query: 174 LVRYLLDSGA 183
           L+RYL+++GA
Sbjct: 211 LLRYLINAGA 220

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
ZFIN|ZDB-GENE-090421-1	2607	ankhd1 "ankyrin repeat and KH	0.494	0.066	0.631	3.2e-57
UNIPROTKB|F1RGE8	2540	ANKHD1 "Uncharacterized protei	0.494	0.068	0.621	8e-57
UNIPROTKB|F6XJV3	2539	ANKHD1 "Uncharacterized protei	0.494	0.068	0.621	2.1e-56
UNIPROTKB|E2QVL1	2616	ANKHD1 "Uncharacterized protei	0.494	0.066	0.621	2.3e-56
UNIPROTKB|F6XSE4	2650	ANKHD1 "Uncharacterized protei	0.494	0.065	0.621	2.4e-56
UNIPROTKB|G3MZJ0	2540	EIF4EBP3 "Uncharacterized prot	0.494	0.068	0.621	7.1e-56
UNIPROTKB|E1B719	2616	EIF4EBP3 "Uncharacterized prot	0.494	0.066	0.621	7.7e-56
UNIPROTKB|Q8IWZ3	2542	ANKHD1 "Ankyrin repeat and KH	0.494	0.068	0.626	3.9e-55
UNIPROTKB|E1BXT7	2531	ANKHD1 "Uncharacterized protei	0.494	0.068	0.626	2.7e-54
UNIPROTKB|E9PTK9	2540	Ankhd1 "Protein Ankhd1" [Rattu	0.494	0.068	0.621	5.6e-54

ZFIN|ZDB-GENE-090421-1 ankhd1 "ankyrin repeat and KH domain containing 1" [Danio rerio (taxid:7955)]

 Score = 565 (203.9 bits), Expect = 3.2e-57, Sum P(2) = 3.2e-57
 Identities = 120/190 (63%), Positives = 137/190 (72%)

Query:     7 ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
             ES LTLA   GH++M              TD   + L  A   GHV++A LL++ GA   
Sbjct:   368 ESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGA--- 424

Query:    54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
             +VNMP DSFESPLTLAACGGHV+LA LLIERGAN+EEVNDEGYTPLMEAAREGHEEMV +
Sbjct:   425 QVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVAL 484

Query:   114 LLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
             LL +GA INA             CCGGFL+VADFL+K GA+IELG STPLMEAAQEGHLE
Sbjct:   485 LLAQGANINAQTEETQETALTLACCGGFLEVADFLIKAGADIELGCSTPLMEAAQEGHLE 544

Query:   174 LVRYLLDSGA 183
             LV+YLL +GA
Sbjct:   545 LVKYLLAAGA 554

GO:0003723 "RNA binding" evidence=IEA

GO:0060047 "heart contraction" evidence=IMP

UNIPROTKB|F1RGE8 ANKHD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 556 (200.8 bits), Expect = 8.0e-57, Sum P(2) = 8.0e-57
 Identities = 118/190 (62%), Positives = 136/190 (71%)

Query:     7 ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
             ES LTLA   GH++M              TD   + L  A   GHV++A LL++ GA   
Sbjct:   368 ESALTLACYKGHLDMVRFLLDAGADQEHKTDEMHTALMEARMDGHVEVARLLLDSGA--- 424

Query:    54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
             +VNMP DSFESPLTLAACGGHV+LA LLIERGAN+EEVNDEGYTPLMEAAREGHEEMV +
Sbjct:   425 QVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVAL 484

Query:   114 LLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
             LL +GA INA             CCGGF +VADFL+K GA+IELG STPLMEA+QEGHLE
Sbjct:   485 LLAQGANINAQTEETQETALTLACCGGFAEVADFLIKAGADIELGCSTPLMEASQEGHLE 544

Query:   174 LVRYLLDSGA 183
             LV+YLL +GA
Sbjct:   545 LVKYLLAAGA 554

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F6XJV3 ANKHD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 556 (200.8 bits), Expect = 2.1e-56, Sum P(2) = 2.1e-56
 Identities = 118/190 (62%), Positives = 136/190 (71%)

Query:     7 ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
             ES LTLA   GH++M              TD   + L  A   GHV++A LL++ GA   
Sbjct:   368 ESALTLACYKGHLDMVRFLLDAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGA--- 424

Query:    54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
             +VNMP DSFESPLTLAACGGHV+LA LLIERGAN+EEVNDEGYTPLMEAAREGHEEMV +
Sbjct:   425 QVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVAL 484

Query:   114 LLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
             LL +GA INA             CCGGF +VADFL+K GA+IELG STPLMEA+QEGHLE
Sbjct:   485 LLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIELGCSTPLMEASQEGHLE 544

Query:   174 LVRYLLDSGA 183
             LV+YLL +GA
Sbjct:   545 LVKYLLAAGA 554

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E2QVL1 ANKHD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 556 (200.8 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
 Identities = 118/190 (62%), Positives = 136/190 (71%)

Query:     7 ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
             ES LTLA   GH++M              TD   + L  A   GHV++A LL++ GA   
Sbjct:   368 ESALTLACYKGHLDMVRFLLDAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGA--- 424

Query:    54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
             +VNMP DSFESPLTLAACGGHV+LA LLIERGAN+EEVNDEGYTPLMEAAREGHEEMV +
Sbjct:   425 QVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVAL 484

Query:   114 LLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
             LL +GA INA             CCGGF +VADFL+K GA+IELG STPLMEA+QEGHLE
Sbjct:   485 LLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIELGCSTPLMEASQEGHLE 544

Query:   174 LVRYLLDSGA 183
             LV+YLL +GA
Sbjct:   545 LVKYLLAAGA 554

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F6XSE4 ANKHD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 556 (200.8 bits), Expect = 2.4e-56, Sum P(2) = 2.4e-56
 Identities = 118/190 (62%), Positives = 136/190 (71%)

Query:     7 ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
             ES LTLA   GH++M              TD   + L  A   GHV++A LL++ GA   
Sbjct:   368 ESALTLACYKGHLDMVRFLLDAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGA--- 424

Query:    54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
             +VNMP DSFESPLTLAACGGHV+LA LLIERGAN+EEVNDEGYTPLMEAAREGHEEMV +
Sbjct:   425 QVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVAL 484

Query:   114 LLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
             LL +GA INA             CCGGF +VADFL+K GA+IELG STPLMEA+QEGHLE
Sbjct:   485 LLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIELGCSTPLMEASQEGHLE 544

Query:   174 LVRYLLDSGA 183
             LV+YLL +GA
Sbjct:   545 LVKYLLAAGA 554

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|G3MZJ0 EIF4EBP3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 556 (200.8 bits), Expect = 7.1e-56, Sum P(2) = 7.1e-56
 Identities = 118/190 (62%), Positives = 136/190 (71%)

Query:     7 ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
             ES LTLA   GH++M              TD   + L  A   GHV++A LL++ GA   
Sbjct:   367 ESALTLACYKGHLDMVRFLLDAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGA--- 423

Query:    54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
             +VNMP DSFESPLTLAACGGHV+LA LLIERGAN+EEVNDEGYTPLMEAAREGHEEMV +
Sbjct:   424 QVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVAL 483

Query:   114 LLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
             LL +GA INA             CCGGF +VADFL+K GA+IELG STPLMEA+QEGHLE
Sbjct:   484 LLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIELGCSTPLMEASQEGHLE 543

Query:   174 LVRYLLDSGA 183
             LV+YLL +GA
Sbjct:   544 LVKYLLAAGA 553

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E1B719 EIF4EBP3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 556 (200.8 bits), Expect = 7.7e-56, Sum P(2) = 7.7e-56
 Identities = 118/190 (62%), Positives = 136/190 (71%)

Query:     7 ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
             ES LTLA   GH++M              TD   + L  A   GHV++A LL++ GA   
Sbjct:   367 ESALTLACYKGHLDMVRFLLDAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGA--- 423

Query:    54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
             +VNMP DSFESPLTLAACGGHV+LA LLIERGAN+EEVNDEGYTPLMEAAREGHEEMV +
Sbjct:   424 QVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVAL 483

Query:   114 LLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
             LL +GA INA             CCGGF +VADFL+K GA+IELG STPLMEA+QEGHLE
Sbjct:   484 LLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIELGCSTPLMEASQEGHLE 543

Query:   174 LVRYLLDSGA 183
             LV+YLL +GA
Sbjct:   544 LVKYLLAAGA 553

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q8IWZ3 ANKHD1 "Ankyrin repeat and KH domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 559 (201.8 bits), Expect = 3.9e-55, Sum P(2) = 3.9e-55
 Identities = 119/190 (62%), Positives = 136/190 (71%)

Query:     7 ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
             ES LTLA   GH++M              TD   + L  A   GHV++A LL++ GA   
Sbjct:   373 ESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGA--- 429

Query:    54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
             +VNMP DSFESPLTLAACGGHV+LA LLIERGAN+EEVNDEGYTPLMEAAREGHEEMV +
Sbjct:   430 QVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVAL 489

Query:   114 LLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
             LL +GA INA             CCGGF +VADFL+K GA+IELG STPLMEA+QEGHLE
Sbjct:   490 LLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIELGCSTPLMEASQEGHLE 549

Query:   174 LVRYLLDSGA 183
             LV+YLL SGA
Sbjct:   550 LVKYLLASGA 559

GO:0003723 "RNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E1BXT7 ANKHD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 559 (201.8 bits), Expect = 2.7e-54, Sum P(2) = 2.7e-54
 Identities = 119/190 (62%), Positives = 136/190 (71%)

Query:     7 ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
             ES LTLA   GH++M              TD   + L  A   GHV++A LL++ GA   
Sbjct:   364 ESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGA--- 420

Query:    54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
             +VNMP DSFESPLTLAACGGHV+LA LLIERGAN+EEVNDEGYTPLMEAAREGHEEMV +
Sbjct:   421 QVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVAL 480

Query:   114 LLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
             LL +GA INA             CCGGF +VADFL+K GA+IELG STPLMEAAQEGHLE
Sbjct:   481 LLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIELGCSTPLMEAAQEGHLE 540

Query:   174 LVRYLLDSGA 183
             LV+YLL +GA
Sbjct:   541 LVKYLLAAGA 550

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E9PTK9 Ankhd1 "Protein Ankhd1" [Rattus norvegicus (taxid:10116)]

 Score = 556 (200.8 bits), Expect = 5.6e-54, Sum P(2) = 5.6e-54
 Identities = 118/190 (62%), Positives = 136/190 (71%)

Query:     7 ESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
             ES LTLA   GH++M              TD   + L  A   GHV++A LL++ GA   
Sbjct:   366 ESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGA--- 422

Query:    54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
             +VNMP DSFESPLTLAACGGHV+LA LLIERGAN+EEVNDEGYTPLMEAAREGHEEMV +
Sbjct:   423 QVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVAL 482

Query:   114 LLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
             LL +GA INA             CCGGF +VADFL+K GA+IELG STPLMEA+QEGHLE
Sbjct:   483 LLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIELGCSTPLMEASQEGHLE 542

Query:   174 LVRYLLDSGA 183
             LV+YLL +GA
Sbjct:   543 LVKYLLAAGA 552

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99NH0	ANR17_MOUSE	No assigned EC number	0.6894	0.4943	0.0668	yes	N/A
Q9VCA8	ANKHM_DROME	No assigned EC number	0.6789	0.4943	0.0434	yes	N/A
O75179	ANR17_HUMAN	No assigned EC number	0.6894	0.4943	0.0668	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	352
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-35
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-32
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-24
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-23
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-23
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-21
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-18
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-15
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	8e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-07
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	1e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	8e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-06
smart00248	30	smart00248, ANK, ankyrin repeats	2e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-06
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	3e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	9e-06
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	9e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-04
pfam05539	408	pfam05539, Pneumo_att_G, Pneumovirinae attachment	4e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-04
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	5e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	0.001
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.003
smart00248	30	smart00248, ANK, ankyrin repeats	0.003
smart00248	30	smart00248, ANK, ankyrin repeats	0.003
smart00248	30	smart00248, ANK, ankyrin repeats	0.003
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.004
pfam05539	408	pfam05539, Pneumo_att_G, Pneumovirinae attachment	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  124 bits (313), Expect = 4e-35
 Identities = 54/120 (45%), Positives = 77/120 (64%), Gaps = 4/120 (3%)

Query: 63  ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
            +PL LAA  GH+++  LL+E GA++   +++G TPL  AA+ GH E+V +LL+KGA +N
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN 67

Query: 123 AHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLL 179
           A  ++   T L LA   G LDV   LLK+GA++        TPL  AA+ GHLE+V+ LL
Sbjct: 68  A-RDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  117 bits (296), Expect = 1e-32
 Identities = 49/123 (39%), Positives = 76/123 (61%), Gaps = 4/123 (3%)

Query: 27  ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
            +PL LAA  GH+++  LL+E GA++   N   +   +PL LAA  GH+++  LL+E+GA
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGADV---NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 87  NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVAD 146
           ++   + +G TPL  AAR G+ ++V +LL+ GA +NA  ++   T L LA   G L+V  
Sbjct: 65  DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD-GRTPLHLAAKNGHLEVVK 123

Query: 147 FLL 149
            LL
Sbjct: 124 LLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  100 bits (250), Expect = 7e-26
 Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 4/97 (4%)

Query: 90  EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLL 149
             +++G TPL  AA  GH E+V +LL+ GA +NA   +   T L LA   G L++   LL
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDND-GRTPLHLAAKNGHLEIVKLLL 60

Query: 150 KNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
           + GA++        TPL  AA+ G+L++V+ LL  GA
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA 97

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 96.7 bits (241), Expect = 1e-24
 Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 16/118 (13%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
            +PL LAA  GH             VN   +   +PL LAA  GH+++  LL+E+GA+  
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-- 65

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMV 111
            VN       +PL LAA  G++D+  LL++ GA++   + +G TPL  AA+ GH E+V
Sbjct: 66  -VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 93.1 bits (232), Expect = 1e-23
 Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 5/94 (5%)

Query: 30  LTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 89
           L LAA  G+++L  LL+E+GA++   +  T      L LAA  G++++  LL+E GA++ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDT-----ALHLAARNGNLEIVKLLLEHGADVN 55

Query: 90  EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
             + +G T L  AAR G+ E+V +LL+ GA IN 
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 90.8 bits (226), Expect = 7e-23
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 6/88 (6%)

Query: 99  LMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELG 158
           L  AA+ G+ E+V +LL+KGA +N    +T   AL LA   G L++   LL++GA++   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDT---ALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 159 AS---TPLMEAAQEGHLELVRYLLDSGA 183
                T L  AA+ G+LE+V+ LL+ GA
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 85.4 bits (212), Expect = 6e-21
 Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 3/92 (3%)

Query: 66  LTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHT 125
           L LAA  G+++L  LL+E+GA++   +    T L  AAR G+ E+V +LL+ GA +NA  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNA-K 57

Query: 126 EETQETALTLACCGGFLDVADFLLKNGANIEL 157
           ++   TAL LA   G L++   LL++GA+I L
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 84.7 bits (210), Expect = 3e-18
 Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 32/168 (19%)

Query: 44  LLIERGANIEEVNMPTDSFESPLTLAACGGHV-----DLALLLIERGANIEEVNDEGYTP 98
           +L++ GA+I   N  T +  +PL   +   +      ++  LL+E GAN+   ++ G TP
Sbjct: 53  ILLDNGADI---NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITP 109

Query: 99  LMEAARE--GHEEMVCVLLQKGAKINAHTEETQETALTLA--CCGGFLDVADFLLKNGAN 154
           L+ A  +      +V  LL  GA +N       E  L L        L +   L+  G +
Sbjct: 110 LLYAISKKSNSYSIVEYLLDNGANVNIKN-SDGENLLHLYLESNKIDLKILKLLIDKGVD 168

Query: 155 I----------ELGA---------STPLMEAAQEGHLELVRYLLDSGA 183
           I            G           TPL  A    + E V+YLLD GA
Sbjct: 169 INAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA 216

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 75.1 bits (185), Expect = 5e-15
 Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 24/161 (14%)

Query: 16  GGHVNMPTDSFESPLTLAACG--GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGG 73
           G +VN P ++  +PL  A         +   L++ GAN+   N+     E+ L L     
Sbjct: 96  GANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV---NIKNSDGENLLHLYLESN 152

Query: 74  HVDLAL--LLIERGAN----------------IEEVNDEGYTPLMEAAREGHEEMVCVLL 115
            +DL +  LLI++G +                I   +  G+TPL  A    + E V  LL
Sbjct: 153 KIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLL 212

Query: 116 QKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
             GA  N    +  +T L +A      ++   LL NG +I+
Sbjct: 213 DLGANPNL-VNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK 252

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 70.6 bits (172), Expect = 4e-14
 Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 10/138 (7%)

Query: 64  SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHE-----EMVCVLLQKG 118
            PL  AA  G   +  LL+  GA++   + +G TPL  AA  G+      E+  +LL+ G
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG 134

Query: 119 A--KINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLE 173
           A   +N   +E   T L  A   G  D+ + LL+ GA+     S   T L  AA+ G +E
Sbjct: 135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIE 194

Query: 174 LVRYLLDSGAQEMQTKHI 191
           LV+ LLD G      K  
Sbjct: 195 LVKLLLDKGLHLSLLKFN 212

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.3 bits (147), Expect = 8e-12
 Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
          + L LAA  G++++  LL+E GA++   N       + L LAA  G++++  LL+E GA+
Sbjct: 30 TALHLAARNGNLEIVKLLLEHGADV---NAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Query: 88 IEEVN 92
          I   +
Sbjct: 87 INLKD 91

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 62.5 bits (151), Expect = 2e-11
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 12/171 (7%)

Query: 24  DSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIE 83
               S L L        L + L+   +                        +   LL + 
Sbjct: 2   KPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLI 61

Query: 84  RGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLAC-----C 138
              ++   + +G  PL  AA +G +++V +LL  GA +NA  +   +T L LA       
Sbjct: 62  VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNA-KDADGDTPLHLAALNGNPP 120

Query: 139 GGFLDVADFLLKNGANIELGAS------TPLMEAAQEGHLELVRYLLDSGA 183
            G ++VA  LL+ GA++++         TPL  AA  G  ++V  LL++GA
Sbjct: 121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA 171

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 58.5 bits (142), Expect = 7e-11
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 16/88 (18%)

Query: 8   SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
           +PL LAA  GH             VN       +PL LAA  G++D+  LL++ GA++  
Sbjct: 42  TPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-- 99

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLI 82
            N       +PL LAA  GH+++  LL+
Sbjct: 100 -NARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 60.6 bits (146), Expect = 1e-10
 Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 5/112 (4%)

Query: 12  LAACGGHVNMPTDSFESPLTLAA-----CGGHVDLALLLIERGANIEEVNMPTDSFESPL 66
           L A G  VN      ++PL LAA       G++++A LL+E GA+++  N+  +   +PL
Sbjct: 92  LLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPL 151

Query: 67  TLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKG 118
             AA  G  D+  LL+E GA+    N  G T L  AA+ G  E+V +LL KG
Sbjct: 152 HWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 59.1 bits (142), Expect = 3e-10
 Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 12/158 (7%)

Query: 1   MPTDSFESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTD 60
           +P  S    L       H+         PL  AA  G   +  LL+  GA++   +    
Sbjct: 48  LPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDAD-- 105

Query: 61  SFESPLTLAA-----CGGHVDLALLLIERGA---NIEEVNDEGYTPLMEAAREGHEEMVC 112
             ++PL LAA       G++++A LL+E GA        +++G TPL  AA  G  ++V 
Sbjct: 106 -GDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVE 164

Query: 113 VLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLK 150
           +LL+ GA  N+       TAL  A   G +++   LL 
Sbjct: 165 LLLEAGADPNSRNSYGV-TALDPAAKNGRIELVKLLLD 201

Length = 235

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 59.3 bits (144), Expect = 8e-10
 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 15/123 (12%)

Query: 16  GGHVNMPTDSFESPLTLAACGGHVDLAL--LLIERGANIE---EVNM------PTDS--- 61
           G +VN+     E+ L L      +DL +  LLI++G +I     VN       P +    
Sbjct: 131 GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDV 190

Query: 62  -FESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAK 120
              +PL  A    + +    L++ GAN   VN  G TPL  A    ++E+  +LL  G  
Sbjct: 191 YGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 250

Query: 121 INA 123
           I  
Sbjct: 251 IKT 253

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 59.2 bits (143), Expect = 8e-10
 Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 3/127 (2%)

Query: 28  SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
           +PL LA     +D+  LLI RGA+ +  N  TD F SPL LA   G +    LLI+  A 
Sbjct: 104 TPLHLATILKKLDIMKLLIARGADPDIPN--TDKF-SPLHLAVMMGDIKGIELLIDHKAC 160

Query: 88  IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF 147
           ++  +  G TPL+ A  +G   +  +LL  GA I+   +     AL  A     +D+   
Sbjct: 161 LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRL 220

Query: 148 LLKNGAN 154
            +K GA+
Sbjct: 221 FIKRGAD 227

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 64  SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
           + L  AA  G ++L   L+E+G +I   +++G T L  AA  G+ E++ +LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 95  GYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLL 149
           G T L +AA  G  E+V  LL+KG  IN   E+   TAL +A   G L+V   LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDED-GNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 10/161 (6%)

Query: 28  SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
           SP+ LA      +   LL++ GA I +V  P    ES L  A   G V     L++ G  
Sbjct: 37  SPIKLAMKFRDSEAIKLLMKHGA-IPDVKYP--DIESELHDAVEEGDVKAVEELLDLGKF 93

Query: 88  IEEV-NDEGYTPLMEAAREGHEEMVCVLLQKGAKIN-AHTEETQETALTLACCGGFLDVA 145
            ++V   +G TPL  A      +++ +L+ +GA  +  +T++   + L LA   G +   
Sbjct: 94  ADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKF--SPLHLAVMMGDIKGI 151

Query: 146 DFLLKNGA--NIELG-ASTPLMEAAQEGHLELVRYLLDSGA 183
           + L+ + A  +IE     TPL+ A  +G + + + LLDSGA
Sbjct: 152 ELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA 192

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 9/156 (5%)

Query: 4   DSFESPLT--LAACGGHVNMPT-DSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTD 60
           D  E+ +T  L + G  +NM       + L  A       L  LL+  GAN   VN+P  
Sbjct: 143 DIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN---VNIPDK 199

Query: 61  SFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPL-MEAAREGHEEMVCVLLQKGA 119
           +  SPL  A    +  +  +L+E GA+ +  +  G TPL +        +++ +LL+ G 
Sbjct: 200 TNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGV 259

Query: 120 KINAHTEETQETALTLACCGGFLDVADFLLKNGANI 155
            +NA +     TAL  +           LL+ GA+I
Sbjct: 260 DVNAKSYILGLTALHSSIKSE--RKLKLLLEYGADI 293

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 53.9 bits (129), Expect = 7e-08
 Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 13/176 (7%)

Query: 16  GGHVNMPTDSFESPLTLAACGGH-VDLALLLIERGANIEEVNMPTDSFESPLTLAAC-GG 73
           G  VN      E+PL L A  G+  +    LI  GA   +VN     + +PL  A+    
Sbjct: 297 GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGA---DVNAADRLYITPLHQASTLDR 353

Query: 74  HVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETAL 133
           + D+ + L+E GAN+   +    TP+  AA   +  ++  LL  GA I A +++   TAL
Sbjct: 354 NKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIG-TAL 412

Query: 134 TLACCGG--FLDVADFLLKNGANIELG---ASTPLMEAAQEG-HLELVRYLLDSGA 183
             A CG   ++ V   L+  GAN+       STPL  A ++   L+++  LLD+GA
Sbjct: 413 HFALCGTNPYMSVKT-LIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGA 467

Length = 682

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 6/123 (4%)

Query: 64  SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
           +PL +AA  G+ D  L+L++   N+   +  G T L  A    H ++  +L    +  + 
Sbjct: 560 TPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP 619

Query: 124 HTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLD 180
           H        L  A     L     LLK G N++      +T L  A  E H+++VR L+ 
Sbjct: 620 H---AAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM 676

Query: 181 SGA 183
           +GA
Sbjct: 677 NGA 679

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 94  EGYTPLMEAAREGHEEMVCVLLQKGAKINAHTE 126
           +G TPL  AAR GH E+V +LL+ GA +NA  +
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 17/126 (13%)

Query: 39  VDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV---DLALLLIERGANIEEVNDEG 95
           +D+  +LIE GA+I   N      E+PL      G++   ++ L +IE GA+   ++ +G
Sbjct: 89  LDIVKILIENGADI---NKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDG 145

Query: 96  YTPLMEAAREGHE---EMVCVLLQKGAKINAHTEETQETALTLACCGGF------LDVAD 146
           +T L    +  H    E++ +LL+KG  IN H  + +    TL C   +       D+  
Sbjct: 146 FTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYD--TLHCYFKYNIDRIDADILK 203

Query: 147 FLLKNG 152
             + NG
Sbjct: 204 LFVDNG 209

Length = 489

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 28/196 (14%)

Query: 16  GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
           G  +N+  D   +PL  A   G   +  L I+ GA+I  +N  T      LT    G H 
Sbjct: 25  GNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHIN--TKIPHPLLTAIKIGAHD 82

Query: 76  DLALLLI----------------------ERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
            + LL+                       + G ++   + E  T L  A ++G  E + +
Sbjct: 83  IIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKM 142

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEG 170
           L + GA +N   ++     + +A    F D+   LL+ GA   +      +PL  AA+ G
Sbjct: 143 LFEYGADVNIE-DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYG 201

Query: 171 HLELVRYLLDSGAQEM 186
               ++ L+D G   M
Sbjct: 202 DYACIKLLIDHGNHIM 217

Length = 434

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 22/198 (11%)

Query: 28  SPLTLAACGGHVDLALLLIERGAN--IEEVNMPTDSFESPLTLAACGGHVDLALLLIE-- 83
           +PL +AA  G+ D  L+L++   N  I + N  T  +      A    H  +  +L    
Sbjct: 560 TPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWN-----AISAKHHKIFRILYHFA 614

Query: 84  RGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQ-ETALTLACCGGFL 142
             ++     D     L  AA+      +  LL++G  +N  +E+ Q  TAL +A     +
Sbjct: 615 SISDPHAAGD----LLCTAAKRNDLTAMKELLKQG--LNVDSEDHQGATALQVAMAEDHV 668

Query: 143 DVADFLLKNGANI------ELGASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEF 196
           D+   L+ NGA++      +  + T L E  Q+  L     ++DS   +      D    
Sbjct: 669 DMVRLLIMNGADVDKANTDDDFSPTELRELLQKRELGHSITIVDSVPADEPDLGRDGGSR 728

Query: 197 KKRKQEESKAAFCRGSES 214
             R Q  S    CR   S
Sbjct: 729 PGRLQGTSSDNQCRPRVS 746

Length = 823

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 94  EGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
           +G TPL  AA  G+ E+V +LL KGA INA
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 22/163 (13%)

Query: 44  LLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAA 103
           LL+  GA+I   +    +  + L  A       L  LL+  GAN+   +    +PL  A 
Sbjct: 152 LLLSYGADINMKDRHKGN--TALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAV 209

Query: 104 REGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFL---DVADFLLKNGANIELGAS 160
           +  ++ +V +LL+ GA  +   ++   T L ++   G+    D+   LL++G ++   + 
Sbjct: 210 KHYNKPIVHILLENGASTD-ARDKCGNTPLHISV--GYCKDYDILKLLLEHGVDVNAKSY 266

Query: 161 ----TPLMEAAQ-EGHLELVRYLLDSGAQEMQTKHIDILEFKK 198
               T L  + + E  L+L   LL+ GA       I+ L   K
Sbjct: 267 ILGLTALHSSIKSERKLKL---LLEYGAD------INSLNSYK 300

Length = 477

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 94  EGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
           +G TPL  AAR G+ E+V +LL+ GA INA
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLI 82
          + L  AA  G ++L   L+E+G +I   N   +   + L +AA  G++++  LL+
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDI---NRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 13/62 (20%)

Query: 8  SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
          + L LAA  G+             VN       + L LAA  G++++  LL+E GA+I  
Sbjct: 30 TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Query: 55 VN 56
           +
Sbjct: 90 KD 91

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 35/161 (21%)

Query: 44  LLIERGANIEEVNMPTDSFESPLTL---AACGGHVDLALLLIERGANIEEVNDEGYTPL- 99
            L+  GA+   VN   +  ++PL L    +     D+  LL+E GA++      G+TPL 
Sbjct: 32  RLLAAGAD---VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLH 88

Query: 100 --MEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGF---LDVADFLLKNGAN 154
             +  A     +++ +L++ GA +NA  ++   T L      GF     V   LL+ GA+
Sbjct: 89  LYLYNATT--LDVIKLLIKAGADVNA-KDKVGRTPLH-VYLSGFNINPKVIRLLLRKGAD 144

Query: 155 IE---LGASTPLMEAAQEGH---------LELVRYLLDSGA 183
           +    L   TPL                 +EL+R L+D+GA
Sbjct: 145 VNALDLYGMTPL-------AVLLKSRNANVELLRLLIDAGA 178

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.3 bits (100), Expect = 8e-06
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 81  LIERG-ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLA 136
           L+E G  ++   +  G TPL  AA+ G  E+V  LL+ G  +N    +   TAL LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGL-TALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 47.4 bits (112), Expect = 9e-06
 Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 10/152 (6%)

Query: 39  VDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVD-LALLLIERGANIEEVNDEGYT 97
           ++ +LLL + G ++  ++   D   +PL  A+    +  L   L+ERGA++   N +G T
Sbjct: 253 LETSLLLYDAGFSVNSID---DCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGET 309

Query: 98  PLMEAAREGHE-EMVCVLLQKGAKINAHTEETQETALTLACC-GGFLDVADFLLKNGANI 155
           PL   A+ G++ E +  L+  GA +NA  +    T L  A       D+   LL+ GAN+
Sbjct: 310 PLYLMAKNGYDTENIRTLIMLGADVNA-ADRLYITPLHQASTLDRNKDIVITLLELGANV 368

Query: 156 ---ELGASTPLMEAAQEGHLELVRYLLDSGAQ 184
              +    TP+  AA   ++ ++  LLD GA 
Sbjct: 369 NARDYCDKTPIHYAAVRNNVVIINTLLDYGAD 400

Length = 682

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 257 DQSSVVNVATDST---LSHVTSTPSTSAATTTQTTSPPVVSAASQNTSSATQSSTAATQN 313
           DQSS            L   T+T   +             ++ +   ++A   +    QN
Sbjct: 148 DQSSAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQN 207

Query: 314 ASPATQSSNVATQNTPV---TNLNNAVATLKTAVA 345
           A  A   +NV T  TP        +  A L T  A
Sbjct: 208 AVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQA 242

Length = 331

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 8/148 (5%)

Query: 10  LTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLA 69
           +TL   G +VN      ++P+  AA   +V +   L++ GA+IE +   +    + L  A
Sbjct: 359 ITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEAL---SQKIGTALHFA 415

Query: 70  ACGGHVDLAL-LLIERGANIEEVNDEGYTPLMEAAREGHE-EMVCVLLQKGAKINAHTEE 127
            CG +  +++  LI+RGAN+   N +  TPL  A ++  + +++ +LL  GA +NA   +
Sbjct: 416 LCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQ 475

Query: 128 TQETALTLACCGGFLDVADFLLKNGANI 155
            Q   L       +  + + LL  GA +
Sbjct: 476 NQYPLLIAL---EYHGIVNILLHYGAEL 500

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 14/23 (60%), Positives = 19/23 (82%)

Query: 161 TPLMEAAQEGHLELVRYLLDSGA 183
           TPL  AA+ GHLE+V+ LL++GA
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGA 26

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 49/155 (31%), Positives = 68/155 (43%), Gaps = 11/155 (7%)

Query: 6   FESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESP 65
            ES   L   G  VN+  D+   P+ +A      D+  LL+E+GA     N+  ++ ESP
Sbjct: 137 LESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA---NVKDNNGESP 193

Query: 66  LTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHT 125
           L  AA  G      LLI+ G +I      G+TPL  A    H      LL   A IN   
Sbjct: 194 LHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAII--HNRSAIELLINNASIND-Q 250

Query: 126 EETQETALTLAC---CGGFLDVADFLLKNGANIEL 157
           +    T L  A    C   +D+ D LL + A+I +
Sbjct: 251 DIDGSTPLHHAINPPCD--IDIIDILLYHKADISI 283

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 45  LIERGANIEEVNMPTDSFESPLTLAACGGHVDLALL--LIERGANIEEVNDEGYTPLMEA 102
           LI  G +    +M      +PL   A G     +L+  L+  G +I   N  G TPL  A
Sbjct: 208 LIRAGCDPAATDM---LGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYA 264

Query: 103 AREGHEEMVCVLLQKGAKINAHTEETQETALTLA 136
           A   +      L+  GA INA +     T L+L 
Sbjct: 265 AVFNNPRACRRLIALGADINAVS-SDGNTPLSLM 297

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 11  TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGA--NIEEVNMPTDSFESPLTL 68
            L A G   ++P     SPL LA   G +    LLI+  A  +IE+    T     PL +
Sbjct: 120 LLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCT-----PLII 174

Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHE-EMVCVLLQKGAKINAHTEE 127
           A   G + +  +L++ GANI+     G    +  A E ++ ++V + +++GA  N     
Sbjct: 175 AMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMI 234

Query: 128 TQETALTL 135
             E    L
Sbjct: 235 EGEECTIL 242

Length = 413

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 63 ESPLTLAACGGHVDLALLLIERGANIEEVND 93
           +PL LAA  GH+++  LL+E GA++   + 
Sbjct: 3  NTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 39/176 (22%)

Query: 23  TDSF---ESPLTLAACGGHVDLALLLIERGANI-------EEVNMP-TDSF---ESPLTL 68
           T  F    + L LAA   + ++  LL+ERGA++         V     DSF   ESPL  
Sbjct: 122 TSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNA 181

Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPL----MEAA-REGHEEMVCVLLQKGAKINA 123
           AAC G   +  LL E  A+I   +  G T L    ME   +  +EE+ C +      +  
Sbjct: 182 AACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLD 241

Query: 124 HTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLL 179
              +++E  + L               N   +     TPL  AA+EG + L R  L
Sbjct: 242 KLRDSKELEVIL---------------NHQGL-----TPLKLAAKEGRIVLFRLKL 277

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 27 ESPLTLAACGGHVDLALLLIERGANIEEVN 56
           +PL LAA  GH+++  LL+E GA++   +
Sbjct: 3  NTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 14/23 (60%), Positives = 18/23 (78%)

Query: 161 TPLMEAAQEGHLELVRYLLDSGA 183
           TPL  AA+ G+LE+V+ LLD GA
Sbjct: 4   TPLHLAAENGNLEVVKLLLDKGA 26

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 10  LTLAACGGHVNMPTDSFESPLTLAACGGHV-DLALLLIERGANIEEVNMPTDSFESPLTL 68
             L   G  VN P     +PL L        D+  LLI+ GA++   +    +   PL +
Sbjct: 67  RLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRT---PLHV 123

Query: 69  AACGG--HVDLALLLIERGANIEEVNDEGYTPL 99
              G   +  +  LL+ +GA++  ++  G TPL
Sbjct: 124 YLSGFNINPKVIRLLLRKGADVNALDLYGMTPL 156

Length = 471

>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 3/120 (2%)

Query: 212 SESTPTVSSKQAVKTTFPPVSTEPSGKPSDPPNSGKTKEPPNSGDDQSSVVNVATDSTLS 271
             ST  V ++    ++ P   TEP   PS    SG  + PP S   Q             
Sbjct: 213 LSSTEPVGTQGTTTSSNPEPQTEP--PPSQRGPSGSPQHPP-STTSQDQSTTGDGQEHTQ 269

Query: 272 HVTSTPSTSAATTTQTTSPPVVSAASQNTSSATQSSTAATQNASPATQSSNVATQNTPVT 331
              + P+TS   +  +T+ P  +   Q T   T   TA TQ+ S    SS    Q  P T
Sbjct: 270 RRKTPPATSNRRSPHSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTT 329

Length = 408

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 83  ERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFL 142
            +  ++  ++ +    ++EA      E+  +LL  GA IN        TAL  A      
Sbjct: 128 IQTIDLVYIDKKSKDDIIEA------EITKLLLSYGADINMKDRHKGNTALHYATENKDQ 181

Query: 143 DVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
            + + LL  GAN+   +   ++PL  A +  +  +V  LL++GA
Sbjct: 182 RLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGA 225

Length = 477

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 45/155 (29%)

Query: 39  VDLALLLIERGANIEEVNMPTDSFESPL-TLAA----CGGHVDLALLLIERGANIEEVND 93
            D+  L I  GAN   VN   + + +PL T+ +        +D+  +LIE GA+I + N 
Sbjct: 51  TDIVKLFINLGAN---VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNS 107

Query: 94  EGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGA 153
           +G TPL              LL  G  IN                   L++  F+++NGA
Sbjct: 108 DGETPL------------YCLLSNGY-INN------------------LEILLFMIENGA 136

Query: 154 NIELGAS---TPLMEAAQEGH---LELVRYLLDSG 182
           +  L      T L    Q  H   +E+++ LL+ G
Sbjct: 137 DTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG 171

Length = 489

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 45  LIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEA 102
           L+E G    ++N    +  +PL LAA  G ++L   L++ G ++   + +G T L  A
Sbjct: 1   LLEHGP--IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 130 ETALTLACCGGFLDVADFLLKNGANI 155
            T L LA   G L+V   LL+ GA++
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 27/170 (15%)

Query: 11  TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
           T+  CG  VN+     ++ L  A   G ++   +L E GA   +VN+  D+   P+ +A 
Sbjct: 109 TILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGA---DVNIEDDNGCYPIHIAI 165

Query: 71  CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQE 130
                D+  LL+E+GA     ++ G +PL  AA  G    + +L+  G  I         
Sbjct: 166 KHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI--------- 216

Query: 131 TALTLACCGGFLDVADFLLKNGANIEL------------GASTPLMEAAQ 168
                 C  GF  + + ++ N + IEL              STPL  A  
Sbjct: 217 ---MNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAIN 263

Length = 434

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 14/23 (60%), Positives = 18/23 (78%)

Query: 161 TPLMEAAQEGHLELVRYLLDSGA 183
           TPL  AA+ G+LELV+ LL+ GA
Sbjct: 4   TPLHLAARNGNLELVKLLLEHGA 26

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 232 STEPSGKPSDPPNSGKTKEPPNSGDDQSSVVNVATDSTLSHVTSTPSTSAATTTQTTSPP 291
           +  P    S P  S  +     S D  S+VV  +T     H+ S P+T +   + +TSPP
Sbjct: 563 AGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPP 622

Query: 292 V--VSAASQNTSSATQSSTAATQNASPATQSSNVATQNTPVT 331
              + + S   SS   S   A+   +    S  VA+  + V+
Sbjct: 623 ASHLGSPSTTPSSPESSIKVASTETASPESSIKVASTESSVS 664

Length = 670

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 21/110 (19%)

Query: 16  GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
           G  +N+      +PL  A    + +    L++ GAN    N+     ++PL +A    + 
Sbjct: 182 GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANP---NLVNKYGDTPLHIAILNNNK 238

Query: 76  DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHT 125
           ++  LL+  G +I+ + +                   +L  K   +N  T
Sbjct: 239 EIFKLLLNNGPSIKTIIE------------------TLLYFKDKDLNTIT 270

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL 157
           LL+ G      T+    T L LA   G L++  +LLK G ++ L
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL 44

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 32  LAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 91
           LAA G  V   +LL   GA+    +       +PL +A   GHV +  +L+E GA+   +
Sbjct: 89  LAASGDAVGARILL-TGGADPNCRDYDG---RTPLHIACANGHVQVVRVLLEFGADPTLL 144

Query: 92  NDEGYTPLMEAAREGHEEMVCVLL 115
           + +G TPL  A   G  E+V +L 
Sbjct: 145 DKDGKTPLELAEENGFREVVQLLS 168

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 68  LAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEE 127
           LAA G  V   +LL   GA+    + +G TPL  A   GH ++V VLL+ GA      ++
Sbjct: 89  LAASGDAVGARILL-TGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL-LDK 146

Query: 128 TQETALTLACCGGFLDVADFLLKNG-ANIELGASTPLME-AAQEGHLEL 174
             +T L LA   GF +V   L ++   + ELGA+        +   LE 
Sbjct: 147 DGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED 195

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 161 TPLMEAAQEGHLELVRYLLDSGAQ 184
           T L +AA  G LELV+YLL+ G  
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVD 26

Length = 54

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 11/27 (40%), Positives = 20/27 (74%)

Query: 28 SPLTLAACGGHVDLALLLIERGANIEE 54
          +PL LAA  G++++  LL+++GA+I  
Sbjct: 4  TPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 11/27 (40%), Positives = 20/27 (74%)

Query: 64 SPLTLAACGGHVDLALLLIERGANIEE 90
          +PL LAA  G++++  LL+++GA+I  
Sbjct: 4  TPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 131 TALTLACCGGFLDVADFLLKNGANIEL 157
           T L LA   G L+V   LL  GA+I  
Sbjct: 4   TPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 18/128 (14%)

Query: 16  GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
           G +VN+P  +  SPL  A    +  +  +L+E GA+ +  +   +   +PL ++   G+ 
Sbjct: 191 GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGN---TPLHISV--GYC 245

Query: 76  ---DLALLLIERGANIEEVNDE----GYTPLMEAAREGHEEMVCVLLQKGAKINAHTEET 128
              D+  LL+E G +   VN +    G T L  + +   E  + +LL+ GA IN+     
Sbjct: 246 KDYDILKLLLEHGVD---VNAKSYILGLTALHSSIKS--ERKLKLLLEYGADINSLNSY- 299

Query: 129 QETALTLA 136
           + T L+ A
Sbjct: 300 KLTPLSSA 307

Length = 477

>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G

 Score = 38.5 bits (89), Expect = 0.004
 Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 217 TVSSKQAVKTTFPPVSTEPSGKPSDPPNSGKTKEPPNSGDDQSSVVNVATDSTLSHVTST 276
           T ++ Q + +T  PV T+ +   S+P    +T+ PP+      S       ST S   ST
Sbjct: 206 TATANQRLSST-EPVGTQGTTTSSNPEP--QTEPPPSQRGPSGS--PQHPPSTTSQDQST 260

Query: 277 PSTSAATTTQTTSPPVVSAASQNTSSATQSSTAATQNASPATQSSNVATQNTP 329
                  T +  +PP  S      S+AT   T   Q     T      TQ+  
Sbjct: 261 TGDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPTPRPTATTQSGS 313

Length = 408

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	352
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412|consensus	226		100.0
KOG4412|consensus	226		100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	99.98
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
KOG0508|consensus	615		99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
KOG0509|consensus	600		99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
KOG0510|consensus	929		99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA03095	471	ankyrin-like protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
KOG0509|consensus	600		99.96
KOG0508|consensus	615		99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
KOG4177|consensus	1143		99.94
KOG0510|consensus	929		99.94
KOG0502|consensus	296		99.94
PHA02917	661	ankyrin-like protein; Provisional	99.93
KOG4177|consensus	1143		99.93
PHA02730	672	ankyrin-like protein; Provisional	99.92
KOG0502|consensus	296		99.92
KOG0514|consensus	452		99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
KOG0507|consensus	854		99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.92
PHA02792	631	ankyrin-like protein; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
PHA02741	169	hypothetical protein; Provisional	99.91
PHA02884	300	ankyrin repeat protein; Provisional	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.91
PHA02741	169	hypothetical protein; Provisional	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
PHA02736	154	Viral ankyrin protein; Provisional	99.89
KOG0505|consensus	527		99.89
PHA02736	154	Viral ankyrin protein; Provisional	99.88
KOG0512|consensus	228		99.87
PHA02792	631	ankyrin-like protein; Provisional	99.86
KOG0514|consensus	452		99.86
KOG0507|consensus	854		99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.83
KOG0505|consensus	527		99.82
KOG0195|consensus	448		99.82
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.82
KOG0512|consensus	228		99.81
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.8
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.79
KOG3676|consensus	782		99.79
KOG0195|consensus	448		99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.77
KOG4369|consensus	2131		99.77
KOG3676|consensus	782		99.77
KOG4369|consensus	2131		99.74
KOG4214|consensus	117		99.69
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.67
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.67
KOG4214|consensus	117		99.65
KOG0515|consensus	752		99.62
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.55
KOG1710|consensus	396		99.55
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.55
KOG1710|consensus	396		99.54
KOG0515|consensus	752		99.52
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.5
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.49
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.44
KOG0506|consensus	622		99.03
KOG0783|consensus	1267		98.98
KOG0506|consensus	622		98.97
KOG0783|consensus	1267		98.97
KOG0818|consensus	669		98.95
KOG0782|consensus	1004		98.91
KOG0818|consensus	669		98.87
PF13606	30	Ank_3: Ankyrin repeat	98.85
KOG0782|consensus	1004		98.84
PF13606	30	Ank_3: Ankyrin repeat	98.83
KOG0705|consensus	749		98.8
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.76
KOG0705|consensus	749		98.74
KOG3609|consensus	822		98.7
KOG3609|consensus	822		98.7
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.69
KOG0522|consensus	560		98.65
KOG0522|consensus	560		98.59
KOG0511|consensus	516		98.5
KOG0521|consensus	785		98.38
KOG0511|consensus	516		98.38
KOG2384|consensus	223		98.36
KOG2384|consensus	223		98.32
KOG0521|consensus	785		98.25
KOG0520|consensus	975		98.23
KOG0520|consensus	975		98.22
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.68
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	97.36
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.16
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.03
KOG2505|consensus	591		97.01
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.17
KOG2505|consensus	591		96.15
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.06
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.91
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.3
KOG0260|consensus	1605		92.59
KOG0260|consensus	1605		90.98

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-35  Score=264.26  Aligned_cols=186  Identities=16%  Similarity=0.135  Sum_probs=164.2

Q ss_pred             CCCCCccHHHHHHcCCCCCCC-----------CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHH
Q psy5490           2 PTDSFESPLTLAACGGHVNMP-----------TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA   70 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~~n~~-----------d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~   70 (352)
                      +|.+|+||||+|+..|+.+++           ..+|+||||+|+..|+.+++++|+++|+++   +.+|..|+||||+|+
T Consensus        26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Gadv---n~~d~~G~TpLh~Aa  102 (284)
T PHA02791         26 ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGMDD---SQFDDKGNTALYYAV  102 (284)
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHH
Confidence            588999999999987765432           235789999999999999999999999985   667799999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCC-hHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHH
Q psy5490          71 CGGHVDLALLLIERGANIEEVNDEGY-TPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLL  149 (352)
Q Consensus        71 ~~g~~~~v~~Ll~~g~~~~~~d~~G~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  149 (352)
                      ..|+.+++++|+++|++++.++..|+ ||||+|+..|+.+++++|++++.+..  ....|.||||+|+..|+.+++++|+
T Consensus       103 ~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~--d~~~g~TpLh~Aa~~g~~eiv~lLL  180 (284)
T PHA02791        103 DSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNGHVDMMILLL  180 (284)
T ss_pred             HcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc--ccccCccHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999885 89999999999999999999976542  1234789999999999999999999


Q ss_pred             HcCCCCCC---CCCCH-HHHHHHcCCHHHHHHHHHcCCCcccccccc
Q psy5490         150 KNGANIEL---GASTP-LMEAAQEGHLELVRYLLDSGAQEMQTKHID  192 (352)
Q Consensus       150 ~~g~~~~~---~g~t~-L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~  192 (352)
                      ++|+++|.   .|.|| ||+|+..|+.++|++|+++|++.+..+...
T Consensus       181 ~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~  227 (284)
T PHA02791        181 DYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN  227 (284)
T ss_pred             HCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC
Confidence            99999876   45665 999999999999999999999998776543

>KOG4412|consensus

Probab=100.00  E-value=3.9e-36  Score=238.18  Aligned_cols=170  Identities=30%  Similarity=0.431  Sum_probs=156.9

Q ss_pred             CCCCCC-CCChHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCC
Q psy5490          19 VNMPTD-SFESPLTLAACGGHVDLALLLIE-RGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIER-GANIEEVNDEG   95 (352)
Q Consensus        19 ~n~~d~-~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~d~~G   95 (352)
                      +|.++. +|+|||||||..|+.+++++|+. .+..   +|..|..||||||+||..|+.++|+.|+.+ |+|+|..++.|
T Consensus        30 L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~---~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G  106 (226)
T KOG4412|consen   30 LNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVK---PDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGG  106 (226)
T ss_pred             hhccccccCCceeeeeeecCchhHHHHHHhcCCCC---CCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCC
Confidence            455555 99999999999999999999995 4555   355689999999999999999999999998 99999999999


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCH
Q psy5490          96 YTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHL  172 (352)
Q Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~  172 (352)
                      .|+||||+..|+.||+++|+++|+.++. .|..|.||||-|+..|.++++++|+..|+.+|.   .|+||||.|...|+.
T Consensus       107 ~T~LHyAagK~r~eIaqlLle~ga~i~~-kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~  185 (226)
T KOG4412|consen  107 QTCLHYAAGKGRLEIAQLLLEKGALIRI-KDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHP  185 (226)
T ss_pred             cceehhhhcCChhhHHHHHHhcCCCCcc-cccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCc
Confidence            9999999999999999999999999998 588899999999999999999999999998866   799999999999999


Q ss_pred             HHHHHHHHcCCCcccccccc
Q psy5490         173 ELVRYLLDSGAQEMQTKHID  192 (352)
Q Consensus       173 ~~v~~Ll~~ga~~~~~~~~~  192 (352)
                      ++..+|+++||+....+..+
T Consensus       186 d~a~lLV~~gAd~~~edke~  205 (226)
T KOG4412|consen  186 DVAVLLVRAGADTDREDKEG  205 (226)
T ss_pred             hHHHHHHHhccceeeccccC
Confidence            99999999999998888766

>KOG4412|consensus

Probab=100.00  E-value=1.4e-34  Score=229.41  Aligned_cols=162  Identities=33%  Similarity=0.449  Sum_probs=147.4

Q ss_pred             CCC-CCccHHHHHHcCCCCCC--------------CCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCCChH
Q psy5490           2 PTD-SFESPLTLAACGGHVNM--------------PTDSFESPLTLAACGGHVDLALLLIER-GANIEEVNMPTDSFESP   65 (352)
Q Consensus         2 ~~~-~g~t~L~lA~~~~~~n~--------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~n~~~~~g~t~   65 (352)
                      +|+ +|+|+||.||.-|+.++              .|..||||||+||..|+.++|+.|+.+ |+|++.   ....|.|+
T Consensus        33 r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna---~tn~G~T~  109 (226)
T KOG4412|consen   33 RDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNA---TTNGGQTC  109 (226)
T ss_pred             cccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcce---ecCCCcce
Confidence            455 99999999997766443              488899999999999999999999999 999644   55899999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHH
Q psy5490          66 LTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVA  145 (352)
Q Consensus        66 Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v  145 (352)
                      ||+|+..|+++|+++|+++|+.++.+|..|.||||.|+..|.++++++|+..|+.+|. .|..|+||||.|...|+.++.
T Consensus       110 LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~-qDk~G~TpL~~al~e~~~d~a  188 (226)
T KOG4412|consen  110 LHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNT-QDKYGFTPLHHALAEGHPDVA  188 (226)
T ss_pred             ehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCc-ccccCccHHHHHHhccCchHH
Confidence            9999999999999999999999999999999999999999999999999999999999 588899999999999999999


Q ss_pred             HHHHHcCCCCCC---CCCCHHHHHHH
Q psy5490         146 DFLLKNGANIEL---GASTPLMEAAQ  168 (352)
Q Consensus       146 ~~Ll~~g~~~~~---~g~t~L~~A~~  168 (352)
                      .+|+++|++++.   .| |++..|+-
T Consensus       189 ~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  189 VLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             HHHHHhccceeeccccC-chHHHHHH
Confidence            999999999866   34 89877654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.6e-32  Score=241.51  Aligned_cols=171  Identities=19%  Similarity=0.196  Sum_probs=153.6

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChH
Q psy5490          19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTP   98 (352)
Q Consensus        19 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~   98 (352)
                      .+..|.+|+||||+|+..|+.+++++|+++|++++   ..  +|+||||+|+..|+.++|++|+++|++++.+|..|+||
T Consensus        23 a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n---~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~Tp   97 (284)
T PHA02791         23 AFKADVHGHSALYYAIADNNVRLVCTLLNAGALKN---LL--ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTA   97 (284)
T ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc---CC--CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            36789999999999999999999999999999853   33  36899999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCC-CC-CCCCHHHHHHHcCCHHHHH
Q psy5490          99 LMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI-EL-GASTPLMEAAQEGHLELVR  176 (352)
Q Consensus        99 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~-~g~t~L~~A~~~~~~~~v~  176 (352)
                      ||+|+..|+.+++++|+++|++++.+.+..+.||||+|+..|+.+++++|++++.+. |. .|.||||+|+..|+.++++
T Consensus        98 Lh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~  177 (284)
T PHA02791         98 LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMI  177 (284)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHH
Confidence            999999999999999999999998854433359999999999999999999998654 43 4789999999999999999


Q ss_pred             HHHHcCCCccccccccHH
Q psy5490         177 YLLDSGAQEMQTKHIDIL  194 (352)
Q Consensus       177 ~Ll~~ga~~~~~~~~~~~  194 (352)
                      +|+++|++.+..+..+..
T Consensus       178 lLL~~gAd~n~~d~~g~t  195 (284)
T PHA02791        178 LLLDYMTSTNTNNSLLFI  195 (284)
T ss_pred             HHHHCCCCCCcccCCCCC
Confidence            999999998887766554

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-31  Score=255.37  Aligned_cols=184  Identities=25%  Similarity=0.295  Sum_probs=163.5

Q ss_pred             CCCCCccHHHHHHcCCC-------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           2 PTDSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~-------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      ++.+|.||||+|+..++             ++..+.++.||||.|+..|+.+++++|++.|.+..  +..+..|+||||+
T Consensus        31 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g~tpL~~  108 (413)
T PHA02875         31 EIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFAD--DVFYKDGMTPLHL  108 (413)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCccc--ccccCCCCCHHHH
Confidence            45689999999996555             44556788999999999999999999999998753  3345679999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHH
Q psy5490          69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL  148 (352)
Q Consensus        69 A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  148 (352)
                      |+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|
T Consensus       109 A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~TpL~~A~~~g~~eiv~~L  187 (413)
T PHA02875        109 ATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI-EDCCGCTPLIIAMAKGDIAICKML  187 (413)
T ss_pred             HHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998 477899999999999999999999


Q ss_pred             HHcCCCCCC---CC-CCHHHHHHHcCCHHHHHHHHHcCCCcccc
Q psy5490         149 LKNGANIEL---GA-STPLMEAAQEGHLELVRYLLDSGAQEMQT  188 (352)
Q Consensus       149 l~~g~~~~~---~g-~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  188 (352)
                      +++|++++.   .| .+++|+|+..|+.+++++|+++|++.+..
T Consensus       188 l~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        188 LDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             HhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH
Confidence            999999876   33 48999999999999999999999998754

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.3e-31  Score=253.49  Aligned_cols=197  Identities=25%  Similarity=0.340  Sum_probs=170.0

Q ss_pred             CCCCCccHHHHHHcCCC-------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC---------------
Q psy5490           2 PTDSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE---------------   53 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~-------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---------------   53 (352)
                      .++.|.||||.|+..|+             +|..+..|.||||+|+..|+.+++++|+++|+++.               
T Consensus        31 ~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~l  110 (434)
T PHA02874         31 SVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTI  110 (434)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHH
Confidence            46789999999996554             56667889999999999999999999999887643               


Q ss_pred             -----CcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccc
Q psy5490          54 -----EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEET  128 (352)
Q Consensus        54 -----~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~  128 (352)
                           .++..+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++. .+..
T Consensus       111 l~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~-~~~~  189 (434)
T PHA02874        111 LDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV-KDNN  189 (434)
T ss_pred             HHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC-CCCC
Confidence                 2456778899999999999999999999999999999999999999999999999999999999999987 4677


Q ss_pred             cCcHHHHHHHcCCHHHHHHHHHcCCCCC----------------------------------CCCCCHHHHHHHcC-CHH
Q psy5490         129 QETALTLACCGGFLDVADFLLKNGANIE----------------------------------LGASTPLMEAAQEG-HLE  173 (352)
Q Consensus       129 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------------------------------~~g~t~L~~A~~~~-~~~  173 (352)
                      |.||||+|+..|+.+++++|+++|++++                                  ..|+||||+|+..+ +.+
T Consensus       190 g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~  269 (434)
T PHA02874        190 GESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDID  269 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHH
Confidence            9999999999999999999999987642                                  24778888888765 789


Q ss_pred             HHHHHHHcCCCccccccccHHHHHHH
Q psy5490         174 LVRYLLDSGAQEMQTKHIDILEFKKR  199 (352)
Q Consensus       174 ~v~~Ll~~ga~~~~~~~~~~~~~~~~  199 (352)
                      ++++|+++|++....+..+.++....
T Consensus       270 iv~~Ll~~gad~n~~d~~g~TpL~~A  295 (434)
T PHA02874        270 IIDILLYHKADISIKDNKGENPIDTA  295 (434)
T ss_pred             HHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence            99999999999888887777766554

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.98  E-value=5.4e-31  Score=254.87  Aligned_cols=191  Identities=23%  Similarity=0.271  Sum_probs=164.8

Q ss_pred             CCCccHHHHHHcC-------------CCCCCCCCCCChHHHHHHHcCCHH------------------------------
Q psy5490           4 DSFESPLTLAACG-------------GHVNMPTDSFESPLTLAACGGHVD------------------------------   40 (352)
Q Consensus         4 ~~g~t~L~lA~~~-------------~~~n~~d~~g~t~L~~A~~~g~~~------------------------------   40 (352)
                      ..+.||||+|+..             .++|..|..|+||||+||..|+.+                              
T Consensus        35 ~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~  114 (477)
T PHA02878         35 LIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNV  114 (477)
T ss_pred             ccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCH
Confidence            4578899999964             456677888999999998766543                              


Q ss_pred             ----------------------------------HHHHHHHcCCCCCCcCCCCCC-CChHHHHHHHcCCHHHHHHHHHcC
Q psy5490          41 ----------------------------------LALLLIERGANIEEVNMPTDS-FESPLTLAACGGHVDLALLLIERG   85 (352)
Q Consensus        41 ----------------------------------~v~~Ll~~g~~~~~~n~~~~~-g~t~Lh~A~~~g~~~~v~~Ll~~g   85 (352)
                                                        ++++|+++|+++   +..+.. |+||||+|+..|+.+++++|+++|
T Consensus       115 ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi---n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~g  191 (477)
T PHA02878        115 EIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI---NMKDRHKGNTALHYATENKDQRLTELLLSYG  191 (477)
T ss_pred             HHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC---CccCCCCCCCHHHHHHhCCCHHHHHHHHHCC
Confidence                                              555666666664   555677 999999999999999999999999


Q ss_pred             CCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHc-CCHHHHHHHHHcCCCCCC----CCC
Q psy5490          86 ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCG-GFLDVADFLLKNGANIEL----GAS  160 (352)
Q Consensus        86 ~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~----~g~  160 (352)
                      ++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+.. ++.+++++|+++|++++.    .|.
T Consensus       192 ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~-~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~  270 (477)
T PHA02878        192 ANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDA-RDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGL  270 (477)
T ss_pred             CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCC
Confidence            99999999999999999999999999999999999998 577899999999975 789999999999999875    588


Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHHh
Q psy5490         161 TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRK  200 (352)
Q Consensus       161 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  200 (352)
                      ||||+|  .++.+++++|+++|++.+..+..+.+++....
T Consensus       271 TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~  308 (477)
T PHA02878        271 TALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAV  308 (477)
T ss_pred             CHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            999999  56889999999999999998888877766553

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.1e-30  Score=253.23  Aligned_cols=194  Identities=31%  Similarity=0.447  Sum_probs=159.9

Q ss_pred             CCCCccHHHH-----HHc-------------CCCCCCCCCCCChHHHHHH--HcCCHHHHHHHHHcCCCCCCcCCCCCCC
Q psy5490           3 TDSFESPLTL-----AAC-------------GGHVNMPTDSFESPLTLAA--CGGHVDLALLLIERGANIEEVNMPTDSF   62 (352)
Q Consensus         3 ~~~g~t~L~l-----A~~-------------~~~~n~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~n~~~~~g   62 (352)
                      +..|.|+||+     |+.             |.+++..|..|.||||+|+  ..|+.+++++|+++|+++   +..+..|
T Consensus        65 ~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~---~~~~~~g  141 (480)
T PHA03100         65 TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV---NIKNSDG  141 (480)
T ss_pred             cccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC---CccCCCC
Confidence            5667888888     774             4556667888888999888  888888999888888884   5566788


Q ss_pred             ChHHHHHHHcC--CHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccccccc------CcHHH
Q psy5490          63 ESPLTLAACGG--HVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQ------ETALT  134 (352)
Q Consensus        63 ~t~Lh~A~~~g--~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g------~t~L~  134 (352)
                      +||||+|+..|  +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.. +..|      .|+||
T Consensus       142 ~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~-~~~~~~~~~~~t~l~  220 (480)
T PHA03100        142 ENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAG-DIETLLFTIFETPLH  220 (480)
T ss_pred             CcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCC-CCCCCcHHHHHhHHH
Confidence            88999998888  888899888888888888888889999999888888899999888888874 4445      78888


Q ss_pred             HHHHcCC--HHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHHh
Q psy5490         135 LACCGGF--LDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRK  200 (352)
Q Consensus       135 ~A~~~g~--~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  200 (352)
                      +|+..|+  .+++++|+++|+++|.   .|.||||+|+..|+.+++++|+++|++.+..+..+.++...+.
T Consensus       221 ~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~  291 (480)
T PHA03100        221 IAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAI  291 (480)
T ss_pred             HHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence            8888888  8888999988888754   6788999999989999999999999888887777766655443

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.2e-30  Score=253.07  Aligned_cols=182  Identities=30%  Similarity=0.365  Sum_probs=168.8

Q ss_pred             CCCCCccHHHHHH--c-------------CCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCcCCCCCCCCh
Q psy5490           2 PTDSFESPLTLAA--C-------------GGHVNMPTDSFESPLTLAACGG--HVDLALLLIERGANIEEVNMPTDSFES   64 (352)
Q Consensus         2 ~~~~g~t~L~lA~--~-------------~~~~n~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~n~~~~~g~t   64 (352)
                      .|..|.||||+|+  .             |.+++..+..|.||||+|+..|  +.+++++|+++|+++   +..+..|.|
T Consensus       102 ~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di---n~~d~~g~t  178 (480)
T PHA03100        102 PDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI---NAKNRYGYT  178 (480)
T ss_pred             CCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc---ccccCCCCC
Confidence            4778999999999  5             4466777999999999999999  999999999999995   556689999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC------ChHHHHHHHcCc--HHHHHHHHhcCCCcccccccccCcHHHHH
Q psy5490          65 PLTLAACGGHVDLALLLIERGANIEEVNDEG------YTPLMEAAREGH--EEMVCVLLQKGAKINAHTEETQETALTLA  136 (352)
Q Consensus        65 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G------~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  136 (352)
                      |||+|+..|+.+++++|+++|++++..+..|      .|+||+|+..|+  .+++++|+++|++++. .+..|.||||+|
T Consensus       179 pL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~-~d~~g~TpL~~A  257 (480)
T PHA03100        179 PLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINI-KDVYGFTPLHYA  257 (480)
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCC-CCCCCCCHHHHH
Confidence            9999999999999999999999999999999      899999999999  9999999999999998 467899999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Q psy5490         137 CCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQ  187 (352)
Q Consensus       137 ~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  187 (352)
                      +..|+.+++++|+++|++++.   .|.|||++|+..++.+++++|+++|++...
T Consensus       258 ~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        258 VYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT  311 (480)
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHH
Confidence            999999999999999998865   689999999999999999999999997654

>KOG0508|consensus

Probab=99.97  E-value=5e-32  Score=243.24  Aligned_cols=175  Identities=36%  Similarity=0.532  Sum_probs=160.2

Q ss_pred             CCCCccHHHHHHcCCCCCCC----------------------CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Q psy5490           3 TDSFESPLTLAACGGHVNMP----------------------TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTD   60 (352)
Q Consensus         3 ~~~g~t~L~lA~~~~~~n~~----------------------d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~   60 (352)
                      ..+|.|||.+||.+|+.|++                      ..+|-+||..|+..||+++||.|+++|++++.   ...
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~---tT~  115 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVND---TTR  115 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcccc---ccc
Confidence            35688999999999998875                      44688999999999999999999999999643   445


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcC
Q psy5490          61 SFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGG  140 (352)
Q Consensus        61 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  140 (352)
                      ...|||..||.-|++++|++|+++|+|++..|+.|.|+||+||..|+.+|+++|++.|+|+|. ....|+|+||.|+..|
T Consensus       116 TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~-ks~kGNTALH~caEsG  194 (615)
T KOG0508|consen  116 TNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNA-KSYKGNTALHDCAESG  194 (615)
T ss_pred             cCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcch-hcccCchHHHhhhhcc
Confidence            557999999999999999999999999999999999999999999999999999999999998 5778999999999999


Q ss_pred             CHHHHHHHHHcCCCCC--CCCCCHHHHHHHcCCHHHHHHHHHc
Q psy5490         141 FLDVADFLLKNGANIE--LGASTPLMEAAQEGHLELVRYLLDS  181 (352)
Q Consensus       141 ~~~~v~~Ll~~g~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~  181 (352)
                      +++++++|+.+|+.++  ..|.|||..|+..|+.++|++|++.
T Consensus       195 ~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  195 SVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             cHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhcC
Confidence            9999999999998764  4788999999999999999999963

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.7e-30  Score=245.81  Aligned_cols=183  Identities=25%  Similarity=0.259  Sum_probs=164.3

Q ss_pred             CccHHHHHHcCC-------------CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHc
Q psy5490           6 FESPLTLAACGG-------------HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACG   72 (352)
Q Consensus         6 g~t~L~lA~~~~-------------~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~   72 (352)
                      ++++||.|+..|             ++|..+..|.||||+|+..|+.+++++|+++|+++   +..+..++||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~---~~~~~~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP---DVKYPDIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc---cccCCCcccHHHHHHHC
Confidence            567888888654             45666778999999999999999999999999985   44557889999999999


Q ss_pred             CCHHHHHHHHHcCCCCC-CcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHc
Q psy5490          73 GHVDLALLLIERGANIE-EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN  151 (352)
Q Consensus        73 g~~~~v~~Ll~~g~~~~-~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  151 (352)
                      |+.++|++|++.|.+++ ..+.+|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~-~~~~g~tpLh~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI-PNTDKFSPLHLAVMMGDIKGIELLIDH  157 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999998774 4567899999999999999999999999999998 467799999999999999999999999


Q ss_pred             CCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccc
Q psy5490         152 GANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHID  192 (352)
Q Consensus       152 g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~  192 (352)
                      |++++.   .|+||||+|+..|+.+++++|+++|++.+..+..+
T Consensus       158 g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~  201 (413)
T PHA02875        158 KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNG  201 (413)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Confidence            998754   68999999999999999999999999988766554

>KOG0509|consensus

Probab=99.97  E-value=3.9e-31  Score=246.63  Aligned_cols=184  Identities=33%  Similarity=0.425  Sum_probs=165.1

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Q psy5490          16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEG   95 (352)
Q Consensus        16 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G   95 (352)
                      +-+++..|.+|.++||||+.+++++++++|+++|++++.+.  ..-+.||||||+++|++.+|++|+++|+|++.+|.+|
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~g--G~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G  145 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIG--GVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQG  145 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccC--CCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCC
Confidence            44566679999999999999999999999999999976543  2567899999999999999999999999999999999


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCC----CCCCCHHHHHHHcCC
Q psy5490          96 YTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE----LGASTPLMEAAQEGH  171 (352)
Q Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----~~g~t~L~~A~~~~~  171 (352)
                      .++||+|++.|+.-+|-+|+.+|++++. .|.+|+||||+|+..|+...++.|++.|+.++    ..|+||||+|+..|+
T Consensus       146 ~~~lHla~~~~~~~~vayll~~~~d~d~-~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN  224 (600)
T KOG0509|consen  146 LTPLHLAAQFGHTALVAYLLSKGADIDL-RDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGN  224 (600)
T ss_pred             CcHHHHHHHhCchHHHHHHHHhcccCCC-cCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCC
Confidence            9999999999999999999999999999 57889999999999999888999999999874    468999999999999


Q ss_pred             HHHHHHHHHcCCCccccccccHHHHHHHhhH
Q psy5490         172 LELVRYLLDSGAQEMQTKHIDILEFKKRKQE  202 (352)
Q Consensus       172 ~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~  202 (352)
                      .+++++|++.|++....+..+.+++....+.
T Consensus       225 ~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  225 LTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999988888888887777777776665444

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.3e-29  Score=240.79  Aligned_cols=178  Identities=26%  Similarity=0.396  Sum_probs=159.7

Q ss_pred             CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-----------
Q psy5490          18 HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA-----------   86 (352)
Q Consensus        18 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-----------   86 (352)
                      .+|..+.+|.||||+|+..|+.++|++|+++|+++   +..+..|.||||+|+..|+.+++++|+++|+           
T Consensus        27 ~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~---n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~  103 (434)
T PHA02874         27 CINISVDETTTPLIDAIRSGDAKIVELFIKHGADI---NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIE  103 (434)
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCC
Confidence            35667888999999999999999999999999995   5566889999999999999999999988764           


Q ss_pred             ------------CCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490          87 ------------NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN  154 (352)
Q Consensus        87 ------------~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  154 (352)
                                  +++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++
T Consensus       104 ~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~-~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~  182 (434)
T PHA02874        104 KDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI-EDDNGCYPIHIAIKHNFFDIIKLLLEKGAY  182 (434)
T ss_pred             HHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHHCCcHHHHHHHHHCCCC
Confidence                        5677888999999999999999999999999999998 477899999999999999999999999998


Q ss_pred             CCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHH
Q psy5490         155 IEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKR  199 (352)
Q Consensus       155 ~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~  199 (352)
                      ++.   .|+||||+|+..|+.+++++|+++|++....+..+.++....
T Consensus       183 ~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A  230 (434)
T PHA02874        183 ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA  230 (434)
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHH
Confidence            754   689999999999999999999999999887776666665543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.3e-29  Score=242.33  Aligned_cols=178  Identities=24%  Similarity=0.209  Sum_probs=110.0

Q ss_pred             CCCCCCCCChHHHHHH--HcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCcCCC
Q psy5490          19 VNMPTDSFESPLTLAA--CGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGG--HVDLALLLIERGANIEEVNDE   94 (352)
Q Consensus        19 ~n~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~~~~~~d~~   94 (352)
                      +|..|..|+||||+|+  ..++.+++++|+++|+++   +..+..|.||||+|+..+  +.+++++|+++|++++..|..
T Consensus       110 in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~---~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~  186 (471)
T PHA03095        110 VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV---NALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDR  186 (471)
T ss_pred             CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCC
Confidence            3344445555555555  334455555555555553   333344555555554433  345555555555555555555


Q ss_pred             CChHHHHHHHc--CcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCH--HHHHHHHHcCCCCCC---CCCCHHHHHH
Q psy5490          95 GYTPLMEAARE--GHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFL--DVADFLLKNGANIEL---GASTPLMEAA  167 (352)
Q Consensus        95 G~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~~~~---~g~t~L~~A~  167 (352)
                      |+|+||+|+..  ++.+++++|+++|++++. .+..|.||||+|+..|+.  .++++|++.|+++|.   .|+||||+|+
T Consensus       187 g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~-~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~  265 (471)
T PHA03095        187 FRSLLHHHLQSFKPRARIVRELIRAGCDPAA-TDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAA  265 (471)
T ss_pred             CCCHHHHHHHHCCCcHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            55555555543  445566666666666665 355566777777776653  567778888887754   6889999999


Q ss_pred             HcCCHHHHHHHHHcCCCccccccccHHHHHHHh
Q psy5490         168 QEGHLELVRYLLDSGAQEMQTKHIDILEFKKRK  200 (352)
Q Consensus       168 ~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  200 (352)
                      ..|+.+++++|+++|++.+..+..+.++.....
T Consensus       266 ~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~  298 (471)
T PHA03095        266 VFNNPRACRRLIALGADINAVSSDGNTPLSLMV  298 (471)
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            999999999999999998888777766665543

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=4.1e-29  Score=238.16  Aligned_cols=181  Identities=18%  Similarity=0.256  Sum_probs=154.3

Q ss_pred             cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCC-c
Q psy5490          15 CGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGG--HVDLALLLIERGANIEE-V   91 (352)
Q Consensus        15 ~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~~~~~-~   91 (352)
                      .|.++|..|.+|+||||+|+..|+.+++++|+++|+++   +.+|..|+||||+|+..+  ..+++++|+++|++++. .
T Consensus        61 ~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi---n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~  137 (446)
T PHA02946         61 RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADP---NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSV  137 (446)
T ss_pred             CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC---CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCccccc
Confidence            46778889999999999999999999999999999985   667789999999998765  47899999999999985 6


Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcC--CHHHHHHHHHcCCCCCC---CCCCHHHHH
Q psy5490          92 NDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGG--FLDVADFLLKNGANIEL---GASTPLMEA  166 (352)
Q Consensus        92 d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~---~g~t~L~~A  166 (352)
                      |..|.|||| |+..++.+++++|+++|++++. .+..|+||||+|+..+  +.+++++|+++|++++.   .|+||||+|
T Consensus       138 d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~-~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~A  215 (446)
T PHA02946        138 DEEGCGPLL-ACTDPSERVFKKIMSIGFEARI-VDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIV  215 (446)
T ss_pred             CCCCCcHHH-HHHCCChHHHHHHHhccccccc-cCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            889999997 6667889999999999999988 4778999999988755  46899999999998754   788999999


Q ss_pred             HHcC--CHHHHHHHHHcCCCccccccccHHHHHHHhh
Q psy5490         167 AQEG--HLELVRYLLDSGAQEMQTKHIDILEFKKRKQ  201 (352)
Q Consensus       167 ~~~~--~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~  201 (352)
                      +..|  +.+++++|++ |++.+..+..+.++.....+
T Consensus       216 a~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~  251 (446)
T PHA02946        216 CSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIK  251 (446)
T ss_pred             HHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHH
Confidence            9876  7899999885 89988888888777665433

>KOG0510|consensus

Probab=99.97  E-value=6.6e-30  Score=242.94  Aligned_cols=178  Identities=28%  Similarity=0.322  Sum_probs=143.3

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC------------CcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490          20 NMPTDSFESPLTLAACGGHVDLALLLIERGANIE------------EVNMPTDSFESPLTLAACGGHVDLALLLIERGAN   87 (352)
Q Consensus        20 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~   87 (352)
                      |..+..+.+|||.|+..|++++++.+|+.|....            .+|..|.+|.||||+||+.|+.++|+.|+..|++
T Consensus       219 n~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~  298 (929)
T KOG0510|consen  219 NFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS  298 (929)
T ss_pred             ccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc
Confidence            3447778888888888888888888888766432            2456778889999999999999999999999999


Q ss_pred             CCCcCCCCChHHHHHHHcCcHHHHHHHHh-cCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCC------CCCCC
Q psy5490          88 IEEVNDEGYTPLMEAAREGHEEMVCVLLQ-KGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI------ELGAS  160 (352)
Q Consensus        88 ~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~g~  160 (352)
                      ++.++.++.||||.||++|+.++|+-||+ .|..+-...|..|.||||+|++.||.+++++|++.|+..      |.+|.
T Consensus       299 I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~  378 (929)
T KOG0510|consen  299 INSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGN  378 (929)
T ss_pred             ccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCc
Confidence            99999999999999999999999998888 444443335777889999999999999999999988764      45788


Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHH
Q psy5490         161 TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFK  197 (352)
Q Consensus       161 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~  197 (352)
                      ||||.|+.+|+..+|++|+.+|++....+..+...+.
T Consensus       379 TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~  415 (929)
T KOG0510|consen  379 TALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFD  415 (929)
T ss_pred             hhhhHHHHhccHHHHHHHHHcCCceeecccccccccc
Confidence            9999999999999999999999988766655555544

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7.9e-29  Score=249.67  Aligned_cols=194  Identities=29%  Similarity=0.353  Sum_probs=172.6

Q ss_pred             CCCCCccHHHHHHcCC--------------CCCCCCCCCChHHHHHHHcC-CHHHHHHHHHcCCCCCCcCCCCCCCChHH
Q psy5490           2 PTDSFESPLTLAACGG--------------HVNMPTDSFESPLTLAACGG-HVDLALLLIERGANIEEVNMPTDSFESPL   66 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~--------------~~n~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~n~~~~~g~t~L   66 (352)
                      +|..|+||||+|+..+              ++|..|.+|+||||+|+..| +.++++.|+..|+++   +..+..|+|||
T Consensus       269 ~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi---n~~d~~g~TpL  345 (682)
T PHA02876        269 IDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV---NAADRLYITPL  345 (682)
T ss_pred             CCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC---CCcccCCCcHH
Confidence            4678999999999654              46677999999999999999 599999999999995   66779999999


Q ss_pred             HHHHHc-CCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCC-HHH
Q psy5490          67 TLAACG-GHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGF-LDV  144 (352)
Q Consensus        67 h~A~~~-g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~-~~~  144 (352)
                      |+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..++ ..+
T Consensus       346 h~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~-~~~~g~T~Lh~A~~~~~~~~~  424 (682)
T PHA02876        346 HQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEA-LSQKIGTALHFALCGTNPYMS  424 (682)
T ss_pred             HHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccc-cCCCCCchHHHHHHcCCHHHH
Confidence            999985 578999999999999999999999999999999999999999999999998 46678899999998766 567


Q ss_pred             HHHHHHcCCCCCC---CCCCHHHHHHHcC-CHHHHHHHHHcCCCccccccccHHHHHHH
Q psy5490         145 ADFLLKNGANIEL---GASTPLMEAAQEG-HLELVRYLLDSGAQEMQTKHIDILEFKKR  199 (352)
Q Consensus       145 v~~Ll~~g~~~~~---~g~t~L~~A~~~~-~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~  199 (352)
                      +++|+++|+++|.   .|+||||+|+..| +.+++++|+++|++.+..+..+.++....
T Consensus       425 vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a  483 (682)
T PHA02876        425 VKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA  483 (682)
T ss_pred             HHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9999999999865   7899999999876 68999999999999998888877776544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=5.1e-29  Score=245.55  Aligned_cols=176  Identities=19%  Similarity=0.238  Sum_probs=85.3

Q ss_pred             CCCCCC-CCCCChHHHHHHH--cCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCC--HHHHHHHHHcCCCCCCc
Q psy5490          17 GHVNMP-TDSFESPLTLAAC--GGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGH--VDLALLLIERGANIEEV   91 (352)
Q Consensus        17 ~~~n~~-d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~g~~~~~~   91 (352)
                      .++|.. |..|.||||+|+.  .++.+++++|+++|+++   +.+|..|+||||+|+..|+  .++|++|+++|++++.+
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV---N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~k  243 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV---NLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMK  243 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCC
Confidence            344544 4445555554432  23445555555555552   3334455555555555543  24555555555555555


Q ss_pred             CCCCChHHHHH-------------------------------------HHcCcHHHHHHHHhcCCCcccccccccCcHHH
Q psy5490          92 NDEGYTPLMEA-------------------------------------AREGHEEMVCVLLQKGAKINAHTEETQETALT  134 (352)
Q Consensus        92 d~~G~t~L~~A-------------------------------------~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~  134 (352)
                      |..|+||||+|                                     +..|+.+++++|+++|++++. .+..|+||||
T Consensus       244 D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~-kD~~G~TPLH  322 (764)
T PHA02716        244 CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHY-KDSAGRTCLH  322 (764)
T ss_pred             CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceec-cCCCCCCHHH
Confidence            55555555532                                     223445555555555555554 2444555555


Q ss_pred             HHHH--cCCHHHHHHHHHcCCCCCC---CCCCHHHHHHH--------------cCCHHHHHHHHHcCCCccccccccHHH
Q psy5490         135 LACC--GGFLDVADFLLKNGANIEL---GASTPLMEAAQ--------------EGHLELVRYLLDSGAQEMQTKHIDILE  195 (352)
Q Consensus       135 ~A~~--~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~--------------~~~~~~v~~Ll~~ga~~~~~~~~~~~~  195 (352)
                      +|+.  .++.+++++|+++|++++.   .|+||||+|+.              .++.+++++|+++|++....+..+.++
T Consensus       323 ~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TP  402 (764)
T PHA02716        323 QYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTP  402 (764)
T ss_pred             HHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCCh
Confidence            5432  2344555555555555432   34555555443              134555555555555555544444444


Q ss_pred             H
Q psy5490         196 F  196 (352)
Q Consensus       196 ~  196 (352)
                      .
T Consensus       403 L  403 (764)
T PHA02716        403 L  403 (764)
T ss_pred             H
Confidence            3

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6.3e-29  Score=240.43  Aligned_cols=158  Identities=27%  Similarity=0.307  Sum_probs=141.9

Q ss_pred             CCCCCC-CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChH
Q psy5490          20 NMPTDS-FESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTP   98 (352)
Q Consensus        20 n~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~   98 (352)
                      |..+.. |+||||+|+..|+.+++++|+++|+++   +..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus       161 n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~---n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~Tp  237 (477)
T PHA02878        161 NMKDRHKGNTALHYATENKDQRLTELLLSYGANV---NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTP  237 (477)
T ss_pred             CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            344566 999999999999999999999999995   6677999999999999999999999999999999999999999


Q ss_pred             HHHHHHc-CcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcC-CHH
Q psy5490          99 LMEAARE-GHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEG-HLE  173 (352)
Q Consensus        99 L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~-~~~  173 (352)
                      ||+|+.. ++.+++++|+++|++++.+.+..|.||||+|  .++.+++++|+++|+++|.   .|.||||+|+..+ ..+
T Consensus       238 Lh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~  315 (477)
T PHA02878        238 LHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCIN  315 (477)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccc
Confidence            9999975 7899999999999999986555799999999  5788999999999999865   7899999999754 567


Q ss_pred             HHHHHHHcC
Q psy5490         174 LVRYLLDSG  182 (352)
Q Consensus       174 ~v~~Ll~~g  182 (352)
                      ++++|+.++
T Consensus       316 ~~~~li~~~  324 (477)
T PHA02878        316 IGRILISNI  324 (477)
T ss_pred             hHHHHHHHH
Confidence            888887664

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=9e-29  Score=235.85  Aligned_cols=180  Identities=17%  Similarity=0.231  Sum_probs=157.6

Q ss_pred             CCCCCccHHHHHHc-------------CCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCcCCCCCCCChHH
Q psy5490           2 PTDSFESPLTLAAC-------------GGHVNMPTDSFESPLTLAACGG--HVDLALLLIERGANIEEVNMPTDSFESPL   66 (352)
Q Consensus         2 ~~~~g~t~L~lA~~-------------~~~~n~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~n~~~~~g~t~L   66 (352)
                      +|.+|+||||+|+.             |.++|..|.+|.||||+|+..+  ..+++++|+++|++++.  ..+..|.|||
T Consensus        68 ~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~--~~d~~g~tpL  145 (446)
T PHA02946         68 TDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINN--SVDEEGCGPL  145 (446)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCccc--ccCCCCCcHH
Confidence            57889999999995             4567778999999999999866  48999999999999532  3568899999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcC--cHHHHHHHHhcCCCcccccccccCcHHHHHHHcC--CH
Q psy5490          67 TLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREG--HEEMVCVLLQKGAKINAHTEETQETALTLACCGG--FL  142 (352)
Q Consensus        67 h~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g--~~  142 (352)
                      | |+..|+.+++++|+++|++++.+|..|+||||+|+..+  +.+++++|+++|++++. .+..|.||||+|+..|  +.
T Consensus       146 ~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~-~d~~G~TpLH~Aa~~~~~~~  223 (446)
T PHA02946        146 L-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSK-PDHDGNTPLHIVCSKTVKNV  223 (446)
T ss_pred             H-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCCCcH
Confidence            7 66779999999999999999999999999999998754  47999999999999998 4778999999999986  88


Q ss_pred             HHHHHHHHcCCCCCC---CCCCHHHHHHHcCC-HHHHHHHHHcCCCcc
Q psy5490         143 DVADFLLKNGANIEL---GASTPLMEAAQEGH-LELVRYLLDSGAQEM  186 (352)
Q Consensus       143 ~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~-~~~v~~Ll~~ga~~~  186 (352)
                      +++++|+. |+++|.   .|+||||+|++.++ .+++++|+.+|+...
T Consensus       224 ~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~  270 (446)
T PHA02946        224 DIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVIT  270 (446)
T ss_pred             HHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCC
Confidence            99999995 888765   68999999999988 589999999997543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=7.7e-29  Score=240.40  Aligned_cols=168  Identities=21%  Similarity=0.317  Sum_probs=106.9

Q ss_pred             CCCCCCCCCCCChHHHHHHHcC---CHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCC---HHHHHHHHHcCCCCC
Q psy5490          16 GGHVNMPTDSFESPLTLAACGG---HVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGH---VDLALLLIERGANIE   89 (352)
Q Consensus        16 ~~~~n~~d~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~---~~~v~~Ll~~g~~~~   89 (352)
                      |.++|..|..|+||||+|+..+   +.+++++|+++|+++   +..|..|.||||+|+..++   .+++++|+++|++++
T Consensus        99 GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv---n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin  175 (489)
T PHA02798         99 GADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT---TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN  175 (489)
T ss_pred             CCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc---cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcc
Confidence            4556666666777777776654   566677777777663   4455666777777766665   667777777777666


Q ss_pred             CcC-CCCChHHHHHHHc----CcHHHHHHHHhcCCCcccc--------------------------------------cc
Q psy5490          90 EVN-DEGYTPLMEAARE----GHEEMVCVLLQKGAKINAH--------------------------------------TE  126 (352)
Q Consensus        90 ~~d-~~G~t~L~~A~~~----g~~~~v~~Ll~~g~~~~~~--------------------------------------~~  126 (352)
                      ..+ ..|.||||.++..    ++.+++++|+++|++++..                                      .+
T Consensus       176 ~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d  255 (489)
T PHA02798        176 THNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVD  255 (489)
T ss_pred             cccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcC
Confidence            654 3566677666543    3566666666666544321                                      12


Q ss_pred             cccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q psy5490         127 ETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEM  186 (352)
Q Consensus       127 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  186 (352)
                      ..|+||||+|+..|+.+++++|+++|++++.   .|+|||++|+..++.++++.|++++++..
T Consensus       256 ~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        256 ELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             cCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence            3466777777777777777777777766644   46677777777777777777776666543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=1e-28  Score=239.54  Aligned_cols=186  Identities=24%  Similarity=0.347  Sum_probs=165.5

Q ss_pred             HHcCCCCCCCCCCCChHHHHHHHc-----CCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcC---CHHHHHHHHHc
Q psy5490          13 AACGGHVNMPTDSFESPLTLAACG-----GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGG---HVDLALLLIER   84 (352)
Q Consensus        13 A~~~~~~n~~d~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~   84 (352)
                      ...|.++|..|..|.||||.|+..     ++.+++++|+++|+|+   |.+|..|+||||+|+..+   +.+++++|+++
T Consensus        58 l~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi---N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~  134 (489)
T PHA02798         58 INLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI---NKKNSDGETPLYCLLSNGYINNLEILLFMIEN  134 (489)
T ss_pred             HHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC---CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHc
Confidence            336888999999999999999864     6799999999999994   667799999999999876   78999999999


Q ss_pred             CCCCCCcCCCCChHHHHHHHcCc---HHHHHHHHhcCCCcccccccccCcHHHHHHHc----CCHHHHHHHHHcCCCCC-
Q psy5490          85 GANIEEVNDEGYTPLMEAAREGH---EEMVCVLLQKGAKINAHTEETQETALTLACCG----GFLDVADFLLKNGANIE-  156 (352)
Q Consensus        85 g~~~~~~d~~G~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~----g~~~~v~~Ll~~g~~~~-  156 (352)
                      |++++.+|..|+||||+|+..++   .+++++|+++|++++...+..|.||||.++..    ++.+++++|+++|++++ 
T Consensus       135 Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~  214 (489)
T PHA02798        135 GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINK  214 (489)
T ss_pred             CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCccc
Confidence            99999999999999999999988   99999999999999987667789999998764    47999999999987542 


Q ss_pred             -----------------------------------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHH
Q psy5490         157 -----------------------------------------LGASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILE  195 (352)
Q Consensus       157 -----------------------------------------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~  195 (352)
                                                               ..|+||||+|+.+|+.+++++|+++|++.+..+..+.++
T Consensus       215 ~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~Tp  294 (489)
T PHA02798        215 ENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTC  294 (489)
T ss_pred             CCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcH
Confidence                                                     147899999999999999999999999999999888888


Q ss_pred             HHHHhh
Q psy5490         196 FKKRKQ  201 (352)
Q Consensus       196 ~~~~~~  201 (352)
                      ...+.+
T Consensus       295 L~~A~~  300 (489)
T PHA02798        295 LFTAFE  300 (489)
T ss_pred             HHHHHH
Confidence            776554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.3e-28  Score=211.86  Aligned_cols=174  Identities=17%  Similarity=0.212  Sum_probs=151.4

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCcC-CCCChH
Q psy5490          22 PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGG--HVDLALLLIERGANIEEVN-DEGYTP   98 (352)
Q Consensus        22 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~~~~~~d-~~G~t~   98 (352)
                      ....+.+|||+|+..|++++|+.|++.+      +..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|+||
T Consensus        17 ~~~~~~~pL~~A~~~~~~~~vk~Li~~~------n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~Tp   90 (209)
T PHA02859         17 LFYRYCNPLFYYVEKDDIEGVKKWIKFV------NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSA   90 (209)
T ss_pred             HhhccCcHHHHHHHhCcHHHHHHHHHhh------hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCH
Confidence            3567899999999999999999999752      345688999999999854  8999999999999999997 489999


Q ss_pred             HHHHHHc---CcHHHHHHHHhcCCCcccccccccCcHHHHHHH--cCCHHHHHHHHHcCCCCCC---CCCCHHHH-HHHc
Q psy5490          99 LMEAARE---GHEEMVCVLLQKGAKINAHTEETQETALTLACC--GGFLDVADFLLKNGANIEL---GASTPLME-AAQE  169 (352)
Q Consensus        99 L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~---~g~t~L~~-A~~~  169 (352)
                      ||+|+..   ++.+++++|+++|++++. .+..|.||||+|+.  .++.+++++|+++|++++.   .|.||||. |+..
T Consensus        91 Lh~a~~~~~~~~~eiv~~Ll~~gadin~-~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~  169 (209)
T PHA02859         91 LHHYLSFNKNVEPEILKILIDSGSSITE-EDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFH  169 (209)
T ss_pred             HHHHHHhCccccHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhc
Confidence            9998764   479999999999999998 57789999999876  4689999999999999755   78999995 5678


Q ss_pred             CCHHHHHHHHHcCCCccccccccHHHHHHHhhH
Q psy5490         170 GHLELVRYLLDSGAQEMQTKHIDILEFKKRKQE  202 (352)
Q Consensus       170 ~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~  202 (352)
                      ++.+++++|+++|++....+..+.+++..+...
T Consensus       170 ~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        170 SDKKIFDFLTSLGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhh
Confidence            899999999999999999998888887765443

>PHA03095 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.2e-28  Score=236.59  Aligned_cols=196  Identities=22%  Similarity=0.252  Sum_probs=155.8

Q ss_pred             CCCCCccHHHHHHcCC----------------CCCCCCCCCChHHHHHHHcC-CHHHHHHHHHcCCCCCCcCCCCCCCCh
Q psy5490           2 PTDSFESPLTLAACGG----------------HVNMPTDSFESPLTLAACGG-HVDLALLLIERGANIEEVNMPTDSFES   64 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~----------------~~n~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~n~~~~~g~t   64 (352)
                      +|..|+|+||+|+..+                ++|..+..|+||||+|+..| +.+++++|+++|+++   +..+..|+|
T Consensus        43 ~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i---n~~~~~g~t  119 (471)
T PHA03095         43 RGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV---NAKDKVGRT  119 (471)
T ss_pred             CCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC---CCCCCCCCC
Confidence            4667888888888655                56777888888888888888 588888888888884   556678888


Q ss_pred             HHHHHH--HcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcC--cHHHHHHHHhcCCCcccccccccCcHHHHHHHc-
Q psy5490          65 PLTLAA--CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREG--HEEMVCVLLQKGAKINAHTEETQETALTLACCG-  139 (352)
Q Consensus        65 ~Lh~A~--~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-  139 (352)
                      |||+|+  ..++.+++++|+++|++++.+|..|.||||+|+..+  +.+++++|+++|++++.. +..|.|+||+|+.. 
T Consensus       120 pLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~~~~  198 (471)
T PHA03095        120 PLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV-DDRFRSLLHHHLQSF  198 (471)
T ss_pred             HHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHHC
Confidence            888888  556788888888888888888888888888887765  578888888888888875 77788888888764 


Q ss_pred             -CCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCH--HHHHHHHHcCCCccccccccHHHHHHHhh
Q psy5490         140 -GFLDVADFLLKNGANIEL---GASTPLMEAAQEGHL--ELVRYLLDSGAQEMQTKHIDILEFKKRKQ  201 (352)
Q Consensus       140 -g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~--~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~  201 (352)
                       ++.+++++|+++|++++.   .|+||||+|+..|+.  .++++|++.|++.+..+..+.++...+..
T Consensus       199 ~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~  266 (471)
T PHA03095        199 KPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAV  266 (471)
T ss_pred             CCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence             677888888888888754   678888888888764  57788888888888877777777665543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2e-28  Score=237.74  Aligned_cols=180  Identities=23%  Similarity=0.304  Sum_probs=121.6

Q ss_pred             CCCCCCCCCCChHHHHHHHcC------CHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCC
Q psy5490          17 GHVNMPTDSFESPLTLAACGG------HVDLALLLIERGANIEEVNMPTDSFESPLTLAACG---GHVDLALLLIERGAN   87 (352)
Q Consensus        17 ~~~n~~d~~g~t~L~~A~~~g------~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~   87 (352)
                      +++|..+ .+.||||.|+..+      +.+++++|+++|+|+   |.++..|+||||.|+..   ++.++|++|+++|+|
T Consensus        61 Advn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi---n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gad  136 (494)
T PHA02989         61 ADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI---NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGIN  136 (494)
T ss_pred             CCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCC
Confidence            3445444 4567777776543      356777777777773   55566777777766544   566777777777777


Q ss_pred             C-CCcCCCCChHHHHHHHc--CcHHHHHHHHhcCCCcccccccccCcHHHHHHHcC----CHHHHHHHHHcCCCCCC---
Q psy5490          88 I-EEVNDEGYTPLMEAARE--GHEEMVCVLLQKGAKINAHTEETQETALTLACCGG----FLDVADFLLKNGANIEL---  157 (352)
Q Consensus        88 ~-~~~d~~G~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g----~~~~v~~Ll~~g~~~~~---  157 (352)
                      + +.+|..|+||||+|+..  ++.+++++|+++|++++...+..|.||||+|+..+    +.+++++|+++|++++.   
T Consensus       137 in~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~  216 (494)
T PHA02989        137 VNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNN  216 (494)
T ss_pred             cccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCC
Confidence            7 66777777777776643  46777777777777776644556777777776543    67777777777765431   


Q ss_pred             --------------------------------------CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHH
Q psy5490         158 --------------------------------------GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKR  199 (352)
Q Consensus       158 --------------------------------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~  199 (352)
                                                            .|+||||+|+..|+.+++++|+++|++.+..+..+.++...+
T Consensus       217 ~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A  296 (494)
T PHA02989        217 GSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYA  296 (494)
T ss_pred             ccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence                                                  266788888888888888888888887777776666665544


Q ss_pred             h
Q psy5490         200 K  200 (352)
Q Consensus       200 ~  200 (352)
                      .
T Consensus       297 ~  297 (494)
T PHA02989        297 I  297 (494)
T ss_pred             H
Confidence            3

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.9e-28  Score=237.88  Aligned_cols=179  Identities=21%  Similarity=0.296  Sum_probs=154.0

Q ss_pred             CCccHHHHHH-------------------cCCCCCCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCcCCCCCCC
Q psy5490           5 SFESPLTLAA-------------------CGGHVNMPTDSFESPLTLAACG---GHVDLALLLIERGANIEEVNMPTDSF   62 (352)
Q Consensus         5 ~g~t~L~lA~-------------------~~~~~n~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~n~~~~~g   62 (352)
                      .+.||||.|+                   .|.++|..|..|.||||.|+..   |+.+++++|+++|+|++  +..|..|
T Consensus        68 ~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin--~~~d~~g  145 (494)
T PHA02989         68 YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVN--DVKNSRG  145 (494)
T ss_pred             CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcc--cccCCCC
Confidence            4688998874                   3567888899999999988765   67999999999999952  4567889


Q ss_pred             ChHHHHHHHc--CCHHHHHHHHHcCCCCCC-cCCCCChHHHHHHHcC----cHHHHHHHHhcCCCccccc----------
Q psy5490          63 ESPLTLAACG--GHVDLALLLIERGANIEE-VNDEGYTPLMEAAREG----HEEMVCVLLQKGAKINAHT----------  125 (352)
Q Consensus        63 ~t~Lh~A~~~--g~~~~v~~Ll~~g~~~~~-~d~~G~t~L~~A~~~g----~~~~v~~Ll~~g~~~~~~~----------  125 (352)
                      +||||+|+..  ++.++|++|+++|++++. .+..|.||||+|++.+    +.+++++|+++|++++...          
T Consensus       146 ~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~  225 (494)
T PHA02989        146 YNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESF  225 (494)
T ss_pred             CCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHH
Confidence            9999998754  689999999999999988 6788999999998764    8899999999998876432          


Q ss_pred             ---------------------------ccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHH
Q psy5490         126 ---------------------------EETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELV  175 (352)
Q Consensus       126 ---------------------------~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v  175 (352)
                                                 +..|+||||+|+..|+.+++++|+++|++++.   .|+||||+|+..|+.++|
T Consensus       226 ~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv  305 (494)
T PHA02989        226 LDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDML  305 (494)
T ss_pred             HHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHH
Confidence                                       34589999999999999999999999999865   789999999999999999


Q ss_pred             HHHHHcCCCc
Q psy5490         176 RYLLDSGAQE  185 (352)
Q Consensus       176 ~~Ll~~ga~~  185 (352)
                      ++|++.+...
T Consensus       306 ~~LL~~~p~~  315 (494)
T PHA02989        306 NRILQLKPGK  315 (494)
T ss_pred             HHHHhcCCCh
Confidence            9999987643

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=1.7e-28  Score=241.93  Aligned_cols=177  Identities=20%  Similarity=0.232  Sum_probs=152.4

Q ss_pred             CCCCccHHHHHH---------------cCCCCCCCCCCCChHHHHHHHcCC--HHHHHHHHHcCCCCCCcCCCCCCCChH
Q psy5490           3 TDSFESPLTLAA---------------CGGHVNMPTDSFESPLTLAACGGH--VDLALLLIERGANIEEVNMPTDSFESP   65 (352)
Q Consensus         3 ~~~g~t~L~lA~---------------~~~~~n~~d~~g~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~n~~~~~g~t~   65 (352)
                      |+.|+|+||.|+               .|.++|..|..|+||||+|+..|+  .++|++|+++|+|+   |.++..|+||
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV---N~kD~~G~TP  250 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM---DMKCVNGMSP  250 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC---CCCCCCCCCH
Confidence            678999999875               356888899999999999999995  48999999999995   6677999999


Q ss_pred             HHHH-------------------------------------HHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHH--cC
Q psy5490          66 LTLA-------------------------------------ACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAR--EG  106 (352)
Q Consensus        66 Lh~A-------------------------------------~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~--~g  106 (352)
                      ||+|                                     +..|+.++|++|+++|++++.+|..|+||||+|+.  .+
T Consensus       251 Lh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~  330 (764)
T PHA02716        251 IMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNI  330 (764)
T ss_pred             HHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCC
Confidence            9975                                     34578899999999999999999999999999864  46


Q ss_pred             cHHHHHHHHhcCCCcccccccccCcHHHHHHH--------------cCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHc
Q psy5490         107 HEEMVCVLLQKGAKINAHTEETQETALTLACC--------------GGFLDVADFLLKNGANIEL---GASTPLMEAAQE  169 (352)
Q Consensus       107 ~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~--------------~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~  169 (352)
                      +.+++++|+++|++++. .+..|+||||+|+.              .++.+++++|+++|++++.   .|+||||    .
T Consensus       331 ~~eIVklLLe~GADIN~-kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh----~  405 (764)
T PHA02716        331 STDIIKLLHEYGNDLNE-PDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLT----S  405 (764)
T ss_pred             CchHHHHHHHcCCCCcc-CCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHH----H
Confidence            88999999999999998 47789999999875              3689999999999999865   7899996    4


Q ss_pred             --------CCHHHHHHHHHcCCCccc
Q psy5490         170 --------GHLELVRYLLDSGAQEMQ  187 (352)
Q Consensus       170 --------~~~~~v~~Ll~~ga~~~~  187 (352)
                              ++.+++++|++.|+....
T Consensus       406 y~~~a~n~~~~dIvklLis~~~~~~~  431 (764)
T PHA02716        406 YICTAQNYMYYDIIDCLISDKVLNMV  431 (764)
T ss_pred             HHHHHHhcChHHHHHHHHhCcchhhh
Confidence                    246899999998876543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=4.5e-28  Score=208.57  Aligned_cols=163  Identities=20%  Similarity=0.208  Sum_probs=142.6

Q ss_pred             CCCccHHHHHHcCCC----------CCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCcCCCC-CCCChHHHHHH
Q psy5490           4 DSFESPLTLAACGGH----------VNMPTDSFESPLTLAACGG--HVDLALLLIERGANIEEVNMPT-DSFESPLTLAA   70 (352)
Q Consensus         4 ~~g~t~L~lA~~~~~----------~n~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~n~~~-~~g~t~Lh~A~   70 (352)
                      ..+.+|||.|+..++          +|..|..|.||||+|+..+  +.+++++|+++|+++   +.++ ..|+||||+|+
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv---n~~~~~~g~TpLh~a~   95 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKFVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV---NFKTRDNNLSALHHYL   95 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHhhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC---CccCCCCCCCHHHHHH
Confidence            346899999998887          4556889999999999854  899999999999996   4454 47999999987


Q ss_pred             Hc---CCHHHHHHHHHcCCCCCCcCCCCChHHHHHHH--cCcHHHHHHHHhcCCCcccccccccCcHHHH-HHHcCCHHH
Q psy5490          71 CG---GHVDLALLLIERGANIEEVNDEGYTPLMEAAR--EGHEEMVCVLLQKGAKINAHTEETQETALTL-ACCGGFLDV  144 (352)
Q Consensus        71 ~~---g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~-A~~~g~~~~  144 (352)
                      ..   ++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|+++|++++. .+..|.||||. |+..++.++
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~-~d~~g~t~Lh~~a~~~~~~~i  174 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN-KDFDNNNILYSYILFHSDKKI  174 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc-ccCCCCcHHHHHHHhcCCHHH
Confidence            64   57999999999999999999999999999986  4689999999999999998 47789999995 567889999


Q ss_pred             HHHHHHcCCCCCC---CCCCHHHHHHHcC
Q psy5490         145 ADFLLKNGANIEL---GASTPLMEAAQEG  170 (352)
Q Consensus       145 v~~Ll~~g~~~~~---~g~t~L~~A~~~~  170 (352)
                      +++|+++|++++.   .|+|||++|+.++
T Consensus       175 v~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        175 FDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            9999999999865   7899999998754

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.5e-27  Score=240.38  Aligned_cols=196  Identities=29%  Similarity=0.287  Sum_probs=150.2

Q ss_pred             CCCCCccHHHHHHcCCC-------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC---------------
Q psy5490           2 PTDSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE---------------   53 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~-------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---------------   53 (352)
                      +|.+|+||||+|+..|+             ++..+.+|.||||+|+..|+.+++++|++.+.++.               
T Consensus       174 ~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~  253 (682)
T PHA02876        174 KDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDL  253 (682)
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCH
Confidence            57788899999986554             45557778888888888888777776665554332               


Q ss_pred             -----------CcCCCCCCCChHHHHHHHcCCH-HHHHHHHHcCCCCCCcCCCCChHHHHHHHcC-cHHHHHHHHhcCCC
Q psy5490          54 -----------EVNMPTDSFESPLTLAACGGHV-DLALLLIERGANIEEVNDEGYTPLMEAAREG-HEEMVCVLLQKGAK  120 (352)
Q Consensus        54 -----------~~n~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g-~~~~v~~Ll~~g~~  120 (352)
                                 .++..+..|+||||+|+..|+. +++++|+++|++++.+|.+|+||||+|+..| ..+++++|+..|++
T Consensus       254 ~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad  333 (682)
T PHA02876        254 ETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD  333 (682)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC
Confidence                       1345567788899999888886 5888888888888888888888998888888 58888888888888


Q ss_pred             cccccccccCcHHHHHHHc-CCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHH
Q psy5490         121 INAHTEETQETALTLACCG-GFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEF  196 (352)
Q Consensus       121 ~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~  196 (352)
                      ++. .+..|.||||+|+.. ++.+++++|+++|++++.   .|+||||+|+..|+.+++++|+++|++....+..+.++.
T Consensus       334 in~-~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~L  412 (682)
T PHA02876        334 VNA-ADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTAL  412 (682)
T ss_pred             CCC-cccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchH
Confidence            887 466788888888875 467788888888887754   577888888888888888888888888776665555444


Q ss_pred             HH
Q psy5490         197 KK  198 (352)
Q Consensus       197 ~~  198 (352)
                      ..
T Consensus       413 h~  414 (682)
T PHA02876        413 HF  414 (682)
T ss_pred             HH
Confidence            43

>KOG0509|consensus

Probab=99.96  E-value=2.1e-28  Score=228.47  Aligned_cols=165  Identities=33%  Similarity=0.436  Sum_probs=151.3

Q ss_pred             CCCCCccHHHHHHc-------------CCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHH
Q psy5490           2 PTDSFESPLTLAAC-------------GGHVNMPT-DSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLT   67 (352)
Q Consensus         2 ~~~~g~t~L~lA~~-------------~~~~n~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh   67 (352)
                      +|++|-|+||.|+.             |+++|... .-+.||||||+++|++.+|++|+++|+|+   +..|.+|.++||
T Consensus        74 ~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdp---t~~D~~G~~~lH  150 (600)
T KOG0509|consen   74 PDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADP---TLKDKQGLTPLH  150 (600)
T ss_pred             CCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCC---ceecCCCCcHHH
Confidence            57889999999994             67788887 56789999999999999999999999996   556799999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHH
Q psy5490          68 LAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF  147 (352)
Q Consensus        68 ~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~  147 (352)
                      +|+..|+.-+|-+|+-+|+|+|.+|.+|+||||+|+.+|+...+..|++.|+.+...++..|.||||+|+..|+.+++.+
T Consensus       151 la~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~L  230 (600)
T KOG0509|consen  151 LAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKL  230 (600)
T ss_pred             HHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEeh
Confidence            99999999999999999999999999999999999999998889999999999999877999999999999999999997


Q ss_pred             HHHcCCCCCC---CCCCHHHHHHHc
Q psy5490         148 LLKNGANIEL---GASTPLMEAAQE  169 (352)
Q Consensus       148 Ll~~g~~~~~---~g~t~L~~A~~~  169 (352)
                      |++.|++.+.   +|.||+++|.+.
T Consensus       231 l~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  231 LLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             hhhcCCcccccccCCCCHHHHHHHh
Confidence            7777777644   789999999877

>KOG0508|consensus

Probab=99.95  E-value=2.2e-28  Score=219.82  Aligned_cols=176  Identities=31%  Similarity=0.488  Sum_probs=156.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCC-----cCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Q psy5490          23 TDSFESPLTLAACGGHVDLALLLIE-RGANIEE-----VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY   96 (352)
Q Consensus        23 d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~-----~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~   96 (352)
                      +.+|.|||.+||++||.++|++|++ .+++++.     ++....+|-+||..|+..||+++|+.|+++|+++|.......
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNS  118 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNS  118 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCC
Confidence            5678899999999999999999999 4666543     223345688999999999999999999999999999888888


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHH
Q psy5490          97 TPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLE  173 (352)
Q Consensus        97 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~  173 (352)
                      |||-.||.-|+.++|++|+++|+|++. .+..|.|.||+||..|+.+|+++|++.|+|+|.   .|+|+||.|++.|++|
T Consensus       119 tPLraACfDG~leivKyLvE~gad~~I-anrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vd  197 (615)
T KOG0508|consen  119 TPLRAACFDGHLEIVKYLVEHGADPEI-ANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVD  197 (615)
T ss_pred             ccHHHHHhcchhHHHHHHHHcCCCCcc-cccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHH
Confidence            999999999999999999999999998 688999999999999999999999999999976   7999999999999999


Q ss_pred             HHHHHHHcCCCccccccccHHHHHHHh
Q psy5490         174 LVRYLLDSGAQEMQTKHIDILEFKKRK  200 (352)
Q Consensus       174 ~v~~Ll~~ga~~~~~~~~~~~~~~~~~  200 (352)
                      ++++|+.+|+......+ +.++.....
T Consensus       198 ivq~Ll~~ga~i~~d~~-GmtPL~~Aa  223 (615)
T KOG0508|consen  198 IVQLLLKHGAKIDVDGH-GMTPLLLAA  223 (615)
T ss_pred             HHHHHHhCCceeeecCC-CCchHHHHh
Confidence            99999999997765544 666655443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.2e-27  Score=218.94  Aligned_cols=174  Identities=20%  Similarity=0.178  Sum_probs=151.4

Q ss_pred             HHHHHHcCCCCC------CCCCCCChHHHHHHH--cCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHH
Q psy5490           9 PLTLAACGGHVN------MPTDSFESPLTLAAC--GGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALL   80 (352)
Q Consensus         9 ~L~lA~~~~~~n------~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~   80 (352)
                      +=.+...|.++|      ..+..++|+||.|+.  .|+.++|++|+++|+|++.     .++.|+||+|+..++.+++++
T Consensus        93 ~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~-----~~~~t~lh~A~~~~~~eIVk~  167 (437)
T PHA02795         93 ISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK-----IECLNAYFRGICKKESSVVEF  167 (437)
T ss_pred             HHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC-----CCCCCHHHHHHHcCcHHHHHH
Confidence            334445677878      567789999999999  9999999999999999643     345899999999999999999


Q ss_pred             HHHcCCCCCCcC------CCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490          81 LIERGANIEEVN------DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN  154 (352)
Q Consensus        81 Ll~~g~~~~~~d------~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  154 (352)
                      |+.+|++.+...      ..|.+++|.|+..++.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++
T Consensus       168 Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~-kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd  246 (437)
T PHA02795        168 ILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQ-LDAGGRTLLYRAIYAGYIDLVSWLLENGAN  246 (437)
T ss_pred             HHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCc-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            999998543222      3478999999999999999999999999998 577899999999999999999999999999


Q ss_pred             CCC---CCCCHHHHHHHcC--------CHHHHHHHHHcCCCcccc
Q psy5490         155 IEL---GASTPLMEAAQEG--------HLELVRYLLDSGAQEMQT  188 (352)
Q Consensus       155 ~~~---~g~t~L~~A~~~~--------~~~~v~~Ll~~ga~~~~~  188 (352)
                      +|.   .|+||||+|+..|        +.+++++|+++|++....
T Consensus       247 IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~  291 (437)
T PHA02795        247 VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCI  291 (437)
T ss_pred             CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCch
Confidence            866   6899999999998        479999999999976643

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.2e-26  Score=229.60  Aligned_cols=179  Identities=18%  Similarity=0.203  Sum_probs=146.5

Q ss_pred             CCCCCccHHHHHHc----------------CCCCCCCCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCC
Q psy5490           2 PTDSFESPLTLAAC----------------GGHVNMPTDSFESPLTLAACGGHVD----LALLLIERGANIEEVNMPTDS   61 (352)
Q Consensus         2 ~~~~g~t~L~lA~~----------------~~~~n~~d~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~n~~~~~   61 (352)
                      .|.+|+|+||+||.                |.+++..+..|+||||+|+..|+++    +++.|++.+.+.   +..+  
T Consensus        28 ~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~---n~~~--  102 (661)
T PHA02917         28 RNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS---NIND--  102 (661)
T ss_pred             cCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC---CCCC--
Confidence            37789999999753                5567777889999999999999854    557888765432   2222  


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHH--HcCcHHHHHHHHhcCCCccccc--cccc--------
Q psy5490          62 FESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAA--REGHEEMVCVLLQKGAKINAHT--EETQ--------  129 (352)
Q Consensus        62 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~--~~~g--------  129 (352)
                      ..+++|+|+..|+.++|++|+++|++++.+|..|+||||+|+  ..|+.+++++|+++|++++...  +..|        
T Consensus       103 ~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        103 FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccc
Confidence            236788899999999999999999999999999999999654  5789999999999999998532  1223        


Q ss_pred             ---CcHHHHHHH-----------cCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCH--HHHHHHHHcCCCcc
Q psy5490         130 ---ETALTLACC-----------GGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHL--ELVRYLLDSGAQEM  186 (352)
Q Consensus       130 ---~t~L~~A~~-----------~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~--~~v~~Ll~~ga~~~  186 (352)
                         .|+||+|+.           .++.+++++|+++|+++|.   .|+||||+|+..|+.  |+|++|++ |++..
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccc
Confidence               599999986           4689999999999999875   788999999999985  89999985 87653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=5.3e-26  Score=232.52  Aligned_cols=164  Identities=24%  Similarity=0.308  Sum_probs=151.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHH
Q psy5490          23 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEA  102 (352)
Q Consensus        23 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A  102 (352)
                      +.++.++|+.||..|+.++++.|+++|+|+   |..|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~---n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A  598 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDP---DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA  598 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            445789999999999999999999999995   66789999999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHH
Q psy5490         103 AREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLL  179 (352)
Q Consensus       103 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll  179 (352)
                      +..|+.+++++|++.++..+.   ..+.++||+|+..|+.+++++|+++|+++|.   .|+||||+|+..|+.+++++|+
T Consensus       599 ~~~g~~~iv~~L~~~~~~~~~---~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll  675 (823)
T PLN03192        599 ISAKHHKIFRILYHFASISDP---HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLI  675 (823)
T ss_pred             HHhCCHHHHHHHHhcCcccCc---ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHH
Confidence            999999999999998877654   3466999999999999999999999999865   7899999999999999999999


Q ss_pred             HcCCCcccccccc
Q psy5490         180 DSGAQEMQTKHID  192 (352)
Q Consensus       180 ~~ga~~~~~~~~~  192 (352)
                      ++|++.+..+..+
T Consensus       676 ~~GAdv~~~~~~g  688 (823)
T PLN03192        676 MNGADVDKANTDD  688 (823)
T ss_pred             HcCCCCCCCCCCC
Confidence            9999998877655

>KOG4177|consensus

Probab=99.94  E-value=2.4e-26  Score=230.94  Aligned_cols=178  Identities=37%  Similarity=0.463  Sum_probs=166.0

Q ss_pred             CCCCccHHHHHHcC--------------CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           3 TDSFESPLTLAACG--------------GHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         3 ~~~g~t~L~lA~~~--------------~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      +..|.|++|+|+..              +++|++...|.||||+|+..|+.++++.|++.++..   +...+.+.++||.
T Consensus       437 ~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~---~~~~~~~l~~lhl  513 (1143)
T KOG4177|consen  437 AKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND---NLDAKKGLTPLHL  513 (1143)
T ss_pred             hhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCcc---Cccchhccchhhh
Confidence            56789999999965              467888999999999999999999999999998663   5556889999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHH
Q psy5490          69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL  148 (352)
Q Consensus        69 A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  148 (352)
                      |...+...+++.++++|++++.++..|+||||.|+.+|+.++|++|+++|++++.+ ++.|+||||.||..|+.+|+++|
T Consensus       514 a~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak-~~~G~TPLH~Aa~~G~~~i~~LL  592 (1143)
T KOG4177|consen  514 AADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAK-DKLGYTPLHQAAQQGHNDIAELL  592 (1143)
T ss_pred             hhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccccc-CCCCCChhhHHHHcChHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999996 58899999999999999999999


Q ss_pred             HHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490         149 LKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQ  184 (352)
Q Consensus       149 l~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~  184 (352)
                      +++|+++|.   +|.|||++|++.|+++++++|+..++.
T Consensus       593 lk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  593 LKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            999999876   789999999999999999999999988

>KOG0510|consensus

Probab=99.94  E-value=5.5e-26  Score=216.40  Aligned_cols=160  Identities=31%  Similarity=0.322  Sum_probs=76.7

Q ss_pred             CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHH-----cCCCCCCcC
Q psy5490          18 HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIE-----RGANIEEVN   92 (352)
Q Consensus        18 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-----~g~~~~~~d   92 (352)
                      |+|..|+.|.||||+||..++.|..+.|++.|+++.   ..|.+|++++|.|++.|..|+++.+++     ++..+|..+
T Consensus       146 dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~---K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~  222 (929)
T KOG0510|consen  146 DVNLEDENGFTPLHLAARKNKVEAKKELINKGADPC---KSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDN  222 (929)
T ss_pred             CccccccCCCchhhHHHhcChHHHHHHHHhcCCCCC---cccCcCCchHHHHHHhcchhhhhhhhccccchhhccccccc
Confidence            344445555555555555555554444555555432   223444555555555555555554444     334444444


Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHhcCCCcccc--------------cccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC-
Q psy5490          93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAH--------------TEETQETALTLACCGGFLDVADFLLKNGANIEL-  157 (352)
Q Consensus        93 ~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-  157 (352)
                      ..|.||||.|+..|+.++++.+|+.|......              .|..|.||||+|++.|+.++++.|+.+|++++. 
T Consensus       223 n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~k  302 (929)
T KOG0510|consen  223 NEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSK  302 (929)
T ss_pred             CCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccccc
Confidence            55555555555555555555555544332111              123345555555555555555555555554432 


Q ss_pred             --CCCCHHHHHHHcCCHHHHHHHHH
Q psy5490         158 --GASTPLMEAAQEGHLELVRYLLD  180 (352)
Q Consensus       158 --~g~t~L~~A~~~~~~~~v~~Ll~  180 (352)
                        ++.+|||.|+++|++++|+-||+
T Consensus       303 n~d~~spLH~AA~yg~~ntv~rLL~  327 (929)
T KOG0510|consen  303 NKDEESPLHFAAIYGRINTVERLLQ  327 (929)
T ss_pred             CCCCCCchHHHHHcccHHHHHHHHh
Confidence              34455555555555555555554

>KOG0502|consensus

Probab=99.94  E-value=1.4e-26  Score=189.32  Aligned_cols=172  Identities=26%  Similarity=0.286  Sum_probs=112.1

Q ss_pred             CCCCccHHHHHHcCCCCCC-------------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHH
Q psy5490           3 TDSFESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLA   69 (352)
Q Consensus         3 ~~~g~t~L~lA~~~~~~n~-------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A   69 (352)
                      +.+|+.+++.++-.+.+++             ++-.+++|+++++...+++.+..|.++.     +|..|+.|.|||.||
T Consensus        93 ~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~-----VN~~De~GfTpLiWA  167 (296)
T KOG0502|consen   93 DPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNK-----VNACDEFGFTPLIWA  167 (296)
T ss_pred             CchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhcc-----ccCccccCchHhHHH
Confidence            3346666666664444332             3445667777777766666666555543     355667777777777


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHH
Q psy5490          70 ACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLL  149 (352)
Q Consensus        70 ~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  149 (352)
                      +.+|++.+|++|++.|+|++...+...++|.+|++.|..+||++|+.++.++|. .|.+|-|||.||++.||.+|++.||
T Consensus       168 aa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNv-yDwNGgTpLlyAvrgnhvkcve~Ll  246 (296)
T KOG0502|consen  168 AAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNV-YDWNGGTPLLYAVRGNHVKCVESLL  246 (296)
T ss_pred             HhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcce-eccCCCceeeeeecCChHHHHHHHH
Confidence            777777777777777777776666666777777777777777777777777776 4566667777777777777777777


Q ss_pred             HcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHc
Q psy5490         150 KNGANIEL---GASTPLMEAAQEGHLELVRYLLDS  181 (352)
Q Consensus       150 ~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~  181 (352)
                      ..|++++.   .|++++.+|+..|+. +|+..++.
T Consensus       247 ~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~  280 (296)
T KOG0502|consen  247 NSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEK  280 (296)
T ss_pred             hcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHH
Confidence            77776644   466677777776665 55555544

>PHA02917 ankyrin-like protein; Provisional

Probab=99.93  E-value=4e-25  Score=218.83  Aligned_cols=185  Identities=14%  Similarity=0.125  Sum_probs=154.3

Q ss_pred             HHHHHcCCCCCCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHH----HHHHHH
Q psy5490          10 LTLAACGGHVNMPTDSFESPLTLAACG---GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVD----LALLLI   82 (352)
Q Consensus        10 L~lA~~~~~~n~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~----~v~~Ll   82 (352)
                      .++.+.++.++..|.+|+||||+|+..   |+.++|++||++|+++   +..+..|+||||+|+..|+.+    ++++|+
T Consensus        16 ~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v---~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll   92 (661)
T PHA02917         16 KQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP---LHKNWRQLTPLEEYTNSRHVKVNKDIAMALL   92 (661)
T ss_pred             HHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc---cccCCCCCCHHHHHHHcCChhHHHHHHHHHH
Confidence            345567777888899999999998665   8899999999999995   567799999999999999854    567888


Q ss_pred             HcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHH--HcCCHHHHHHHHHcCCCCCCC--
Q psy5490          83 ERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLAC--CGGFLDVADFLLKNGANIELG--  158 (352)
Q Consensus        83 ~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~--  158 (352)
                      +.+...+..+  ..+++|+|+.+++.++|++|+++|++++.+ +..|.||||+++  ..|+.+++++|+++|++++..  
T Consensus        93 ~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~-d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~  169 (661)
T PHA02917         93 EATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVK-CENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDE  169 (661)
T ss_pred             hccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCcc-CCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccc
Confidence            8765455433  236788899999999999999999999984 777999999654  578999999999999998631  


Q ss_pred             ----C-----------CCHHHHHHH-----------cCCHHHHHHHHHcCCCccccccccHHHHHHHh
Q psy5490         159 ----A-----------STPLMEAAQ-----------EGHLELVRYLLDSGAQEMQTKHIDILEFKKRK  200 (352)
Q Consensus       159 ----g-----------~t~L~~A~~-----------~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  200 (352)
                          |           .||||+|+.           .++.++|++|+++|++.+..+..+.+++....
T Consensus       170 ~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~  237 (661)
T PHA02917        170 DDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYI  237 (661)
T ss_pred             ccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHH
Confidence                2           499999986           56899999999999999998888877766654

>KOG4177|consensus

Probab=99.93  E-value=2e-25  Score=224.36  Aligned_cols=195  Identities=31%  Similarity=0.393  Sum_probs=169.9

Q ss_pred             CCCCCccHHHHHHcCCCCCC-------------CCCCCChHHHHHHHcC-CHHHHHHHHHcCCCCCCcCCCCCCCChHHH
Q psy5490           2 PTDSFESPLTLAACGGHVNM-------------PTDSFESPLTLAACGG-HVDLALLLIERGANIEEVNMPTDSFESPLT   67 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~~n~-------------~d~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh   67 (352)
                      ++..|.|+||+|+..++.++             .+..|.|+||+|+..| ..++...++..|++++   .....|.|+||
T Consensus       403 ~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n---~~s~~G~T~Lh  479 (1143)
T KOG4177|consen  403 AGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPN---AVSKQGFTPLH  479 (1143)
T ss_pred             CCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcc---hhccccCcchh
Confidence            46678888888886665544             3788899999999998 8888888889999854   44588999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHH
Q psy5490          68 LAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF  147 (352)
Q Consensus        68 ~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~  147 (352)
                      +|+..|+.++++.|++.++.++.-...|.++||+|...+...+++.++++|++++. ....|.||||+|+..|++.+|++
T Consensus       480 laaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~-~~~r~~TpLh~A~~~g~v~~Vkf  558 (1143)
T KOG4177|consen  480 LAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDL-RTGRGYTPLHVAVHYGNVDLVKF  558 (1143)
T ss_pred             hhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceeh-hcccccchHHHHHhcCCchHHHH
Confidence            99999999999999999888888888899999999999999999999999999998 46679999999999999999999


Q ss_pred             HHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHHh
Q psy5490         148 LLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRK  200 (352)
Q Consensus       148 Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  200 (352)
                      |+++|++++.   .|+||||.|+.+|+.+|+++|+++|++++..+....+......
T Consensus       559 LLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~  614 (1143)
T KOG4177|consen  559 LLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAV  614 (1143)
T ss_pred             hhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHH
Confidence            9999999865   6899999999999999999999999999988877776655543

>PHA02730 ankyrin-like protein; Provisional

Probab=99.92  E-value=2.5e-24  Score=208.76  Aligned_cols=178  Identities=16%  Similarity=0.126  Sum_probs=143.4

Q ss_pred             CCCCCccHHHHHHc----------------CCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCcCCCCCCCC
Q psy5490           2 PTDSFESPLTLAAC----------------GGHVNMPTDSFESPLTLAACGG--HVDLALLLIERGANIEEVNMPTDSFE   63 (352)
Q Consensus         2 ~~~~g~t~L~lA~~----------------~~~~n~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~n~~~~~g~   63 (352)
                      .|.+|+||||+|+.                |++++..|..|+||||+|+..+  +.++|++|+++|++.+ .+..+..+.
T Consensus        37 kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~-~~~~~~~~d  115 (672)
T PHA02730         37 IDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNAS-NELTSNIND  115 (672)
T ss_pred             cCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCC-cccccccCC
Confidence            46789999999984                4556777999999999999976  7999999999977642 244556688


Q ss_pred             hHHHHHHH--cCCHHHHHHHHH-cCCCCCCcCC-----CCChHHHHHHHcCcHHHHHHHHhcCCCccc-------ccccc
Q psy5490          64 SPLTLAAC--GGHVDLALLLIE-RGANIEEVND-----EGYTPLMEAAREGHEEMVCVLLQKGAKINA-------HTEET  128 (352)
Q Consensus        64 t~Lh~A~~--~g~~~~v~~Ll~-~g~~~~~~d~-----~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-------~~~~~  128 (352)
                      ++||.++.  .+++++|++|++ .+++++....     .|.++++++...++.|+|++|+++|++++.       .....
T Consensus       116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~  195 (672)
T PHA02730        116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDR  195 (672)
T ss_pred             chHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCc
Confidence            89998888  899999999996 6778776532     789999999999999999999999999952       22333


Q ss_pred             cCcHHHHHH------HcCCHHHHHHHHHcCCCCCC---CCCCHHHH--HHHcCCHHHHHHHHH
Q psy5490         129 QETALTLAC------CGGFLDVADFLLKNGANIEL---GASTPLME--AAQEGHLELVRYLLD  180 (352)
Q Consensus       129 g~t~L~~A~------~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~--A~~~~~~~~v~~Ll~  180 (352)
                      +.|.||+.+      ..++.|++++|+.+|+++|.   .|.||||+  |...|+.|+|++|++
T Consensus       196 c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        196 CKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            446666443      45689999999999999865   68899985  556678999999999

>KOG0502|consensus

Probab=99.92  E-value=9.1e-26  Score=184.60  Aligned_cols=166  Identities=33%  Similarity=0.446  Sum_probs=151.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHH
Q psy5490          23 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEA  102 (352)
Q Consensus        23 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A  102 (352)
                      |.+|+.+++.|+-+|+.+.+..+|.+|+..+++   +..+++|+.+++..-+++.+..|.++  .+|..|..|.|||++|
T Consensus        93 ~p~g~~~~~v~ap~~s~~k~sttltN~~rgnev---s~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWA  167 (296)
T KOG0502|consen   93 DPEGWSALLVAAPCGSVDKVSTTLTNGARGNEV---SLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWA  167 (296)
T ss_pred             CchhhhhhhhcCCCCCcceeeeeecccccCCcc---ccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHH
Confidence            668999999999999999999999999986544   47899999999999999998888776  6788999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHH
Q psy5490         103 AREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLL  179 (352)
Q Consensus       103 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll  179 (352)
                      +.+|++++|+||++.|++++. ......++|.+|++.|..++|++||+++.|+|.   +|.|||.||++.+|.+||+.|+
T Consensus       168 aa~G~i~vV~fLL~~GAdp~~-lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll  246 (296)
T KOG0502|consen  168 AAKGHIPVVQFLLNSGADPDA-LGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLL  246 (296)
T ss_pred             HhcCchHHHHHHHHcCCChhh-hhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHH
Confidence            999999999999999999998 466678999999999999999999999999976   7889999999999999999999


Q ss_pred             HcCCCccccccccHH
Q psy5490         180 DSGAQEMQTKHIDIL  194 (352)
Q Consensus       180 ~~ga~~~~~~~~~~~  194 (352)
                      ..||+....+..+..
T Consensus       247 ~sGAd~t~e~dsGy~  261 (296)
T KOG0502|consen  247 NSGADVTQEDDSGYW  261 (296)
T ss_pred             hcCCCcccccccCCc
Confidence            999999877655543

>KOG0514|consensus

Probab=99.92  E-value=4.8e-25  Score=192.71  Aligned_cols=159  Identities=27%  Similarity=0.390  Sum_probs=140.3

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHc-----CCHHHHHHHHHcCCCCCCcC-
Q psy5490          19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACG-----GHVDLALLLIERGANIEEVN-   92 (352)
Q Consensus        19 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~-----g~~~~v~~Ll~~g~~~~~~d-   92 (352)
                      +|+.|.+|+|+||||+..+++++|+.||+.|.-  .++.+++-|+||+++++..     .+.++|+.|.+.| |+|.+- 
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC--~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAs  337 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVC--DVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKAS  337 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcc--cccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhh
Confidence            578899999999999999999999999998763  3677889999999999854     4678999998775 788765 


Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHc-CCCC---CCCCCCHHHHHHH
Q psy5490          93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN-GANI---ELGASTPLMEAAQ  168 (352)
Q Consensus        93 ~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~---~~~g~t~L~~A~~  168 (352)
                      ..|.|+||+|+..|+.++|+.||.+|+|+|.+ |.+|.|+|+.|+.+||.|++++||.. ++|+   |.+|.|+|.+|..
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacgAdVNiQ-DdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAle  416 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACGADVNIQ-DDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALE  416 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHccCCCccc-cCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHh
Confidence            47999999999999999999999999999995 66799999999999999999999985 4565   5689999999999


Q ss_pred             cCCHHHHHHHHHc
Q psy5490         169 EGHLELVRYLLDS  181 (352)
Q Consensus       169 ~~~~~~v~~Ll~~  181 (352)
                      .||.||.-+|..+
T Consensus       417 agh~eIa~mlYa~  429 (452)
T KOG0514|consen  417 AGHREIAVMLYAH  429 (452)
T ss_pred             cCchHHHHHHHHH
Confidence            9999999888643

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=4.2e-24  Score=198.26  Aligned_cols=180  Identities=17%  Similarity=0.133  Sum_probs=155.2

Q ss_pred             cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcC---CCCCCCChHHHHHHH--cCCHHHHHHHHHcCCCCC
Q psy5490          15 CGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN---MPTDSFESPLTLAAC--GGHVDLALLLIERGANIE   89 (352)
Q Consensus        15 ~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n---~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~g~~~~   89 (352)
                      .|.++|..+.+|     +|+..+..|++++|+.+|++++.+.   ..+..++|+||.++.  .|+.++|++|+++|++++
T Consensus        71 ~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn  145 (437)
T PHA02795         71 HRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIY  145 (437)
T ss_pred             cCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCC
Confidence            456777666666     9999999999999999999965211   466789999999999  899999999999999998


Q ss_pred             CcCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccc-----ccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCC
Q psy5490          90 EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHT-----EETQETALTLACCGGFLDVADFLLKNGANIEL---GAST  161 (352)
Q Consensus        90 ~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-----~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t  161 (352)
                      ..  ++.||||.|+..++.+++++|+++|++.+...     +..+.+++|.|+..++.+++++|+++|+++|.   .|.|
T Consensus       146 ~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~T  223 (437)
T PHA02795        146 KI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRT  223 (437)
T ss_pred             CC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCC
Confidence            74  45899999999999999999999998543322     13477999999999999999999999999876   6899


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHHhh
Q psy5490         162 PLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQ  201 (352)
Q Consensus       162 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~  201 (352)
                      |||+|+..|+.+++++|+++|++.+..+..+.++...+..
T Consensus       224 pLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~  263 (437)
T PHA02795        224 LLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVD  263 (437)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            9999999999999999999999999998888877766543

>KOG0507|consensus

Probab=99.92  E-value=6.3e-25  Score=207.78  Aligned_cols=194  Identities=28%  Similarity=0.303  Sum_probs=171.7

Q ss_pred             CCCCCccHHHHHHcCCCCCC-------------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           2 PTDSFESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~~n~-------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      +|.+|.|+||.||.+|+.++             .|..|.+|||+|++.|+.++++.||.++..   +|.....|.||||.
T Consensus        45 qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~---~na~~~e~~tplhl  121 (854)
T KOG0507|consen   45 QDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI---LNAVNIENETPLHL  121 (854)
T ss_pred             cCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccC---CCcccccCcCccch
Confidence            68899999999999988654             388999999999999999999999999844   56777899999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCc-------ccccccccCcHHHHHHHcCC
Q psy5490          69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI-------NAHTEETQETALTLACCGGF  141 (352)
Q Consensus        69 A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~-------~~~~~~~g~t~L~~A~~~g~  141 (352)
                      |+.+|+.++|.+|+++|+|.-.+|..+.|+|.+|++.|..++|+.|+.....+       +....-.+.++||+|+++|+
T Consensus       122 aaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh  201 (854)
T KOG0507|consen  122 AAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGH  201 (854)
T ss_pred             hhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcch
Confidence            99999999999999999999999999999999999999999999999873222       11233456789999999999


Q ss_pred             HHHHHHHHHcCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHH
Q psy5490         142 LDVADFLLKNGANIEL--GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKK  198 (352)
Q Consensus       142 ~~~v~~Ll~~g~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~  198 (352)
                      .++++.|++.|.++|+  ...|+||.|+..|..++|.+|++.|.+...++....+.+..
T Consensus       202 ~~~~~~ll~ag~din~~t~~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldi  260 (854)
T KOG0507|consen  202 VECMQALLEAGFDINYTTEDGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDI  260 (854)
T ss_pred             HHHHHHHHhcCCCcccccccchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHH
Confidence            9999999999999998  46699999999999999999999999988888777666553

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=3.7e-24  Score=177.56  Aligned_cols=137  Identities=19%  Similarity=0.127  Sum_probs=96.9

Q ss_pred             CCCCCCCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHH---HHHHHHHcCCCCC
Q psy5490          17 GHVNMPTDSFESPLTLAACGGHV----DLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVD---LALLLIERGANIE   89 (352)
Q Consensus        17 ~~~n~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~---~v~~Ll~~g~~~~   89 (352)
                      .+++..+.++.++||.||+.|++    +++++|++.|.+   ++..|..|+||||+|+..|+.+   ++++|+++|++++
T Consensus        11 ~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~---~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin   87 (166)
T PHA02743         11 LGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL---LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN   87 (166)
T ss_pred             hHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh---hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC
Confidence            34445666777778888877777    455566666666   3455677778888887777654   3677777777777


Q ss_pred             CcC-CCCChHHHHHHHcCcHHHHHHHHh-cCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy5490          90 EVN-DEGYTPLMEAAREGHEEMVCVLLQ-KGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL  157 (352)
Q Consensus        90 ~~d-~~G~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  157 (352)
                      .++ ..|+||||+|+..++.+++++|++ .|++++. .+..|.||||+|+..++.+++++|+++|++++.
T Consensus        88 ~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~-~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~  156 (166)
T PHA02743         88 ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGA-INYQHETAYHIAYKMRDRRMMEILRANGAVCDD  156 (166)
T ss_pred             CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            776 467788888877777777777774 6777776 355677777777777777777777777776643

>PHA02792 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.1e-23  Score=202.43  Aligned_cols=195  Identities=14%  Similarity=0.077  Sum_probs=144.2

Q ss_pred             CCCCccHHHHHH--------------cCCCCCCCCCCCChHHHHHHH-cCCHHHHHHHHHcCCCCC--------------
Q psy5490           3 TDSFESPLTLAA--------------CGGHVNMPTDSFESPLTLAAC-GGHVDLALLLIERGANIE--------------   53 (352)
Q Consensus         3 ~~~g~t~L~lA~--------------~~~~~n~~d~~g~t~L~~A~~-~g~~~~v~~Ll~~g~~~~--------------   53 (352)
                      |.+|.+++|+.|              .|+|+|..+..+.++||+|+. .++.|++++|+++|+|.+              
T Consensus        68 n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~  147 (631)
T PHA02792         68 NINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQI  147 (631)
T ss_pred             ccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhc
Confidence            455666665555              467778777778888888865 688888888888887632              


Q ss_pred             -------------------CcCCCCCCCChHHHHHHHcC-------CHHHHHHHHHcCCCCCCcCCCCChHHHHHHH---
Q psy5490          54 -------------------EVNMPTDSFESPLTLAACGG-------HVDLALLLIERGANIEEVNDEGYTPLMEAAR---  104 (352)
Q Consensus        54 -------------------~~n~~~~~g~t~Lh~A~~~g-------~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~---  104 (352)
                                         .+|..|..|.||||+|+..+       +.+++++|+.+|++++.+|..|.||||+|+.   
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~  227 (631)
T PHA02792        148 TRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCD  227 (631)
T ss_pred             ccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHccc
Confidence                               13356667888888888888       7888888888888888888888888877664   


Q ss_pred             --------------------------------------------------------------------------------
Q psy5490         105 --------------------------------------------------------------------------------  104 (352)
Q Consensus       105 --------------------------------------------------------------------------------  104 (352)
                                                                                                      
T Consensus       228 i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q  307 (631)
T PHA02792        228 IKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQ  307 (631)
T ss_pred             chHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHH
Confidence                                                                                            


Q ss_pred             -----------------------------------------cCcHHHHHHHHhcCCCcccccccc--cCcHHHHHHHcCC
Q psy5490         105 -----------------------------------------EGHEEMVCVLLQKGAKINAHTEET--QETALTLACCGGF  141 (352)
Q Consensus       105 -----------------------------------------~g~~~~v~~Ll~~g~~~~~~~~~~--g~t~L~~A~~~g~  141 (352)
                                                               .|+.++|++|+++|++++.+ +..  +.||||+|+....
T Consensus       308 ~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~k-D~~g~~~TpLh~A~~n~~  386 (631)
T PHA02792        308 DLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVED-DDNIINIMPLFPTLSIHE  386 (631)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhh-cCCCCChhHHHHHHHhcc
Confidence                                                     35566677777777777664 333  3578887766654


Q ss_pred             H---HHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHH
Q psy5490         142 L---DVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKK  198 (352)
Q Consensus       142 ~---~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~  198 (352)
                      .   +++++|+++|+++|.   .|+||||+|+..++.+++++|+++|++.+..+..+.+....
T Consensus       387 ~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~  449 (631)
T PHA02792        387 SDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGI  449 (631)
T ss_pred             HhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            3   357778888888765   57899999999999999999999999888777766655444

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=1.7e-23  Score=214.16  Aligned_cols=157  Identities=21%  Similarity=0.284  Sum_probs=139.2

Q ss_pred             CCccHHHHHHcCC-------------CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHH
Q psy5490           5 SFESPLTLAACGG-------------HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC   71 (352)
Q Consensus         5 ~g~t~L~lA~~~~-------------~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~   71 (352)
                      .+.++|+.||..|             ++|..|.+|+||||+|+..|+.+++++|+++|+++   +.+|.+|+||||+|+.
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi---n~~d~~G~TpL~~A~~  600 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV---HIRDANGNTALWNAIS  600 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC---CCcCCCCCCHHHHHHH
Confidence            4567888888644             56778999999999999999999999999999994   6678999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHc
Q psy5490          72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN  151 (352)
Q Consensus        72 ~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  151 (352)
                      .|+.+++++|++.+...+  ...|.++||+|+..|+.+++++|+++|++++. .+..|+||||+|+..|+.+++++|+++
T Consensus       601 ~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~-~d~~G~TpLh~A~~~g~~~iv~~Ll~~  677 (823)
T PLN03192        601 AKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDS-EDHQGATALQVAMAEDHVDMVRLLIMN  677 (823)
T ss_pred             hCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence            999999999999877655  34577999999999999999999999999998 577899999999999999999999999


Q ss_pred             CCCCCC---CC-CCHHHHHH
Q psy5490         152 GANIEL---GA-STPLMEAA  167 (352)
Q Consensus       152 g~~~~~---~g-~t~L~~A~  167 (352)
                      |++++.   .| .+++.++.
T Consensus       678 GAdv~~~~~~g~~t~~~l~~  697 (823)
T PLN03192        678 GADVDKANTDDDFSPTELRE  697 (823)
T ss_pred             CCCCCCCCCCCCCCHHHHHH
Confidence            999866   34 67876653

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=1e-23  Score=175.58  Aligned_cols=138  Identities=20%  Similarity=0.144  Sum_probs=80.6

Q ss_pred             HHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc------CCCCCCcCCCCCCCChHHHHHHHcCC----HHHHHH
Q psy5490          11 TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIER------GANIEEVNMPTDSFESPLTLAACGGH----VDLALL   80 (352)
Q Consensus        11 ~lA~~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~------g~~~~~~n~~~~~g~t~Lh~A~~~g~----~~~v~~   80 (352)
                      +.+|....++..|..|.|+||+|+..|+.+++++|+..      |++   ++.+|..|+||||+|+..|+    .+++++
T Consensus         6 ~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~---in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~   82 (169)
T PHA02741          6 FMTCLEEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA---LNATDDAGQMCIHIAAEKHEAQLAAEIIDH   82 (169)
T ss_pred             HHHHHHHHhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh---hhccCCCCCcHHHHHHHcCChHHHHHHHHH
Confidence            34444445555566666666666666666666665432      233   34455566666666666665    356666


Q ss_pred             HHHcCCCCCCcCC-CCChHHHHHHHcCcHHHHHHHHh-cCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcC
Q psy5490          81 LIERGANIEEVND-EGYTPLMEAAREGHEEMVCVLLQ-KGAKINAHTEETQETALTLACCGGFLDVADFLLKNG  152 (352)
Q Consensus        81 Ll~~g~~~~~~d~-~G~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  152 (352)
                      |+++|++++.++. .|+||||+|+..++.+++++|++ .|++++. .+..|+||||+|+..++.+++++|++.+
T Consensus        83 Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~-~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         83 LIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHF-CNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             HHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc-CCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            6666666666653 56666666666666666666665 3666655 3445556666666666666666555554

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.91  E-value=2.6e-23  Score=185.86  Aligned_cols=158  Identities=21%  Similarity=0.136  Sum_probs=134.7

Q ss_pred             CCCCCCCC-hHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCC
Q psy5490          20 NMPTDSFE-SPLTLAACGGHVDLALLLIERGANIEEVNM-PTDSFESPLTLAACGGHVDLALLLIERGANIEEVN-DEGY   96 (352)
Q Consensus        20 n~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d-~~G~   96 (352)
                      ...|..|. ++||.|+..|+.+++++|+++|++++..+. .+..|.||||+|+..++.+++++|+++|++++.++ ..|.
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            34466665 567777788999999999999999754321 24689999999999999999999999999999864 5899


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCHHHHHHHcCCHHHHH
Q psy5490          97 TPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVR  176 (352)
Q Consensus        97 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~g~t~L~~A~~~~~~~~v~  176 (352)
                      ||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..++.+++.++.  |..++..+.+|++++   ++.|+++
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~-kd~~G~TpL~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~n~ei~~  179 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINI-QTNDMVTPIELALMICNNFLAFMIC--DNEISNFYKHPKKIL---INFDILK  179 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHhCChhHHHHhc--CCcccccccChhhhh---ccHHHHH
Confidence            999999999999999999999999998 4677999999999999998886665  555666677888875   4789999


Q ss_pred             HHHHcCC
Q psy5490         177 YLLDSGA  183 (352)
Q Consensus       177 ~Ll~~ga  183 (352)
                      +|+.+++
T Consensus       180 ~Lish~v  186 (300)
T PHA02884        180 ILVSHFI  186 (300)
T ss_pred             HHHHHHH
Confidence            9999987

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=1.3e-23  Score=174.27  Aligned_cols=134  Identities=19%  Similarity=0.198  Sum_probs=118.7

Q ss_pred             CCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHH---HHHHHHhcCCCcccccccccC
Q psy5490          58 PTDSFESPLTLAACGGHV----DLALLLIERGANIEEVNDEGYTPLMEAAREGHEE---MVCVLLQKGAKINAHTEETQE  130 (352)
Q Consensus        58 ~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~---~v~~Ll~~g~~~~~~~~~~g~  130 (352)
                      .+.++.++||.||+.|++    +++++|++.|.+++.+|..|+||||+|+..|+.+   ++++|+++|++++.+....|.
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~   95 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGN   95 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            446778999999999998    6777888999999999999999999999998765   489999999999985445799


Q ss_pred             cHHHHHHHcCCHHHHHHHHH-cCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccc
Q psy5490         131 TALTLACCGGFLDVADFLLK-NGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHI  191 (352)
Q Consensus       131 t~L~~A~~~g~~~~v~~Ll~-~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  191 (352)
                      ||||+|+..|+.+++++|+. .|++++.   .|+||||+|+..++.+++++|+++|++....+..
T Consensus        96 TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  160 (166)
T PHA02743         96 TLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSI  160 (166)
T ss_pred             cHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccC
Confidence            99999999999999999995 7998755   6899999999999999999999999988765544

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=4.2e-23  Score=200.29  Aligned_cols=177  Identities=13%  Similarity=0.082  Sum_probs=149.9

Q ss_pred             CCC-CCCCCCChHHHHHHHcC---CHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCC--CCC
Q psy5490          18 HVN-MPTDSFESPLTLAACGG---HVDLALLLIERGANIEEVNMPTDSFESPLTLAACGG--HVDLALLLIERGA--NIE   89 (352)
Q Consensus        18 ~~n-~~d~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~--~~~   89 (352)
                      ++| ..|.+|+||||+|+..|   +.++|++||++|+++   +.+|..|+||||+|+..+  +.++|++|+++|+  +++
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi---n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~  108 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER---LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNE  108 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC---cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcc
Confidence            666 77889999999999987   599999999999995   667899999999999966  7999999999965  447


Q ss_pred             CcCCCCChHHHHHHH--cCcHHHHHHHHh-cCCCcccccc----cccCcHHHHHHHcCCHHHHHHHHHcCCCCC------
Q psy5490          90 EVNDEGYTPLMEAAR--EGHEEMVCVLLQ-KGAKINAHTE----ETQETALTLACCGGFLDVADFLLKNGANIE------  156 (352)
Q Consensus        90 ~~d~~G~t~L~~A~~--~g~~~~v~~Ll~-~g~~~~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------  156 (352)
                      ..+..+.++||.++.  .++.++|++|+. .+++++...+    ..|.+++++++..++.++|++|+++|++++      
T Consensus       109 ~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~  188 (672)
T PHA02730        109 LTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRS  188 (672)
T ss_pred             cccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccccc
Confidence            778778899999888  899999999997 6778776422    368899999999999999999999999984      


Q ss_pred             --CC--C-CCHHHHH------HHcCCHHHHHHHHHcCCCccccccccHHHHH
Q psy5490         157 --LG--A-STPLMEA------AQEGHLELVRYLLDSGAQEMQTKHIDILEFK  197 (352)
Q Consensus       157 --~~--g-~t~L~~A------~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~  197 (352)
                        .+  . .+.||++      ...++.|++++|+.+||+.+..+..+.+++.
T Consensus       189 ~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh  240 (672)
T PHA02730        189 CMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQ  240 (672)
T ss_pred             ccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence              11  1 2455533      3557899999999999999999888888875

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=6.3e-23  Score=170.84  Aligned_cols=128  Identities=23%  Similarity=0.266  Sum_probs=114.8

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCChHHHHHHHcCc----HHHHHHHHhcCCCcccccc
Q psy5490          57 MPTDSFESPLTLAACGGHVDLALLLIE------RGANIEEVNDEGYTPLMEAAREGH----EEMVCVLLQKGAKINAHTE  126 (352)
Q Consensus        57 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~------~g~~~~~~d~~G~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~  126 (352)
                      .++..|.|+||+|+..|+.++|++|+.      .|++++.+|..|+||||+|+..|+    .+++++|+++|++++.+..
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            355789999999999999999999864      368899999999999999999998    5899999999999998543


Q ss_pred             cccCcHHHHHHHcCCHHHHHHHHH-cCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490         127 ETQETALTLACCGGFLDVADFLLK-NGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQ  184 (352)
Q Consensus       127 ~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~  184 (352)
                      ..|+||||+|+..++.+++++|++ .|++++.   .|+|||++|+..++.+++++|+++++.
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            479999999999999999999998 5888754   789999999999999999999988754

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=1.8e-23  Score=212.53  Aligned_cols=181  Identities=23%  Similarity=0.211  Sum_probs=137.8

Q ss_pred             CCCCCccHHH-HHHcCCCCCCC---------CCCCChHHHHHHHc---CCHHHHHHHHHcCCCC------CC-cCCCCCC
Q psy5490           2 PTDSFESPLT-LAACGGHVNMP---------TDSFESPLTLAACG---GHVDLALLLIERGANI------EE-VNMPTDS   61 (352)
Q Consensus         2 ~~~~g~t~L~-lA~~~~~~n~~---------d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~------~~-~n~~~~~   61 (352)
                      .|..|+|||| .|+.+++..++         +..|+||||.|+..   +..++++.+++.+.+.      +. ....+..
T Consensus        48 ~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~  127 (743)
T TIGR00870        48 PDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTP  127 (743)
T ss_pred             cCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCC
Confidence            4677999999 77776664333         67788999988872   2223444444443220      00 1112356


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcC--------------CCCChHHHHHHHcCcHHHHHHHHhcCCCccccccc
Q psy5490          62 FESPLTLAACGGHVDLALLLIERGANIEEVN--------------DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEE  127 (352)
Q Consensus        62 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d--------------~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~  127 (352)
                      |.||||+|+..|+.++|++|+++|++++.++              ..|.||||+|+..|+.+++++|+++|++++. .+.
T Consensus       128 G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~-~d~  206 (743)
T TIGR00870       128 GITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILT-ADS  206 (743)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhh-Hhh
Confidence            8999999999999999999999999998653              3589999999999999999999999999998 477


Q ss_pred             ccCcHHHHHHHcC---------CHHHHHHHHHcCCCC----------CCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q psy5490         128 TQETALTLACCGG---------FLDVADFLLKNGANI----------ELGASTPLMEAAQEGHLELVRYLLDSGA  183 (352)
Q Consensus       128 ~g~t~L~~A~~~g---------~~~~v~~Ll~~g~~~----------~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  183 (352)
                      .|+|+||+|+..+         ...+.+++++.+++.          |.+|.||||+|+..|+.+++++|++.++
T Consensus       207 ~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~  281 (743)
T TIGR00870       207 LGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKY  281 (743)
T ss_pred             hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHH
Confidence            7999999999987         234667777766542          5688999999999999999999998643

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.89  E-value=3.8e-23  Score=169.67  Aligned_cols=135  Identities=21%  Similarity=0.174  Sum_probs=98.8

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC--CC--CCcCCCCCCCChHHHHHHHcCCH---HHHHHHHHcCCCCCCc
Q psy5490          19 VNMPTDSFESPLTLAACGGHVDLALLLIERGA--NI--EEVNMPTDSFESPLTLAACGGHV---DLALLLIERGANIEEV   91 (352)
Q Consensus        19 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~--~~~n~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~g~~~~~~   91 (352)
                      .+..|.+|.||||+|++.|+..  ++++..+.  +.  ..++..|.+|+|+||+|+..|+.   +++++|+++|++++.+
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~   87 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK   87 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence            3455778888888888888742  33222221  11  11233467788888888888876   4677888888888888


Q ss_pred             CC-CCChHHHHHHHcCcHHHHHHHHhc-CCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy5490          92 ND-EGYTPLMEAAREGHEEMVCVLLQK-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE  156 (352)
Q Consensus        92 d~-~G~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  156 (352)
                      +. .|+||||+|+..|+.+++++|+.+ |++++. .+..|.||||+|+..|+.+++++|+++|++++
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~-~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEI-LNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcc-ccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            74 788888888888888888888874 888877 46678888888888888888888888887765

>KOG0505|consensus

Probab=99.89  E-value=4.2e-23  Score=189.27  Aligned_cols=175  Identities=29%  Similarity=0.402  Sum_probs=146.2

Q ss_pred             cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Q psy5490          15 CGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDE   94 (352)
Q Consensus        15 ~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~   94 (352)
                      .++++|..+.+|.|+||.+|...+.+||++|+++|++   +|..|..||||||.|+..|++.++++|+.+|+++-.++.+
T Consensus        62 ~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~---Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsd  138 (527)
T KOG0505|consen   62 RGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGAN---VNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSD  138 (527)
T ss_pred             cCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCC---ccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCC
Confidence            4567788899999999999999999999999999999   5778899999999999999999999999999999888888


Q ss_pred             CChHHHHHHH-------------cC-cH------------HHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHH
Q psy5490          95 GYTPLMEAAR-------------EG-HE------------EMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL  148 (352)
Q Consensus        95 G~t~L~~A~~-------------~g-~~------------~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  148 (352)
                      |..|+.++..             .| .+            +=+...+..|...+..... |-|+||+|+.+|..+++++|
T Consensus       139 g~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~r-G~T~lHvAaa~Gy~e~~~lL  217 (527)
T KOG0505|consen  139 GNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHAR-GATALHVAAANGYTEVAALL  217 (527)
T ss_pred             CCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccc-cchHHHHHHhhhHHHHHHHH
Confidence            8776654321             11 01            1122333478888875444 89999999999999999999


Q ss_pred             HHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccH
Q psy5490         149 LKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDI  193 (352)
Q Consensus       149 l~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~  193 (352)
                      +++|.++++   +||||||.|+.+|+.+++++|+++|++.....+.+.
T Consensus       218 l~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~  265 (527)
T KOG0505|consen  218 LQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGE  265 (527)
T ss_pred             HHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCC
Confidence            999998754   899999999999999999999999998776654443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=1.7e-22  Score=165.77  Aligned_cols=129  Identities=25%  Similarity=0.269  Sum_probs=108.5

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-------CCCCcCCCCChHHHHHHHcCcH---HHHHHHHhcCCCccccc
Q psy5490          56 NMPTDSFESPLTLAACGGHVDLALLLIERGA-------NIEEVNDEGYTPLMEAAREGHE---EMVCVLLQKGAKINAHT  125 (352)
Q Consensus        56 n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-------~~~~~d~~G~t~L~~A~~~g~~---~~v~~Ll~~g~~~~~~~  125 (352)
                      +..|..|+||||+|++.|+.  +++|+..+.       .++.+|.+|+||||+|+..|+.   +++++|+++|++++.+.
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~   88 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE   88 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccC
Confidence            45678899999999999984  344433322       2345688999999999999986   57899999999999864


Q ss_pred             ccccCcHHHHHHHcCCHHHHHHHHH-cCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q psy5490         126 EETQETALTLACCGGFLDVADFLLK-NGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEM  186 (352)
Q Consensus       126 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  186 (352)
                      +..|+||||+|+..|+.+++++|+. .|++++.   .|+||||+|+..|+.+++++|+++|++..
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            4579999999999999999999998 4888754   68999999999999999999999998764

>KOG0512|consensus

Probab=99.87  E-value=3.5e-21  Score=152.20  Aligned_cols=140  Identities=30%  Similarity=0.295  Sum_probs=121.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCc
Q psy5490          28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGH  107 (352)
Q Consensus        28 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~  107 (352)
                      -.+.+|+..+.+..|+.||+..++.  +|.+|.+|+||||-|+++|+++||+.|+..|++.+.+...||||||-||..++
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~--vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANH--VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcccc--ccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc
Confidence            4578999999999999999987764  89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHH-HHHHHHH-cCCCC---CCCCCCHHHHHHHcC
Q psy5490         108 EEMVCVLLQKGAKINAHTEETQETALTLACCGGFLD-VADFLLK-NGANI---ELGASTPLMEAAQEG  170 (352)
Q Consensus       108 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~-~v~~Ll~-~g~~~---~~~g~t~L~~A~~~~  170 (352)
                      .+|+.+||++|+|+|+. .....||||+||...+.. .+++|+. .+.+.   +..+.||+++|-+.+
T Consensus       143 ~~va~~LLqhgaDVnA~-t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVNAQ-TKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             hhHHHHHHhccCccccc-ccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            99999999999999995 455789999999887654 4566654 34443   335779999997654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.86  E-value=1.2e-20  Score=181.62  Aligned_cols=124  Identities=14%  Similarity=0.124  Sum_probs=107.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC--ChHHHHHHHcCcH---HHHHHHHhcCCCcccccccccCcHHHHH
Q psy5490          62 FESPLTLAACGGHVDLALLLIERGANIEEVNDEG--YTPLMEAAREGHE---EMVCVLLQKGAKINAHTEETQETALTLA  136 (352)
Q Consensus        62 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G--~t~L~~A~~~g~~---~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  136 (352)
                      ....++.|+..|+.++|++|+++|++++.+|..|  .||||+|+.....   +++++|+++|++++. .+..|+||||+|
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~-kD~~G~TPLh~A  417 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINK-IDKHGRSILYYC  417 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcccc-ccccCcchHHHH
Confidence            4667899999999999999999999999998875  5999998876654   468999999999998 577899999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHH----------cCCHHHHHHHHHcCCCcc
Q psy5490         137 CCGGFLDVADFLLKNGANIEL---GASTPLMEAAQ----------EGHLELVRYLLDSGAQEM  186 (352)
Q Consensus       137 ~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~----------~~~~~~v~~Ll~~ga~~~  186 (352)
                      +..++.+++++|+++|++++.   .|.|||++|+.          +...+++++|+++|.+..
T Consensus       418 a~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        418 IESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            999999999999999999865   68899999976          233678999999997654

>KOG0514|consensus

Probab=99.86  E-value=5.5e-22  Score=173.64  Aligned_cols=145  Identities=28%  Similarity=0.380  Sum_probs=128.3

Q ss_pred             CCCCCccHHHHHHcCCCCCC--------------CCCCCChHHHHHHH-----cCCHHHHHHHHHcCCCCCCcCCC-CCC
Q psy5490           2 PTDSFESPLTLAACGGHVNM--------------PTDSFESPLTLAAC-----GGHVDLALLLIERGANIEEVNMP-TDS   61 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~~n~--------------~d~~g~t~L~~A~~-----~g~~~~v~~Ll~~g~~~~~~n~~-~~~   61 (352)
                      -|.+|+|+||+++.++|..+              .+.-|+||+|+|+.     ..+.++|+.|+..| |+   |.+ ...
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nV---NaKAsQ~  339 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DV---NAKASQH  339 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Cc---chhhhhh
Confidence            47899999999998887544              47789999999996     36789999999886 43   432 357


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhc-CCCcccccccccCcHHHHHHHcC
Q psy5490          62 FESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQK-GAKINAHTEETQETALTLACCGG  140 (352)
Q Consensus        62 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g  140 (352)
                      |+|+|++|+.+|+.+||+.||..|+|+|.+|.+|.|+||.||..||.||+++||.. ++++.. .|.+|.|+|.+|-..|
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sL-tD~DgSTAl~IAleag  418 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISL-TDVDGSTALSIALEAG  418 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccccee-ecCCCchhhhhHHhcC
Confidence            99999999999999999999999999999999999999999999999999999987 777777 7888999999999999


Q ss_pred             CHHHHHHHHHc
Q psy5490         141 FLDVADFLLKN  151 (352)
Q Consensus       141 ~~~~v~~Ll~~  151 (352)
                      +.||.-+|..+
T Consensus       419 h~eIa~mlYa~  429 (452)
T KOG0514|consen  419 HREIAVMLYAH  429 (452)
T ss_pred             chHHHHHHHHH
Confidence            99998888764

>KOG0507|consensus

Probab=99.86  E-value=6.7e-22  Score=187.42  Aligned_cols=167  Identities=31%  Similarity=0.352  Sum_probs=150.0

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChH
Q psy5490          19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTP   98 (352)
Q Consensus        19 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~   98 (352)
                      .|..|.+|.|+||.|+.+|+.+++++|+++.+-+   +..|..|.+|||+|+..|+.++|+.|+.++..+|..+..|.||
T Consensus        42 ~n~qd~~gfTalhha~Lng~~~is~llle~ea~l---dl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tp  118 (854)
T KOG0507|consen   42 HNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL---DLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETP  118 (854)
T ss_pred             ccccCccchhHHHHHHhcCchHHHHHHhcchhhh---hhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCc
Confidence            4556899999999999999999999999987764   5556889999999999999999999999998899999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCC-----------CCCCCCHHHHHH
Q psy5490          99 LMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI-----------ELGASTPLMEAA  167 (352)
Q Consensus        99 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------~~~g~t~L~~A~  167 (352)
                      ||.|++.|+.+++.+||.+|++.-. .+..+.|+|.+|++.|..++++.|+.....+           ...+-++||+|+
T Consensus       119 lhlaaqhgh~dvv~~Ll~~~adp~i-~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaa  197 (854)
T KOG0507|consen  119 LHLAAQHGHLEVVFYLLKKNADPFI-RNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAA  197 (854)
T ss_pred             cchhhhhcchHHHHHHHhcCCCccc-cCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhh
Confidence            9999999999999999999999988 5777899999999999999999999874332           224568999999


Q ss_pred             HcCCHHHHHHHHHcCCCccccc
Q psy5490         168 QEGHLELVRYLLDSGAQEMQTK  189 (352)
Q Consensus       168 ~~~~~~~v~~Ll~~ga~~~~~~  189 (352)
                      ++||.++++.|++.|.+.+...
T Consensus       198 kngh~~~~~~ll~ag~din~~t  219 (854)
T KOG0507|consen  198 KNGHVECMQALLEAGFDINYTT  219 (854)
T ss_pred             hcchHHHHHHHHhcCCCccccc
Confidence            9999999999999999877543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=8.6e-21  Score=169.67  Aligned_cols=125  Identities=22%  Similarity=0.228  Sum_probs=110.2

Q ss_pred             CCCCCCh-HHHHHHHcCCHHHHHHHHHcCCCCCCcC----CCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcH
Q psy5490          58 PTDSFES-PLTLAACGGHVDLALLLIERGANIEEVN----DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETA  132 (352)
Q Consensus        58 ~~~~g~t-~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d----~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~  132 (352)
                      +|..|++ +||+|+..|+.+++++|+++|++++.++    ..|.||||+|+..++.+++++|+++|++++.+.+..|.||
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp  107 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP  107 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence            3455555 5777788899999999999999999874    5899999999999999999999999999998555679999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcC
Q psy5490         133 LTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSG  182 (352)
Q Consensus       133 L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g  182 (352)
                      ||+|+..|+.+++++|+++|++++.   .|+||||+|++.++.+++.++...+
T Consensus       108 Lh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~  160 (300)
T PHA02884        108 LYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNE  160 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc
Confidence            9999999999999999999999865   6899999999999999987775443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.83  E-value=6e-20  Score=186.87  Aligned_cols=168  Identities=24%  Similarity=0.196  Sum_probs=130.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCCChHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHH
Q psy5490          25 SFESPLTLAACGGHVDLALLLIER--GANIEEVNMPTDSFESPLT-LAACGGHVDLALLLIERGANIEEVNDEGYTPLME  101 (352)
Q Consensus        25 ~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~n~~~~~g~t~Lh-~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~  101 (352)
                      .++..|+.||..|+.+.++.+++.  +.+   +|..|..|+|||| .|+..++.+++++|+++|+    .+..|.|+||.
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~---in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~   88 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLN---INCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHA   88 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccC---CCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHH
Confidence            567889999999999999999988  666   4667788999999 8888889999999998887    56789999999


Q ss_pred             HHHcC---cHHHHHHHHhcCCC------cc---cccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC------------
Q psy5490         102 AAREG---HEEMVCVLLQKGAK------IN---AHTEETQETALTLACCGGFLDVADFLLKNGANIEL------------  157 (352)
Q Consensus       102 A~~~g---~~~~v~~Ll~~g~~------~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------  157 (352)
                      |+..+   ..+++.++...+.+      ++   ......|.||||+|+..|+.+++++|+++|++++.            
T Consensus        89 A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~  168 (743)
T TIGR00870        89 ISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQG  168 (743)
T ss_pred             HHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCC
Confidence            88732   23444555544432      11   11123588999999999999999999999998763            


Q ss_pred             -----CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHH
Q psy5490         158 -----GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKR  199 (352)
Q Consensus       158 -----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~  199 (352)
                           .|.+|||+|+..|+.+++++|+++|++.+..+..+.+.....
T Consensus       169 ~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A  215 (743)
T TIGR00870       169 VDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLL  215 (743)
T ss_pred             CCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHH
Confidence                 367899999999999999999999988887777666655433

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505|consensus

Probab=99.82  E-value=2.2e-20  Score=171.45  Aligned_cols=163  Identities=31%  Similarity=0.375  Sum_probs=135.1

Q ss_pred             CCCCCccHHHHHH-------------cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           2 PTDSFESPLTLAA-------------CGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         2 ~~~~g~t~L~lA~-------------~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      .|.+|.|+||-+|             .+.++|..|.+||||||.|+.+|++.++++|+.+|+++-.+|   .+|..|+.+
T Consensus        69 ~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avN---sdg~~P~dl  145 (527)
T KOG0505|consen   69 CNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVN---SDGNMPYDL  145 (527)
T ss_pred             cCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhcc---CCCCCcccc
Confidence            4789999999999             478899999999999999999999999999999999976555   333333322


Q ss_pred             H------------HH-cC-CH-------------HHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCc
Q psy5490          69 A------------AC-GG-HV-------------DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI  121 (352)
Q Consensus        69 A------------~~-~g-~~-------------~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~  121 (352)
                      +            +. .| ++             ++-+|| ..|.+.+..+..|-|+||.|+.+|..+++++|+++|.++
T Consensus       146 ~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l-~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~  224 (527)
T KOG0505|consen  146 AEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWL-NAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSV  224 (527)
T ss_pred             ccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHH-hccccccccccccchHHHHHHhhhHHHHHHHHHHhccCc
Confidence            2            11 11 11             122333 378888888888999999999999999999999999999


Q ss_pred             ccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHc
Q psy5490         122 NAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQE  169 (352)
Q Consensus       122 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~  169 (352)
                      +. .|..|++|||.|+..|..+++++|+++|+++|.   .|.+||.+|...
T Consensus       225 ~~-~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  225 NI-KDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             cc-ccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence            99 578899999999999999999999999999876   789999988753

>KOG0195|consensus

Probab=99.82  E-value=3.8e-20  Score=157.61  Aligned_cols=136  Identities=32%  Similarity=0.389  Sum_probs=115.5

Q ss_pred             CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Q psy5490          17 GHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY   96 (352)
Q Consensus        17 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~   96 (352)
                      .|+|.-|..|.+||||||+.|+..+++.||..|+.++..|..   ..||||+|+.+|+.++|+.|+++.+|+|..+..|+
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmg---ddtplhlaaahghrdivqkll~~kadvnavnehgn  101 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMG---DDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGN  101 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCC---CCcchhhhhhcccHHHHHHHHHHhcccchhhccCC
Confidence            356777899999999999999999999999999997666644   46999999999999999999999999999999999


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy5490          97 TPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE  156 (352)
Q Consensus        97 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  156 (352)
                      |||||||..|+..+++-|+.+|+-++. .+..|.|||..|.-.-...+.++--++|.+++
T Consensus       102 tplhyacfwgydqiaedli~~ga~v~i-cnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  102 TPLHYACFWGYDQIAEDLISCGAAVNI-CNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             CchhhhhhhcHHHHHHHHHhccceeee-cccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999998 68889999998864433334444445666554

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.82  E-value=1.7e-19  Score=133.64  Aligned_cols=88  Identities=36%  Similarity=0.581  Sum_probs=75.9

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHH
Q psy5490          30 LTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEE  109 (352)
Q Consensus        30 L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~  109 (352)
                      ||+||+.|+++++++|++.+.+++.       |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence            7899999999999999998877422       788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcccc
Q psy5490         110 MVCVLLQKGAKINAH  124 (352)
Q Consensus       110 ~v~~Ll~~g~~~~~~  124 (352)
                      ++++|+++|++++.+
T Consensus        74 ~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   74 IVKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHHHTTT-TTSS
T ss_pred             HHHHHHHcCCCCCCc
Confidence            999999999988763

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0512|consensus

Probab=99.81  E-value=2.4e-19  Score=141.88  Aligned_cols=140  Identities=29%  Similarity=0.356  Sum_probs=119.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCH
Q psy5490          64 SPLTLAACGGHVDLALLLIERGAN-IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFL  142 (352)
Q Consensus        64 t~Lh~A~~~g~~~~v~~Ll~~g~~-~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~  142 (352)
                      --+.+|+..+.+..|+.|++..++ +|.+|.+|+||||-|+.+|+.+||+.|+..|++++.++ ..|+||||-||..++.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T-~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKT-NEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCccccc-ccCccchhhhhcccch
Confidence            347799999999999999987664 79999999999999999999999999999999999965 4699999999999999


Q ss_pred             HHHHHHHHcCCCCCC---CCCCHHHHHHHcCCH-HHHHHHH-HcCCCccccccccHHHHHHHhhHHH
Q psy5490         143 DVADFLLKNGANIEL---GASTPLMEAAQEGHL-ELVRYLL-DSGAQEMQTKHIDILEFKKRKQEES  204 (352)
Q Consensus       143 ~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~-~~v~~Ll-~~ga~~~~~~~~~~~~~~~~~~~~~  204 (352)
                      +++.+||++|+|+|.   ...||||+|+...+. ..+++|+ .++.+....+..+.+++...++..+
T Consensus       144 ~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  144 EVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            999999999999987   346999999976554 5666665 4667777778888888877766543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.80  E-value=2.5e-18  Score=134.82  Aligned_cols=124  Identities=40%  Similarity=0.662  Sum_probs=91.3

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHH
Q psy5490          22 PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLME  101 (352)
Q Consensus        22 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~  101 (352)
                      .|.+|.||||+|+..|+.+++++|++.|.+.   +..+..|.++||+|+..++.+++++|++.|.+++..+..|.|++|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~---~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~   79 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV---NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHL   79 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            4566777777777777777788877777763   4555677777887777777777777777777777777777777777


Q ss_pred             HHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHH
Q psy5490         102 AAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLL  149 (352)
Q Consensus       102 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  149 (352)
                      |+..++.+++++|++++.+++. .+..+.|+|++|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKHGADVNA-RDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            7777777777777777766666 3455667777777777777776663

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.79  E-value=1.2e-18  Score=129.10  Aligned_cols=87  Identities=38%  Similarity=0.627  Sum_probs=72.9

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHH
Q psy5490          66 LTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVA  145 (352)
Q Consensus        66 Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v  145 (352)
                      ||+|++.|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++. .+..|+||||+|+..|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINS-QDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccc-cCCCCCCHHHHHHHcCCHHHH
Confidence            7889999999999999998888776    88899999999999999999999998887 456788888888888888888


Q ss_pred             HHHHHcCCCCCC
Q psy5490         146 DFLLKNGANIEL  157 (352)
Q Consensus       146 ~~Ll~~g~~~~~  157 (352)
                      ++|+++|++++.
T Consensus        76 ~~Ll~~g~~~~~   87 (89)
T PF12796_consen   76 KLLLEHGADVNI   87 (89)
T ss_dssp             HHHHHTTT-TTS
T ss_pred             HHHHHcCCCCCC
Confidence            888888888765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676|consensus

Probab=99.79  E-value=8.4e-19  Score=168.48  Aligned_cols=160  Identities=29%  Similarity=0.308  Sum_probs=137.4

Q ss_pred             CCCCCCCCChHHHHHHH---cCCHHHHHHHHHcCCCCCCcC----CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCc
Q psy5490          19 VNMPTDSFESPLTLAAC---GGHVDLALLLIERGANIEEVN----MPTDSFESPLTLAACGGHVDLALLLIERGANIEEV   91 (352)
Q Consensus        19 ~n~~d~~g~t~L~~A~~---~g~~~~v~~Ll~~g~~~~~~n----~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~   91 (352)
                      ++..-..|+|.||.|+.   .++.++++.||+.-..  .+|    .....|.|+||+|+.+.+.++|++|++.|+|++++
T Consensus       136 ~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~--lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR  213 (782)
T KOG3676|consen  136 LNERGATGETLLHKALLNLSDGHNELARVLLEIFPK--LINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHAR  213 (782)
T ss_pred             cccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHH--HhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhH
Confidence            34445678999999998   4556899999986432  222    23467999999999999999999999999998853


Q ss_pred             ---------C--------------CCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHH
Q psy5490          92 ---------N--------------DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL  148 (352)
Q Consensus        92 ---------d--------------~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  148 (352)
                               |              ..|+.||-+||..++.||+++|+++|+|++. .|..|+|.||..+..-..++-.++
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~a-qDS~GNTVLH~lVi~~~~~My~~~  292 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNA-QDSNGNTVLHMLVIHFVTEMYDLA  292 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCc-cccCCChHHHHHHHHHHHHHHHHH
Confidence                     1              2478999999999999999999999999999 588899999999999999999999


Q ss_pred             HHcCCC-----CCCCCCCHHHHHHHcCCHHHHHHHHHc
Q psy5490         149 LKNGAN-----IELGASTPLMEAAQEGHLELVRYLLDS  181 (352)
Q Consensus       149 l~~g~~-----~~~~g~t~L~~A~~~~~~~~v~~Ll~~  181 (352)
                      +++|++     +|.+|-|||.+|++.|+.+|.+.+++.
T Consensus       293 L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  293 LELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999998     366899999999999999999999998

>KOG0195|consensus

Probab=99.78  E-value=1.8e-19  Score=153.53  Aligned_cols=149  Identities=31%  Similarity=0.399  Sum_probs=121.8

Q ss_pred             HHcCCHHHHHHHHHc-CCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHH
Q psy5490          34 ACGGHVDLALLLIER-GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC  112 (352)
Q Consensus        34 ~~~g~~~~v~~Ll~~-g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~  112 (352)
                      |+.|+.-.|++.|+. ..|   +|..|..|.+||||||+.|+..+|+.|+.+|+.+|..+.-.-||||+|+..|+.++|+
T Consensus         8 cregna~qvrlwld~tehd---ln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHD---LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             hhcCCeEEEEEEecCcccc---cccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHH
Confidence            344444344443433 333   6788899999999999999999999999999999999998899999999999999999


Q ss_pred             HHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q psy5490         113 VLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEM  186 (352)
Q Consensus       113 ~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  186 (352)
                      .|++..+|+|+ .++.|+|||||||..|...+.+-|+..|+.+++   .|.|||..|.-.-...+.++--++|-..+
T Consensus        85 kll~~kadvna-vnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen   85 KLLSRKADVNA-VNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             HHHHHhcccch-hhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            99999999999 688999999999999999999999999998754   79999998754433333344444555444

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.77  E-value=1.1e-17  Score=131.25  Aligned_cols=121  Identities=45%  Similarity=0.712  Sum_probs=111.4

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHH
Q psy5490          58 PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLAC  137 (352)
Q Consensus        58 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~  137 (352)
                      .+..|+|+||+|+..++.+++++|++.+.+.+..+..|.++||+|+..++.+++++|++.|+.++. .+..+.+++|+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~-~~~~~~~~l~~a~   81 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA-RDKDGNTPLHLAA   81 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHH
Confidence            347799999999999999999999999999999999999999999999999999999999988887 4577899999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHH
Q psy5490         138 CGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLL  179 (352)
Q Consensus       138 ~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll  179 (352)
                      ..++.+++++|+++|.+++.   .|.+++++|+..++.+++++|+
T Consensus        82 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          82 RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999866543   6789999999999999999984

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369|consensus

Probab=99.77  E-value=1.9e-19  Score=175.92  Aligned_cols=182  Identities=36%  Similarity=0.482  Sum_probs=138.0

Q ss_pred             CCCCCccHHHHHHcCCCCCCC--------------CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHH
Q psy5490           2 PTDSFESPLTLAACGGHVNMP--------------TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLT   67 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~~n~~--------------d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh   67 (352)
                      +|..|.++|.+|+-+|+..++              |..++|+|-+||..|+.++|++||.+|++-..   ++-..+|||-
T Consensus       786 rdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankeh---rnvsDytPls  862 (2131)
T KOG4369|consen  786 RDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEH---RNVSDYTPLS  862 (2131)
T ss_pred             cccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccc---cchhhcCchh
Confidence            466677777777776665543              66677777777777777777777777776433   3344577888


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCC--CCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHH
Q psy5490          68 LAACGGHVDLALLLIERGANIEEVND--EGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVA  145 (352)
Q Consensus        68 ~A~~~g~~~~v~~Ll~~g~~~~~~d~--~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v  145 (352)
                      +|..-|..++|+.|+.+|.+++.+..  .|..||++|.++|+.+.++.|++.|.|+|.....+.+|+|-+|+..|+.|++
T Consensus       863 la~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv  942 (2131)
T KOG4369|consen  863 LARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVV  942 (2131)
T ss_pred             hhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHH
Confidence            88888888888888888877777653  5777888888888888888888888888877777777888888888888888


Q ss_pred             HHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q psy5490         146 DFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEM  186 (352)
Q Consensus       146 ~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  186 (352)
                      .+||.+.+++..   .|.|||+-++..|.+|+-++|+..|+|.+
T Consensus       943 ~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~n  986 (2131)
T KOG4369|consen  943 FLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTN  986 (2131)
T ss_pred             HHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccc
Confidence            888877777655   57788888888888888888888888744

>KOG3676|consensus

Probab=99.77  E-value=5.6e-18  Score=162.85  Aligned_cols=147  Identities=24%  Similarity=0.219  Sum_probs=129.1

Q ss_pred             CCCccHHHHHHcCCCCCCC---------------------CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC------cC
Q psy5490           4 DSFESPLTLAACGGHVNMP---------------------TDSFESPLTLAACGGHVDLALLLIERGANIEE------VN   56 (352)
Q Consensus         4 ~~g~t~L~lA~~~~~~n~~---------------------d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~n   56 (352)
                      .-|+|+||+|..+..-+..                     .+.|.||||+|+.+.+.++|++|++.|+|++.      ..
T Consensus       141 a~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~  220 (782)
T KOG3676|consen  141 ATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFC  220 (782)
T ss_pred             chhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccC
Confidence            4599999999986442221                     55799999999999999999999999999752      01


Q ss_pred             C-----C---------CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCC--
Q psy5490          57 M-----P---------TDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAK--  120 (352)
Q Consensus        57 ~-----~---------~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~--  120 (352)
                      .     .         -..|+.||-+||..++.+||++|+++|+|++.+|..|+|.||..+..-..+|..+++++|++  
T Consensus       221 ~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l  300 (782)
T KOG3676|consen  221 PDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANAL  300 (782)
T ss_pred             cccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            1     1         24588999999999999999999999999999999999999999999999999999999999  


Q ss_pred             cccccccccCcHHHHHHHcCCHHHHHHHHHc
Q psy5490         121 INAHTEETQETALTLACCGGFLDVADFLLKN  151 (352)
Q Consensus       121 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  151 (352)
                      ... .+..|.|||.+|++-|..++.+.+++.
T Consensus       301 ~~v-~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  301 EHV-RNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             ccc-cccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            555 578899999999999999999999998

>KOG4369|consensus

Probab=99.74  E-value=6.1e-19  Score=172.48  Aligned_cols=191  Identities=29%  Similarity=0.401  Sum_probs=167.0

Q ss_pred             CCccHHHHHHcCCC-------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHH
Q psy5490           5 SFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC   71 (352)
Q Consensus         5 ~g~t~L~lA~~~~~-------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~   71 (352)
                      +-.|+|.+||.||+             +...|+.|.+||.+|+-.||..+|+.||++.++++..  .|+.+.|+|-+||.
T Consensus       756 n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQ--sdrtkdt~lSlacs  833 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQ--SDRTKDTMLSLACS  833 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhh--cccccCceEEEecC
Confidence            34678888887765             4445999999999999999999999999999987543  46778999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccc-ccccCcHHHHHHHcCCHHHHHHHHH
Q psy5490          72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHT-EETQETALTLACCGGFLDVADFLLK  150 (352)
Q Consensus        72 ~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~  150 (352)
                      .|..++|++||..|++-..++...+|||-+|...|..++|..|+..|+.++.+. ...|-.||++|.++||.+.++.||+
T Consensus       834 ggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~  913 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQ  913 (2131)
T ss_pred             CCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999998753 3467899999999999999999999


Q ss_pred             cCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHH
Q psy5490         151 NGANIEL----GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFK  197 (352)
Q Consensus       151 ~g~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~  197 (352)
                      .|-++|.    +-+|+|-+|+..|+.|+|.+||.+.++...+...+.+++.
T Consensus       914 ~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplm  964 (2131)
T KOG4369|consen  914 PGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLM  964 (2131)
T ss_pred             ccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccc
Confidence            9988876    5679999999999999999999999887776655554443

>KOG4214|consensus

Probab=99.69  E-value=1.2e-16  Score=113.38  Aligned_cols=99  Identities=31%  Similarity=0.459  Sum_probs=81.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCc
Q psy5490          28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGH  107 (352)
Q Consensus        28 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~  107 (352)
                      .-++|++++|.++-|+..+..|.+++..    ..|++|||+|+-+|++++++||+..|++++.+|+.|.|||.-|+..||
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~----~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI----YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH----hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhh
Confidence            4578888899999998888888775332    468889999999999999999999999999889999999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccccCc
Q psy5490         108 EEMVCVLLQKGAKINAHTEETQET  131 (352)
Q Consensus       108 ~~~v~~Ll~~g~~~~~~~~~~g~t  131 (352)
                      .+||++|+++|++-..+ ...|.+
T Consensus        80 ~~cVklLL~~GAdrt~~-~PdG~~  102 (117)
T KOG4214|consen   80 RDCVKLLLQNGADRTIH-APDGTA  102 (117)
T ss_pred             HHHHHHHHHcCccccee-CCCchh
Confidence            99999999998887764 334533

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.67  E-value=1.2e-15  Score=132.15  Aligned_cols=127  Identities=35%  Similarity=0.467  Sum_probs=108.0

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCc-----HHHHHHHHhcCC--Ccccccccc
Q psy5490          56 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGH-----EEMVCVLLQKGA--KINAHTEET  128 (352)
Q Consensus        56 n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~-----~~~v~~Ll~~g~--~~~~~~~~~  128 (352)
                      ...+..+.+++|.++..+..+++++|+..|++++.++..|.|+||+|+..++     .+++++|++.|+  +.....+..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            3455667888999999999998888889999998888999999999999888     899999999988  455556788


Q ss_pred             cCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcC
Q psy5490         129 QETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSG  182 (352)
Q Consensus       129 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g  182 (352)
                      |.||||+|+..|+.+++++|++.|++++.   .|.|++++|+..++.+++++|++.+
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            88999999999999999999999887654   6789999999999999999998876

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.67  E-value=1.9e-15  Score=130.95  Aligned_cols=129  Identities=33%  Similarity=0.451  Sum_probs=119.2

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCC-----HHHHHHHHHcCC---CCCCc
Q psy5490          20 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGH-----VDLALLLIERGA---NIEEV   91 (352)
Q Consensus        20 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~-----~~~v~~Ll~~g~---~~~~~   91 (352)
                      +..+..+.++++.|+..+..+++++|+..|+++   +.++..|.|+||+|+..++     .+++++|++.|+   ..+.+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV---NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc---ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            344666899999999999999999999999995   6677999999999999999     999999999999   56666


Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcC
Q psy5490          92 NDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNG  152 (352)
Q Consensus        92 d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  152 (352)
                      |..|.||||+|+..|+.+++++|++.|++++. .+..|.|++++|+..++.+++++|++.+
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAGADPNS-RNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcCCCCcc-cccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999999999998 4778999999999999999999999986

>KOG4214|consensus

Probab=99.65  E-value=9.4e-16  Score=108.84  Aligned_cols=92  Identities=28%  Similarity=0.391  Sum_probs=83.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHH
Q psy5490          64 SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLD  143 (352)
Q Consensus        64 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~  143 (352)
                      --+.|++++|.++-|+..+..|.++|..- .|++|||+|+.+|+.++++||+..|++++. .+..|-|||.-|++.||.+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~-kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQD-KDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCC-ccccCCcHHHHHHHHhhHH
Confidence            45789999999999999999998888655 799999999999999999999999999998 4778999999999999999


Q ss_pred             HHHHHHHcCCCCCC
Q psy5490         144 VADFLLKNGANIEL  157 (352)
Q Consensus       144 ~v~~Ll~~g~~~~~  157 (352)
                      ||++||++|++...
T Consensus        82 cVklLL~~GAdrt~   95 (117)
T KOG4214|consen   82 CVKLLLQNGADRTI   95 (117)
T ss_pred             HHHHHHHcCcccce
Confidence            99999999998765

>KOG0515|consensus

Probab=99.62  E-value=1.8e-15  Score=138.48  Aligned_cols=118  Identities=31%  Similarity=0.398  Sum_probs=99.2

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHH
Q psy5490          30 LTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEE  109 (352)
Q Consensus        30 L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~  109 (352)
                      |.-|+..|.+++|+.++..--|+.   ..++.|-|+||-|+..||.+||+||+++|+++|..|.+||||||.|+..+++.
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpS---qpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPS---QPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCC---CCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchH
Confidence            455778899999999887766654   44588999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcccccccccCcHHHHHH--HcCCHHHHHHHHH
Q psy5490         110 MVCVLLQKGAKINAHTEETQETALTLAC--CGGFLDVADFLLK  150 (352)
Q Consensus       110 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~  150 (352)
                      |++.|++.|+-+.+.+-.++.|+...|-  ..|..+|.+||..
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999888777777888887763  4577888888865

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.55  E-value=2.6e-14  Score=142.87  Aligned_cols=105  Identities=29%  Similarity=0.358  Sum_probs=93.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCc
Q psy5490          28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGH  107 (352)
Q Consensus        28 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~  107 (352)
                      ..|+.|+..|+.+++++|+++|+++   |.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi---n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP---NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc
Confidence            3589999999999999999999995   6677999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc-------CCCcccccccccCcHHHHH
Q psy5490         108 EEMVCVLLQK-------GAKINAHTEETQETALTLA  136 (352)
Q Consensus       108 ~~~v~~Ll~~-------g~~~~~~~~~~g~t~L~~A  136 (352)
                      .+++++|+++       |++.+.. +..|.+++..+
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~~~~~-~~~g~~~~~~~  195 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGANAKPD-SFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHHhCCCcccccCCCCCcc-ccCCCCccchh
Confidence            9999999998       7777763 44455554444

>KOG1710|consensus

Probab=99.55  E-value=4.4e-14  Score=120.74  Aligned_cols=123  Identities=30%  Similarity=0.384  Sum_probs=107.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCChHHHHHH
Q psy5490          25 SFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV-NDEGYTPLMEAA  103 (352)
Q Consensus        25 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~-d~~G~t~L~~A~  103 (352)
                      .-..+|..|+-.|+.+-+..||.-   +..+|..|..|.++|..|+..|++++|++|++.|+|+|.. +..++||||+|+
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~---vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLST---VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAA   87 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHH---hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHH
Confidence            346789999999999999999975   3336788899999999999999999999999999999864 457899999999


Q ss_pred             HcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHc
Q psy5490         104 REGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN  151 (352)
Q Consensus       104 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  151 (352)
                      ..|+.++.++|++.|+.... .+.-|+|+-.+|+..|+.+||..+-.+
T Consensus        88 LSGn~dvcrllldaGa~~~~-vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGARMYL-VNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HcCCchHHHHHHhccCcccc-ccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            99999999999999999887 577799999999999999988876544

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.55  E-value=1.4e-14  Score=96.35  Aligned_cols=54  Identities=39%  Similarity=0.636  Sum_probs=31.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHH
Q psy5490          62 FESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL  115 (352)
Q Consensus        62 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll  115 (352)
                      |+|+||+|++.|+.+++++|+++|.+++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456666666666666666666666666666666666666666666666666664

...

>KOG1710|consensus

Probab=99.54  E-value=4.3e-14  Score=120.78  Aligned_cols=118  Identities=31%  Similarity=0.336  Sum_probs=108.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCC
Q psy5490          62 FESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGF  141 (352)
Q Consensus        62 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~  141 (352)
                      -..+|..++..++.+-...|+.---.+|.+|..|+++|..|+..|+.++|++|++.|+|+|...+..+.||||+|+..|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            45789999999999988888887667999999999999999999999999999999999999888899999999999999


Q ss_pred             HHHHHHHHHcCCCC---CCCCCCHHHHHHHcCCHHHHHHHH
Q psy5490         142 LDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLL  179 (352)
Q Consensus       142 ~~~v~~Ll~~g~~~---~~~g~t~L~~A~~~~~~~~v~~Ll  179 (352)
                      .++.++|++.|+..   |.-|+|+-.+|+.-|+.++|.++-
T Consensus        92 ~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   92 QDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             chHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            99999999999985   446899999999999999998763

>KOG0515|consensus

Probab=99.52  E-value=3.6e-14  Score=130.13  Aligned_cols=114  Identities=30%  Similarity=0.346  Sum_probs=101.0

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHH
Q psy5490          66 LTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVA  145 (352)
Q Consensus        66 Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v  145 (352)
                      |.-|+..|-+++|+..+..--|+-..+.+|.|+||.|+..||.+||+||+++|+++|. .|.+||||||.|+.++++.++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa-~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNA-ADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccC-ccCCCCchhhhhhhcCchHHH
Confidence            4557889999999999988889988999999999999999999999999999999999 588899999999999999999


Q ss_pred             HHHHHcCCCCCC----CCCCHHHHHH--HcCCHHHHHHHHH
Q psy5490         146 DFLLKNGANIEL----GASTPLMEAA--QEGHLELVRYLLD  180 (352)
Q Consensus       146 ~~Ll~~g~~~~~----~g~t~L~~A~--~~~~~~~v~~Ll~  180 (352)
                      +.|++.|+-+-.    ++.|+...+-  +.|+.+|.+||..
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999987632    4667776654  5688999999964

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.50  E-value=1.1e-13  Score=138.31  Aligned_cols=87  Identities=32%  Similarity=0.398  Sum_probs=83.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHH
Q psy5490          64 SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLD  143 (352)
Q Consensus        64 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~  143 (352)
                      ..|+.|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~-~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL-LDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCCcHH
Confidence            358899999999999999999999999999999999999999999999999999999998 5778999999999999999


Q ss_pred             HHHHHHHc
Q psy5490         144 VADFLLKN  151 (352)
Q Consensus       144 ~v~~Ll~~  151 (352)
                      ++++|+++
T Consensus       163 iv~~Ll~~  170 (664)
T PTZ00322        163 VVQLLSRH  170 (664)
T ss_pred             HHHHHHhC
Confidence            99999999

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.49  E-value=3.1e-14  Score=95.25  Aligned_cols=55  Identities=38%  Similarity=0.552  Sum_probs=25.2

Q ss_pred             HHHcC-CCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHH
Q psy5490          45 LIERG-ANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEA  102 (352)
Q Consensus        45 Ll~~g-~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A  102 (352)
                      ||++| .+   ++.+|..|+||||+||..|+.++|++|++.|++++.+|.+|+||||+|
T Consensus         1 LL~~~~~~---~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPAD---VNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T-----TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCC---CcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45566 43   456667777777777777777777777777777777777777777765

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=1.1e-13  Score=92.01  Aligned_cols=54  Identities=35%  Similarity=0.589  Sum_probs=45.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHH
Q psy5490          26 FESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLI   82 (352)
Q Consensus        26 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll   82 (352)
                      |.|+||+|++.|+.+++++|+++|.++   +.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di---n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI---NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT---T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999995   556799999999999999999999996

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.44  E-value=1.1e-13  Score=92.63  Aligned_cols=55  Identities=45%  Similarity=0.633  Sum_probs=32.4

Q ss_pred             HHHcC-CCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHH
Q psy5490          81 LIERG-ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLA  136 (352)
Q Consensus        81 Ll~~g-~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  136 (352)
                      |+++| .+++.+|..|+||||+||..|+.+++++|++.|++++. .+..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~-~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNA-KDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT----TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCC-CcCCCCCHHHhC
Confidence            57777 89999999999999999999999999999999999998 577799999987

>KOG0506|consensus

Probab=99.03  E-value=3e-10  Score=103.54  Aligned_cols=88  Identities=23%  Similarity=0.277  Sum_probs=42.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCChHHHHHHHc
Q psy5490          27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIE-RGANIEEVNDEGYTPLMEAARE  105 (352)
Q Consensus        27 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~d~~G~t~L~~A~~~  105 (352)
                      .-.+++|++.|++..++.++-.|.|   ++..|.+.+|+||.|+..|+++++++|++ .+.+++.+|++|+|||.-|...
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~g~D---~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQGMD---LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHhccc---ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            3444555555555555544444444   23344444555555555555555555544 2444455555555555555555


Q ss_pred             CcHHHHHHHHhc
Q psy5490         106 GHEEMVCVLLQK  117 (352)
Q Consensus       106 g~~~~v~~Ll~~  117 (352)
                      +|.+++++|-+.
T Consensus       584 ~h~~v~k~L~~~  595 (622)
T KOG0506|consen  584 KHKEVVKLLEEA  595 (622)
T ss_pred             CcHHHHHHHHHH
Confidence            555555544443

>KOG0783|consensus

Probab=98.98  E-value=2.8e-10  Score=109.98  Aligned_cols=83  Identities=19%  Similarity=0.302  Sum_probs=64.6

Q ss_pred             cCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHH
Q psy5490          55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVND-EGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETAL  133 (352)
Q Consensus        55 ~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~-~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L  133 (352)
                      .|..|..|+|+||+|+..+..++++||+++|+|+..+|. .|+||||-|+.+|++||+-+||.+|+.+.. .|..|..||
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i-~Dkeglspl  123 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRI-KDKEGLSPL  123 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEE-ecccCCCHH
Confidence            566777888888888888888888888888888887776 478888888888888888888888877776 466677887


Q ss_pred             HHHHH
Q psy5490         134 TLACC  138 (352)
Q Consensus       134 ~~A~~  138 (352)
                      ...++
T Consensus       124 q~~~r  128 (1267)
T KOG0783|consen  124 QFLSR  128 (1267)
T ss_pred             HHHhh
Confidence            77665

>KOG0506|consensus

Probab=98.97  E-value=6.1e-10  Score=101.52  Aligned_cols=94  Identities=22%  Similarity=0.184  Sum_probs=74.7

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhc-CCCcccccccccCcHHHHH
Q psy5490          58 PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQK-GAKINAHTEETQETALTLA  136 (352)
Q Consensus        58 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A  136 (352)
                      ++.++...+++|++.|++..++.+.-.|.|++.+|.+.+|+||.||..|++++++||++. +.+++. .|+.|+|||.-|
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~-kDRw~rtPlDdA  580 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDP-KDRWGRTPLDDA  580 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCCh-hhccCCCcchHh
Confidence            345566778889999999888888888889988888889999999999999999988876 667776 466777777777


Q ss_pred             HHcCCHHHHHHHHHcC
Q psy5490         137 CCGGFLDVADFLLKNG  152 (352)
Q Consensus       137 ~~~g~~~~v~~Ll~~g  152 (352)
                      ...+|.+++++|-+.-
T Consensus       581 ~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             HhcCcHHHHHHHHHHh
Confidence            7777777777776653

>KOG0783|consensus

Probab=98.97  E-value=3.4e-10  Score=109.41  Aligned_cols=83  Identities=23%  Similarity=0.329  Sum_probs=77.6

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCh
Q psy5490          19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPT-DSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYT   97 (352)
Q Consensus        19 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t   97 (352)
                      .|+.|..|+|+||+|+..|..++++|||++|+|+   +.+| +.|+||||-|+.+|+++++-+|+.+|..+..+|.+|..
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv---~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkegls  121 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV---FVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLS  121 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCcee---eeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCC
Confidence            7888999999999999999999999999999995   4444 57999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy5490          98 PLMEAAR  104 (352)
Q Consensus        98 ~L~~A~~  104 (352)
                      ||.+.++
T Consensus       122 plq~~~r  128 (1267)
T KOG0783|consen  122 PLQFLSR  128 (1267)
T ss_pred             HHHHHhh
Confidence            9998887

>KOG0818|consensus

Probab=98.95  E-value=3.2e-09  Score=97.31  Aligned_cols=93  Identities=27%  Similarity=0.348  Sum_probs=82.0

Q ss_pred             CCCCCChH------HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Q psy5490          22 PTDSFESP------LTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEG   95 (352)
Q Consensus        22 ~d~~g~t~------L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G   95 (352)
                      .|.+|.+.      ||-.++.|++++.-.||..|++++.+.  -+.|.||||.|++.|+..-+++|+=+|+|++..|..|
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~h--pekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G  200 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFH--PEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG  200 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCC--cccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence            36665544      999999999999999999999976654  2679999999999999999999999999999999999


Q ss_pred             ChHHHHHHHcCcHHHHHHHHh
Q psy5490          96 YTPLMEAAREGHEEMVCVLLQ  116 (352)
Q Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~  116 (352)
                      +||+.+|-..||-++.+-|++
T Consensus       201 mtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHH
Confidence            999999999999887776665

>KOG0782|consensus

Probab=98.91  E-value=5.2e-09  Score=97.44  Aligned_cols=111  Identities=27%  Similarity=0.306  Sum_probs=51.1

Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCc-ccccccccCcHHHHHHHcCCHHHHHH
Q psy5490          69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI-NAHTEETQETALTLACCGGFLDVADF  147 (352)
Q Consensus        69 A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~  147 (352)
                      |+..+++--++-+..+|.++-.++.+-.+.||+|+..|+-|+|+|||++|..- ....++.|.|+||.|+..++..++.+
T Consensus       873 av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~  952 (1004)
T KOG0782|consen  873 AVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQL  952 (1004)
T ss_pred             HHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHH
Confidence            33333333333333344444444444444444444444444444444444321 11123444555555555555555555


Q ss_pred             HHHcCCCC---CCCCCCHHHHHHHcCCHHHHHHHH
Q psy5490         148 LLKNGANI---ELGASTPLMEAAQEGHLELVRYLL  179 (352)
Q Consensus       148 Ll~~g~~~---~~~g~t~L~~A~~~~~~~~v~~Ll  179 (352)
                      |++.|+.+   |..|.||-.-|-+.|+.++..||-
T Consensus       953 lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  953 LVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             HHhcchhheecccCCCChHHHHHhcCCchHHHHHh
Confidence            55555432   334555555555555555555554

>KOG0818|consensus

Probab=98.87  E-value=1e-08  Score=94.10  Aligned_cols=94  Identities=31%  Similarity=0.361  Sum_probs=81.0

Q ss_pred             CCCcCCCCChH------HHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCC---CCC
Q psy5490          88 IEEVNDEGYTP------LMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI---ELG  158 (352)
Q Consensus        88 ~~~~d~~G~t~------L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~  158 (352)
                      +-.+|.+|.++      ||-.++.|+.+..--||..|+++|+...+.|.||||+|++.|..--+++|+-+|+|+   |.+
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~  199 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSS  199 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCC
Confidence            44567777654      788899999999999999999999988888999999999999999999999999997   447


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHc
Q psy5490         159 ASTPLMEAAQEGHLELVRYLLDS  181 (352)
Q Consensus       159 g~t~L~~A~~~~~~~~v~~Ll~~  181 (352)
                      |.||+.+|-..||.++.+-|++.
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHHH
Confidence            89999999999998888877664

>PF13606 Ank_3: Ankyrin repeat

Probab=98.85  E-value=3.8e-09  Score=60.51  Aligned_cols=26  Identities=38%  Similarity=0.804  Sum_probs=10.5

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy5490          63 ESPLTLAACGGHVDLALLLIERGANI   88 (352)
Q Consensus        63 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~   88 (352)
                      +||||+||+.|+.++|++|+++|+|+
T Consensus         3 ~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    3 NTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            34444444444444444444444333

>KOG0782|consensus

Probab=98.84  E-value=3.9e-09  Score=98.26  Aligned_cols=118  Identities=19%  Similarity=0.234  Sum_probs=101.7

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC--CCCcCCCCChHHHHHHHcCc
Q psy5490          30 LTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN--IEEVNDEGYTPLMEAAREGH  107 (352)
Q Consensus        30 L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~--~~~~d~~G~t~L~~A~~~g~  107 (352)
                      |..|+..+++-.++.+...|.++   -.++.+..+.||+|+..|+-++|+||+++|..  +++.|..|.|+||.|+..++
T Consensus       870 il~av~~~D~~klqE~h~~gg~l---l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL---LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce---EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc
Confidence            67788888887777777788874   55667788999999999999999999999863  57778899999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHc
Q psy5490         108 EEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN  151 (352)
Q Consensus       108 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  151 (352)
                      ..++++|++.|+.+.. ++..|.||-.-|-+.|..++..+|-.+
T Consensus       947 r~vc~~lvdagasl~k-td~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  947 RAVCQLLVDAGASLRK-TDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hHHHHHHHhcchhhee-cccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999876 788899999999999999999888654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.83  E-value=4.8e-09  Score=60.08  Aligned_cols=28  Identities=50%  Similarity=0.692  Sum_probs=16.7

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCcc
Q psy5490          95 GYTPLMEAAREGHEEMVCVLLQKGAKIN  122 (352)
Q Consensus        95 G~t~L~~A~~~g~~~~v~~Ll~~g~~~~  122 (352)
                      |+||||+||..|+.|+|++|+++|+++|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5566666666666666666666665554

>KOG0705|consensus

Probab=98.80  E-value=1.7e-08  Score=94.24  Aligned_cols=92  Identities=29%  Similarity=0.344  Sum_probs=71.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCC----CcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHc
Q psy5490          64 SPLTLAACGGHVDLALLLIERGANIE----EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCG  139 (352)
Q Consensus        64 t~Lh~A~~~g~~~~v~~Ll~~g~~~~----~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  139 (352)
                      .-|.-|+...++..+-+|+.+|....    .-+.+|+|+||+||+.|++.+.++|+=+|+|+.. .|..|+|+|.||-+.
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~-rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMA-RDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcccee-cccCCchhhhhHhhc
Confidence            34666777778888888888775432    2345678888888888888888888888888887 577788888888888


Q ss_pred             CCHHHHHHHHHcCCCCC
Q psy5490         140 GFLDVADFLLKNGANIE  156 (352)
Q Consensus       140 g~~~~v~~Ll~~g~~~~  156 (352)
                      |..||+.+|+++|+.-+
T Consensus       705 ~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  705 GSQECIDVLLQYGCPDE  721 (749)
T ss_pred             ccHHHHHHHHHcCCCcc
Confidence            88888888888887644

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.76  E-value=1.4e-08  Score=59.80  Aligned_cols=30  Identities=40%  Similarity=0.588  Sum_probs=13.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCc
Q psy5490          62 FESPLTLAACGGHVDLALLLIERGANIEEV   91 (352)
Q Consensus        62 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~   91 (352)
                      |+||||+|+..|+.+++++|+++|++++.+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~   31 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINAR   31 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCB
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCC
Confidence            344444444444444444444444444433

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705|consensus

Probab=98.74  E-value=2.9e-08  Score=92.75  Aligned_cols=89  Identities=27%  Similarity=0.353  Sum_probs=76.2

Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCccc---ccccccCcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCHHHHHHHcCC
Q psy5490          98 PLMEAAREGHEEMVCVLLQKGAKINA---HTEETQETALTLACCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGH  171 (352)
Q Consensus        98 ~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~g~t~L~~A~~~~~  171 (352)
                      -|.-|+...++..+-+||.+|.....   ..+.+|+|+||+||+.|++.+.++|+=+|+|+   |.+|+|+|.||-+.|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            47777777888888899999865432   23456799999999999999999999999986   6689999999999999


Q ss_pred             HHHHHHHHHcCCCcc
Q psy5490         172 LELVRYLLDSGAQEM  186 (352)
Q Consensus       172 ~~~v~~Ll~~ga~~~  186 (352)
                      -||+.+|+++|+...
T Consensus       707 qec~d~llq~gcp~e  721 (749)
T KOG0705|consen  707 QECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHHcCCCcc
Confidence            999999999998643

>KOG3609|consensus

Probab=98.70  E-value=6.4e-08  Score=94.84  Aligned_cols=125  Identities=22%  Similarity=0.161  Sum_probs=98.8

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHH
Q psy5490          24 DSFESPLTLAACGGHVDLALLLIERGAN-IEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEA  102 (352)
Q Consensus        24 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A  102 (352)
                      ..++--+..|+..|+...|+..++.... .-.+|..|.-|+++|++|+.+.+++++++|+++...+       ..+|.+|
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~a   95 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLA   95 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHH
Confidence            3456678899999999999998876443 1124678888999999999999999999999987665       3489999


Q ss_pred             HHcCcHHHHHHHHhcCCCccc---------ccccccCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy5490         103 AREGHEEMVCVLLQKGAKINA---------HTEETQETALTLACCGGFLDVADFLLKNGANI  155 (352)
Q Consensus       103 ~~~g~~~~v~~Ll~~g~~~~~---------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  155 (352)
                      +..|..++|++|+.+-.....         ..-..+-|||.+||..++.||+++||++|+.+
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            999999999999987433211         01123458999999999999999999999876

>KOG3609|consensus

Probab=98.70  E-value=6e-08  Score=95.01  Aligned_cols=118  Identities=27%  Similarity=0.252  Sum_probs=99.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHH
Q psy5490          61 SFESPLTLAACGGHVDLALLLIER----GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLA  136 (352)
Q Consensus        61 ~g~t~Lh~A~~~g~~~~v~~Ll~~----g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  136 (352)
                      .+.--...|+..|+.-.|+..++.    ..++|++|.-|+++|++|+.+.+.|++++|+++...+       | .+|.+|
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------g-dALL~a   95 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------G-DALLLA   95 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------c-hHHHHH
Confidence            344567889999999999888874    2578899999999999999999999999999986544       2 689999


Q ss_pred             HHcCCHHHHHHHHHcCCCC-------CC------CCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q psy5490         137 CCGGFLDVADFLLKNGANI-------EL------GASTPLMEAAQEGHLELVRYLLDSGAQEM  186 (352)
Q Consensus       137 ~~~g~~~~v~~Ll~~g~~~-------~~------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  186 (352)
                      +..|.+++|++++.+-...       |.      -+-|||++||..+++||+++|+++|+...
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            9999999999999985432       11      35699999999999999999999998654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.69  E-value=2.4e-08  Score=58.79  Aligned_cols=31  Identities=52%  Similarity=0.804  Sum_probs=20.5

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhcCCCcccc
Q psy5490          94 EGYTPLMEAAREGHEEMVCVLLQKGAKINAH  124 (352)
Q Consensus        94 ~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~  124 (352)
                      +|+||||+|+..|+.+++++|+++|++++.+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~   31 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINAR   31 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCB
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCC
Confidence            3666666666666666666666666666653

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522|consensus

Probab=98.65  E-value=7.8e-08  Score=89.41  Aligned_cols=89  Identities=28%  Similarity=0.408  Sum_probs=60.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCc
Q psy5490          28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGH  107 (352)
Q Consensus        28 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~  107 (352)
                      -+||+++...+.+-+..++...+. ..++..|..|.||||+|+..|+.+.++.|+..|+++-.+|.+|+++||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~-~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVS-LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhh-ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCC
Confidence            347777776666555554433322 1245566777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHhc
Q psy5490         108 EEMVCVLLQK  117 (352)
Q Consensus       108 ~~~v~~Ll~~  117 (352)
                      .+++..++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            7766666654

>KOG0522|consensus

Probab=98.59  E-value=2.6e-07  Score=85.99  Aligned_cols=87  Identities=26%  Similarity=0.314  Sum_probs=73.7

Q ss_pred             hHHHHHHHcCCHHHHHH-HH-HcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCC
Q psy5490          64 SPLTLAACGGHVDLALL-LI-ERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGF  141 (352)
Q Consensus        64 t~Lh~A~~~g~~~~v~~-Ll-~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~  141 (352)
                      -+||+++.....+-+.. |. +.+..++.+|..|+||||+|+..|+.+.++.|+..|+++-.+ +..|+++||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~k-N~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIK-NNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcccc-ccccccHHHHHHHcCC
Confidence            45999998877664443 33 346678999999999999999999999999999999999984 7789999999999999


Q ss_pred             HHHHHHHHHc
Q psy5490         142 LDVADFLLKN  151 (352)
Q Consensus       142 ~~~v~~Ll~~  151 (352)
                      .+++..++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            9888777765

>KOG0511|consensus

Probab=98.50  E-value=3.8e-07  Score=81.48  Aligned_cols=59  Identities=36%  Similarity=0.479  Sum_probs=39.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCccc
Q psy5490          65 PLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA  123 (352)
Q Consensus        65 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  123 (352)
                      -|..||+.|+++.|++|++.|.++|.+|++...||.+|+..||.++|++|+++|+-...
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~r   97 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSR   97 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccc
Confidence            46666666666666666666666666666666666666666666666666666665543

>KOG0521|consensus

Probab=98.38  E-value=3.4e-07  Score=92.01  Aligned_cols=77  Identities=31%  Similarity=0.486  Sum_probs=39.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHc
Q psy5490          62 FESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCG  139 (352)
Q Consensus        62 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  139 (352)
                      |.++||.|+..|..-++++|+++|+++|.+|..|++|||.+...|+...+..|+++|++.+. .+..|..+|++|...
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a-~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNA-FDPDGKLPLDIAMEA  732 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccc-cCccCcchhhHHhhh
Confidence            44555555555555555555555555555555555555555555555555555555555554 234444555544433

>KOG0511|consensus

Probab=98.38  E-value=9.9e-07  Score=78.87  Aligned_cols=73  Identities=34%  Similarity=0.339  Sum_probs=62.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHH
Q psy5490          27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEA  102 (352)
Q Consensus        27 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A  102 (352)
                      .--|+.||+.|+++.|++|++.|.++   |..|.....||.+|+..||..+|++|+++|+-...-..+|..++.-|
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV---N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV---NAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGA  109 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc---chhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhh
Confidence            45589999999999999999999995   55667788999999999999999999999998876666777664433

>KOG2384|consensus

Probab=98.36  E-value=1.1e-06  Score=71.54  Aligned_cols=69  Identities=26%  Similarity=0.257  Sum_probs=59.4

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490          16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERG-ANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN   87 (352)
Q Consensus        16 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~   87 (352)
                      .+++|..|..|+|+||+|++.|..+.+.+|+.+| ++   +...|..|.+++-+|-+.|..++|+.|.+.-.+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~---vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF---VGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccc---ccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            5788999999999999999999999999999999 55   466778899999999999999999988886444

>KOG2384|consensus

Probab=98.32  E-value=1.4e-06  Score=70.80  Aligned_cols=66  Identities=20%  Similarity=0.228  Sum_probs=58.8

Q ss_pred             cCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCC
Q psy5490          55 VNMPTDSFESPLTLAACGGHVDLALLLIERG-ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAK  120 (352)
Q Consensus        55 ~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~  120 (352)
                      +|.+|.+|||+|+.|+..|..+.|.||+.+| +++...|..|.+++.+|-+.|..+++..|.+.-.+
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            5788899999999999999999999999999 88999999999999999999999999998887433

>KOG0521|consensus

Probab=98.25  E-value=1.1e-06  Score=88.37  Aligned_cols=89  Identities=30%  Similarity=0.392  Sum_probs=80.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHH
Q psy5490          23 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEA  102 (352)
Q Consensus        23 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A  102 (352)
                      -..|.++||.|+..|...++++||+.|++   +|..|..|++|||.+...|+...+..|+++|++.+..+.+|+++|++|
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~---vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGAD---VNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCc---chhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHH
Confidence            45689999999999999999999999999   577789999999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHH
Q psy5490         103 AREGHEEMVCVL  114 (352)
Q Consensus       103 ~~~g~~~~v~~L  114 (352)
                      ....+.+++-+|
T Consensus       730 ~~~~~~d~~~l~  741 (785)
T KOG0521|consen  730 MEAANADIVLLL  741 (785)
T ss_pred             hhhccccHHHHH
Confidence            877665554433

>KOG0520|consensus

Probab=98.23  E-value=1.7e-06  Score=86.87  Aligned_cols=122  Identities=22%  Similarity=0.133  Sum_probs=91.5

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCChHHHHHHHcCcHHHHHHHH-hcCCCcccccccccCcHHHH
Q psy5490          58 PTDSFESPLTLAACGGHVDLALLLIER-GANIEEVNDEGYTPLMEAAREGHEEMVCVLL-QKGAKINAHTEETQETALTL  135 (352)
Q Consensus        58 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~t~L~~  135 (352)
                      ....|++.||+++..+..-+++.+++- |......|.+|.-.+|+++.. +.+++-+|+ -.|..++. .+..|+|||||
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~l-g~ewA~ll~~~~~~ai~i-~D~~G~tpL~w  647 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAAL-GYEWAFLPISADGVAIDI-RDRNGWTPLHW  647 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhc-CCceeEEEEeeccccccc-ccCCCCcccch
Confidence            345678889999988888888888874 555566677777778885444 445444444 45777777 57778999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCC---------CCCCHHHHHHHcCCHHHHHHHHHc
Q psy5490         136 ACCGGFLDVADFLLKNGANIEL---------GASTPLMEAAQEGHLELVRYLLDS  181 (352)
Q Consensus       136 A~~~g~~~~v~~Ll~~g~~~~~---------~g~t~L~~A~~~~~~~~v~~Ll~~  181 (352)
                      |+.+|+..++..|++.|++...         .|.|+-.+|...|+..+..+|-+.
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999999999887765422         577888999999999888888765

>KOG0520|consensus

Probab=98.22  E-value=1.4e-06  Score=87.30  Aligned_cols=127  Identities=26%  Similarity=0.203  Sum_probs=101.5

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCChH
Q psy5490          21 MPTDSFESPLTLAACGGHVDLALLLIER-GANIEEVNMPTDSFESPLTLAACGGHVDLALLLI-ERGANIEEVNDEGYTP   98 (352)
Q Consensus        21 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll-~~g~~~~~~d~~G~t~   98 (352)
                      .....|++.||+++..++.-+++.+++- |...   ...|.+|.-.+|+ |..++.+..-+|+ -.|..++.+|..|+||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~---~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD---LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCc---hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcc
Confidence            3456789999999999999999999985 4432   3345778888999 5556666555544 4788999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCcccccc-----cccCcHHHHHHHcCCHHHHHHHHHc
Q psy5490          99 LMEAAREGHEEMVCVLLQKGAKINAHTE-----ETQETALTLACCGGFLDVADFLLKN  151 (352)
Q Consensus        99 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-----~~g~t~L~~A~~~g~~~~v~~Ll~~  151 (352)
                      ||+|+..|+..++..|++.|++.....+     -.|.|+-.+|..+|+..+..+|-+.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999999999999998877654332     3488999999999998888777664

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.68  E-value=0.00051  Score=56.11  Aligned_cols=140  Identities=15%  Similarity=0.094  Sum_probs=99.2

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcC
Q psy5490          27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREG  106 (352)
Q Consensus        27 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g  106 (352)
                      +-.|.-|++.+.+.+++.+-+...+    +  -...++.+..||+..+.+||+|+-+.   +...  +-.+-+-+|....
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~----~--~~~~q~LFElAC~~qkydiV~WI~qn---L~i~--~~~~iFdIA~~~k  115 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLEN----E--RYLNQELFELACEEQKYDIVKWIGQN---LHIY--NPEDIFDIAFAKK  115 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhc----c--hhHHHHHHHHHHHHccccHHHHHhhc---cCCC--Cchhhhhhhhhcc
Confidence            4567778889999999887765432    1  13467889999999999999999443   2221  2345677888888


Q ss_pred             cHHHHH----HHHhcCCCccc-ccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q psy5490         107 HEEMVC----VLLQKGAKINA-HTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLD  180 (352)
Q Consensus       107 ~~~~v~----~Ll~~g~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  180 (352)
                      +.++..    +++++...-.. .....-..-|.+|+..|-...+.-.+++|.+++.   ++|..|+.++|..++.+++.
T Consensus       116 DlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~---~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  116 DLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI---IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             chhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH---HHHHHHHHhhHHHHHHHhhc
Confidence            877632    34444222200 0011112578899999999999999999998854   89999999999999999874

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=97.36  E-value=0.0011  Score=55.73  Aligned_cols=112  Identities=16%  Similarity=0.213  Sum_probs=78.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhc----CCCcccccccccCcHHHHHHHc
Q psy5490          64 SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQK----GAKINAHTEETQETALTLACCG  139 (352)
Q Consensus        64 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~~g~t~L~~A~~~  139 (352)
                      -.|--|+...+++-+.-++...-+       -.++|.++..++..+|+.+|+.+    ..++-..  ..+.--+.|+...
T Consensus       155 isledAV~AsN~~~i~~~VtdKkd-------A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~--~~~~ydieY~LS~  225 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKKD-------AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM--EKELYDIEYLLSE  225 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchHH-------HHHHHHHHhcccHHHHHHHHHhhcceecchhhhc--CcchhhHHHHHhh
Confidence            346667777777766666544322       35788899988999999999976    1222111  1122344555443


Q ss_pred             --CCHHHHHHHHHcCC-CCCC------CCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490         140 --GFLDVADFLLKNGA-NIEL------GASTPLMEAAQEGHLELVRYLLDSGAQ  184 (352)
Q Consensus       140 --g~~~~v~~Ll~~g~-~~~~------~g~t~L~~A~~~~~~~~v~~Ll~~ga~  184 (352)
                        -+..+++++|.+|. ++|.      .|.|.|+-|+++++.||+.+||++||-
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence              35788999999984 5554      588999999999999999999999983

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>smart00248 ANK ankyrin repeats

Probab=97.16  E-value=0.00082  Score=36.75  Aligned_cols=22  Identities=41%  Similarity=0.816  Sum_probs=8.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcC
Q psy5490          64 SPLTLAACGGHVDLALLLIERG   85 (352)
Q Consensus        64 t~Lh~A~~~g~~~~v~~Ll~~g   85 (352)
                      ++||+|+..++.+++++|++++
T Consensus         4 ~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        4 TPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC
Confidence            3333333333333333333333

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.03  E-value=0.0012  Score=36.10  Aligned_cols=26  Identities=54%  Similarity=0.707  Sum_probs=13.3

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCC
Q psy5490          95 GYTPLMEAAREGHEEMVCVLLQKGAK  120 (352)
Q Consensus        95 G~t~L~~A~~~g~~~~v~~Ll~~g~~  120 (352)
                      |.|+||+|+..++.+++++|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            44555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=97.01  E-value=0.0013  Score=61.42  Aligned_cols=65  Identities=20%  Similarity=0.084  Sum_probs=37.5

Q ss_pred             HHHHHHHHHcCCCCCCc---CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHH
Q psy5490          39 VDLALLLIERGANIEEV---NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAA  103 (352)
Q Consensus        39 ~~~v~~Ll~~g~~~~~~---n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~  103 (352)
                      .+.+++|.+++.+.+.-   ...+.-.-|+||+|+..|..++|.+||+.|+|+-.+|..|+||+.++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            44566666666554210   111222346666666666666666666666666666666666666655

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.17  E-value=0.033  Score=47.18  Aligned_cols=117  Identities=17%  Similarity=0.158  Sum_probs=77.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCChHHHHHH
Q psy5490          28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVND----EGYTPLMEAA  103 (352)
Q Consensus        28 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~----~G~t~L~~A~  103 (352)
                      -.|.-|+..-+++-+.-++....          +-.++|-++..++..+|+.+|+.+ ......|.    .+.--+-|+.
T Consensus       155 isledAV~AsN~~~i~~~VtdKk----------dA~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~L  223 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKK----------DAHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLL  223 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchH----------HHHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHH
Confidence            44677888777777766654322          235778888888888888888753 12222221    1222344443


Q ss_pred             H--cCcHHHHHHHHhcC-CCcccc--cccccCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy5490         104 R--EGHEEMVCVLLQKG-AKINAH--TEETQETALTLACCGGFLDVADFLLKNGANI  155 (352)
Q Consensus       104 ~--~g~~~~v~~Ll~~g-~~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  155 (352)
                      .  ..+..++++++++| +++|..  .-..|.|.|.-|...++.+++.+||++|+-.
T Consensus       224 S~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  224 SEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             hhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            3  45678899999987 355542  2346889999999999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505|consensus

Probab=96.15  E-value=0.0071  Score=56.67  Aligned_cols=60  Identities=18%  Similarity=0.191  Sum_probs=29.2

Q ss_pred             HHHHHHHHhcCCCccccc-----ccccCcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCHHHHHH
Q psy5490         108 EEMVCVLLQKGAKINAHT-----EETQETALTLACCGGFLDVADFLLKNGANI---ELGASTPLMEAA  167 (352)
Q Consensus       108 ~~~v~~Ll~~g~~~~~~~-----~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~g~t~L~~A~  167 (352)
                      ...+++|.+++.+.|...     +..-.|+||||+..|..++|.+||+.|+|.   |..|+||++++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            344555555555544321     111235555555555555555555555543   334555555544

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.06  E-value=0.052  Score=44.62  Aligned_cols=129  Identities=16%  Similarity=0.103  Sum_probs=88.3

Q ss_pred             ccHHHHHHcCCCCCCC--------C--CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHH
Q psy5490           7 ESPLTLAACGGHVNMP--------T--DSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVD   76 (352)
Q Consensus         7 ~t~L~lA~~~~~~n~~--------d--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~   76 (352)
                      ++.|.-|+..+-+.+.        +  ...++.+..||+..+.|+|+|+-+.   +..     .+-.+.+-.|...++++
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~~~~~q~LFElAC~~qkydiV~WI~qn---L~i-----~~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENERYLNQELFELACEEQKYDIVKWIGQN---LHI-----YNPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcchhHHHHHHHHHHHHccccHHHHHhhc---cCC-----CCchhhhhhhhhccchh
Confidence            3455556655443332        2  3567889999999999999999432   211     23356788999999988


Q ss_pred             HH----HHHHHcCCCCCCcCCC--CChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHH
Q psy5490          77 LA----LLLIERGANIEEVNDE--GYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLK  150 (352)
Q Consensus        77 ~v----~~Ll~~g~~~~~~d~~--G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  150 (352)
                      +.    +++.++...-+..|..  -.--|..|+.+|-...+...+++|.+++.       ++|-.|+..++.+++.+++.
T Consensus       119 LyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~-------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  119 LYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI-------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH-------HHHHHHHHhhHHHHHHHhhc
Confidence            64    2344442222111110  01246789999999999999999988763       78999999999999999875

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.91  E-value=0.11  Score=36.73  Aligned_cols=47  Identities=28%  Similarity=0.340  Sum_probs=29.5

Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHc
Q psy5490          97 TPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN  151 (352)
Q Consensus        97 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  151 (352)
                      ..|..|+.+|+.|+++.+++.+ .++       ...|..|+...+.++++||++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~-------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD-------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH-------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3566777777777777776553 111       2456677777777777777665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.30  E-value=0.18  Score=35.57  Aligned_cols=47  Identities=17%  Similarity=0.284  Sum_probs=22.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhc
Q psy5490          64 SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQK  117 (352)
Q Consensus        64 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~  117 (352)
                      ..|..|+..|+.|+++.+++.+ .++      ..+|..|+...+-++++||+++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3445555555555555555433 111      2245555555555555555554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG0260|consensus

Probab=92.59  E-value=2  Score=45.18  Aligned_cols=12  Identities=42%  Similarity=0.484  Sum_probs=6.7

Q ss_pred             HHHHHHHHHcCC
Q psy5490         172 LELVRYLLDSGA  183 (352)
Q Consensus       172 ~~~v~~Ll~~ga  183 (352)
                      .|+|..|++..+
T Consensus      1376 Eetv~il~~aa~ 1387 (1605)
T KOG0260|consen 1376 EETVDILMDAAA 1387 (1605)
T ss_pred             HHHHHHHHHHHh
Confidence            356666665543

>KOG0260|consensus

Probab=90.98  E-value=3.2  Score=43.71  Aligned_cols=8  Identities=25%  Similarity=0.659  Sum_probs=3.3

Q ss_pred             HHHHHHHH
Q psy5490         143 DVADFLLK  150 (352)
Q Consensus       143 ~~v~~Ll~  150 (352)
                      |.+..|++
T Consensus      1377 etv~il~~ 1384 (1605)
T KOG0260|consen 1377 ETVDILMD 1384 (1605)
T ss_pred             HHHHHHHH
Confidence            34444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	352
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-17
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-09
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-15
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-15
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-14
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-15
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-14
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-15
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-14
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-15
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-14
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-14
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-12
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-14
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		7e-14
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-11
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-13
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-13
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-11
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-13
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-13
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		8e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-13
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		9e-12
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-13
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-13
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-11
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-13
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-11
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-13
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-10
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-07
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		4e-13
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		8e-12
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-12
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		8e-10
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-12
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		5e-12
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		7e-11
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-11
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		8e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		5e-07
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-11
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-11
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-10
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		6e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-05
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-10
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-09
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-09
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		5e-09
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		5e-09
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-08
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-08
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		1e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-08
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		6e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-08
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		5e-08
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		6e-08
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-06
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		6e-08
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		6e-08
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		8e-08
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		7e-06
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		4e-07
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		4e-07
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		4e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		4e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-05
1uoh_A	226	Human Gankyrin Length = 226		4e-07
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		5e-07
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		5e-07
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		5e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		7e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		4e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		7e-07
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		8e-07
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		8e-06
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		4e-06
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		5e-06
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		6e-06
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		1e-05
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		1e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		9e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-04
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		4e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		4e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		5e-05
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		7e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		2e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		2e-04
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-04
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		3e-04
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		3e-04
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		4e-04
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		5e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		5e-04
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		5e-04
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		5e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		5e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		5e-04
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		5e-04
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		6e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 84/157 (53%), Gaps = 34/157 (21%)
Query: 27  ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
            +PL LAA  GH+++  LL+E GA   +VN    +  +PL LAA  GH+++  LL+E GA
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 87  NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVAD 146
           ++   +  G TPL  AAR GH E+V +LL+ GA +NA                       
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD--------------------- 98
Query: 147 FLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
              KNG        TPL  AA+ GHLE+V+ LL++GA
Sbjct: 99  ---KNG-------RTPLHLAARNGHLEVVKLLLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 95  GYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGAN 154
           G TPL  AAR GH E+V +LL+ GA +NA                G L+V   LL+ GA+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 155 I---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
           +   +    TPL  AA+ GHLE+V+ LL++GA
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 70/112 (62%), Gaps = 3/112 (2%)
Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L A G  VN   DS ++PL LAA  GH+++  +L++ GA   +VN      ++PL LAA 
Sbjct: 33  LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA---DVNAADKMGDTPLHLAAL 89
Query: 72  GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
            GH+++  +L++ GA++   +  G+TPL  AA  GH E+V VLL+ GA +NA
Sbjct: 90  YGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 72/151 (47%), Gaps = 34/151 (22%)
Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
           AA  G  D   +L+  GA   +VN   DS ++PL LAA  GH+++  +L++ GA++   +
Sbjct: 21  AARAGQDDEVRILMANGA---DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 93  DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
             G TPL  AA  GH E+V VLL+ GA +NA                GF           
Sbjct: 78  KMGDTPLHLAALYGHLEIVEVLLKNGADVNA------------TDTYGF----------- 114
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
                   TPL  AA  GHLE+V  LL  GA
Sbjct: 115 --------TPLHLAADAGHLEIVEVLLKYGA 137

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 98  PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL 157
            L+EAAR G ++ V +L+  GA +NA                G L++ + LLK+GA++  
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNA-EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNA 75
Query: 158 G---ASTPLMEAAQEGHLELVRYLLDSGA 183
                 TPL  AA  GHLE+V  LL +GA
Sbjct: 76  ADKMGDTPLHLAALYGHLEIVEVLLKNGA 104

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 11  TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
            L A G  VN       +PL LAA  GH+++  +L++ GA+   VN       +PL LAA
Sbjct: 20  ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAA 76
Query: 71  CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
             GH+++  +L++ GA++   + +GYTPL  AAREGH E+V VLL+ GA +NA 
Sbjct: 77  REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 130

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 77/151 (50%), Gaps = 34/151 (22%)
Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
           AA  G  D   +L+  GA+   VN       +PL LAA  GH+++  +L++ GA++   +
Sbjct: 9   AARAGQDDEVRILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 93  DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
            +GYTPL  AAREGH E+V VLL+ GA +NA                          K+G
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD------------------------KDG 101
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
                   TPL  AA+EGHLE+V  LL +GA
Sbjct: 102 -------YTPLHLAAREGHLEIVEVLLKAGA 125

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 11  TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
            L A G  VN       +PL LAA  GH+++  +L++ GA+   VN       +PL LAA
Sbjct: 20  ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAA 76
Query: 71  CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
             GH+++  +L++ GA++   + +GYTPL  AAREGH E+V VLL+ GA +NA
Sbjct: 77  REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 77/151 (50%), Gaps = 34/151 (22%)
Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
           AA  G  D   +L+  GA+   VN       +PL LAA  GH+++  +L++ GA++   +
Sbjct: 9   AARAGQDDEVRILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 93  DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
            +GYTPL  AAREGH E+V VLL+ GA +NA                          K+G
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD------------------------KDG 101
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
                   TPL  AA+EGHLE+V  LL +GA
Sbjct: 102 -------YTPLHLAAREGHLEIVEVLLKAGA 125

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 11  TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
            L A G  VN       +PL LAA  GH+++  +L++ GA+   VN       +PL LAA
Sbjct: 32  ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAA 88
Query: 71  CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
             GH+++  +L++ GA++   + +GYTPL  AAREGH E+V VLL+ GA +NA 
Sbjct: 89  REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 142

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 77/151 (50%), Gaps = 34/151 (22%)
Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
           AA  G  D   +L+  GA+   VN       +PL LAA  GH+++  +L++ GA++   +
Sbjct: 21  AARAGQDDEVRILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 93  DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
            +GYTPL  AAREGH E+V VLL+ GA +NA                          K+G
Sbjct: 78  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD------------------------KDG 113
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
                   TPL  AA+EGHLE+V  LL +GA
Sbjct: 114 -------YTPLHLAAREGHLEIVEVLLKAGA 137

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L   G  VN       +PL  AA  GH ++  LLI +GA   +VN       +PL  AA 
Sbjct: 23  LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA---DVNAKDSDGRTPLHYAAK 79
Query: 72  GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
            GH ++  LLI +GA++   + +G TPL  AA+EGH+E+V +L+ KGA +N
Sbjct: 80  EGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 73/154 (47%), Gaps = 34/154 (22%)
Query: 30  LTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 89
           L  AA  G+ D    LIE GA+   VN       +PL  AA  GH ++  LLI +GA++ 
Sbjct: 8   LIEAAENGNKDRVKDLIENGAD---VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 90  EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLL 149
             + +G TPL  AA+EGH+E+V +L+ KGA +NA                          
Sbjct: 65  AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD---------------------- 102
Query: 150 KNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
                      TPL  AA+EGH E+V+ L+  GA
Sbjct: 103 ---------GRTPLHYAAKEGHKEIVKLLISKGA 127

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 3/112 (2%)
Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L A G  VN   +   +PL LAA  GH+++  +L++ GA   +VN    +  +PL LAA 
Sbjct: 33  LMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA---DVNASDLTGITPLHLAAA 89
Query: 72  GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
            GH+++  +L++ GA++   +++G+TPL  AA+ GH E+V VLL+ GA +NA
Sbjct: 90  TGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
           AA  G  D   +L+  GA++   +++GYTPL  AA  GH E+V VLL+ GA +NA     
Sbjct: 21  AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA-SDLT 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
                      G L++ + LLK+GA++   +    TPL  AA+ GHLE+V  LL  GA
Sbjct: 80  GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 73/113 (64%), Gaps = 5/113 (4%)
Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSF-ESPLTLAA 70
           L A G  VN   ++  +PL LAA  GH+++  +L++ GA+++     +D F  +PL LAA
Sbjct: 33  LMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD----ASDVFGYTPLHLAA 88
Query: 71  CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
             GH+++  +L++ GA++  ++ +G TPL  AA+ G+ E+V VLL+ GA +NA
Sbjct: 89  YWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
           AA  G  D   +L+  GA++   ++ G TPL  AA  GH E+V VLL+ GA ++A     
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDA-SDVF 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
                      G L++ + LLKNGA++    S   TPL  AA+ G+LE+V  LL  GA
Sbjct: 80  GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA 137

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L A G  VN       +PL LAA  GH+++  +L++ GA   +VN   +   +PL LAA 
Sbjct: 33  LMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA---DVNAWDNYGATPLHLAAD 89
Query: 72  GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
            GH+++  +L++ GA++   + EG+TPL  AA +GH E+V VLL+ GA +NA
Sbjct: 90  NGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNA 141

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
           AA  G  D   +L+  GA++   +  G+TPL  AA+ GH E+V VLL+ GA +NA     
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNA-WDNY 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
                      G L++ + LLK+GA++   +    TPL  AA +GHLE+V  LL  GA
Sbjct: 80  GATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 90/174 (51%), Gaps = 13/174 (7%)
Query: 16  GGHVNMPTDSFESPLTLAACGGHVDLALLLIERG--ANIEEVNMPTDSFESPLTLAACGG 73
           GG  + P  +  +PL +AA    V++A  L++ G  AN E V   T     PL LAA  G
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVT-----PLHLAAQEG 256
Query: 74  HVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXX 133
           H ++  LL+ + AN    N  G TPL   A+EGH  +  VL++ G  ++A          
Sbjct: 257 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH 316
Query: 134 XXXCCGGFLDVADFLLKNGANI----ELGASTPLMEAAQEGHLELVRYLLDSGA 183
                G  + +  FLL++ A++    +LG S PL +AAQ+GH ++V  LL +GA
Sbjct: 317 VASHYGN-IKLVKFLLQHQADVNAKTKLGYS-PLHQAAQQGHTDIVTLLLKNGA 368

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 11  TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
            L A G  VN    S  +PL LAA  GH+++  +L++ GA   +VN    +  +PL LAA
Sbjct: 32  ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA---DVNAVDHAGMTPLRLAA 88
Query: 71  CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
             GH+++  +L++ GA++   + EG+TPL  AA  GH E+V VLL+ GA +NA
Sbjct: 89  LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
           AA  G  D   +L+  GA++   +  G+TPL  AA  GH E+V VLL+ GA +NA     
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA-VDHA 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
                      G L++ + LLKNGA++   ++   TPL  AA  GHLE+V  LL +GA
Sbjct: 80  GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L   G  VN       +PL  AA  GH ++  LLI +GA   +VN       +PL  AA 
Sbjct: 23  LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA---DVNAKDSDGRTPLHHAAE 79
Query: 72  GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
            GH ++  LLI +GA++   + +G TPL  AA  GH+E+V +L+ KGA +N
Sbjct: 80  NGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 77/157 (49%), Gaps = 7/157 (4%)
Query: 30  LTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 89
           L  AA  G+ D    LIE GA   +VN       +PL  AA  GH ++  LLI +GA++ 
Sbjct: 8   LIEAAENGNKDRVKDLIENGA---DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN 64
Query: 90  EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLL 149
             + +G TPL  AA  GH+E+V +L+ KGA +NA                G  +V   L+
Sbjct: 65  AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAAENGHKEVVKLLI 123
Query: 150 KNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
             GA++    S   TPL  A + G+ E+V+ L   G 
Sbjct: 124 SKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 75/152 (49%), Gaps = 34/152 (22%)
Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
           AA  G  D   +LI  GA   +VN   ++  +PL LAA  GH+++  +L++ GA+++  +
Sbjct: 21  AARAGQDDEVRILIANGA---DVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 93  DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
             G+TPL  AA  GH E+V VLL+ GA +NA                             
Sbjct: 78  VYGFTPLHLAAMTGHLEIVEVLLKYGADVNA----------------------------- 108
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGAQ 184
              ++  STPL  AA EGHLE+V  LL  GA 
Sbjct: 109 --FDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 98  PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI-- 155
            L+EAAR G ++ V +L+  GA +NA                G L++ + LLK+GA++  
Sbjct: 17  KLLEAARAGQDDEVRILIANGADVNA-VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDA 75
Query: 156 -ELGASTPLMEAAQEGHLELVRYLLDSGAQ 184
            ++   TPL  AA  GHLE+V  LL  GA 
Sbjct: 76  ADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L A G  VN    +  +PL LAA  GH+++  +L++ GA   +VN       +PL LAA 
Sbjct: 33  LMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA---DVNAKDSLGVTPLHLAAR 89
Query: 72  GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
            GH+++  +L++ GA++   +  G+TPL  AA+ GH E+V VLL+ GA +NA
Sbjct: 90  RGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNA 141

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
           AA  G  D   +L+  GA++   +  G+TPL  AA  GH E+V VLL+ GA +NA     
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA-KDSL 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
                      G L++ + LLKNGA++    S   TPL  AA+ GHLE+V  LL +GA
Sbjct: 80  GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L A G  VN    S  +PL LAA  GH+++  +L++ GA++  +++      +PL LAA 
Sbjct: 33  LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG---STPLHLAAL 89
Query: 72  GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
            GH+++  +L++ GA++  V+  G TPL  AA  GH E+V VLL+ GA +NA
Sbjct: 90  IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 34/151 (22%)
Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
           AA  G  D   +L+  GA   +VN    S  +PL LAA  GH+++  +L++ GA++  ++
Sbjct: 21  AARAGQDDEVRILMANGA---DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 93  DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
             G TPL  AA  GH E+V VLL+ GA +NA                             
Sbjct: 78  IXGSTPLHLAALIGHLEIVEVLLKHGADVNA----------------------------- 108
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
             ++    TPL  AA  GHLE+V  LL  GA
Sbjct: 109 --VDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 98  PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGAN--- 154
            L+EAAR G ++ V +L+  GA +NA                G L++ + LLK+GA+   
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNA-TDASGLTPLHLAATYGHLEIVEVLLKHGADVNA 75
Query: 155 IELGASTPLMEAAQEGHLELVRYLLDSGA 183
           I++  STPL  AA  GHLE+V  LL  GA
Sbjct: 76  IDIXGSTPLHLAALIGHLEIVEVLLKHGA 104

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 11  TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
            L A G  VN       +PL LAA  GH+++  +L++ GA   +VN       +PL LAA
Sbjct: 32  ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA---DVNAYDTLGSTPLHLAA 88
Query: 71  CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
             GH+++  +L++ GA++   +D G TPL  AA  GH E+V VLL+ GA +NA
Sbjct: 89  HFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNA 141

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
           AA  G  D   +L+  GA++   +  G+TPL  AA  GH E+V VLL+ GA +NA+    
Sbjct: 21  AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGA 183
                      G L++ + LLKNGA++        TPL  AA  GHLE+V  LL  GA
Sbjct: 81  STPLHLAAHF-GHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L A G  VN   D   +PL LAA  GH ++  +L++ GA++   +  TD + +PL LAA 
Sbjct: 33  LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD--TDGW-TPLHLAAD 89
Query: 72  GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
            GH+++  +L++ GA++   +  G TPL  AA  GH E+V VLL+ GA +NA
Sbjct: 90  NGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 69/151 (45%), Gaps = 34/151 (22%)
Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
           AA  G  D   +L+  GA   +VN   D   +PL LAA  GH ++  +L++ GA++   +
Sbjct: 21  AARAGQDDEVRILMANGA---DVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 93  DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
            +G+TPL  AA  GH E+V VLL+ GA +NA                             
Sbjct: 78  TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAY------------------------- 112
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
                   TPL  AA  GHLE+V  LL  GA
Sbjct: 113 ------GLTPLHLAADRGHLEIVEVLLKHGA 137

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 99  LMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI--- 155
           L+EAAR G ++ V +L+  GA +NAH               G  ++ + LLK+GA++   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWI-GHPEIVEVLLKHGADVNAR 76
Query: 156 ELGASTPLMEAAQEGHLELVRYLLDSGA 183
           +    TPL  AA  GHLE+V  LL  GA
Sbjct: 77  DTDGWTPLHLAADNGHLEIVEVLLKYGA 104

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L A G  VN    S  +PL LAA  GH+++  +L++ GA++  +++      +PL LAA 
Sbjct: 33  LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG---STPLHLAAL 89
Query: 72  GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
            GH+++  +L++ GA++  V+  G TPL  AA  GH E+V VLL+ GA +NA
Sbjct: 90  IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 34/151 (22%)
Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
           AA  G  D   +L+  GA   +VN    S  +PL LAA  GH+++  +L++ GA++  ++
Sbjct: 21  AARAGQDDEVRILMANGA---DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 93  DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
             G TPL  AA  GH E+V VLL+ GA +NA                             
Sbjct: 78  IMGSTPLHLAALIGHLEIVEVLLKHGADVNA----------------------------- 108
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
             ++    TPL  AA  GHLE+V  LL  GA
Sbjct: 109 --VDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 98  PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGAN--- 154
            L+EAAR G ++ V +L+  GA +NA                G L++ + LLK+GA+   
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNA-TDASGLTPLHLAATYGHLEIVEVLLKHGADVNA 75
Query: 155 IELGASTPLMEAAQEGHLELVRYLLDSGA 183
           I++  STPL  AA  GHLE+V  LL  GA
Sbjct: 76  IDIMGSTPLHLAALIGHLEIVEVLLKHGA 104

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 5/114 (4%)
Query: 11  TLAACGGHVNMPTDSFE-SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLA 69
            L A G  VN   D F  +PL L    GH+++  +L++  A   +VN    S  +PL LA
Sbjct: 32  ILMANGADVN-ANDWFGITPLHLVVNNGHLEIIEVLLKYAA---DVNASDKSGWTPLHLA 87
Query: 70  ACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
           A  GH+++  +L++ GA++  ++ +GYTPL  AA +GH E+V VLL+ GA +NA
Sbjct: 88  AYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
           AA  G  D   +L+  GA++   +  G TPL      GH E++ VLL+  A +NA     
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNA-SDKS 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
                      G L++ + LLK GA++   +    TPL  AA++GHLE+V  LL  GA
Sbjct: 80  GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 27  ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
            +PL LAA  GH+++  LL+E GA   +VN    +  +PL LAA  GH+++  LL+E GA
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 87  NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA 119
           ++   +  G TPL  AAR GH E+V +LL+ GA
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 31/121 (25%)
Query: 63  ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
            +PL LAA  GH+++  LL+E GA++   +  G TPL  AAR GH E+V +LL+ GA +N
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 123 AHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSG 182
           A                          KNG        TPL  AA+ GHLE+V+ LL++G
Sbjct: 63  AKD------------------------KNG-------RTPLHLAARNGHLEVVKLLLEAG 91
Query: 183 A 183
           A
Sbjct: 92  A 92

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 11  TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
            L A G  VN   D+  +PL LAA  G +++  +L++ GA   +VN    +  +PL LAA
Sbjct: 24  ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA---DVNASDSAGITPLHLAA 80
Query: 71  CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
             GH+++  +L++ GA++   +  G+TPL  AA  G  E+V VLL+ GA +NA 
Sbjct: 81  YDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQ 134

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
           AA  G  D   +L+  GA++   +D G TPL  AA  G  E+V VLL+ GA +NA     
Sbjct: 13  AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA-SDSA 71
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
                      G L++ + LLK+GA++   +    TPL  AA  G LE+V  LL  GA
Sbjct: 72  GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 11  TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
            L A G  VN       +PL LAA  GH+++  +L++ GA   +VN       +PL LAA
Sbjct: 32  ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA---DVNADDSLGVTPLHLAA 88
Query: 71  CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
             GH+++  +L++ GA++   +  G+TPL  AA  GH E+V VLL+ GA +NA
Sbjct: 89  DRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNA 141

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
           AA  G  D   +L+  GA++   +  G+TPL  AA  GH E+V VLL+ GA +NA     
Sbjct: 21  AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA-DDSL 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
                      G L+V + LLKNGA++   +    TPL  AA  GHLE+V  LL  GA
Sbjct: 80  GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L A G  VN      ++PL LAA  GH+++  +L++ GA++  ++    S  +PL LAA 
Sbjct: 33  LMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDF---SGSTPLHLAAK 89
Query: 72  GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
            GH+++  +L++ GA++   +  G TPL  AA  GH E+V VLL+ GA +NA
Sbjct: 90  RGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNA 141

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 34/151 (22%)
Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
           AA  G  D   +L+  GA   +VN      ++PL LAA  GH+++  +L++ GA++  ++
Sbjct: 21  AARAGQDDEVRILMANGA---DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 93  DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
             G TPL  AA+ GH E+V VLL+ GA +NA                             
Sbjct: 78  FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI------------------------- 112
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
                  STPL  AA  GHLE+V  LL  GA
Sbjct: 113 ------GSTPLHLAADTGHLEIVEVLLKYGA 137

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 98  PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI-- 155
            L+EAAR G ++ V +L+  GA +NA               G  L++ + LLKNGA++  
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVG-HLEIVEVLLKNGADVNA 75
Query: 156 -ELGASTPLMEAAQEGHLELVRYLLDSGA 183
            +   STPL  AA+ GHLE+V  LL  GA
Sbjct: 76  LDFSGSTPLHLAAKRGHLEIVEVLLKYGA 104

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L A G   N       +PL +AA  GH+++  +L+  GA++  V+    +  +PL LAA 
Sbjct: 21  LMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDT---NGTTPLHLAAS 77
Query: 72  GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
            GH+++  +L++ GA++   +  G TPL  AA  GH E+V VLL+ GA +NA
Sbjct: 78  LGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNA 129

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 69/151 (45%), Gaps = 34/151 (22%)
Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
           AA  G  D   +L+  GA   + N       +PL +AA  GH+++  +L+  GA++  V+
Sbjct: 9   AARAGQDDEVRILMANGA---DANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 93  DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
             G TPL  AA  GH E+V VLL+ GA +NA                          K+ 
Sbjct: 66  TNGTTPLHLAASLGHLEIVEVLLKYGADVNA--------------------------KDA 99
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
             I     TPL  AA  GHLE+V  LL  GA
Sbjct: 100 TGI-----TPLYLAAYWGHLEIVEVLLKHGA 125

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 99  LMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI--- 155
           L+EAAR G ++ V +L+  GA  NA+              G  L++ + LL+NGA++   
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVG-HLEIVEVLLRNGADVNAV 64
Query: 156 ELGASTPLMEAAQEGHLELVRYLLDSGA 183
           +   +TPL  AA  GHLE+V  LL  GA
Sbjct: 65  DTNGTTPLHLAASLGHLEIVEVLLKYGA 92

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 57  MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQ 116
           M   +  SPL  AA  GHVD+  +L++ GANI+  +++  TPLMEAA   H E V  L++
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK 65
Query: 117 KGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG---ANIE-LGASTPLMEAAQEGHL 172
            GA ++                G + +V  +LL NG    N +  G  TP++ A +  H+
Sbjct: 66  AGALVDPKDAEGSTCLHLAAKKGHY-EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 173 ELVRYLLDSGA 183
           +LV+ LL  G+
Sbjct: 125 DLVKLLLSKGS 135

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L   G  VN      ++PL LAA  GH ++  LL+ +GA   + N      ++PL LAA 
Sbjct: 23  LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA---DPNAKDSDGKTPLHLAAE 79
Query: 72  GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
            GH ++  LL+ +GA+    + +G TPL  AA  GH+E+V +LL +GA  N
Sbjct: 80  NGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 70/154 (45%), Gaps = 34/154 (22%)
Query: 30  LTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 89
           L  AA  G+ D    L+E GA   +VN      ++PL LAA  GH ++  LL+ +GA+  
Sbjct: 8   LIEAAENGNKDRVKDLLENGA---DVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 90  EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLL 149
             + +G TPL  AA  GH+E+V +LL +GA  NA                          
Sbjct: 65  AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD---------------------- 102
Query: 150 KNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
                      TPL  AA+ GH E+V+ LL  GA
Sbjct: 103 ---------GKTPLHLAAENGHKEVVKLLLSQGA 127

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 80/170 (47%), Gaps = 7/170 (4%)
Query: 16  GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
           G  VN+ T    SPL  A  GGH+    +L++ GA   +VN  T  + +PL  A   G  
Sbjct: 26  GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA---QVNGVTADWHTPLFNACVSGSW 82
Query: 76  DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXX 135
           D   LL++ GA+++  +D   +P+ EAAR GH E V  L+  G  I+ H           
Sbjct: 83  DCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNID-HKISHLGTPLYL 140
Query: 136 XCCGGFLDVADFLLKNGANIELGAS--TPLMEAAQEGHLELVRYLLDSGA 183
            C          LL++GA++  G    +PL   A+    EL   L+D GA
Sbjct: 141 ACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLLMDFGA 190

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 17  GHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVD 76
           GH+    D   +PL  AA  GH +    L+ +GA   +VN  +    +PL LAA  GH +
Sbjct: 1   GHMWGSKDG-NTPLHNAAKNGHAEEVKKLLSKGA---DVNARSKDGNTPLHLAAKNGHAE 56
Query: 77  LALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
           +  LL+ +GA++   + +G TP   A + GH E+V +L  KGA +NA
Sbjct: 57  IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 94  EGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGA 153
           +G TPL  AA+ GH E V  LL KGA +NA                G  ++   LL  GA
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 154 NIEL---GASTPLMEAAQEGHLELVRYLLDSGA 183
           ++       +TP   A + GH E+V+ L   GA
Sbjct: 67  DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 7/175 (4%)
Query: 11  TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
            L + G  VN+ T    SPL  A  GGH+    +L++ GA   +VN  T  + +PL  A 
Sbjct: 77  NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA---QVNGVTADWHTPLFNAC 133
Query: 71  CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXX 130
             G  D   LL++ GA+++  +D   +P+ EAAR GH E V  L+  G  I+ H      
Sbjct: 134 VSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNID-HKISHLG 191
Query: 131 XXXXXXCCGGFLDVADFLLKNGANIELGAS--TPLMEAAQEGHLELVRYLLDSGA 183
                 C          LL++GA++  G    +PL    +    EL   L+D GA
Sbjct: 192 TPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGA 246

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L   G   N       +PL  AA  GH ++  LL+ +GA   + N       +PL  AA 
Sbjct: 23  LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA---DPNAKDSDGRTPLHYAAE 79
Query: 72  GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
            GH ++  LL+ +GA+    + +G TPL  AA  GH+E+V +LL KGA  N
Sbjct: 80  NGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 67/154 (43%), Gaps = 34/154 (22%)
Query: 30  LTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 89
           L  AA  G+ D    L+E GA   + N       +PL  AA  GH ++  LL+ +GA+  
Sbjct: 8   LIEAAENGNKDRVKDLLENGA---DPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 90  EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLL 149
             + +G TPL  AA  GH+E+V +LL KGA  NA                          
Sbjct: 65  AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD---------------------- 102
Query: 150 KNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
                      TPL  AA+ GH E+V+ LL  GA
Sbjct: 103 ---------GRTPLHYAAENGHKEIVKLLLSKGA 127

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 14  ACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGG 73
           A G  VN+ +    SPL +AA  G  DL  LL++ GAN    N        PL LA   G
Sbjct: 74  ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQ---AVPLHLACQQG 130
Query: 74  HVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
           H  +   L++  A   + +  G TPL+ A   GH E+V +LLQ GA INA
Sbjct: 131 HFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA 180

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
           VN+ +    SPL +AA  G  DL  LL++ GAN    N +   PL  A ++GH ++V  L
Sbjct: 79  VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 115 LQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGH 171
           L   AK N              C GG  ++   LL++GA+I       +T L EA  E H
Sbjct: 139 LDSNAKPNK-KDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKH 197
Query: 172 LELVRYLLDSGA 183
           + +V  LL  GA
Sbjct: 198 VFVVELLLLHGA 209

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 19  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
           VN P +   +PL  A+  G ++    L+E GA+    ++     ES L+LA+ GG+ D+ 
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGAD---PHILAKERESALSLASTGGYTDIV 85
Query: 79  LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI 121
            LL+ER  +I   +  G TPL+ A R  H + V  LL +GA +
Sbjct: 86  GLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 28/155 (18%)
Query: 28  SPLTLAACGGHVDLALLLIERGAN--IEEVNMPTDSFESPLTLAACGGHVDLALLLIERG 85
           +PL  A      D+  LL+  GA+  + + N  T     P  LAA  G V L  L + +G
Sbjct: 61  TPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT-----PFILAAIAGSVKLLKLFLSKG 115
Query: 86  ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVA 145
           A++ E +  G+T  MEAA  G  + +  L ++GA +N                       
Sbjct: 116 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK----------------- 158
Query: 146 DFLLKNGANIELGASTPLMEAAQEGHLELVRYLLD 180
               ++   +  G +T LM+AA++GH+E+++ LLD
Sbjct: 159 ----EDQERLRKGGATALMDAAEKGHVEVLKILLD 189

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 28/155 (18%)
Query: 28  SPLTLAACGGHVDLALLLIERGAN--IEEVNMPTDSFESPLTLAACGGHVDLALLLIERG 85
           +PL  A      D+  LL+  GA+  + + N  T     P  LAA  G V L  L + +G
Sbjct: 41  TPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT-----PFLLAAIAGSVKLLKLFLSKG 95
Query: 86  ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVA 145
           A++ E +  G+T  MEAA  G  + +  L ++GA +N                       
Sbjct: 96  ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK----------------- 138
Query: 146 DFLLKNGANIELGASTPLMEAAQEGHLELVRYLLD 180
               ++   +  G +T LM+AA++GH+E+++ LLD
Sbjct: 139 ----EDQERLRKGGATALMDAAEKGHVEVLKILLD 169

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 28  SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
           + L  A     + +A  L+ +G+N   VN    S ++PL  +   G+ +++  L+E GAN
Sbjct: 70  TALIWAVKNNRLGIAEKLLSKGSN---VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN 126
Query: 88  IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
           + + N EG TPL+ A++ G  E+V  LL+ GA I+A 
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 51  NIEEVNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEE 109
           N++ +    DS+  +PL +A   G  +    L+E    +E+ + EG T L+ A +     
Sbjct: 23  NLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLG 82
Query: 110 MVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEA 166
           +   LL KG+ +N                 G+ +++ FLL++GAN+    L   TPL+ A
Sbjct: 83  IAEKLLSKGSNVNTKDFSGKTPLMWSIIF-GYSEMSYFLLEHGANVNDRNLEGETPLIVA 141
Query: 167 AQEGHLELVRYLLDSGA 183
           ++ G  E+V+ LL+ GA
Sbjct: 142 SKYGRSEIVKKLLELGA 158

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 50  ANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEE 109
           AN  +VN   D+  +PL LAA  GH+++  +L++ GA++   +  G TPL  AA  GH E
Sbjct: 35  ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLE 94
Query: 110 MVCVLLQKGAKINAH 124
           +V VLL+ GA +NA 
Sbjct: 95  IVEVLLEYGADVNAQ 109

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 98  PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL 157
            L+EA R G ++ V +L+  GA +NA                G L++ + LLK+GA++  
Sbjct: 17  KLLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 158 GAS---TPLMEAAQEGHLELVRYLLDSGA 183
             S   TPL  AA  GHLE+V  LL+ GA
Sbjct: 76  SDSWGRTPLHLAATVGHLEIVEVLLEYGA 104

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 19  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
           VN P +   +PL  A+  G ++    L+E GA+    ++     ES L+LA+ GG+ D+ 
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGAD---PHILAKERESALSLASTGGYTDIV 85
Query: 79  LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI 121
            LL+ER  +I   +  G TPL+ A    H + V  LL +GA +
Sbjct: 86  GLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADL 128

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 50  ANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEE 109
           AN  +VN   D+  +PL LAA  GH+++  +L++ GA++   +  G TPL  AA  GH E
Sbjct: 35  ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLE 94
Query: 110 MVCVLLQKGAKINAH 124
           +V VLL+ GA +NA 
Sbjct: 95  IVEVLLEYGADVNAQ 109

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 98  PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI-- 155
            L+EA R G ++ V +L+  GA +NA                G L++ + LLK+GA++  
Sbjct: 17  KLLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 156 -ELGASTPLMEAAQEGHLELVRYLLDSGA 183
            ++   TPL  AA  GHLE+V  LL+ GA
Sbjct: 76  SDIWGRTPLHLAATVGHLEIVEVLLEYGA 104

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 50  ANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEE 109
           AN  +VN   D+  +PL LAA  GH+++  +L++ GA++   +  G TPL  AA  GH E
Sbjct: 35  ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLE 94
Query: 110 MVCVLLQKGAKINAH 124
           +V VLL+ GA +NA 
Sbjct: 95  IVEVLLEYGADVNAQ 109

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 98  PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI-- 155
            L+EA R G ++ V +L+  GA +NA                G L++ + LLK+GA++  
Sbjct: 17  KLLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 156 -ELGASTPLMEAAQEGHLELVRYLLDSGA 183
            ++   TPL  AA  GHLE+V  LL+ GA
Sbjct: 76  RDIWGRTPLHLAATVGHLEIVEVLLEYGA 104

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 5/158 (3%)
Query: 28  SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
           + L  A   GH ++   L++ G     VN   D+  SPL +AA  G  ++   L+ +GA+
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGV---PVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAH 98
Query: 88  IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADF 147
           +  VN  G TPL  AA +   E+  +LL+ GA  +A               G    V   
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 148 LL-KNGANIE-LGASTPLMEAAQEGHLELVRYLLDSGA 183
           L  K   NI+    +TPL  A  E  +E  ++L+  GA
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
           AA  G  D   +L+  GA   +VN   +   +PL LA   GH+++  +L++ GA++  V+
Sbjct: 21  AARAGQDDEVRILMANGA---DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 93  DEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
             G+TPL  AA  GH E+  VLL+ GA +NA
Sbjct: 78  AIGFTPLHLAAFIGHLEIAEVLLKHGADVNA 108

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 98  PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGAN--- 154
            L+EAAR G ++ V +L+  GA +NA                G L++ + LLKNGA+   
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNA-KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75
Query: 155 IELGASTPLMEAAQEGHLELVRYLLDSGA 183
           ++    TPL  AA  GHLE+   LL  GA
Sbjct: 76  VDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 5/158 (3%)
Query: 28  SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
           + L  A   GH ++   L++ G     VN   D+  SPL +AA  G  ++   L+ +GA+
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGV---PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH 98
Query: 88  IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADF 147
           +  VN  G TPL  AA +   E+  +LL+ GA  +A               G    V   
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 148 LL-KNGANIE-LGASTPLMEAAQEGHLELVRYLLDSGA 183
           L  K   NI+    +TPL  A  E  +E  ++L+  GA
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
           AA  G  D   +L+  GA   +VN   +   +PL LAA  GH+++  +L++ GA++   +
Sbjct: 21  AARAGQDDEVRILMANGA---DVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 93  DEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
           + G TPL  AA  GH E+V VLL+ GA +NA 
Sbjct: 78  NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQ 109

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
           AA  G  D   +L+  GA++  ++++G TPL  AA+ GH E+V VLL+ GA +NA     
Sbjct: 21  AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANI 155
                      G L++ + LLK+GA++
Sbjct: 81  ITPLHLA-AIRGHLEIVEVLLKHGADV 106

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 32/204 (15%)
Query: 7   ESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPL 66
           E  L L   G  +N       + L  A    +VD+   L+E GANI   N P +    PL
Sbjct: 54  EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI---NQPDNEGWIPL 110
Query: 67  TLAACGGHVDLALLLIERGANIEEVNDEGYTPL----------------------MEAAR 104
             AA  G++D+A  LI +GA++  VN EG TPL                      +EAAR
Sbjct: 111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR 170
Query: 105 EGHEEMVCV----LLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL--- 157
           +  E ++       L  G   +                 G+ +V   L++   ++ +   
Sbjct: 171 KEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230
Query: 158 GASTPLMEAAQEGHLELVRYLLDS 181
              TPL  AA  G  E  R L+++
Sbjct: 231 DGWTPLHAAAHWGKEEACRILVEN 254

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
           AA  G  D   +L+  GA   +VN       +PL LAA   H+++  +L++ GA++   +
Sbjct: 21  AARAGQDDEVRILMANGA---DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 93  DEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
           ++G TPL  AA  GH E+V VLL+ GA +NA
Sbjct: 78  NDGSTPLHLAALFGHLEIVEVLLKHGADVNA 108

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 49/115 (42%), Gaps = 31/115 (26%)
Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
           AA  G  D   +L+  GA++   + +G TPL  AA   H E+V VLL+ GA +NAH    
Sbjct: 21  AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND- 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
                                          STPL  AA  GHLE+V  LL  GA
Sbjct: 80  ------------------------------GSTPLHLAALFGHLEIVEVLLKHGA 104

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 82  IERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGF 141
           IE+   I   ++EG+TPLM AA  G   +V  LLQ GA                 C  G+
Sbjct: 21  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKGY 79
Query: 142 LDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
            D+   LL  G ++   +    TPL+ A    H++ V+ LL+SGA
Sbjct: 80  TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 68  LAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXX 127
           LAA G  + LA   IE+   I   ++EG+TPLM AA  G   +V  LLQ GA        
Sbjct: 26  LAAQGEMLYLATR-IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGK 83
Query: 128 XXXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
                    C  G+ D+   LL  G ++   +    TPL+ A    H++ V+ LL+SGA
Sbjct: 84  GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 5/158 (3%)
Query: 28  SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
           + L  A   GH ++   L++ G     VN   D+  SPL +AA  G  ++   L+ +GA 
Sbjct: 43  TALHWACSAGHTEIVEFLLQLGV---PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 99
Query: 88  IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADF 147
           +  VN  G TPL  AA +   E+  +LL+ GA  +A               G    +   
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 159
Query: 148 L-LKNGANIE-LGASTPLMEAAQEGHLELVRYLLDSGA 183
           L  K   NI+    +TPL  A  E  +E  + L+  GA
Sbjct: 160 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 19  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
           +N   D   SPL  A   G   +  +LI RGA I  +N   D   +PL LAA  GH D+ 
Sbjct: 32  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIV 88
Query: 79  LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI 121
             L++  A+I  VN+ G  PL  A   G +++   L+  GA +
Sbjct: 89  QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           ++N   D   SPL  A   G   +  +LI RGA I  +N    TPL  AA  GH ++V  
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 114 LLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL----------GASTPL 163
           LLQ  A INA             C  G   VA+ L+ NGA + +           A  PL
Sbjct: 91  LLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPL 149
Query: 164 MEAAQE 169
            E  +E
Sbjct: 150 RELLRE 155

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 5/158 (3%)
Query: 28  SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
           + L  A   GH ++   L++ G     VN   D+  SPL +AA  G  ++   L+ +GA 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGV---PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 98
Query: 88  IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADF 147
           +  VN  G TPL  AA +   E+  +LL+ GA  +A               G    +   
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 158
Query: 148 L-LKNGANIE-LGASTPLMEAAQEGHLELVRYLLDSGA 183
           L  K   NI+    +TPL  A  E  +E  + L+  GA
Sbjct: 159 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 196

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 82  IERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGF 141
           IE+   I   ++EG+TPLM AA  G   +V  LLQ GA                 C  G+
Sbjct: 23  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKGY 81
Query: 142 LDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
            D+   LL  G ++   +    TPL+ A    H++ V+ LL+SGA
Sbjct: 82  TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
           AA  G  D   +L   GA   +VN       +PL LAA  GH+++  +L++ GA++    
Sbjct: 21  AARAGQDDEVRILTANGA---DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 93  DEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
           + G TPL  AA   H E+V VLL+ GA +NA
Sbjct: 78  NTGRTPLHLAAWADHLEIVEVLLKHGADVNA 108

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 98  PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL 157
            L+EAAR G ++ V +L   GA +NA+               G L++ + LLKNGA++  
Sbjct: 17  KLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAML-GHLEIVEVLLKNGADVNA 75
Query: 158 GAS---TPLMEAAQEGHLELVRYLLDSGA 183
             +   TPL  AA   HLE+V  LL  GA
Sbjct: 76  TGNTGRTPLHLAAWADHLEIVEVLLKHGA 104

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 19  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
           +N   D   SPL  A   G   +  +LI RGA I  +N   D   +PL LAA  GH D+ 
Sbjct: 27  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIV 83
Query: 79  LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI 121
             L++  A+I  VN+ G  PL  A   G +++   L+  GA +
Sbjct: 84  QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 126

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           ++N   D   SPL  A   G   +  +LI RGA I  +N    TPL  AA  GH ++V  
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 114 LLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL----------GASTPL 163
           LLQ  A INA             C  G   VA+ L+ NGA + +           A  PL
Sbjct: 86  LLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPL 144
Query: 164 MEAAQE 169
            E  +E
Sbjct: 145 RELLRE 150

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
           AA  G  D   +L+  GA++   + +GYTPL  AAREGH E+V VLL+ GA +NA 
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 6/182 (3%)
Query: 6   FESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESP 65
           +E    L   G  V  P     + L  AA    +DL    I +GA ++++    +S  +P
Sbjct: 22  YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS--TP 79
Query: 66  LTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHX 125
           L  A   GH+ + + L++ GA+   ++ EG + +  AA+ GH  +V  L+ KG  ++   
Sbjct: 80  LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD 139
Query: 126 XXXXXXXXXXXCCGGFLDVADFLLKNGANIELG----ASTPLMEAAQEGHLELVRYLLDS 181
                           +D    LL    ++ LG     +T L  A   G+  ++  LL++
Sbjct: 140 QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA 199
Query: 182 GA 183
           GA
Sbjct: 200 GA 201

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
           AA  G  D   +L+  GA   +VN       +PL LAA   H+++  +L++ GA++  ++
Sbjct: 21  AARAGQDDEVRILMANGA---DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 93  DEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
             G TPL   A  GH E+V VLL+ GA +NA
Sbjct: 78  AIGETPLHLVAMYGHLEIVEVLLKHGADVNA 108

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 98  PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGAN--- 154
            L+EAAR G ++ V +L+  GA +NA                  L++ + LLKNGA+   
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA 75
Query: 155 IELGASTPLMEAAQEGHLELVRYLLDSGA 183
           I+    TPL   A  GHLE+V  LL  GA
Sbjct: 76  IDAIGETPLHLVAMYGHLEIVEVLLKHGA 104

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 10/173 (5%)
Query: 27  ESPLTLAACGGHVDLALLLIERGA--NIEEVNMPTDSFESPLTLAACGGHVDLALLLIER 84
           E+ L LAA     D A  L+E  A  NI++ NM      + ++  A G      +L+  R
Sbjct: 26  ETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGV---FQILIRNR 81
Query: 85  GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDV 144
             +++    +G TPL+ AAR   E M+  L+   A +NA                  +D 
Sbjct: 82  ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDA 140
Query: 145 ADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDIL 194
           A  LLKNGAN ++  +   TPL  AA+EG  E  + LLD  A    T H+D L
Sbjct: 141 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 193

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 10/173 (5%)
Query: 27  ESPLTLAACGGHVDLALLLIERGA--NIEEVNMPTDSFESPLTLAACGGHVDLALLLIER 84
           E+ L LAA     D A  L+E  A  NI++ NM      + ++  A G      +L+  R
Sbjct: 59  ETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGV---FQILIRNR 114
Query: 85  GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDV 144
             +++    +G TPL+ AAR   E M+  L+   A +NA                  +D 
Sbjct: 115 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDA 173
Query: 145 ADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDIL 194
           A  LLKNGAN ++  +   TPL  AA+EG  E  + LLD  A    T H+D L
Sbjct: 174 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 226

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 10/173 (5%)
Query: 27  ESPLTLAACGGHVDLALLLIERGA--NIEEVNMPTDSFESPLTLAACGGHVDLALLLIER 84
           E+ L LAA     D A  L+E  A  NI++ NM      + ++  A G      +L+  R
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGV---FQILIRNR 113
Query: 85  GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDV 144
             +++    +G TPL+ AAR   E M+  L+   A +NA                  +D 
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDA 172
Query: 145 ADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDIL 194
           A  LLKNGAN ++  +   TPL  AA+EG  E  + LLD  A    T H+D L
Sbjct: 173 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 225

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 28  SPLTLAACGGHVDLALLLIERGA--NIEEVNMPTDSFESPLTLAACGGHVDLALLLIERG 85
           + L LAA     D A  L+E  A  NI++ NM      + ++  A G      +L+  R 
Sbjct: 59  TALHLAAAYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGV---FQILIRNRA 114
Query: 86  ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVA 145
            +++    +G TPL+ AAR   E M+  L+   A +NA                  +D A
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAA 173
Query: 146 DFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDIL 194
             LLKNGAN ++  +   TPL  AA+EG  E  + LLD  A    T H+D L
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 225

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 78/172 (45%), Gaps = 8/172 (4%)
Query: 27  ESPLTLAACGGHVDLALLLIERGANIE-EVNMPTDSFESPLTLAACGGHVDLALLLIERG 85
           E+ L LAA     D A  L+E  A+   + NM      + ++  A G      +LL  R 
Sbjct: 23  ETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGV---FQILLRNRA 79
Query: 86  ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVA 145
            +++    +G TPL+ AAR   E M+  L+   A +NA                  +D A
Sbjct: 80  TDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAA 138
Query: 146 DFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDIL 194
             LLKNGAN ++  +   TPL  AA+EG  E  + LLD  A    T H+D L
Sbjct: 139 VVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 190

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 28  SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
           +PL  AA    V +   L++ GA   +V+        PL  A   GH ++A LL++ GA 
Sbjct: 44  TPLHFAAGYNRVSVVEYLLQHGA---DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100
Query: 88  IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA 119
           +   +   +TPL EAA +G  E+  +LLQ GA
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 87  NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVAD 146
           N  ++     TPL  AA      +V  LLQ GA ++A             C  G  +VA+
Sbjct: 34  NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-KDKGGLVPLHNACSYGHYEVAE 92
Query: 147 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
            L+K+GA +   +L   TPL EAA +G  E+ + LL  GA
Sbjct: 93  LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 28  SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
           +PL  AA    V +   L++ GA   +V+        PL  A   GH ++A LL++ GA 
Sbjct: 46  TPLHFAAGYNRVSVVEYLLQHGA---DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 102
Query: 88  IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA 119
           +   +   +TPL EAA +G  E+  +LLQ GA
Sbjct: 103 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 134

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 87  NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVAD 146
           N  ++     TPL  AA      +V  LLQ GA ++A             C  G  +VA+
Sbjct: 36  NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-KDKGGLVPLHNACSYGHYEVAE 94
Query: 147 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
            L+K+GA +   +L   TPL EAA +G  E+ + LL  GA
Sbjct: 95  LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 134

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 31/120 (25%)
Query: 64  SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
           +PL LAA    V +  LL++ GA++   +  G  PL  A   GH E+  +LL+ GA +NA
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119
Query: 124 HXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
                             +D+  F             TPL EAA +  +E+   LL  GA
Sbjct: 120 ------------------MDLWQF-------------TPLHEAASKNRVEVCSLLLSHGA 148

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 28  SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
           +PL  AA    V +   L++ GA   +V+        PL  A   GH ++A LL++ GA 
Sbjct: 48  TPLHFAAGYNRVSVVEYLLQHGA---DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 104
Query: 88  IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA 119
           +   +   +TPL EAA +G  E+  +LLQ GA
Sbjct: 105 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 136

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 87  NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVAD 146
           N  ++     TPL  AA      +V  LLQ GA ++A             C  G  +VA+
Sbjct: 38  NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-KDKGGLVPLHNACSYGHYEVAE 96
Query: 147 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
            L+K+GA +   +L   TPL EAA +G  E+ + LL  GA
Sbjct: 97  LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 136

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 28  SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
           SPL LAA  GH     +L+  G +    +  T    +PL +AA  GH ++  +L++ GA+
Sbjct: 36  SPLHLAAQYGHFSTTEVLLRAGVS---RDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 88  IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
           +   +    T L  A    H+E+V +L++ GA ++
Sbjct: 93  VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 80  LLIERGANIEEVN-DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCC 138
           LL+ERGA+I+ V+   G +PL+ A       MV +LLQ GA +NA               
Sbjct: 134 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS-G 192
Query: 139 GGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVR 176
            G L +   L+++GA+  L      TPLM A     ++++R
Sbjct: 193 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 37/129 (28%)
Query: 28  SPLTLAACGGHVDLALLLIERGANIEEVNMPTDS-------------------FESP--- 65
           +PL +A     +++A  LI+RGA+I   N  +DS                     +P   
Sbjct: 41  TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLN 100
Query: 66  ---------LTLAACGGHVDLALLLIERGA-NIEEVNDEGYTPLMEAA--REG---HEEM 110
                    L  AA  GH+D   LL+E G  +I+  ND GYT L+EA   REG   ++++
Sbjct: 101 KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160
Query: 111 VCVLLQKGA 119
           V +L++ GA
Sbjct: 161 VKLLMENGA 169

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
           AA  G  D   +L+  GA++   +  G TPL  AAR GH E+V +LL+ GA +NA 
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 28  SPLTL---AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIER 84
           +PL L   ++  G  DL   +I     +++ ++P D   + L  A C GH ++   L++ 
Sbjct: 36  NPLALLLDSSLEGEFDLVQRII---YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92
Query: 85  GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
           G N+   + +G+TPL  AA   + ++   L++ GA + A
Sbjct: 93  GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 37  GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY 96
           G  DL   +I     +++ ++P D   + L  A C GH ++   L++ G N+   + +G+
Sbjct: 48  GEFDLVQRII---YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW 104
Query: 97  TPLMEAAREGHEEMVCVLLQKGAKINA 123
           TPL  AA   + ++   L++ GA + A
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFA 131

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 31/121 (25%)
Query: 63  ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
           E+ L +A+  G +     L++ G++    +  G+TPL EA   GH ++V +LLQ  A +N
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 123 AHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSG 182
                            G+ +                 +PL +AA+ GH+++V+ LL  G
Sbjct: 71  ---------------TTGYQN----------------DSPLHDAAKNGHVDIVKLLLSYG 99
Query: 183 A 183
           A
Sbjct: 100 A 100

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%)
Query: 50  ANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEE 109
           A  E+VN   +    PL  AA  G +++   L+ +GA+I   +    TPL+ A  EGH  
Sbjct: 28  AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS 87
Query: 110 MVCVLLQKGA 119
            V +LL KGA
Sbjct: 88  CVKLLLSKGA 97

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 53  EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
           E+VN   +    PL  AA  G +++   L+ +GA+I   +    TPL+ A  EGH   V 
Sbjct: 26  EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVK 85
Query: 113 VLLQKGA 119
           +LL KGA
Sbjct: 86  LLLSKGA 92

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 82/188 (43%), Gaps = 9/188 (4%)
Query: 12  LAACGGHVNMPTD-SFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
           L A G  +N   D + E+ L LAA     D A  L++ GA   + N   ++  +PL  A 
Sbjct: 36  LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGA---DANSQDNTGRTPLHAAV 92
Query: 71  CGGHVDL-ALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXX 129
               + +  +LL  R  N+     +G TPL+ AAR   E MV  L+   A INA      
Sbjct: 93  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 152
Query: 130 XXXXXXXCCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEM 186
                        +  + LL + AN +       TPL  AA+EG  E  + LLD+ A   
Sbjct: 153 TALHWAAAVNNT-EAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANRE 211
Query: 187 QTKHIDIL 194
            T H+D L
Sbjct: 212 ITDHMDRL 219

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 46  IERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE 105
           +  GA++  VN   D+  +PL  A     +     L++ GAN+ + +  G  PL  A   
Sbjct: 220 LAHGADVNWVNGGQDN-ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 106 GHEEMVCVLLQKGAKINA 123
           GH  + C+ L++GA + A
Sbjct: 279 GHTGLACLFLKRGADLGA 296

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 1   MPTDSFESPLTLAACGGHVNMPTDSFESPLT---------------LAACGGHVDLALLL 45
            P DS  +P  +A   G++ +    ++ PL                LA      +++  L
Sbjct: 67  YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL 126
Query: 46  IERGANIEEVNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVND-EGYTPLMEAA 103
           IE GA++       D F + PL  AA  G + L  LL   G +     D +G+TPL  A 
Sbjct: 127 IENGASVR----IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 104 REGHEEMVCVLLQK 117
            EGH +   +L++K
Sbjct: 183 AEGHGDAAVLLVEK 196

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 46  IERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE 105
           +  GA++  VN   D+  +PL  A     +     L++ GAN+ + +  G  PL  A   
Sbjct: 220 LAHGADVNWVNGGQDN-ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 106 GHEEMVCVLLQKGAKINA 123
           GH  + C+ L++GA + A
Sbjct: 279 GHTGLACLFLKRGADLGA 296

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 42  ALLLIERGANIEEVNMPTDSFE-----SPLTLAACGGHVDLALLLI-ERGANIEEVNDEG 95
           A LL+E+GA ++         E     + L  AA   +  +   L+ E+G+N ++ +++G
Sbjct: 254 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDG 313
Query: 96  YTPLMEAAREGHEEMVCVLLQKGAKINA 123
            TP+  AA+EG  E+V  L+Q+GA + A
Sbjct: 314 KTPIXLAAQEGRIEVVXYLIQQGASVEA 341

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 2   PTDSFESPLTLAACGGHVNMPTDSFESPLT---------------LAACGGHVDLALLLI 46
           P DS  +P  +A   G++ +    ++ PL                LA      +++  LI
Sbjct: 68  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 47  ERGANIEEVNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVND-EGYTPLMEAAR 104
           E GA++       D F + PL  AA  G + L  LL   G +     D +G+TPL  A  
Sbjct: 128 ENGASVR----IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 105 EGHEEMVCVLLQK 117
           EGH +   +L++K
Sbjct: 184 EGHGDAAVLLVEK 196

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 1   MPTDSFESPLTLAACGGHVNMPTDSFESPLT---------------LAACGGHVDLALLL 45
            P DS  +P  +A   G++ +    ++ PL                LA      +++  L
Sbjct: 67  YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL 126
Query: 46  IERGANIEEVNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVND-EGYTPLMEAA 103
           IE GA++       D F + PL  AA  G + L  LL   G +     D +G+TPL  A 
Sbjct: 127 IENGASVR----IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 104 REGHEEMVCVLLQK 117
            EGH +   +L++K
Sbjct: 183 AEGHGDAAVLLVEK 196

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 46  IERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE 105
           +  GA++  VN   D+  +PL  A     +     L++ GAN+ + +  G  PL  A   
Sbjct: 220 LAHGADVNWVNGGQDN-ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 106 GHEEMVCVLLQKGAKINA 123
           GH  + C+ L++GA + A
Sbjct: 279 GHTGLACLFLKRGADLGA 296

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 81  LIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGG 140
           L  R  +++    +G TPL+ AAR   E M+  L+   A +NA                 
Sbjct: 1   LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNA-VDDLGKSALHWAAAVN 59
Query: 141 FLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDIL 194
            +D A  LLKNGAN ++  +   TPL  AA+EG  E  + LLD  A    T H+D L
Sbjct: 60  NVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	352
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-55
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-52
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-51
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-50
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-49
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-30
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-52
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-49
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-45
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-27
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-51
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-48
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-42
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-25
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-51
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-41
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-32
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-28
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-50
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-49
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-30
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-23
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-50
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-43
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-33
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-26
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-19
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-49
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-48
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-47
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-33
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-26
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-47
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-40
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-39
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-34
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-47
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-43
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-46
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-46
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-45
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-46
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-44
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-36
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-23
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-46
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-38
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-27
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-46
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-42
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-28
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-45
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-44
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-33
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-29
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-45
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-29
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-44
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-44
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-37
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-37
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-44
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-38
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-43
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-39
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-43
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-41
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-28
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-25
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-43
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-38
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-43
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-39
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-38
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-34
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-23
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-43
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-43
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-42
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-41
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-34
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-25
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-43
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-28
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-42
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-36
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-28
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-42
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-39
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-37
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-41
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-38
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-36
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-20
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-41
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-33
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-41
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-41
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-41
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-32
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-41
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-40
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-37
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-18
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-41
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-34
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-23
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-40
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-28
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-28
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-39
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-34
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-33
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-38
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-33
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-15
2rfa_A	232	Transient receptor potential cation channel subfa	6e-38
2rfa_A	232	Transient receptor potential cation channel subfa	1e-31
2rfa_A	232	Transient receptor potential cation channel subfa	2e-22
2rfa_A	232	Transient receptor potential cation channel subfa	9e-20
2rfa_A	232	Transient receptor potential cation channel subfa	2e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-37
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-29
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-37
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-26
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-35
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-24
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-35
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-23
2etb_A	256	Transient receptor potential cation channel subfam	6e-34
2etb_A	256	Transient receptor potential cation channel subfam	3e-25
2etb_A	256	Transient receptor potential cation channel subfam	1e-24
2etb_A	256	Transient receptor potential cation channel subfam	3e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-33
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-30
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-27
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-16
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-30
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-29
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-19
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-08
2pnn_A	273	Transient receptor potential cation channel subfa	8e-30
2pnn_A	273	Transient receptor potential cation channel subfa	2e-25
2pnn_A	273	Transient receptor potential cation channel subfa	9e-16
2pnn_A	273	Transient receptor potential cation channel subfa	1e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-29
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-26
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-25
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-24
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-22
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-29
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-28
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-28
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-29
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-27
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-26
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-25
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-08

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  185 bits (472), Expect = 4e-55
 Identities = 63/192 (32%), Positives = 88/192 (45%), Gaps = 20/192 (10%)

Query: 8   SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
           +PL +AA  GH                 T    +PL +AA  G V +A LL+ER A+   
Sbjct: 115 TPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-- 172

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
            N    +  +PL +A    ++D+  LL+ RG +       GYTPL  AA++   E+   L
Sbjct: 173 -NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231

Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGH 171
           LQ G   NA + +   T L LA   G  ++   LL   AN  LG     TPL   AQEGH
Sbjct: 232 LQYGGSANAESVQ-GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH 290

Query: 172 LELVRYLLDSGA 183
           + +   L+  G 
Sbjct: 291 VPVADVLIKHGV 302

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  177 bits (451), Expect = 5e-52
 Identities = 62/193 (32%), Positives = 91/193 (47%), Gaps = 20/193 (10%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
            +PL +A+  GH              N+     E+PL +AA  GH ++A  L++  A + 
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
                    ++PL  AA  GH ++  LL+E  AN       G+TPL  AAREGH E V  
Sbjct: 75  AKA---KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEG 170
           LL+K A     T++   T L +A   G + VA+ LL+  A+         TPL  A    
Sbjct: 132 LLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 190

Query: 171 HLELVRYLLDSGA 183
           +L++V+ LL  G 
Sbjct: 191 NLDIVKLLLPRGG 203

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  173 bits (442), Expect = 9e-51
 Identities = 62/198 (31%), Positives = 92/198 (46%), Gaps = 20/198 (10%)

Query: 2   PTDSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIER 48
                E+PL +AA  GH             VN      ++PL  AA  GH ++  LL+E 
Sbjct: 43  SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102

Query: 49  GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHE 108
            AN         +  +PL +AA  GHV+  L L+E+ A+   +  +G+TPL  AA+ G  
Sbjct: 103 NANPNLAT---TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV 159

Query: 109 EMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLME 165
            +  +LL++ A  NA  +    T L +A     LD+   LL  G +    A    TPL  
Sbjct: 160 RVAELLLERDAHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 218

Query: 166 AAQEGHLELVRYLLDSGA 183
           AA++  +E+ R LL  G 
Sbjct: 219 AAKQNQVEVARSLLQYGG 236

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  172 bits (439), Expect = 2e-50
 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 7/171 (4%)

Query: 16  GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
           G       +S  +PL +A+  GH+ +   L++RGA+    N+     E+PL +AA  GH 
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGAS---PNVSNVKVETPLHMAARAGHT 60

Query: 76  DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTL 135
           ++A  L++  A +     +  TPL  AAR GH  MV +LL+  A  N  T     T L +
Sbjct: 61  EVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA-GHTPLHI 119

Query: 136 ACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
           A   G ++    LL+  A+         TPL  AA+ G + +   LL+  A
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  171 bits (435), Expect = 1e-49
 Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 20/194 (10%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
            +PL +AA                  N  +    +PL LAA  GH ++  LL+ + AN  
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG- 271

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
             N+   S  +PL L A  GHV +A +LI+ G  ++     GYTPL  A+  G+ ++V  
Sbjct: 272 --NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 329

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEG 170
           LLQ  A +NA T+    + L  A   G  D+   LLKNGA+    +   +TPL  A + G
Sbjct: 330 LLQHQADVNAKTKL-GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388

Query: 171 HLELVRYLLDSGAQ 184
           ++ +   L     +
Sbjct: 389 YISVTDVLKVVTDE 402

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  149 bits (379), Expect = 1e-41
 Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 20/192 (10%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
            +PL LAA  GH              N+   S  +PL L A  GHV +A +LI+ G  ++
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
                     +PL +A+  G++ L   L++  A++      GY+PL +AA++GH ++V +
Sbjct: 306 ATT---RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL 362

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
           LL+ GA  N  + +   T L +A   G++ V D L          +   + +  +    E
Sbjct: 363 LLKNGASPNEVSSD-GTTPLAIAKRLGYISVTDVLKVVTDE---TSFVLVSDKHRMSFPE 418

Query: 174 LVRYLLDSGAQE 185
            V  +LD    E
Sbjct: 419 TVDEILDVSEDE 430

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  119 bits (302), Expect = 1e-30
 Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 84  RGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLD 143
            G +     + G TPL  A+  GH  +V  LLQ+GA  N    +  ET L +A   G  +
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVK-VETPLHMAARAGHTE 61

Query: 144 VADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
           VA +LL+N A +   A    TPL  AA+ GH  +V+ LL++ A
Sbjct: 62  VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 70.6 bits (174), Expect = 1e-13
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 28/133 (21%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
            +PL +A+  G+             VN  T    SPL  AA  GH D+  LL++ GA+  
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP- 370

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLL---IERGANIEEVNDEGYTPLMEAAREGHEEM 110
             N  +    +PL +A   G++ +  +L    +  + +   +    +           E 
Sbjct: 371 --NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP---------ET 419

Query: 111 VCVLLQKGAKINA 123
           V  +L        
Sbjct: 420 VDEILDVSEDEGE 432

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  171 bits (437), Expect = 1e-51
 Identities = 54/186 (29%), Positives = 80/186 (43%), Gaps = 14/186 (7%)

Query: 8   SPLTLAACGGH------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDS 61
            P       G       +     S  SP+  AA  GH      LI +G     VN+ T  
Sbjct: 35  KPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA---VNIITAD 91

Query: 62  FESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI 121
             SPL  A  GGH+    +L++ GA +  V  + +TPL  A   G  + V +LLQ GA +
Sbjct: 92  HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151

Query: 122 NAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYL 178
              ++    + +  A   G ++  + L+  G NI+   S   TPL  A +      V+ L
Sbjct: 152 QPESDL--ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 209

Query: 179 LDSGAQ 184
           L+SGA 
Sbjct: 210 LESGAD 215

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  163 bits (415), Expect = 3e-48
 Identities = 53/193 (27%), Positives = 76/193 (39%), Gaps = 23/193 (11%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
            SPL  A  GGH             VN  T  + +PL  A   G  D   LL++ GA+++
Sbjct: 93  VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
                     SP+  AA  GHV+    LI  G NI+       TPL  A        V  
Sbjct: 153 P----ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK 208

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEG 170
           LL+ GA +N    + Q++ L         ++A  L+  GA+ +        P+     E 
Sbjct: 209 LLESGADVNQ--GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPES 266

Query: 171 HLELVRYLLDSGA 183
            L  + +L   GA
Sbjct: 267 PLAQL-FLEREGA 278

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  148 bits (375), Expect = 2e-42
 Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 21/187 (11%)

Query: 12  LAACGGHVNM------------PTDSFESPLTLAACGGHVDLA-LLLIERGANIEEVNMP 58
           + +   H +               D  +  +  +   G  D   + L+      + V+  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 59  TDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKG 118
           +     P+  AA  GH      LI +G  +  +  +  +PL EA   GH   V +LL+ G
Sbjct: 61  S-----PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115

Query: 119 AKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA--STPLMEAAQEGHLELVR 176
           A++N  T +   T L  AC  G  D  + LL++GA+++  +  ++P+ EAA+ GH+E V 
Sbjct: 116 AQVNGVTADWH-TPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVN 174

Query: 177 YLLDSGA 183
            L+  G 
Sbjct: 175 SLIAYGG 181

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  126 bits (319), Expect = 3e-34
 Identities = 42/160 (26%), Positives = 60/160 (37%), Gaps = 18/160 (11%)

Query: 9   PLTLAACGGHVNM------------PTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 56
           PL  A   G  +             P     SP+  AA  GHV+    LI  G NI+   
Sbjct: 128 PLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKI 187

Query: 57  MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQ 116
                  +PL LA           L+E GA++ +      +PL    R   EE+ C+L+ 
Sbjct: 188 ---SHLGTPLYLACENQQRACVKKLLESGADVNQGKG-QDSPLHAVVRTASEELACLLMD 243

Query: 117 KGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
            GA   A   E  +  + L      L    FL + GA++ 
Sbjct: 244 FGADTQAKNAE-GKRPVELVPPESPLAQL-FLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  116 bits (294), Expect = 1e-30
 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 18/135 (13%)

Query: 2   PTDSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIER 48
           P     SP+  AA  GH             ++       +PL LA           L+E 
Sbjct: 153 PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 212

Query: 49  GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHE 108
           GA++ +        +SPL         +LA LL++ GA+ +  N EG  P+     E   
Sbjct: 213 GADVNQ----GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL 268

Query: 109 EMVCVLLQKGAKINA 123
             +  L ++GA +  
Sbjct: 269 AQLF-LEREGASLPK 282

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  101 bits (254), Expect = 6e-25
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 16/125 (12%)

Query: 68  LAACGGHVDLALLLIERGANIEEVNDE-----GYTPLMEAAREGHEEMVCVLLQKGAKIN 122
           + +   H   +  L+ RG+++  ++ +     G  P       G       LL      +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR-----LLSNPLMGD 55

Query: 123 AHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLL 179
           A ++    + +  A   G       L+  G  + +  +   +PL EA   GHL  V+ LL
Sbjct: 56  AVSD---WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL 112

Query: 180 DSGAQ 184
             GAQ
Sbjct: 113 KHGAQ 117

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  166 bits (423), Expect = 5e-51
 Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 7/158 (4%)

Query: 29  PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
            +   A  G +      IE+   I   +   +   +PL  AA  G + +   L++ GA+ 
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTD---EEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 89  EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
           + +     + L  A  +G+ ++V +LL  G  +N +      T L  A  G  +     L
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN-GGTPLLYAVHGNHVKCVKML 121

Query: 149 LKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
           L++GA+  +        +  A   G+  + + +     
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  139 bits (354), Expect = 9e-41
 Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 17/161 (10%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
            +   A  G              +N   +   +PL  AA  G + +   L++ GA+ + +
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65

Query: 56  NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
                  ES L+LA   G+ D+  +L++ G ++ E +  G TPL+ A    H + V +LL
Sbjct: 66  G---KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122

Query: 116 QKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
           + GA     T+     ++ LA   G+  V   +  +   + 
Sbjct: 123 ESGADPTIETDS-GYNSMDLAVALGYRSVQQVIESHLLKLL 162

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  118 bits (298), Expect = 2e-32
 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 16/132 (12%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
           PL  AA  G                +     ES L+LA   G+ D+  +L++ G ++ E 
Sbjct: 39  PLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEY 98

Query: 56  NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
           +    +  +PL  A  G HV    +L+E GA+     D GY  +  A   G+  +  V+ 
Sbjct: 99  D---WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155

Query: 116 QKGAKINAHTEE 127
               K+  + +E
Sbjct: 156 SHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  106 bits (267), Expect = 5e-28
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 95  GYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN 154
               + + A +G    +   +++   IN  T+E   T L  A   G + V +FLL+NGA+
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINH-TDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 155 IELGA---STPLMEAAQEGHLELVRYLLDSGA 183
            +L      + L  A  +G+ ++V+ LLD G 
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGV 93

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  169 bits (430), Expect = 2e-50
 Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 7/171 (4%)

Query: 16  GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
                       S    A    +V L   L+  GA    +         PL  AA     
Sbjct: 21  SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEF-----PLHQAATLEDT 75

Query: 76  DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTL 135
            +  +L+  G +  + +D+G T L  A   G+ + V + ++K  ++  + +   +T+   
Sbjct: 76  KIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYH 135

Query: 136 ACCGGFLDVADFLLKNGANIELGA--STPLMEAAQEGHLELVRYLLDSGAQ 184
           A     + +  + L    +    A   + +    + GH++++  LLD    
Sbjct: 136 AVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTS 186

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  165 bits (420), Expect = 5e-49
 Identities = 26/190 (13%), Positives = 60/190 (31%), Gaps = 20/190 (10%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           E PL  AA                  +   D   + L  A   G++    L +++   + 
Sbjct: 63  EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM 122

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
                   +++    A     V +    +    +  ++     + +    + GH +M+ +
Sbjct: 123 FYG--KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI-LLSCIHITIKNGHVDMMIL 179

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
           LL      N +        + LA     +++   L K   NI     +  +E       E
Sbjct: 180 LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY----SANLENVLLDDAE 235

Query: 174 LVRYLLDSGA 183
           + + +++   
Sbjct: 236 IAKMIIEKHV 245

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  125 bits (316), Expect = 8e-34
 Identities = 23/185 (12%), Positives = 56/185 (30%), Gaps = 28/185 (15%)

Query: 7   ESPLTLAACGGH-------------VNMPT-DSFESPLTLAACGGHVDLALLLIERGANI 52
            + L  A   G+             +       +++    A     V +    +    + 
Sbjct: 96  NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST 155

Query: 53  EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTP-LMEAAREGHEEMV 111
            ++        S + +    GHVD+ +LL++   +    N   + P +  A      EM+
Sbjct: 156 FDLA----ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEML 211

Query: 112 CVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA-STPLMEAAQEG 170
             L +    I         +A          ++A  +++     +  + +  L       
Sbjct: 212 QALFKYDINIY--------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNK 263

Query: 171 HLELV 175
             E++
Sbjct: 264 LDEII 268

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  116 bits (292), Expect = 2e-30
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 8/118 (6%)

Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEET 128
                   L   L     +  + +  G++    A  + +  +VC LL  GA  N      
Sbjct: 7   INTWKSKQLKSFLS--SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL---LE 61

Query: 129 QETALTLACCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDSGA 183
            E  L  A       +   LL +G +        +T L  A   G+++ V+  +    
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW 119

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 98.0 bits (245), Expect = 1e-23
 Identities = 18/142 (12%), Positives = 45/142 (31%), Gaps = 22/142 (15%)

Query: 4   DSFESPLTLAACGGH------------VNMPTDSFESPLTLAACGGHVDLALLLIERGAN 51
             +++    A                          S + +    GHVD+ +LL++   +
Sbjct: 127 TGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTS 186

Query: 52  IEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMV 111
               N  +  F   + LA     +++   L +   NI        +  +E       E+ 
Sbjct: 187 TNTNN--SLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIA 237

Query: 112 CVLLQKGAKINAHTEETQETAL 133
            ++++K  +  + +       +
Sbjct: 238 KMIIEKHVEYKSDSYTKD-LDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 16/135 (11%), Positives = 37/135 (27%), Gaps = 27/135 (20%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESP-LTLAACGGHVDLALLLIERGANI 52
            S + +    GH              N        P + LA     +++   L +   NI
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI 221

Query: 53  EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
                      S           ++A ++IE+    +  +      +        +E++ 
Sbjct: 222 Y----------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI--VKNNKLDEIIS 269

Query: 113 V-LLQKGAKINAHTE 126
                +   +N   +
Sbjct: 270 KNKELRLMYVNCVKK 284

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  164 bits (419), Expect = 2e-50
 Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 6/158 (3%)

Query: 29  PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
            +   A  G +D     + +G N   VN P +   +PL  A+  G ++    L+E GA+ 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDN--LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 89  EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
             +  E  + L  A+  G+ ++V +LL++   IN +      T L  A  G  +   + L
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG-TPLLYAVRGNHVKCVEAL 121

Query: 149 LKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
           L  GA++   A    TP+  A   G+ ++ + + +   
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  146 bits (371), Expect = 3e-43
 Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 9   PLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
            +   A  G               VN P +   +PL  A+  G ++    L+E GA+   
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
           +       ES L+LA+ GG+ D+  LL+ER  +I   +  G TPL+ A R  H + V  L
Sbjct: 65  LA---KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
           L +GA +    +    T + LA   G+  V   +  +   + 
Sbjct: 122 LARGADLTTEADS-GYTPMDLAVALGYRKVQQVIENHILKLF 162

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  120 bits (303), Expect = 3e-33
 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 16/128 (12%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
           PL  A+  G               ++     ES L+LA+ GG+ D+  LL+ER  +I   
Sbjct: 39  PLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY 98

Query: 56  NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
           +    +  +PL  A  G HV     L+ RGA++    D GYTP+  A   G+ ++  V+ 
Sbjct: 99  D---WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155

Query: 116 QKGAKINA 123
               K+  
Sbjct: 156 NHILKLFQ 163

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  103 bits (259), Expect = 1e-26
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 95  GYTPLMEAAREGHEEMVCVLLQKGA-KINAHTEETQETALTLACCGGFLDVADFLLKNGA 153
               + + A +G  + +   L+KG   +N   +E   T L  A   G ++   FLL+ GA
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNK-PDERGFTPLIWASAFGEIETVRFLLEWGA 60

Query: 154 NIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
           +  + A    + L  A+  G+ ++V  LL+   
Sbjct: 61  DPHILAKERESALSLASTGGYTDIVGLLLERDV 93

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 82.1 bits (204), Expect = 5e-19
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 16/105 (15%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           ES L+LA+ GG+             +N+   +  +PL  A  G HV     L+ RGA++ 
Sbjct: 70  ESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT 129

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTP 98
                 DS  +P+ LA   G+  +  ++      + + N     P
Sbjct: 130 TEA---DSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 45.5 bits (109), Expect = 4e-06
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query: 158 GASTPLMEAAQEGHLELVRYLLDSGAQE 185
           G S  + + A +G L+ ++  L  G   
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNL 28

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  164 bits (417), Expect = 4e-49
 Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 21/193 (10%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
            +  A   G              V  P     + L  AA    +DL    I +GA ++++
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71

Query: 56  NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
               D   +PL  A   GH+ + + L++ GA+   ++ EG + +  AA+ GH  +V  L+
Sbjct: 72  G--GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI 129

Query: 116 QKGAKINAHTEETQETALTLACCGGF-LDVADFLLKNGANIE----LGASTPLMEAAQEG 170
            KG  ++   +    T L  A      +D    LL    ++        +T L  A   G
Sbjct: 130 AKGQDVDMMDQN-GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188

Query: 171 HLELVRYLLDSGA 183
           +  ++  LL++GA
Sbjct: 189 NTTVISLLLEAGA 201

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  161 bits (409), Expect = 6e-48
 Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 21/193 (10%)

Query: 9   PLTLAACGGH-------------VNMPT-DSFESPLTLAACGGHVDLALLLIERGANIEE 54
            L  AA                 V+    D   +PL  A   GH+ + + L++ GA+   
Sbjct: 45  LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL 104

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHE-EMVCV 113
           ++       S + LAA  GH  +   LI +G +++ ++  G TPLM AA   H  +   +
Sbjct: 105 ID---GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEG 170
           LL     +N   +  + TAL  A   G   V   LL+ GAN++       + L  A Q  
Sbjct: 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK 221

Query: 171 HLELVRYLLDSGA 183
           ++ ++ +L ++  
Sbjct: 222 NVWMINHLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  160 bits (407), Expect = 1e-47
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 9/171 (5%)

Query: 18  HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDL 77
           H+    D     +  A   G  +    L+E G ++ + +       + L  AA    +DL
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPD---KENVTLLHWAAINNRIDL 57

Query: 78  ALLLIERGANIEEV-NDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLA 136
               I +GA ++++  D   TPL  A R+GH  MV  L++ GA  +    E   + + LA
Sbjct: 58  VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGC-SCIHLA 116

Query: 137 CCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGH-LELVRYLLDSGA 183
              G   +  +L+  G ++++      TPLM AA   H ++  R LL    
Sbjct: 117 AQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV 167

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  123 bits (311), Expect = 1e-33
 Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 19/163 (11%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
           PL  A   GH              ++      S + LAA  GH  +   LI +G +++ +
Sbjct: 79  PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138

Query: 56  NMPTDSFESPLTLAACGGH-VDLALLLIERGANIEEV-NDEGYTPLMEAAREGHEEMVCV 113
           +    +  +PL  AA   H VD   LL+    ++         T L  A   G+  ++ +
Sbjct: 139 D---QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
           LL+ GA ++A   +  E+AL LA     + + + L +      
Sbjct: 196 LLEAGANVDAQNIK-GESALDLAKQRKNVWMINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  103 bits (260), Expect = 3e-26
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 16/130 (12%)

Query: 8   SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGH-VDLALLLIERGANIE 53
           S + LAA  GH             V+M   +  +PL  AA   H VD   LL+    ++ 
Sbjct: 111 SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN 170

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
             +       + L  A   G+  +  LL+E GAN++  N +G + L  A +  +  M+  
Sbjct: 171 LGD--KYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINH 228

Query: 114 LLQKGAKINA 123
           L +       
Sbjct: 229 LQEARQAKGY 238

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 61.3 bits (150), Expect = 4e-11
 Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 18/99 (18%)

Query: 9   PLTLAACGGH--------------VNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIE 53
           PL  AA   H              VN+       + L  A   G+  +  LL+E GAN++
Sbjct: 145 PLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD 204

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
             N      ES L LA    +V +   L E        N
Sbjct: 205 AQN---IKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  163 bits (414), Expect = 2e-47
 Identities = 48/181 (26%), Positives = 72/181 (39%), Gaps = 8/181 (4%)

Query: 7   ESPLTLAACGGHVNMPTDSFESPLTLAAC-GGHVDLALLLIERGANIEEVNMPTDSFESP 65
           +S L LA       +  +  +  L  AA  G    L  LL     N    +       +P
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASD---GRKSTP 61

Query: 66  LTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHT 125
           L LAA    V +  LL++ GA++   +  G  PL  A   GH E+  +LL+ GA +NA  
Sbjct: 62  LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121

Query: 126 EETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSG 182
              Q T L  A     ++V   LL +GA+  L      + +  A      E + Y     
Sbjct: 122 LW-QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180

Query: 183 A 183
           +
Sbjct: 181 S 181

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  143 bits (362), Expect = 7e-40
 Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 27/189 (14%)

Query: 9   PLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
            L  AA  G+               +       +PL LAA    V +  LL++ GA++  
Sbjct: 27  ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
            +        PL  A   GH ++  LL++ GA +  ++   +TPL EAA +   E+  +L
Sbjct: 87  KD---KGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143

Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLEL 174
           L  GA          ++A+ +A      +   +  K  +         L++AA+E  L  
Sbjct: 144 LSHGADPTLVNCH-GKSAVDMAPTPELRERLTYEFKGHS---------LLQAAREADLAK 193

Query: 175 VRYLLDSGA 183
           V+  L    
Sbjct: 194 VKKTLALEI 202

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  140 bits (356), Expect = 6e-39
 Identities = 51/218 (23%), Positives = 76/218 (34%), Gaps = 46/218 (21%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
             PL  A   GH             VN       +PL  AA    V++  LL+  GA+  
Sbjct: 92  LVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-- 149

Query: 54  EVNMPTDSFESPLTLAACGGHVDLA----------------------LLLIERGANIEEV 91
              +     +S + +A      +                          L     N ++ 
Sbjct: 150 -PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ- 207

Query: 92  NDEGYTPLMEAAREGHE---EMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
                T L  A    H    ++  +LL+KGA +N   ++   T L +A      DV + L
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD-FMTPLHVAAERAHNDVMEVL 266

Query: 149 LKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
            K+GA +    S   T L  AA  GHL+  R LL  G+
Sbjct: 267 HKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS 304

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  128 bits (324), Expect = 2e-34
 Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 13/159 (8%)

Query: 16  GGHVNMPTDSFESPLTLAACGGH---VDLALLLIERGANIEEVNMPTDSFESPLTLAACG 72
                    S E+ L  A    H     +A LL+ +GAN+ E N     F +PL +AA  
Sbjct: 201 EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN---KDFMTPLHVAAER 257

Query: 73  GHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETA 132
            H D+  +L + GA +  ++  G T L  AA  GH +   +LL  G+  +  + +   TA
Sbjct: 258 AHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQ-GFTA 316

Query: 133 LTLACCGGFLDVADFLLKNGANIELG-ASTPLMEAAQEG 170
             +       +    +L     +        L+EA++ G
Sbjct: 317 AQMGN-----EAVQQILSESTPMRTSDVDYRLLEASKAG 350

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  158 bits (401), Expect = 9e-47
 Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 11/168 (6%)

Query: 22  PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLL 81
           P  + +  L               I  G  ++          + L  ++  G  DL   +
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF----NPLPLALLLDSSLEGEFDLVQRI 56

Query: 82  IERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGF 141
           I    +    NDEG T L  A   GH E+V  L+Q G  +NA   +   T L  A     
Sbjct: 57  IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD-GWTPLHCAASCNN 115

Query: 142 LDVADFLLKNGANIE------LGASTPLMEAAQEGHLELVRYLLDSGA 183
           + V  FL+++GA +       +  +    E  +EG+ +  ++L     
Sbjct: 116 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  148 bits (376), Expect = 3e-43
 Identities = 38/191 (19%), Positives = 67/191 (35%), Gaps = 22/191 (11%)

Query: 2   PTDSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIER 48
           P  + +  L                     V        + L  ++  G  DL   +I  
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 49  GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHE 108
             +    N   D   + L  A C GH ++   L++ G N+   + +G+TPL  AA   + 
Sbjct: 60  VDDPSLPN---DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV 116

Query: 109 EMVCVLLQKGAKINAHTEETQETALTL--ACCGGFLDVADFLLKNGANIEL---GASTPL 163
           ++   L++ GA + A T    +TA         G+   + FL      + +   G    L
Sbjct: 117 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176

Query: 164 MEAAQEGHLEL 174
            +   +   EL
Sbjct: 177 WDYEPQNDDEL 187

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  157 bits (399), Expect = 2e-46
 Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 19  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
             M   +  SPL  AA  GHVD+  +L++ GANI+  +   +   +PL  AA   H++  
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCS---EDQRTPLMEAAENNHLEAV 60

Query: 79  LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAK-INAHTEETQETALTLAC 137
             LI+ GA ++  + EG T L  AA++GH E+V  LL  G   +N   +    T +  A 
Sbjct: 61  KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG-GWTPMIWAT 119

Query: 138 CGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
               +D+   LL  G++I +     +  L  AA  G +++   LL +  
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC 168

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  156 bits (398), Expect = 2e-46
 Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 21/194 (10%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
            SPL  AA  GH             ++  ++   +PL  AA   H++    LI+ GA ++
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGA-NIEEVNDEGYTPLMEAAREGHEEMVC 112
             +       + L LAA  GH ++   L+  G  ++   +D G+TP++ A    H ++V 
Sbjct: 72  PKD---AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128

Query: 113 VLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQE 169
           +LL KG+ IN    E +   L  A   G +D+A+ LL    ++        +PL  AA+E
Sbjct: 129 LLLSKGSDINIRDNE-ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARE 187

Query: 170 GHLELVRYLLDSGA 183
              + V   L   +
Sbjct: 188 NRYDCVVLFLSRDS 201

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  153 bits (389), Expect = 5e-45
 Identities = 44/193 (22%), Positives = 74/193 (38%), Gaps = 19/193 (9%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
            +PL  AA   H             V+       + L LAA  GH ++   L+  G    
Sbjct: 45  RTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ--M 102

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           +VN   D   +P+  A    HVDL  LL+ +G++I   ++E    L  AA  G  ++  +
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEG 170
           LL     ++A      ++ L +A      D     L   +++ L      TPL  A+   
Sbjct: 163 LLAAKCDLHAVNIH-GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNS 221

Query: 171 HLELVRYLLDSGA 183
            +     +  +  
Sbjct: 222 QVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  125 bits (317), Expect = 2e-34
 Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 18/160 (11%)

Query: 9   PLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
            L LAA  GH              VN   D   +P+  A    HVDL  LL+ +G++I  
Sbjct: 80  CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
            +   +     L  AA  G VD+A +L+    ++  VN  G +PL  AARE   + V + 
Sbjct: 140 RD---NEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196

Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN 154
           L + + +    +E  ET L  A     +  A  + K   +
Sbjct: 197 LSRDSDVTLKNKE-GETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  109 bits (275), Expect = 2e-28
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 4/110 (3%)

Query: 86  ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVA 145
            N +  +    +PL  AA  GH ++  +L+Q GA I+  +E+ Q T L  A     L+  
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSED-QRTPLMEAAENNHLEAV 60

Query: 146 DFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGAQEMQTKHID 192
            +L+K GA ++      ST L  AA++GH E+V+YLL +G  ++  +   
Sbjct: 61  KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  156 bits (398), Expect = 2e-46
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 10/179 (5%)

Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
               G  +++  +  ++PL LA       +  LL+  GA+   ++      ++   LA  
Sbjct: 32  FQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD---RHGQTAAHLACE 88

Query: 72  GGHVDLALLLIERGA----NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEE 127
                    L++  A    ++E  N +G T L  A     +E V +LL++GA I+A   +
Sbjct: 89  HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK 148

Query: 128 TQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
           +  + L  A     L +   LL++GAN+       S+ L  A+  G L LVR L+ SGA
Sbjct: 149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA 207

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  150 bits (381), Expect = 8e-44
 Identities = 47/193 (24%), Positives = 74/193 (38%), Gaps = 19/193 (9%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE- 54
           PL LA                          ++   LA           L++  A     
Sbjct: 49  PLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDE-GYTPLMEAAREGHEEMVCV 113
           +        + L +A      +   LL+ERGA+I+ V+ + G +PL+ A       MV +
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEG 170
           LLQ GA +NA       +AL  A   G L +   L+++GA+  L      TPLM A    
Sbjct: 169 LLQHGANVNAQMYS-GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 227

Query: 171 HLELVRYLLDSGA 183
            ++++R      A
Sbjct: 228 VIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  131 bits (333), Expect = 1e-36
 Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 20/165 (12%)

Query: 7   ESPLTLAACGGH-----------------VNMPTDSFESPLTLAACGGHVDLALLLIERG 49
           ++   LA                      +        + L +A      +   LL+ERG
Sbjct: 80  QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139

Query: 50  ANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEE 109
           A+I+ V+    S  SPL  A     + +  LL++ GAN+      G + L  A+  G   
Sbjct: 140 ADIDAVD--IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP 197

Query: 110 MVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN 154
           +V  L++ GA  +       +T L +A     +D+        A+
Sbjct: 198 LVRTLVRSGADSSLKNCH-NDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 94.4 bits (236), Expect = 9e-23
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 90  EVNDEGYTPLMEAAREGHEEMVCVLL----QKGAKINAHTEETQETALTLACCGGFLDVA 145
             +++G TPL  A  +G+   V  L+    Q G +++ +    ++T L LA       V 
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVV 62

Query: 146 DFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGAQE 185
             L+  GA+         T    A +      +R LLDS A  
Sbjct: 63  RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPG 105

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  153 bits (390), Expect = 4e-46
 Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 7/154 (4%)

Query: 29  PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
            L  AA  G  D   +L+  GA++   +    S  +PL LAA  GH+++  +L++ GA++
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNAED---ASGWTPLHLAAFNGHLEIVEVLLKNGADV 73

Query: 89  EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
             V+  G TPL  AA  GH E+V VLL+ GA +NA  +    T L LA   G L++ + L
Sbjct: 74  NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA-NDMEGHTPLHLAAMFGHLEIVEVL 132

Query: 149 LKNGANIELGA---STPLMEAAQEGHLELVRYLL 179
           LKNGA++        T    +   G+ +L   L 
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  134 bits (339), Expect = 2e-38
 Identities = 52/143 (36%), Positives = 71/143 (49%), Gaps = 14/143 (9%)

Query: 44  LLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAA 103
                G+++             L  AA  G  D   +L+  GA++   +  G+TPL  AA
Sbjct: 6   HHHHHGSDLG----------KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAA 55

Query: 104 REGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---S 160
             GH E+V VLL+ GA +NA       T L LA   G L++ + LLKNGA++        
Sbjct: 56  FNGHLEIVEVLLKNGADVNAVDHA-GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH 114

Query: 161 TPLMEAAQEGHLELVRYLLDSGA 183
           TPL  AA  GHLE+V  LL +GA
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGA 137

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  104 bits (263), Expect = 3e-27
 Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 5/104 (4%)

Query: 84  RGANIEEVND-EGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFL 142
           RG++    +  +    L+EAAR G ++ V +L+  GA +NA  + +  T L LA   G L
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNA-EDASGWTPLHLAAFNGHL 60

Query: 143 DVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
           ++ + LLKNGA++        TPL  AA  GHLE+V  LL +GA
Sbjct: 61  EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 95.9 bits (240), Expect = 5e-24
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 16/124 (12%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
            +PL LAA  GH             VN    +  +PL LAA  GH+++  +L++ GA++ 
Sbjct: 48  WTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
             +       +PL LAA  GH+++  +L++ GA++   +  G T    +   G+E++  +
Sbjct: 108 AND---MEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164

Query: 114 LLQK 117
           L + 
Sbjct: 165 LQKL 168

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  153 bits (390), Expect = 6e-46
 Identities = 47/158 (29%), Positives = 64/158 (40%), Gaps = 6/158 (3%)

Query: 29  PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
            +      G+     L ++   N  ++N   D   SPL  A   G   +  +LI RGA I
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTEN--DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65

Query: 89  EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
             +N    TPL  AA  GH ++V  LLQ  A INA  E      L  AC  G   VA+ L
Sbjct: 66  NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH-GNVPLHYACFWGQDQVAEDL 124

Query: 149 LKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
           + NGA + +       P+ +A       L       G 
Sbjct: 125 VANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  142 bits (362), Expect = 8e-42
 Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 21/178 (11%)

Query: 9   PLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
            +      G+              +N   D   SPL  A   G   +  +LI RGA I  
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
           +N      ++PL LAA  GH D+   L++  A+I  VN+ G  PL  A   G +++   L
Sbjct: 68  MNR---GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124

Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHL 172
           +  GA ++   +   E  +  A       + +   K G N+      P  +   +G  
Sbjct: 125 VANGALVSICNKY-GEMPVDKAKAPLRELLRERAEKMGQNLN---RIPYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  106 bits (267), Expect = 8e-28
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 16/130 (12%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
            SPL  A   G              +N+     ++PL LAA  GH D+   L++  A+I 
Sbjct: 40  FSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 99

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
            VN   +    PL  A   G   +A  L+  GA +   N  G  P+ +A     E +   
Sbjct: 100 AVN---EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRER 156

Query: 114 LLQKGAKINA 123
             + G  +N 
Sbjct: 157 AEKMGQNLNR 166

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 97.5 bits (244), Expect = 2e-24
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 92  NDEGYTPLMEAAREGHEEMVCVLLQKGA-KINAHTEETQETALTLACCGGFLDVADFLLK 150
           + E    +    REG+   V + L      +N   +    + L  AC  G   V + L+ 
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDH-GFSPLHWACREGRSAVVEMLIM 60

Query: 151 NGANIEL---GASTPLMEAAQEGHLELVRYLLDSGA 183
            GA I +   G  TPL  AA  GH ++V+ LL   A
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 161 TPLMEAAQEGHLELVRYLLDSGAQEMQTK 189
             +    +EG+   VR  LD+   ++   
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQG 35

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  155 bits (395), Expect = 2e-45
 Identities = 51/208 (24%), Positives = 79/208 (37%), Gaps = 34/208 (16%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSF-ESPLTLAACGGHVDLALLLIERGANI 52
              L  A                  VN   +    +PL  A      D+  LL+  GA+ 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 53  EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
                   +  +P  LAA  G V L  L + +GA++ E +  G+T  MEAA  G  + + 
Sbjct: 66  VLRK---KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 113 VLLQKGAKINAHTEETQE---------TALTLACCGGFLDVADFLL-KNGANIELGA--- 159
            L ++GA +N   +  ++         TAL  A   G ++V   LL + GA++       
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 160 STPLMEAAQEGH----LELVRYLLDSGA 183
              L+ A           +   LLD GA
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGA 210

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  153 bits (388), Expect = 2e-44
 Identities = 52/206 (25%), Positives = 75/206 (36%), Gaps = 30/206 (14%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
            +P  LAA  G              VN       +    AA  G V     L +RGAN+ 
Sbjct: 73  ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132

Query: 54  E-------VNMPTDSFESPLTLAACGGHVDLA-LLLIERGANIEEVNDEGYTPLMEAARE 105
                            + L  AA  GHV++  +LL E GA++   ++ G   L+ A   
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 192

Query: 106 GH----EEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLL-KNGANIELGAS 160
                 E +  +LL  GA +N    E  +T L LA     L +   LL +    I    S
Sbjct: 193 SDDSDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251

Query: 161 ---TPLMEAAQEGHLELVRYLLDSGA 183
              T L+ A +    ++   L   GA
Sbjct: 252 DGKTALLLAVELKLKKIAELLCKRGA 277

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  122 bits (309), Expect = 7e-33
 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 10/147 (6%)

Query: 16  GGHVNMPTDSFESPLTLAACGGHVDLA-LLLIERGANIEEVNMPTDSFESPLTLAACGGH 74
                       + L  AA  GHV++  +LL E GA++   +   +   + L  A     
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD---NMGRNALIHALLSSD 194

Query: 75  VDLAL----LLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL-QKGAKINAHTEETQ 129
                    LL++ GA++    + G TPL+ A  + H  +V  LL Q+  +IN    +  
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD-G 253

Query: 130 ETALTLACCGGFLDVADFLLKNGANIE 156
           +TAL LA       +A+ L K GA+ +
Sbjct: 254 KTALLLAVELKLKKIAELLCKRGASTD 280

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  112 bits (284), Expect = 3e-29
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 22/134 (16%)

Query: 9   PLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLAL----LLIERGA 50
            L  AA  GH              VN   +   + L  A              LL++ GA
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

Query: 51  NIEEVNMPTDSFESPLTLAACGGHVDLA-LLLIERGANIEEVNDEGYTPLMEAAREGHEE 109
           ++       +  ++PL LA    H+ L   LL +    I + + +G T L+ A     ++
Sbjct: 211 DVNVRG---ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267

Query: 110 MVCVLLQKGAKINA 123
           +  +L ++GA  + 
Sbjct: 268 IAELLCKRGASTDC 281

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  107 bits (269), Expect = 4e-27
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 92  NDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN 151
             E    L++A +    ++V  LL+ GA +N   EE   T L  A      D+ + LL++
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 152 GANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
           GA+  L     +TP + AA  G ++L++  L  GA
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.3 bits (163), Expect = 1e-12
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 23/103 (22%)

Query: 9   PLTLAACGGH-----------------VNMPTDSFESPLTLAACGGHVDLA-LLLIERGA 50
            L  A                      VN+  +  ++PL LA    H+ L   LL +   
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244

Query: 51  NIEEVNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVN 92
            I +    TDS  ++ L LA       +A LL +RGA+ +  +
Sbjct: 245 EIND----TDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 14/65 (21%)

Query: 7   ESPLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANI 52
           ++PL LA    H              +N      ++ L LA       +A LL +RGA+ 
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279

Query: 53  EEVNM 57
           +  ++
Sbjct: 280 DCGDL 284

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  151 bits (383), Expect = 7e-45
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 10/159 (6%)

Query: 29  PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
              +    GH    +      A++          E+P   AA          L+E   ++
Sbjct: 17  EYLIEWKDGHSPSWVPSSYIAADVVSEY------ETPWWTAARKADEQALSQLLE-DRDV 69

Query: 89  EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
           + V++ G T L+  A  G ++ V +L + GA ++        TAL +A      +V + L
Sbjct: 70  DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129

Query: 149 LKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQ 184
           ++ GA+IE+      T L  A +          +  G +
Sbjct: 130 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  119 bits (302), Expect = 6e-33
 Identities = 39/186 (20%), Positives = 62/186 (33%), Gaps = 36/186 (19%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
              +    GH             V      +E+P   AA          L+E   +++ V
Sbjct: 17  EYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLLE-DRDVDAV 72

Query: 56  NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDE-GYTPLMEAAREGHEEMVCVL 114
           +   ++  + L   A  G      LL E GA+++  +   G T L  AA     E+V  L
Sbjct: 73  D---ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129

Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLEL 174
           ++ GA I    E    TAL LA            ++ G  I              G  ++
Sbjct: 130 VELGADIEVEDERGL-TALELAREILKTTPKGNPMQFGRRI--------------GLEKV 174

Query: 175 VRYLLD 180
           +  L  
Sbjct: 175 INVLEG 180

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  111 bits (279), Expect = 2e-29
 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 14/130 (10%)

Query: 7   ESPLTLAACGGH------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
           E+P   AA                V+   ++  + L   A  G      LL E GA+++ 
Sbjct: 45  ETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
            +       + L +AA     ++   L+E GA+IE  ++ G T L  A            
Sbjct: 105 RD--MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162

Query: 115 LQKGAKINAH 124
           +Q G +I   
Sbjct: 163 MQFGRRIGLE 172

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 91.0 bits (227), Expect = 4e-22
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 8/102 (7%)

Query: 85  GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDV 144
                    EG    +   ++GH           A + +      ET    A        
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQA 59

Query: 145 ADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
              LL+   +++       T L+  A  G  + VR L ++GA
Sbjct: 60  LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 100

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  153 bits (388), Expect = 2e-44
 Identities = 46/202 (22%), Positives = 67/202 (33%), Gaps = 27/202 (13%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE- 54
            L LAA  G              V +      + L LA        A +L++   +    
Sbjct: 48  ALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD 107

Query: 55  ---------VNMPTDSFESPLTLAA-CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAR 104
                     +   D+  +P  + +      +      +    +E  N +G+TPL  A  
Sbjct: 108 ASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI 167

Query: 105 EGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---T 161
               EMV +L   GA +N        T L LA       V + LLK GA+         T
Sbjct: 168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT 227

Query: 162 PLMEAAQEGHLELVRYLLDSGA 183
           PL  A    +  L R L   GA
Sbjct: 228 PLGSALLRPNPILARLLRAHGA 249

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  151 bits (384), Expect = 7e-44
 Identities = 41/181 (22%), Positives = 58/181 (32%), Gaps = 16/181 (8%)

Query: 19  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
               T+  ++ L LA    H      L+   A  E +++  D  ++ L LAA  G     
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 79  LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEET---------- 128
             L   GA +      G+T L  A R       CVLLQ          +T          
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 129 ---QETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSG 182
                 A   +      +           +E       TPL  A      E+VR L D+G
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 183 A 183
           A
Sbjct: 182 A 182

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  135 bits (342), Expect = 1e-37
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 9/168 (5%)

Query: 18  HVNMPTDSFESPLTLAA-CGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVD 76
             +   D+  +P  + +      +      +    +E  N       +PL +A      +
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN---YDGHTPLHVAVIHKDAE 172

Query: 77  LALLLIERGANIEEV-NDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTL 135
           +  LL + GA++ +     G TPL  A       ++ +LL+ GA   A       T L  
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG-GRTPLGS 231

Query: 136 ACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLD 180
           A       +A  L  +GA          +P   +  +   +      +
Sbjct: 232 ALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  133 bits (338), Expect = 4e-37
 Identities = 36/215 (16%), Positives = 66/215 (30%), Gaps = 38/215 (17%)

Query: 3   TDSFESPLTLAACGGH----------------VNMPTDSFESPLTLAACGGHVDLALLLI 46
           T+  ++ L LA    H                +++  D  ++ L LAA  G       L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 47  ERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTP-------- 98
             GA +           + L LA        A +L++   +      + Y          
Sbjct: 66  AAGAGVLVAE---RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 99  ------LMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNG 152
                  +++      E          ++ A   +   T L +A      ++   L   G
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD-GHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 153 ANI----ELGASTPLMEAAQEGHLELVRYLLDSGA 183
           A++         TPL  A +     ++  LL +GA
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  123 bits (310), Expect = 5e-33
 Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 3/137 (2%)

Query: 16  GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
              +        +PL +A      ++  LL + GA++ +         +PL LA      
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE--PTCGRTPLHLAVEAQAA 205

Query: 76  DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTL 135
            +  LL++ GA+       G TPL  A    +  +  +L   GA       +   +  + 
Sbjct: 206 SVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKL-SPCSS 264

Query: 136 ACCGGFLDVADFLLKNG 152
           +      D  D   +  
Sbjct: 265 SGSDSDSDNRDEGDEYD 281

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  149 bits (379), Expect = 4e-44
 Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 7   ESPLTLAACGGH-------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPT 59
           E    +              N       +PL +A   G  +    L+E    +E+ +   
Sbjct: 9   EIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD--- 65

Query: 60  DSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA 119
               + L  A     + +A  L+ +G+N+   +  G TPLM +   G+ EM   LL+ GA
Sbjct: 66  IEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125

Query: 120 KINAHTEETQETALTLACCGGFLDVADFLLKNGANIE----LGASTPLMEAAQEGHLELV 175
            +N       ET L +A   G  ++   LL+ GA+I      G  T    A   G  E++
Sbjct: 126 NVND-RNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTG-LTAEASARIFGRQEVI 183

Query: 176 RYLLD 180
           +   +
Sbjct: 184 KIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  133 bits (338), Expect = 4e-38
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 15/161 (9%)

Query: 27  ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
           E    +            L     +            +PL +A   G  +    L+E   
Sbjct: 9   EIVEKIKDEKSINQNLDFLRNYRDSYNR---------TPLMVACMLGMENAIDKLVENFD 59

Query: 87  NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVAD 146
            +E+ + EG T L+ A +     +   LL KG+ +N       +T L  +   G+ +++ 
Sbjct: 60  KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFS-GKTPLMWSIIFGYSEMSY 118

Query: 147 FLLKNGANIE----LGASTPLMEAAQEGHLELVRYLLDSGA 183
           FLL++GAN+      G  TPL+ A++ G  E+V+ LL+ GA
Sbjct: 119 FLLEHGANVNDRNLEG-ETPLIVASKYGRSEIVKKLLELGA 158

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  117 bits (295), Expect = 1e-31
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 17/158 (10%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
           PL +A   G              +        + L  A     + +A  L+ +G+N+   
Sbjct: 38  PLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK 97

Query: 56  NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
           +    S ++PL  +   G+ +++  L+E GAN+ + N EG TPL+ A++ G  E+V  LL
Sbjct: 98  D---FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154

Query: 116 QKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGA 153
           + GA I+A       TA   A   G  +V     +   
Sbjct: 155 ELGADISARDLT-GLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 49.3 bits (119), Expect = 2e-07
 Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 15/70 (21%)

Query: 118 GAKINAHTEETQETALTLACCGGFLDVADFLL----KNGANIELGASTPLMEAAQEGHLE 173
           G+ ++ +     E    +          DFL                TPLM A   G   
Sbjct: 1   GSHMDKN----GEIVEKIKDEKSINQNLDFLRNYRDSYN-------RTPLMVACMLGMEN 49

Query: 174 LVRYLLDSGA 183
            +  L+++  
Sbjct: 50  AIDKLVENFD 59

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  149 bits (379), Expect = 1e-43
 Identities = 49/201 (24%), Positives = 77/201 (38%), Gaps = 21/201 (10%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGA-NI 52
           E+ L LAA                  N+  +   +PL  A       +  +LI   A ++
Sbjct: 26  ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 85

Query: 53  EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
           +          +PL LAA      +   LI   A++  V+D G + L  AA   + +   
Sbjct: 86  DARM---HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 142

Query: 113 VLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQE 169
           VLL+ GA  +      +ET L LA   G  + A  LL + AN ++       P   A + 
Sbjct: 143 VLLKNGANKDMQNNR-EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 201

Query: 170 GHLELVRYLLDSGAQEMQTKH 190
            H ++VR L +         H
Sbjct: 202 MHHDIVRLLDEYNLVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  137 bits (348), Expect = 3e-39
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 7/152 (4%)

Query: 36  GGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEG 95
           G    +    I +GA++   N    + E+ L LAA     D A  L+E  A+    ++ G
Sbjct: 1   GDAPAVISDFIYQGASLH--NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMG 58

Query: 96  YTPLMEAAREGHEEMVCVLLQKGAK-INAHTEETQETALTLACCGGFLDVADFLLKNGAN 154
            TPL  A     + +  +L++  A  ++A   +   T L LA       + + L+ + A+
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLDARMHD-GTTPLILAARLAVEGMLEDLINSHAD 117

Query: 155 IELGA---STPLMEAAQEGHLELVRYLLDSGA 183
           +        + L  AA   +++    LL +GA
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 149

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 82.1 bits (204), Expect = 2e-18
 Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 32/122 (26%)

Query: 72  GGHVDLALLLIERGANIE-EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQE 130
           G    +    I +GA++  + +  G T L  AAR    +    LL+  A  N        
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD----- 55

Query: 131 TALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQEMQTKH 190
                                G        TPL  A       + + L+ + A ++  + 
Sbjct: 56  -------------------NMG-------RTPLHAAVSADAQGVFQILIRNRATDLDARM 89

Query: 191 ID 192
            D
Sbjct: 90  HD 91

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  148 bits (376), Expect = 1e-43
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 16/168 (9%)

Query: 27  ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
            + L  A       +  +L +    ++EV+       +PL +A     +++A  LI+RGA
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQVDEVD---TEGNTPLNIAVHNNDIEIAKALIDRGA 63

Query: 87  NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAK-INAHTEETQETALTLACCGGFLDVA 145
           +I   N    +P + A  +G  E++  +L+     +N H       AL  A   G +D  
Sbjct: 64  DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY-GGNALIPAAEKGHIDNV 122

Query: 146 DFLLKNG-ANIE----LGASTPLMEAA-----QEGHLELVRYLLDSGA 183
             LL++G  +I+     G  T L+EA       + + ++V+ L+++GA
Sbjct: 123 KLLLEDGREDIDFQNDFG-YTALIEAVGLREGNQLYQDIVKLLMENGA 169

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  142 bits (361), Expect = 2e-41
 Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 29/197 (14%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
            + L  A                  V+       +PL +A     +++A  LI+RGA+I 
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGA-NIEEVNDEGYTPLMEAAREGHEEMVC 112
             N      +SP   A   G  ++   +++    ++ + N  G   L+ AA +GH + V 
Sbjct: 67  LQN---SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123

Query: 113 VLLQKG-AKINAHTEETQETALTLACCG-----GFLDVADFLLKNGANIEL----GASTP 162
           +LL+ G   I+   +    TAL  A         + D+   L++NGA+  +    G  T 
Sbjct: 124 LLLEDGREDIDFQNDFGY-TALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSG-RTA 181

Query: 163 LMEAAQEGHLELVRYLL 179
           +  A Q+G+ E+ + L 
Sbjct: 182 MDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  107 bits (269), Expect = 6e-28
 Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 24/164 (14%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGA-NI 52
            +PL +A                  +N+     +SP   A   G  ++   +++    ++
Sbjct: 40  NTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL 99

Query: 53  EEVNMPTDSFESPLTLAACGGHVDLALLLIERG-ANIEEVNDEGYTPLMEAA-----REG 106
            + N       + L  AA  GH+D   LL+E G  +I+  ND GYT L+EA       + 
Sbjct: 100 NKHN---RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156

Query: 107 HEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLK 150
           ++++V +L++ GA  +        TA+  A   G+ +++  L +
Sbjct: 157 YQDIVKLLMENGADQSIKDNS-GRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 99.1 bits (248), Expect = 7e-25
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 92  NDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN 151
             E    L  A +   +++  +L     +++   +    T L +A     +++A  L+  
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDE-VDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 152 GANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHID 192
           GA+I L  S   +P + A  +G  E++ Y+L     ++   +  
Sbjct: 62  GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY 105

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  149 bits (379), Expect = 2e-43
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 16/180 (8%)

Query: 7   ESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPL 66
           E    + +                 +    GH    +      A++          E+P 
Sbjct: 2   EVNKIIGSRTAGEGA------MEYLIEWKDGHSPSWVPSSYIAADVVSEY------ETPW 49

Query: 67  TLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTE 126
             AA          L+E   +++ V++ G T L+  A  G ++ V +L + GA ++    
Sbjct: 50  WTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 108

Query: 127 ETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
               TAL +A      +V + L++ GA+IE+      T L  A +          +  G 
Sbjct: 109 RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGR 168

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  136 bits (345), Expect = 2e-38
 Identities = 33/189 (17%), Positives = 60/189 (31%), Gaps = 23/189 (12%)

Query: 7   ESPLTLAACGGH------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
           E+P   AA                V+   ++  + L   A  G      LL E GA+++ 
Sbjct: 46  ETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
            +       + L +AA     ++   L+E GA+IE  ++ G T L  A            
Sbjct: 106 RD--MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 163

Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLEL 174
           +Q G +I       +   +       + +V + + K G                +   + 
Sbjct: 164 MQFGRRIGLE----KVINVLEGQVFEYAEVDEIVEKRGKG-----KDVEYLVRWKDGGDC 214

Query: 175 VRYLLDSGA 183
                   A
Sbjct: 215 EWVKGVHVA 223

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  102 bits (257), Expect = 9e-26
 Identities = 27/179 (15%), Positives = 49/179 (27%), Gaps = 30/179 (16%)

Query: 9   PLTLAACGGHVNM--------------PTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
            L   A  G                        + L +AA     ++   L+E GA+IE 
Sbjct: 80  ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 139

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
            +   +   + L LA            ++ G  I     E    ++E     + E+  ++
Sbjct: 140 ED---ERGLTALELAREILKTTPKGNPMQFGRRI---GLEKVINVLEGQVFEYAEVDEIV 193

Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI-ELGASTPLMEAAQEGHL 172
            ++G           +    L       D       + A          L  A  E  +
Sbjct: 194 EKRGKG---------KDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYEDGLEYAVAESVI 243

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  150 bits (382), Expect = 2e-43
 Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 16/179 (8%)

Query: 29  PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
              L    G        + +    +          +    A   G  +  L L+ERGA+I
Sbjct: 11  NEQLKRWIGSETDLEPPVVKRKKTKV----KFDDGAVFLAACSSGDTEEVLRLLERGADI 66

Query: 89  EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
              N +G T L +A  + + +MV  L++ GA IN    E     L  A   G+LD+A++L
Sbjct: 67  NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE-GWIPLHAAASCGYLDIAEYL 125

Query: 149 LKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTK--------HIDILEF 196
           +  GA++    S   TPL  A +E   EL++  ++    +++            D  ++
Sbjct: 126 ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQW 184

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  139 bits (352), Expect = 6e-39
 Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 23/189 (12%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
              L    G                +      +    A   G  +  L L+ERGA+I   
Sbjct: 11  NEQLKRWIGSETDLEPPVVKRKKTKV-KFDDGAVFLAACSSGDTEEVLRLLERGADINYA 69

Query: 56  NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
           N       + L  A    +VD+   L+E GANI + ++EG+ PL  AA  G+ ++   L+
Sbjct: 70  N---VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI 126

Query: 116 QKGAKINAHTEETQETALTLACCGGFLDVADFLL-KNGANIELGASTPLMEAAQEGHLEL 174
            +GA + A   E  +T L +A      ++    + + G +IE        E  +    + 
Sbjct: 127 SQGAHVGAVNSE-GDTPLDIAEEEAMEELLQNEVNRQGVDIE----AARKEEERIMLRDA 181

Query: 175 VRYLLDSGA 183
            ++L     
Sbjct: 182 RQWLNSGHI 190

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  138 bits (350), Expect = 1e-38
 Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 28/193 (14%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
            L  A    +             +N P +    PL  AA  G++D+A  LI +GA++  V
Sbjct: 76  ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135

Query: 56  NMPTDSFESPLTLAACGGHVDLALLLIER-GANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
           N      ++PL +A      +L    + R G +IE           E  R    +    L
Sbjct: 136 N---SEGDTPLDIAEEEAMEELLQNEVNRQGVDIE-------AARKEEERIMLRDARQWL 185

Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGH 171
                    H + +  TAL +A   G+ +V   L++   ++ +      TPL  AA  G 
Sbjct: 186 NSGHINDVRHAK-SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244

Query: 172 LELVRYLLDSGAQ 184
            E  R L+++   
Sbjct: 245 EEACRILVENLCD 257

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  126 bits (319), Expect = 4e-34
 Identities = 37/192 (19%), Positives = 59/192 (30%), Gaps = 28/192 (14%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIER-GANIEE 54
           PL  AA  G+             V       ++PL +A      +L    + R G +IE 
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
                                D    L     N       G T L  AA +G+ E++ +L
Sbjct: 169 ----------ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGH 171
           +Q    +N    +   T L  A   G  +    L++N  ++E       T    A ++  
Sbjct: 219 IQARYDVNIKDYD-GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277

Query: 172 LELVRYLLDSGA 183
             L         
Sbjct: 278 GYLEELQKKQNL 289

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  112 bits (284), Expect = 4e-29
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 11/157 (7%)

Query: 7   ESPLTLAACGGH-------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPT 59
           ++PL +A            VN      E+           D    L     N        
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA--- 196

Query: 60  DSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA 119
            S  + L +AA  G+ ++  LLI+   ++   + +G+TPL  AA  G EE   +L++   
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256

Query: 120 KINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
            + A  +   +TA  +A       + +   K      
Sbjct: 257 DMEAVNKV-GQTAFDVADEDILGYLEELQKKQNLLHS 292

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 97.6 bits (244), Expect = 2e-23
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 3/112 (2%)

Query: 16  GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
             +      S  + L +AA  G+ ++  LLI+   ++   +       +PL  AA  G  
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD---YDGWTPLHAAAHWGKE 245

Query: 76  DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEE 127
           +   +L+E   ++E VN  G T    A  +    +  +  ++    +   E+
Sbjct: 246 EACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 87.2 bits (217), Expect = 9e-20
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 88  IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF 147
           ++  + +           G E  +   + K  K     ++        AC  G  +    
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDD--GAVFLAACSSGDTEEVLR 58

Query: 148 LLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
           LL+ GA+I        T L +A  + ++++V++L+++GA
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  145 bits (370), Expect = 4e-43
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 23  TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLI 82
            + + + L  AA  G ++    L++   N+   N       + L +   G + ++A  L+
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQN---GFGRTALQVMKLG-NPEIARRLL 57

Query: 83  ERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFL 142
            RGAN +  +  G+  + +AAR G  + +  LL+  A +N    E     L LA   G L
Sbjct: 58  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE-GNLPLHLAAKEGHL 116

Query: 143 DVADFLLKNGA-NIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
            V +FL+K+ A N+        T    A   G  E+V  +  +GA
Sbjct: 117 RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 93.6 bits (234), Expect = 3e-23
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 91  VNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLK 150
           + +     L  AA  G  E +  LLQ    +NA       TAL +   G   ++A  LL 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKLGN-PEIARRLLL 58

Query: 151 NGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
            GAN +L        + +AA+ G L+ ++ LL+  A
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  148 bits (377), Expect = 4e-43
 Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 27  ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
           E+ L LAA     D A  L+E  A+    N+  +   +PL  A       +  +LI   A
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114

Query: 87  -NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVA 145
            +++    +G TPL+ AAR   E M+  L+   A +NA  +   ++AL  A     +D A
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL-GKSALHWAAAVNNVDAA 173

Query: 146 DFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
             LLKNGAN ++  +   TPL  AA+EG  E  + LLD  A
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 214

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  146 bits (372), Expect = 2e-42
 Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 19/193 (9%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           E+ L LAA                  N+  +   +PL  A       +  +LI   A   
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT-- 115

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           +++       +PL LAA      +   LI   A++  V+D G + L  AA   + +   V
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 175

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEG 170
           LL+ GA  +      +ET L LA   G  + A  LL + AN ++       P   A +  
Sbjct: 176 LLKNGANKDMQNNR-EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 234

Query: 171 HLELVRYLLDSGA 183
           H ++VR L     
Sbjct: 235 HHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  142 bits (362), Expect = 6e-41
 Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 14/179 (7%)

Query: 9   PLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL 68
           PL +A+C G                       +    I +GA++   N    + E+ L L
Sbjct: 13  PLMIASCSGGG-------LETGNSEEEEDAPAVISDFIYQGASLH--NQTDRTGETALHL 63

Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAK-INAHTEE 127
           AA     D A  L+E  A+    ++ G TPL  A     + +  +L++  A  ++A   +
Sbjct: 64  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123

Query: 128 TQETALTLACCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDSGA 183
              T L LA       + + L+ + A++        + L  AA   +++    LL +GA
Sbjct: 124 -GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  124 bits (314), Expect = 6e-34
 Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 18/163 (11%)

Query: 7   ESPLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANI 52
            +PL  A                   ++       +PL LAA      +   LI   A++
Sbjct: 91  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 150

Query: 53  EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
             V+   D  +S L  AA   +VD A++L++ GAN +  N+   TPL  AAREG  E   
Sbjct: 151 NAVD---DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK 207

Query: 113 VLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI 155
           VLL   A  +  T+        +A      D+   L     + 
Sbjct: 208 VLLDHFANRDI-TDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  101 bits (254), Expect = 3e-25
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 16/131 (12%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
            +PL LAA                 VN   D  +S L  AA   +VD A++L++ GAN +
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 184

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
             N   +  E+PL LAA  G  + A +L++  AN +  +     P   A    H ++V +
Sbjct: 185 MQN---NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 241

Query: 114 LLQKGAKINAH 124
           L  +    + H
Sbjct: 242 LDLEHHHHHHH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 92.9 bits (232), Expect = 4e-22
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 16/113 (14%)

Query: 87  NIEEVNDEGYTPLMEAAREG-------------HEEMVCVLLQKGAKINAHTEETQETAL 133
           ++     +G+TPLM A+  G                ++   + +GA ++  T+ T ETAL
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 134 TLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
            LA      D A  LL+  A+  +  +   TPL  A       + + L+ + A
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.6 bits (148), Expect = 8e-11
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 16/99 (16%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           +S L  AA   +              +M  +  E+PL LAA  G  + A +L++  AN +
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 217

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
             +        P  +A    H D+  LL     +    +
Sbjct: 218 ITD---HMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  148 bits (375), Expect = 5e-43
 Identities = 45/207 (21%), Positives = 76/207 (36%), Gaps = 29/207 (14%)

Query: 7   ESPLTLAACGGH-----------------VNMPTDSFESPLTLAACGGHVDLALLLIERG 49
           +S L LA                      +N   +  ++PL LA      ++A  L+  G
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 50  ANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN------IEEVNDEGYTPLMEAA 103
            + E  +       +PL LA   G +    +L +          ++  N  G+T L  A+
Sbjct: 69  CDPELRD---FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125

Query: 104 REGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---S 160
             G+  +V +L+  GA +NA       TAL LA      D+   LLK GA++        
Sbjct: 126 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY 185

Query: 161 TPLMEAAQEGHLELVRYLLDSGAQEMQ 187
           +P           + + L     + +Q
Sbjct: 186 SPYQLTWGRPSTRIQQQLGQLTLENLQ 212

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  107 bits (270), Expect = 9e-28
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 16  GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
              +     +  + L LA+  G++ +  LL+  GA++        +  + L LA    + 
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE--PCNGRTALHLAVDLQNP 164

Query: 76  DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTL 135
           DL  LL++ GA++  V  +GY+P           +   L Q   +      E+ E   + 
Sbjct: 165 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES-EDEESY 223

Query: 136 ACCGGFLDVAD 146
                F +  +
Sbjct: 224 DTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 92.6 bits (231), Expect = 3e-22
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 89  EEVNDEGYTPLMEAAREGH----EEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDV 144
           +++ ++G + L  A          E++  +    A +N      Q T L LA      ++
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEI 60

Query: 145 ADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGAQEMQTKHID 192
           A+ LL  G + EL     +TPL  A ++G L  V  L  S         + 
Sbjct: 61  AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK 111

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  142 bits (362), Expect = 3e-42
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 7/138 (5%)

Query: 49  GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHE 108
              I  +     S ++ L  AA  G V+    L+E GA+   +N  G  P+      G  
Sbjct: 2   SPGIHMLG---GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSA 57

Query: 109 EMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLME 165
           ++  +LL  GA+ N     T    +  A   GFLD    L + GA +++  +    P+  
Sbjct: 58  QVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117

Query: 166 AAQEGHLELVRYLLDSGA 183
           A ++GH ++ RYL  +  
Sbjct: 118 AEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  126 bits (320), Expect = 4e-36
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 6/140 (4%)

Query: 16  GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
              ++M   S ++ L  AA  G V+    L+E GA+   +N        P+ +    G  
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN---RFGRRPIQVMMM-GSA 57

Query: 76  DLALLLIERGANIEEVNDEGYT-PLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALT 134
            +A LL+  GA     +    T P+ +AAREG  + + VL + GA+++      +   + 
Sbjct: 58  QVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR-LPVD 116

Query: 135 LACCGGFLDVADFLLKNGAN 154
           LA   G  D+A +L     +
Sbjct: 117 LAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  106 bits (267), Expect = 2e-28
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 16/126 (12%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           ++ L  AA  G               N        P+ +   G    +A LL+  GA   
Sbjct: 13  DAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG-SAQVAELLLLHGAEPN 71

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
             +    +   P+  AA  G +D  ++L   GA ++  +  G  P+  A  +GH ++   
Sbjct: 72  CAD--PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY 129

Query: 114 LLQKGA 119
           L     
Sbjct: 130 LHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 46.7 bits (112), Expect = 9e-07
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)

Query: 152 GANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQ 184
              I +        L  AA  G +E VR LL++GA 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD 37

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  148 bits (376), Expect = 8e-42
 Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 23/188 (12%)

Query: 16  GGHVNMPTDSFESPLTLAACGGHVDLALLLIER-----GANIEEVNMPTDSFESPLTLAA 70
           G        + E+PL  A    + +   L+++         ++  N       S L  A 
Sbjct: 163 GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYAN---KQGNSHLHWAI 219

Query: 71  CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA------- 123
                D+A+  +E G ++   ++E   PL  + R     +   LLQK             
Sbjct: 220 LINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN 279

Query: 124 -----HTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELV 175
                         +  A      +V   L +    +       +   ++  ++    + 
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339

Query: 176 RYLLDSGA 183
           R  L   A
Sbjct: 340 RMKLAPSA 347

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  140 bits (356), Expect = 7e-39
 Identities = 34/216 (15%), Positives = 76/216 (35%), Gaps = 40/216 (18%)

Query: 7   ESPLTLAACGGHV-----------NMPTDSFESPLTLAACGGHVDLALLLIERGANIEE- 54
            + L LA   G V                  + P+ LA      DL + L+E      + 
Sbjct: 54  CTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQM 113

Query: 55  -----------------VNMPTDSFESPLTLAACGG--HVDLALLLIERGANIEEVNDEG 95
                             ++     ++ L      G  ++++  +L++ GA+    +   
Sbjct: 114 PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKAD 173

Query: 96  YTPLMEAAREGHEEMVCVLL-----QKGAKINAHTEETQETALTLACCGGFLDVADFLLK 150
            TPLM A    + E + +++     +   +++   ++   + L  A    + DVA   ++
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN-SHLHWAILINWEDVAMRFVE 232

Query: 151 NGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
            G ++ +     + PL  + +   + L + LL    
Sbjct: 233 MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD 268

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  135 bits (342), Expect = 8e-37
 Identities = 40/191 (20%), Positives = 65/191 (34%), Gaps = 30/191 (15%)

Query: 19  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
                D     + +AA  G  D    LIE G +    N       + L LA   G VD A
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQN---RFGCTALHLACKFGCVDTA 69

Query: 79  LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA----------HTEET 128
             L   G      +  G  P+  A      ++V  L++   +               E  
Sbjct: 70  KYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVN 127

Query: 129 Q----------ETALTLACCGG--FLDVADFLLKNGANIELGAS---TPLMEAAQEGHLE 173
           +          +TAL      G  +L++   L++ GA+         TPLM A +  + E
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE 187

Query: 174 LVRYLLDSGAQ 184
            +  ++D+   
Sbjct: 188 ALDLMMDTVPS 198

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  122 bits (308), Expect = 4e-32
 Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 19/163 (11%)

Query: 44  LLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAA 103
           +      N  + +   D     + +AA  G  D    LIE G +    N  G T L  A 
Sbjct: 5   MTDFPKLNRIKSD---DENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLAC 61

Query: 104 REGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPL 163
           + G  +    L   G   +       +  + LA      D+   L++           P 
Sbjct: 62  KFGCVDTAKYLASVGEVHSL---WHGQKPIHLAVMANKTDLVVALVEGAKERG---QMPE 115

Query: 164 MEAAQEGHLELVRYLLDSGAQEMQT----------KHIDILEF 196
               +    E+          + QT          +++++++ 
Sbjct: 116 SLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKI 158

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  118 bits (298), Expect = 1e-30
 Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 35/181 (19%)

Query: 7   ESPLTLAACGGH------------------VNMPTDSFESPLTLAACGGHVDLALLLIER 48
           E+PL  A    +                  ++       S L  A      D+A+  +E 
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM 233

Query: 49  GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVND-------------EG 95
           G ++   +   +    PL L+     V L   L+++                        
Sbjct: 234 GIDVNMED---NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVW 290

Query: 96  YTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI 155
              +  AA    +E++ +L +K  ++   +  T               V    L   A +
Sbjct: 291 LDFVPAAADPSKQEVLQLLQEKLDEVVR-SLNTGAGGAVKRKKKAAPAVKRMKLAPSAPV 349

Query: 156 E 156
            
Sbjct: 350 R 350

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  113 bits (285), Expect = 9e-29
 Identities = 20/151 (13%), Positives = 44/151 (29%), Gaps = 24/151 (15%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE- 54
            L  A                  VNM  +    PL L+     V L   L+++       
Sbjct: 214 HLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQ 273

Query: 55  ---------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE 105
                    V      +   +  AA     ++  LL E+   +    + G    ++  ++
Sbjct: 274 ACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKK 333

Query: 106 GHEEMVCVLLQKGAKINAHTEETQETALTLA 136
               +  + L   A +   +   +  +  ++
Sbjct: 334 AAPAVKRMKLAPSAPVRTRSRS-RARSSAVS 363

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  148 bits (375), Expect = 1e-41
 Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 20/189 (10%)

Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
             A G  VN       +PL LA       L   L++ GA+    N    S  S L  AA 
Sbjct: 152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN---KSERSALHQAAA 208

Query: 72  GGHVDLALLLIE---RGANIEEVNDEGYTPLMEAAREGHEEMVCV---LLQKGAKINAHT 125
                + + ++       +IEE++  G T LM  A     + V     L++KGAK++   
Sbjct: 209 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 268

Query: 126 EETQE-------TALTLACCGGFLDVADFLL-KNGANIELG---ASTPLMEAAQEGHLEL 174
              ++       TAL  A     + +  +L+ + G+N +       TP+M AAQEG +E+
Sbjct: 269 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 328

Query: 175 VRYLLDSGA 183
           V YL+  GA
Sbjct: 329 VMYLIQQGA 337

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  138 bits (349), Expect = 7e-38
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 35/209 (16%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIE---RGA 50
            +PL LA                    +   S  S L  AA      + + ++       
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226

Query: 51  NIEEVNMPTDSFESPLTLAACGGH---VDLALLLIERGANI--------EEVNDEGYTPL 99
           +IEE++    +  + L + A       V  A LL+E+GA +        +    +G T L
Sbjct: 227 DIEELD---RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 283

Query: 100 MEAAREGHEEMVCVLL-QKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELG 158
             AA+  +  +V  L+ +KG+  +   E+  +T + LA   G ++V  +L++ GA++E  
Sbjct: 284 HYAAQVSNMPIVKYLVGEKGSNKDKQDED-GKTPIMLAAQEGRIEVVMYLIQQGASVEAV 342

Query: 159 AS---TPLMEAAQEGHLELVRYLLDSGAQ 184
            +   T    A    H  +V        +
Sbjct: 343 DATDHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  132 bits (334), Expect = 9e-36
 Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 30/181 (16%)

Query: 29  PLTLAACGGHVDLALLLI--------ERGANIEEVNMPTDSFESPLTLAACGGHVDLALL 80
            L   A     + +  LI          GA++  ++       +PL LA       L   
Sbjct: 128 VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD---CDENTPLMLAVLARRRRLVAY 184

Query: 81  LIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQK---GAKINAHTEETQETALTLAC 137
           L++ GA+    N    + L +AA      M+  +L        I         TAL +  
Sbjct: 185 LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN-GMTALMIVA 243

Query: 138 CGGFLD---VADFLLKNGANIELGAS-----------TPLMEAAQEGHLELVRYLL-DSG 182
                D    A  L++ GA ++   +           T L  AAQ  ++ +V+YL+ + G
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303

Query: 183 A 183
           +
Sbjct: 304 S 304

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  120 bits (303), Expect = 3e-31
 Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 26/175 (14%)

Query: 7   ESPLTLAACGGH----------------VNMPTDSFESPLTLAACGGH---VDLALLLIE 47
            S L  AA                    +     +  + L + A       V  A LL+E
Sbjct: 200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVE 259

Query: 48  RGANIEEVNMPTDSF-----ESPLTLAACGGHVDLALLLI-ERGANIEEVNDEGYTPLME 101
           +GA ++               + L  AA   ++ +   L+ E+G+N ++ +++G TP+M 
Sbjct: 260 KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 319

Query: 102 AAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
           AA+EG  E+V  L+Q+GA + A       TA  LA      ++ D   +     E
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAVDATDH-TARQLAQANNHHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  114 bits (288), Expect = 3e-29
 Identities = 31/179 (17%), Positives = 52/179 (29%), Gaps = 26/179 (14%)

Query: 16  GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
               +    S +  L  A+  G++      ++  +              P       G+ 
Sbjct: 27  NRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLY------------PNPQGYGNGND 74

Query: 76  DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTL 135
            L            E   E    L   A  G   +   + ++   I         T L  
Sbjct: 75  FLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPRHN--RTVLHW 131

Query: 136 ACCGGFLDVADFLLKNGAN--IELGA---------STPLMEAAQEGHLELVRYLLDSGA 183
                  + ++ L+ + A   I  GA         +TPLM A       LV YL+ +GA
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA 190

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 90.4 bits (225), Expect = 1e-20
 Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 13/158 (8%)

Query: 38  HVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYT 97
           +  + +  +E      + +    S +  L  A+  G++              E+      
Sbjct: 13  NASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIK---------RQRNELQHYSLY 63

Query: 98  PLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL 157
           P  +    G++ +                E+    L     G    + + + +   NI  
Sbjct: 64  PNPQGYGNGNDFLGDFNHTNLQIPTEPEPESP-IKLHTEAAGS-YAITEPITRESVNIID 121

Query: 158 GAS--TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDI 193
                T L   A     E    L+   A+E      D+
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  144 bits (365), Expect = 1e-41
 Identities = 40/197 (20%), Positives = 75/197 (38%), Gaps = 24/197 (12%)

Query: 9   PLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
           PL  A                   +         PL  +      ++   L+ +  N+  
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIER--GANIEEVNDEGYTPLMEAAREGHEEMVC 112
            + P DS  +P  +A   G++++   L +R    ++ ++ ++G T L  A  +   E+  
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124

Query: 113 VLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI-----ELGASTPLMEAA 167
            L++ GA +    +   +  L  A   G L + + L   G +      + G  TPL  A 
Sbjct: 125 FLIENGASVRIKDKF-NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG-WTPLFHAL 182

Query: 168 QEGHLELVRYLLDS-GA 183
            EGH +    L++  GA
Sbjct: 183 AEGHGDAAVLLVEKYGA 199

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  121 bits (307), Expect = 3e-33
 Identities = 41/193 (21%), Positives = 77/193 (39%), Gaps = 26/193 (13%)

Query: 9   PLTLAACGGHV----------------NMPTDSFESPLTLAACGGHVDLALLLIERGANI 52
           PL  +                      + P DS  +P  +A   G++++   L +R    
Sbjct: 39  PLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP 98

Query: 53  EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
           + +N  T+   + L LA      +++  LIE GA++   +     PL  AA  G  +++ 
Sbjct: 99  D-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157

Query: 113 VLLQKG-AKINAHTEETQETALTLACCGGFLDVADFLL-KNGANIELGAS---TPLMEAA 167
           +L   G + +N   ++   T L  A   G  D A  L+ K GA  +L  +        A 
Sbjct: 158 LLCGLGKSAVNWQDKQ-GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216

Query: 168 QEGHLELVRYLLD 180
              + ++ ++ L+
Sbjct: 217 ---NEQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 87.9 bits (219), Expect = 2e-20
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 95  GYTPLMEAAREGH-EEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGA 153
              PL +A  E    ++  +L  K + +    ++     L  +      ++  FLL    
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQD-GRIPLHWSVSFQAHEITSFLLSKME 60

Query: 154 NIELGAS------TPLMEAAQEGHLELVRYLLDSGA 183
           N+ L         TP   A   G+LE+V+ L D   
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  141 bits (358), Expect = 2e-41
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 10/156 (6%)

Query: 29  PLTLAACGGHVD-LALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
            L+ AA  G V  +  LL     + + +N      ++ L +   G    +AL L+++GA+
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALN---RFGKTALQVMMFG-STAIALELLKQGAS 60

Query: 88  IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF 147
               +  G +P+ +AAR G  + + VL++ GA +N          + LA   G   V  F
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT-GALPIHLAVQEGHTAVVSF 119

Query: 148 LLKNGANIELGA---STPLMEAAQEGHLELVRYLLD 180
           L    +++        TPL  A Q G  +LV  L  
Sbjct: 120 LAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 91.7 bits (229), Expect = 1e-22
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 33/120 (27%)

Query: 65  PLTLAACGGHVD-LALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
            L+ AA  G V  +  LL     + + +N  G T L      G   +   LL++GA  N 
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV 63

Query: 124 HTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
                                      +G       ++P+ +AA+ G L+ ++ L++ GA
Sbjct: 64  QD------------------------TSG-------TSPVHDAARTGFLDTLKVLVEHGA 92

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 87.9 bits (219), Expect = 3e-21
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 16  GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
           G   N+   S  SP+  AA  G +D   +L+E GA++   +    +   P+ LA   GH 
Sbjct: 58  GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD---GTGALPIHLAVQEGHT 114

Query: 76  DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
            +   L    +++   +  G TPL  A + G +++V +L 
Sbjct: 115 AVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  141 bits (357), Expect = 2e-41
 Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 9/141 (6%)

Query: 46  IERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE 105
           +E  A         +     L  AA  G V+    L+E GAN    N  G  P+      
Sbjct: 1   MEPAAGSS-----MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM- 54

Query: 106 GHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TP 162
           G   +  +LL  GA+ N     T    +  A   GFLD    L + GA +++  +    P
Sbjct: 55  GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114

Query: 163 LMEAAQEGHLELVRYLLDSGA 183
           +  A + GH ++ RYL  +  
Sbjct: 115 VDLAEELGHRDVARYLRAAAG 135

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  141 bits (357), Expect = 3e-41
 Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 8/148 (5%)

Query: 29  PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
            L  AA  G V+    L+E GAN    N        P+ +   G    +A LL+  GA  
Sbjct: 15  WLATAAARGRVEEVRALLEAGANPNAPN---SYGRRPIQVMMMG-SARVAELLLLHGAEP 70

Query: 89  EEVNDEGYT-PLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF 147
              +    T P+ +AAREG  + + VL + GA+++      +   + LA   G  DVA +
Sbjct: 71  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR-LPVDLAEELGHRDVARY 129

Query: 148 LLKNGANIELGASTPLMEAAQEGHLELV 175
           L           S      A EG  ++ 
Sbjct: 130 LRAAAGGTR--GSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  117 bits (297), Expect = 2e-32
 Identities = 30/151 (19%), Positives = 48/151 (31%), Gaps = 22/151 (14%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
            L  AA  G               N P      P+ +   G    +A LL+  GA     
Sbjct: 15  WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG-SARVAELLLLHGAEPNCA 73

Query: 56  NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
           +    +   P+  AA  G +D  ++L   GA ++  +  G  P+  A   GH ++   L 
Sbjct: 74  D--PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 131

Query: 116 QKGAKINAHTEETQETALTLACCGGFLDVAD 146
                              +    G  D+ D
Sbjct: 132 AAAGGTRG------SNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.1 bits (113), Expect = 8e-07
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 149 LKNGANIEL-GASTPLMEAAQEGHLELVRYLLDSGAQ 184
           ++  A   +  ++  L  AA  G +E VR LL++GA 
Sbjct: 1   MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGAN 37

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  142 bits (361), Expect = 4e-41
 Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 16/182 (8%)

Query: 3   TDSFESPLTLAACGGH--------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
           TD  ++        G         V    +S ++PL  AA  G++      ++    +  
Sbjct: 42  TDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG 101

Query: 55  VNMPTDSFESPLTLAACGGHVDLA-LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
           ++    +  + L  A  GGH D+  +L  +    + + N  G T L  AA +G+ ++V +
Sbjct: 102 LD---KAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEG 170
           LL KGA+ +    E ++ A  +A       +        A   L          ++  E 
Sbjct: 159 LLAKGARTDLRNIE-KKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217

Query: 171 HL 172
           H 
Sbjct: 218 HH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  141 bits (358), Expect = 1e-40
 Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 13/181 (7%)

Query: 7   ESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPL 66
            +P  L    G +   TD  ++        G        +     + E     +S ++PL
Sbjct: 26  RTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLIPSNYVAEQA---ESIDNPL 77

Query: 67  TLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL-QKGAKINAHT 125
             AA  G++      ++    +  ++  G T L  A   GH+++V +L  Q   ++N   
Sbjct: 78  HEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQN 137

Query: 126 EETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSG 182
           +   +TAL  A   G+ D+   LL  GA  +L           A       L++    + 
Sbjct: 138 KL-GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD 196

Query: 183 A 183
           A
Sbjct: 197 A 197

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  133 bits (338), Expect = 1e-37
 Identities = 36/160 (22%), Positives = 56/160 (35%), Gaps = 15/160 (9%)

Query: 29  PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
            +  A           L     +I      TD  ++        G        +     +
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDI---IYITDMSDTNWWKGTSKGR-----TGLIPSNYV 66

Query: 89  EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
            E  +    PL EAA+ G+   +   L     +N   +    TAL  AC GG  D+ + L
Sbjct: 67  AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIVEML 125

Query: 149 LKN-GANIE----LGASTPLMEAAQEGHLELVRYLLDSGA 183
                  +     LG  T L  AA +G+ ++V+ LL  GA
Sbjct: 126 FTQPNIELNQQNKLG-DTALHAAAWKGYADIVQLLLAKGA 164

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 81.1 bits (201), Expect = 4e-18
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 95  GYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN 154
           G   +  A           L  +   I   T+   +T        G   +          
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDM-SDTNWWKGTSKGRTGLIPSNYVAEQA 70

Query: 155 IELGASTPLMEAAQEGHLELVRYLLDSGA 183
                  PL EAA+ G+L  +R  LD+  
Sbjct: 71  ES--IDNPLHEAAKRGNLSWLRECLDNRV 97

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  139 bits (354), Expect = 7e-41
 Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 10/154 (6%)

Query: 29  PLTLAACGGHVDLALLLIERGANIEEVNMPTDSF-ESPLTLAACGGHVDLALLLIERGAN 87
            L  AA  G  D   +L+  GA        TD    SPL LAA  GH     +L+  G +
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFT-----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 88  IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF 147
            +       TPL  AA EGH  +V VLL+ GA +NA  +  + TAL  A      +V + 
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVEL 118

Query: 148 LLKNGANIELGA---STPLMEAAQEGHLELVRYL 178
           L+K GA++   +    T    +   G+ +L   L
Sbjct: 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  122 bits (308), Expect = 4e-34
 Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 65  PLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
            L  AA  G  D   +L+  GA     +  G +PL  AA+ GH     VLL+ G   +A 
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 125 TEETQETALTLACCGGFLDVADFLLKNGANIE----LGASTPLMEAAQEGHLELVRYLLD 180
           T+    T L +A   G  ++ + LLK+GA++     L   T L  A +  H E+V  L+ 
Sbjct: 64  TKV-DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK-MTALHWATEHNHQEVVELLIK 121

Query: 181 SGA 183
            GA
Sbjct: 122 YGA 124

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 92.1 bits (230), Expect = 8e-23
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 94  EGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGA 153
           +    L+EAAR G ++ V +L+  GA      +    + L LA   G     + LL+ G 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 154 NI----ELGASTPLMEAAQEGHLELVRYLLDSGA 183
           +     ++   TPL  AA EGH  +V  LL  GA
Sbjct: 59  SRDARTKVD-RTPLHMAASEGHANIVEVLLKHGA 91

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  137 bits (349), Expect = 2e-40
 Identities = 54/122 (44%), Positives = 75/122 (61%), Gaps = 4/122 (3%)

Query: 65  PLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
           PL LAA  GH+++  LL+E GA++   +  G TPL  AAR GH E+V +LL+ GA +NA 
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 125 TEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDS 181
            +    T L LA   G L+V   LL+ GA++        TPL  AA+ GHLE+V+ LL++
Sbjct: 65  DKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

Query: 182 GA 183
           GA
Sbjct: 124 GA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  106 bits (268), Expect = 1e-28
 Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 16/124 (12%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
           PL LAA  GH             VN    +  +PL LAA  GH+++  LL+E GA++   
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 56  NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
           +    +  +PL LAA  GH+++  LL+E GA++   +  G TPL  AAR GH E+V +LL
Sbjct: 65  D---KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

Query: 116 QKGA 119
           + GA
Sbjct: 122 EAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  104 bits (262), Expect = 9e-28
 Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 4/92 (4%)

Query: 95  GYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN 154
           G TPL  AAR GH E+V +LL+ GA +NA  +    T L LA   G L+V   LL+ GA+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 155 IELGA---STPLMEAAQEGHLELVRYLLDSGA 183
           +        TPL  AA+ GHLE+V+ LL++GA
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  137 bits (347), Expect = 1e-39
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 9/161 (5%)

Query: 27  ESPLTLAACGGHVDLALLLIER-GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERG 85
           +  L  AA  G V+    L      N  ++        +PL  AA    V +   L++ G
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIE---GRQSTPLHFAAGYNRVSVVEYLLQHG 65

Query: 86  ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVA 145
           A++   +  G  PL  A   GH E+  +L++ GA +N      + T L  A   G  ++ 
Sbjct: 66  ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW-KFTPLHEAAAKGKYEIC 124

Query: 146 DFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
             LL++GA+        +TPL    ++G  ++   L    A
Sbjct: 125 KLLLQHGADPTKKNRDGNTPLD-LVKDGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  122 bits (310), Expect = 3e-34
 Identities = 44/139 (31%), Positives = 60/139 (43%), Gaps = 11/139 (7%)

Query: 49  GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIER-GANIEEVNDEGYTPLMEAAREGH 107
           GA            +  L  AA  G V+    L      N  ++     TPL  AA    
Sbjct: 1   GAMGNSEA------DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR 54

Query: 108 EEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE---LGASTPLM 164
             +V  LLQ GA ++A  +      L  AC  G  +VA+ L+K+GA +    L   TPL 
Sbjct: 55  VSVVEYLLQHGADVHAKDKG-GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 113

Query: 165 EAAQEGHLELVRYLLDSGA 183
           EAA +G  E+ + LL  GA
Sbjct: 114 EAAAKGKYEICKLLLQHGA 132

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  119 bits (300), Expect = 7e-33
 Identities = 43/161 (26%), Positives = 64/161 (39%), Gaps = 19/161 (11%)

Query: 7   ESPLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANI 52
           +  L  AA  G                        +PL  AA    V +   L++ GA++
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68

Query: 53  EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
              +        PL  A   GH ++A LL++ GA +   +   +TPL EAA +G  E+  
Sbjct: 69  HAKD---KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICK 125

Query: 113 VLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGA 153
           +LLQ GA       +   T L L    G  D+ D L  + A
Sbjct: 126 LLLQHGADPTKKNRD-GNTPLDLVKD-GDTDIQDLLRGDAA 164

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  134 bits (340), Expect = 6e-38
 Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 7/146 (4%)

Query: 44  LLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAA 103
            ++ +  +  +      +    L  AA  G +++    ++   +  + N+EG T L  A 
Sbjct: 3   SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI 62

Query: 104 REGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS--- 160
              +  +V  L+  GA +N+       T L  A       +   L+++GA I        
Sbjct: 63  CGANYSIVDFLITAGANVNSPDSH-GWTPLHCAASCNDTVICMALVQHGAAIFATTLSDG 121

Query: 161 -TPLMEAA--QEGHLELVRYLLDSGA 183
            T   +    +EG+ +   YL D   
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQ 147

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  123 bits (311), Expect = 1e-33
 Identities = 37/193 (19%), Positives = 60/193 (31%), Gaps = 29/193 (15%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
            L  AA  G               + P +   + L  A CG +  +   LI  GAN+   
Sbjct: 24  LLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP 83

Query: 56  NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVND-EGYTPLMEAA--REGHEEMVC 112
           +       +PL  AA      + + L++ GA I      +G T   +    REG+ +   
Sbjct: 84  D---SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCAT 140

Query: 113 VLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA-----STPLMEAA 167
            L      +          AL         ++     + G ++ +        T    AA
Sbjct: 141 YLADVEQSMGL-MNSGAVYALWDYSAEFGDEL---SFREGESVTVLRRDGPEETDWWWAA 196

Query: 168 QEGHLELV-RYLL 179
             G    V R   
Sbjct: 197 LHGQEGYVPRNYF 209

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 19/139 (13%), Positives = 34/139 (24%), Gaps = 21/139 (15%)

Query: 9   PLTLAACGGH-------------VNMPTDSF-ESPLTLAACG--GHVDLALLLIERGANI 52
           PL  AA                 +   T S   +          G+ D A  L +   ++
Sbjct: 90  PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM 149

Query: 53  EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
             +N         L   +     +L          +   +    T    AA  G E  V 
Sbjct: 150 GLMN---SGAVYALWDYSAEFGDEL-SFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205

Query: 113 V-LLQKGAKINAHTEETQE 130
                   ++     + + 
Sbjct: 206 RNYFGLFPRVKPQRSKVKH 224

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  134 bits (340), Expect = 6e-38
 Identities = 50/219 (22%), Positives = 82/219 (37%), Gaps = 43/219 (19%)

Query: 7   ESPLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANI 52
           ESPL LAA                  V+      E+ L +AA   +++ A++L+E    +
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63

Query: 53  --EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVND-------------EGYT 97
             E +       ++ L +A    +V+L   L+ RGA++                   G  
Sbjct: 64  VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123

Query: 98  PLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVA----DFLLKNGA 153
           PL  AA  G EE+V +L++ GA I A       T L +         A    + LL    
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSL-GNTVLHILILQPNKTFACQMYNLLLSYDG 182

Query: 154 NIELGAS---------TPLMEAAQEGHLELVRYLLDSGA 183
              L +          TP   A  EG++ + ++L+    
Sbjct: 183 GDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  118 bits (297), Expect = 1e-31
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 37/186 (19%)

Query: 7   ESPLTLAACGGH------------------VNMPTDSFESPLTLAACGGHVDLALLLIER 48
           E+ L +AA   +                  +       ++ L +A    +V+L   L+ R
Sbjct: 38  ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97

Query: 49  GANIEE----------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTP 98
           GA++             +      E PL+ AAC G  ++  LLIE GA+I   +  G T 
Sbjct: 98  GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157

Query: 99  LMEAAREGHEEMVC----VLLQKGAKINAHTEETQ-----ETALTLACCGGFLDVADFLL 149
           L     + ++   C    +LL      +  + E        T   LA   G + +   L+
Sbjct: 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217

Query: 150 KNGANI 155
           +   +I
Sbjct: 218 QKRKHI 223

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 85.7 bits (213), Expect = 9e-20
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 95  GYTPLMEAAREGHEEMVCVLL-QKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGA 153
             +PL+ AA+E   + +  LL  +G +++       ETAL +A     L+ A  L++   
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM-GETALHIAALYDNLEAAMVLMEAAP 61

Query: 154 NIELGAS--------TPLMEAAQEGHLELVRYLLDSGA 183
            +             T L  A    ++ LVR LL  GA
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA 99

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  132 bits (333), Expect = 2e-37
 Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 17/175 (9%)

Query: 25  SFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIER 84
           S    ++ AA  G  +  L L E+G   +E  + ++     L          +++ LI +
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 85  GANIEEVNDEGYTPLMEAAREGHE------EMVCVLLQKGAKINAHTEETQETALTLACC 138
           GA+I+    EG T      + G        E+  + L+KGA I A  +   +  +     
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP-YKIVVFKNIF 123

Query: 139 GGFLDVAD-------FLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
             F+D  +          ++G  + +      T L    +      ++ + D   
Sbjct: 124 NYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  110 bits (278), Expect = 2e-29
 Identities = 24/182 (13%), Positives = 50/182 (27%), Gaps = 33/182 (18%)

Query: 5   SFESPLTLAACGGHV----------------NMPTDSFESPLTLAACGGHVDLALLLIER 48
           S    ++ AA  G                   + ++     L          +++ LI +
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 49  GANIEEVNMPTDSFESPLTLAACGGHVD------LALLLIERGANIEEVNDEGYTPLMEA 102
           GA+I+          +       GG  D      L  + +E+GA+I  +       + + 
Sbjct: 65  GADIKSRT---KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121

Query: 103 AREGHEEMV-------CVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI 155
                 +          +  Q G ++    ++   TAL              +       
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLI-KDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180

Query: 156 EL 157
            L
Sbjct: 181 NL 182

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 7/113 (6%), Positives = 21/113 (18%), Gaps = 29/113 (25%)

Query: 7   ESPLTLAACGGH-------------------VNMPTDSFESPLTLAACGGHVDLA----- 42
            +       GG                    +      ++  +        VD       
Sbjct: 76  TTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPL 135

Query: 43  --LLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVND 93
             L+  + G  +   +       + L             ++ +         +
Sbjct: 136 YKLIFSQSGLQLLIKD---KWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  128 bits (325), Expect = 8e-37
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 12/142 (8%)

Query: 49  GANIEEVNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGH 107
           G +       T+   E+ L +A+  G +     L++ G++    +  G+TPL EA   GH
Sbjct: 1   GIDPF-----TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGH 55

Query: 108 EEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL----GASTPL 163
            ++V +LLQ  A +N    +  ++ L  A   G +D+   LL  GA+       G   P+
Sbjct: 56  LKVVELLLQHKALVNTTGYQ-NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG-LRPV 113

Query: 164 MEAAQEGHLELVRYLLDSGAQE 185
                E    L+     + +  
Sbjct: 114 DYTDDESMKSLLLLPEKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  100 bits (252), Expect = 4e-26
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 17/130 (13%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           E+ L +A+  G               N+   +  +PL  A   GH+ +  LL++  A + 
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
                    +SPL  AA  GHVD+  LL+  GA+   VN  G  P+     E  + ++ +
Sbjct: 71  TTG---YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL-L 126

Query: 114 LLQKGAKINA 123
           L +K    +A
Sbjct: 127 LPEKNESSSA 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  124 bits (313), Expect = 5e-35
 Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 16/139 (11%)

Query: 45  LIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAR 104
               G+++ +           L  AA  G  D   +L+  GA++   ++ G TPL  A  
Sbjct: 7   HHHHGSDLGK----------KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATA 56

Query: 105 EGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI----ELGAS 160
            GH E+V VLL+ GA +NA       T L LA   G L++A+ LLK+GA++    + G  
Sbjct: 57  HGHLEIVEVLLKNGADVNAVDAI-GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG-K 114

Query: 161 TPLMEAAQEGHLELVRYLL 179
           T    +   G+ +L   L 
Sbjct: 115 TAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 95.5 bits (239), Expect = 2e-24
 Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 7/105 (6%)

Query: 84  RGANIEEVND-EGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFL 142
           RG++    +  +    L+EAAR G ++ V +L+  GA +NA  E    T L LA   G L
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEY-GLTPLYLATAHGHL 60

Query: 143 DVADFLLKNGANI----ELGASTPLMEAAQEGHLELVRYLLDSGA 183
           ++ + LLKNGA++     +G  TPL  AA  GHLE+   LL  GA
Sbjct: 61  EIVEVLLKNGADVNAVDAIG-FTPLHLAAFIGHLEIAEVLLKHGA 104

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 90.5 bits (226), Expect = 2e-22
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 16/120 (13%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
            L  AA  G              VN   +   +PL LA   GH+++  +L++ GA++  V
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76

Query: 56  NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
           +       +PL LAA  GH+++A +L++ GA++   +  G T    +   G+E++  +L 
Sbjct: 77  D---AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  122 bits (310), Expect = 8e-35
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 4/117 (3%)

Query: 63  ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
           +     A   G +D     + +G ++    + G  PL  AA  G  E++  LL KGA IN
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

Query: 123 AHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVR 176
           A  ++   T L  A   G +     LL  GA+  +      T       +    L++
Sbjct: 68  A-PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  105 bits (264), Expect = 4e-28
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 91  VNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLK 150
           +        M A + G  + V   + KG  +N   E      L  A   G L++ +FLL 
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG-GRKPLHYAADCGQLEILEFLLL 61

Query: 151 NGANIELG---ASTPLMEAAQEGHLELVRYLLDSGA 183
            GA+I        TPL+ A  EGH+  V+ LL  GA
Sbjct: 62  KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 93.2 bits (233), Expect = 1e-23
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 16/118 (13%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           +     A   G              VN   +    PL  AA  G +++   L+ +GA+I 
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMV 111
             +       +PL  A   GHV    LL+ +GA+      +G T       +  + ++
Sbjct: 68  APD---KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  124 bits (314), Expect = 6e-34
 Identities = 40/211 (18%), Positives = 67/211 (31%), Gaps = 45/211 (21%)

Query: 27  ESPLTLAAC---GGHVDLALLLIERGANIEEVNMPTDSF--------ESPLTLAACGGHV 75
           ++ L  A      G     + L++   +        ++          S L +A     +
Sbjct: 44  KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSL 103

Query: 76  DLALLLIERGANIEEVNDE-------------GYTPLMEAAREGHEEMVCVLLQKG---A 119
               LL+E GA++                   G  PL  AA     ++V  LL+     A
Sbjct: 104 QCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA 163

Query: 120 KINA---------H------TEETQETALTLACCGGFLDVADFLLKNGANIELGAS---T 161
            + A         H          + +AL +    G L +   L       E+      T
Sbjct: 164 SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT 223

Query: 162 PLMEAAQEGHLELVRYLLDSGAQEMQTKHID 192
           PL  AA+EG +E+ R++L          H  
Sbjct: 224 PLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  101 bits (253), Expect = 3e-25
 Identities = 33/206 (16%), Positives = 64/206 (31%), Gaps = 53/206 (25%)

Query: 33  AACGGHVDLALLLIERGAN-----IEEVNMPTDSFESPLTLAAC---GGHVDLALLLIER 84
               G  +    L+E          +       + ++ L  A      G     + L++ 
Sbjct: 9   VVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI 68

Query: 85  G-----------ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQ---- 129
                       A   +   +G++ L  A  +   + V +L++ GA ++           
Sbjct: 69  DKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKH 128

Query: 130 --------ETALTLACCGGFLDVADFLLKNG---ANIELGAS------------------ 160
                   E  L+LA C    DV  +LL+N    A++E   S                  
Sbjct: 129 QGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPE 188

Query: 161 -TPLMEAAQEGHLELVRYLLDSGAQE 185
            + L+    +G L++   L  +   E
Sbjct: 189 NSALVIHMYDGLLQMGARLCPTVQLE 214

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 99.9 bits (249), Expect = 1e-24
 Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 16/122 (13%)

Query: 18  HVNMPTDSFESPLTLAACGGHVDLALLLIERG---ANIEE-------------VNMPTDS 61
           H        E PL+LAAC    D+   L+E     A++E              +      
Sbjct: 128 HQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSP 187

Query: 62  FESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI 121
             S L +    G + +   L       E  N +G TPL  AA+EG  E+   +LQ+    
Sbjct: 188 ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247

Query: 122 NA 123
            A
Sbjct: 248 AA 249

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 13/67 (19%)

Query: 3   TDSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERG 49
                S L +    G                +      +PL LAA  G +++   +++R 
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244

Query: 50  ANIEEVN 56
            +    +
Sbjct: 245 FSGAAAH 251

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  123 bits (309), Expect = 1e-33
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 7/160 (4%)

Query: 28  SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
               LA  G   +L   ++   +     +       + L  A   GH ++   L++ G  
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTD---QDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 88  IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF 147
           + + +D G++PL  AA  G +E+V  LL KGA +NA   +   T L  A      ++A  
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVM 124

Query: 148 LLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDSGAQ 184
           LL+ GAN +      +T +  AA +G+L++V  LL   A 
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS 164

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  113 bits (285), Expect = 4e-30
 Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 20/193 (10%)

Query: 8   SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
               LA  G                        + L  A   GH ++   L++ G  + +
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
            +   D+  SPL +AA  G  ++   L+ +GA++  VN  G TPL  AA +   E+  +L
Sbjct: 69  KD---DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGH 171
           L+ GA  +A       TA+  A   G L +   LL   A+  +     +TPL  A  E  
Sbjct: 126 LEGGANPDAKDHY-DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184

Query: 172 LELVRYLLDSGAQ 184
           +E  ++L+  GA 
Sbjct: 185 VEEAKFLVTQGAS 197

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  106 bits (267), Expect = 2e-27
 Identities = 58/193 (30%), Positives = 88/193 (45%), Gaps = 22/193 (11%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
            + L  A   GH             VN   D+  SPL +AA  G  ++   L+ +GA++ 
Sbjct: 41  RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
            VN    +  +PL  AA     ++A++L+E GAN +  +    T +  AA +G+ +MV +
Sbjct: 101 AVN---QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157

Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEG 170
           LL   A  N   +    T L LAC    ++ A FL+  GA+I +      TPL  A   G
Sbjct: 158 LLFYKASTNI-QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--G 214

Query: 171 HLELVRYLLDSGA 183
            L L+   L  G 
Sbjct: 215 GLGLILKRLAEGE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 93.4 bits (232), Expect = 2e-22
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 6/144 (4%)

Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L   G HVN    +  +PL  AA     ++A++L+E GAN +  +       + +  AA 
Sbjct: 92  LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD---HYDATAMHRAAA 148

Query: 72  GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQET 131
            G++ +  +L+   A+    + EG TPL  A  E   E    L+ +GA I    +E ++T
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE-EKT 207

Query: 132 ALTLACCGGFLDVADFLLKNGANI 155
            L +A   G L +    L  G   
Sbjct: 208 PLQVAK--GGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 79.9 bits (197), Expect = 1e-17
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 92  NDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN 151
                     A     +E+   +L   +      ++   TAL  AC  G  ++ +FLL+ 
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQD-SRTALHWACSAGHTEIVEFLLQL 62

Query: 152 GANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQ 184
           G  +        +PL  AA  G  E+V+ LL  GA 
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH 98

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 76.8 bits (189), Expect = 2e-16
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 4   DSFESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFE 63
           +  E  + L   G + +       + +  AA  G++ +  +L+   A+    +       
Sbjct: 117 NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD---TEGN 173

Query: 64  SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
           +PL LA     V+ A  L+ +GA+I   N E  TPL  A   G   ++   L +G + +
Sbjct: 174 TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  111 bits (280), Expect = 1e-30
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 69  AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEET 128
            +   H   +  L+ RG+++     +    L+EAAR G ++ V +L+  GA + A  +  
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 129 QETALTLACCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYL 178
             T L LA   G L+V   LL+ GA++        T    +   G+ +L   L
Sbjct: 58  S-TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  107 bits (269), Expect = 5e-29
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 7/116 (6%)

Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
            +   H   +  L+ RG+++             L  AA  G  D   +L+  GA++   +
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSDL------GKKLLEAARAGQDDEVRILMANGADVAAKD 54

Query: 93  DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
             G TPL  AAR GH E+V +LL+ GA + A  +  + TA  ++   G  D+A+ L
Sbjct: 55  KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK-TAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 81.5 bits (202), Expect = 2e-19
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 29  PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
            L  AA  G  D   +L+  GA++   +    +  +PL LAA  GH+++  LL+E GA++
Sbjct: 27  KLLEAARAGQDDEVRILMANGADVAAKD---KNGSTPLHLAARNGHLEVVKLLLEAGADV 83

Query: 89  EEVNDEGYTPLMEAAREGHEEMVCVL 114
              +  G T    +   G+E++  +L
Sbjct: 84  XAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 63.0 bits (154), Expect = 9e-13
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 136 ACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
                    +  L+  G+++       L+EAA+ G  + VR L+ +GA
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGA 48

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 49.1 bits (118), Expect = 7e-08
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 16/86 (18%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
            L  AA  G              V     +  +PL LAA  GH+++  LL+E GA++   
Sbjct: 27  KLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86

Query: 56  NMPTDSFESPLTLAACGGHVDLALLL 81
           +      ++   ++   G+ DLA +L
Sbjct: 87  D---KFGKTAFDISIDNGNEDLAEIL 109

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  114 bits (286), Expect = 8e-30
 Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 33/174 (18%)

Query: 27  ESPLTLAACGGHVDLALLLIERGANIEE-----------VNMPTDSFESPLTLAACGGHV 75
           ++ L +A    ++ L  LL+E GA+++                    E PL+LAAC   +
Sbjct: 102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161

Query: 76  DLALLLIERG---ANIEEVNDEGYTPLMEAAREGHEE---------MVCVLLQKGAKINA 123
            +   L++     A+I   +  G T L                   M   +L  GAK++ 
Sbjct: 162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP 221

Query: 124 HTEETQE------TALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGH 171
             +  +       T L LA   G + V  ++L+   +           AA   H
Sbjct: 222 TLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP----ECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  102 bits (255), Expect = 2e-25
 Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 48/204 (23%)

Query: 9   PLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL 68
            +  A    +                    +       +R  + E  +   ++ ++ L  
Sbjct: 16  SIFDAVAQSNC-------------QELESLLPFLQRSKKRLTDSEFKD--PETGKTCLLK 60

Query: 69  AAC---GGHVDLALLLIERGANIEEV-----------NDEGYTPLMEAAREGHEEMVCVL 114
           A      G  D   LL++     + +             +G T L  A    +  +V +L
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120

Query: 115 LQKGAKINAHTEETQ-------------ETALTLACCGGFLDVADFLLKNG---ANIELG 158
           ++ GA + A                   E  L+LA C   L +  FLL+N    A+I   
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR 180

Query: 159 AS---TPLMEAAQEGHLELVRYLL 179
            S   T L    +     +     
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKF 204

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 75.2 bits (185), Expect = 9e-16
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 24/123 (19%)

Query: 85  GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQ-------KGAKINAHTEETQETALTLAC 137
            A  +         + +A  + + + +  LL        +         ET +T L  A 
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 138 C---GGFLDVADFLLKNGANIELGA--------------STPLMEAAQEGHLELVRYLLD 180
                G  D    LL      +                  T L  A +  ++ LV  L++
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122

Query: 181 SGA 183
           +GA
Sbjct: 123 NGA 125

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 36/131 (27%)

Query: 7   ESPLTLAACGGH----------------VNMPTDSFESPLTLAACGGHVDLAL------- 43
           E PL+LAAC                   ++       + L          +         
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208

Query: 44  --LLIERGANIEE----VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYT 97
              ++  GA +        +      +PL LAA  G + +   +++R  +          
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPE 261

Query: 98  PLMEAAREGHE 108
               AA   H 
Sbjct: 262 CRHAAAHHHHH 272

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  116 bits (291), Expect = 1e-29
 Identities = 27/154 (17%), Positives = 46/154 (29%), Gaps = 14/154 (9%)

Query: 37  GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY 96
               L     ++G   E +            +  C   +D   LL+     ++ +  E Y
Sbjct: 77  NAKQLWSDAHKKGIKSEVICFV-------AAITGCSSALDTLCLLLTSDEIVKVIQAENY 129

Query: 97  TPLMEAAREGHEEMVCVLLQKGAKINAHTEETQ-ETALTLACCGGFLDVADFLLKNGANI 155
                AA  GH  ++  L +          + +   A  LA   G L V + L +     
Sbjct: 130 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 189

Query: 156 EL------GASTPLMEAAQEGHLELVRYLLDSGA 183
                           A   GH  ++ +LLD   
Sbjct: 190 ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  106 bits (267), Expect = 2e-26
 Identities = 35/196 (17%), Positives = 61/196 (31%), Gaps = 21/196 (10%)

Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L      V +          LAA  GH+ +   L E         +  +++     LAA 
Sbjct: 114 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY-HAFRLAAE 172

Query: 72  GGHVDLALLLIERGANIEE--VNDEGYTPLMEAARE-GHEEMVCVLLQKGAKINAHTEET 128
            GH+ +   L E         +  E Y     AA   GH  ++  LL     +       
Sbjct: 173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY----- 227

Query: 129 QETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELV--------RYLLD 180
              A       G   V  F+ ++   ++         +  +G  +LV         Y+L 
Sbjct: 228 ---AEIHEFEYGEKYVNPFIARHVNRLKEM-HDAFKLSNPDGVFDLVTKSECLQGFYMLR 283

Query: 181 SGAQEMQTKHIDILEF 196
           +  +      +D + F
Sbjct: 284 NLIRRNDEVLLDDIRF 299

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  102 bits (256), Expect = 7e-25
 Identities = 28/222 (12%), Positives = 58/222 (26%), Gaps = 52/222 (23%)

Query: 7   ESPLTLAACGGHVN---------------MPTDSFESPLTLAACGGHVDLALLLIERGAN 51
                LAA  GH++               M          LAA  GH+ +   L E    
Sbjct: 129 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 188

Query: 52  IEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMV 111
                +  +++ +    A   GH ++   L++    +           +     G + + 
Sbjct: 189 EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE-------IHEFEYGEKYVN 241

Query: 112 CVLLQKG------------AKINAHTEETQE-------TALTLACCGGFLDVADFL---- 148
             + +              +  +   +   +         L          + D +    
Sbjct: 242 PFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLL 301

Query: 149 ----LKNGANIELG---ASTPLMEAAQEGHLELVRYLLDSGA 183
               +K  A        A+  L  A + G+      LL   +
Sbjct: 302 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 343

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  101 bits (254), Expect = 1e-24
 Identities = 28/220 (12%), Positives = 58/220 (26%), Gaps = 55/220 (25%)

Query: 9   PLTLAACGGHV----------------NMPTDSFESPLTLAACGGHVDLALLLIERGANI 52
              LAA  GH+                 +  +++ +    A   GH ++   L++    +
Sbjct: 166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 225

Query: 53  EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVND------------------- 93
               +               G   +   +      ++E++D                   
Sbjct: 226 AYAEI----------HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC 275

Query: 94  -EGYTPLMEAAREGHEEMVCVL--------LQKGAKINAHTEETQETALTLACCGGFLDV 144
            +G+  L    R   E ++  +        ++  A             L LA   G    
Sbjct: 276 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT-IPGDANELLRLALRLGNQGA 334

Query: 145 ADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQ 184
              LL   + + L  +         G L+L    L+    
Sbjct: 335 CALLLSIPSVLALTKANNYYINETGGRLDLRAVALEHHHH 374

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 95.0 bits (236), Expect = 4e-22
 Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 14/152 (9%)

Query: 37  GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY 96
            + +   + +    N+E+V          L       +   A  L          ++   
Sbjct: 45  SYKEAIHIFLPGTKNMEQVRQ--------LLCLYYAHYNRNAKQLWSDAHKKGIKSEVIC 96

Query: 97  TPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
                       + +C+LL     +     E    A  LA   G L V + L +      
Sbjct: 97  FVAAITGCSSALDTLCLLLTSDEIVKVIQAE-NYQAFRLAAENGHLHVLNRLCELAPTEI 155

Query: 157 LGA-----STPLMEAAQEGHLELVRYLLDSGA 183
           +             AA+ GHL ++  L +   
Sbjct: 156 MAMIQAENYHAFRLAAENGHLHVLNRLCELAP 187

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 71.1 bits (174), Expect = 6e-14
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 17/120 (14%)

Query: 73  GHVDLALLLIERGANIEEVNDEGYTPLMEAARE-GHEEMVCVLLQKGAKINAHTEETQET 131
            + +   + +    N+E+V       L  A      +++     +KG K         E 
Sbjct: 45  SYKEAIHIFLPGTKNMEQVR--QLLCLYYAHYNRNAKQLWSDAHKKGIKS--------EV 94

Query: 132 ALTLAC---CGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQE 185
              +A    C   LD    LL +   +++  +        AA+ GHL ++  L +    E
Sbjct: 95  ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 154

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 6/75 (8%)

Query: 15  CGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGH 74
                          L LA   G+     LL+   + +           +   +   GG 
Sbjct: 308 ALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK------ANNYYINETGGR 361

Query: 75  VDLALLLIERGANIE 89
           +DL  + +E   +  
Sbjct: 362 LDLRAVALEHHHHHH 376

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  107 bits (271), Expect = 3e-29
 Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 6/102 (5%)

Query: 85  GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDV 144
           G      + +G TPL  AA+ GH E V  LL KGA +NA   +   T L LA   G  ++
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEI 57

Query: 145 ADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
              LL  GA++   +   +TP   A + GH E+V+ L   GA
Sbjct: 58  VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  106 bits (267), Expect = 1e-28
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 29  PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
           PL  AA  GH +    L+ +GA++   +       +PL LAA  GH ++  LL+ +GA++
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNARS---KDGNTPLHLAAKNGHAEIVKLLLAKGADV 68

Query: 89  EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETAL 133
              + +G TP   A + GH E+V +L  KGA +NA +        
Sbjct: 69  NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWG-SSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  105 bits (265), Expect = 2e-28
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 49  GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHE 108
           G      +  T     PL  AA  GH +    L+ +GA++   + +G TPL  AA+ GH 
Sbjct: 1   GHMWGSKDGNT-----PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHA 55

Query: 109 EMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPL 163
           E+V +LL KGA +NA +++   T   LA   G  ++   L   GA++     G+S   
Sbjct: 56  EIVKLLLAKGADVNARSKD-GNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 79.0 bits (196), Expect = 2e-18
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 16/104 (15%)

Query: 9   PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
           PL  AA  GH             VN  +    +PL LAA  GH ++  LL+ +GA++   
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71

Query: 56  NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPL 99
           +       +P  LA   GH ++  LL  +GA++   +       
Sbjct: 72  S---KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  107 bits (269), Expect = 3e-29
 Identities = 47/119 (39%), Positives = 63/119 (52%), Gaps = 31/119 (26%)

Query: 65  PLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
           PL LAA  GH+++  LL+E GA++   +  G TPL  AAR GH E+V +LL+ GA +NA 
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA- 63

Query: 125 TEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
                                D   KNG        TPL  AA+ GHLE+V+ LL++GA
Sbjct: 64  --------------------KD---KNG-------RTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  101 bits (255), Expect = 4e-27
 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 3/91 (3%)

Query: 29  PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
           PL LAA  GH+++  LL+E GA++   +    +  +PL LAA  GH+++  LL+E GA++
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 89  EEVNDEGYTPLMEAAREGHEEMVCVLLQKGA 119
              +  G TPL  AAR GH E+V +LL+ GA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  105 bits (263), Expect = 2e-26
 Identities = 36/211 (17%), Positives = 65/211 (30%), Gaps = 48/211 (22%)

Query: 27  ESPLTLAA---CGGHVDLALLLIERGANIEE----VNMPTDSF----ESPLTLAACGGHV 75
           ++ L  A      G  D   +L++           +N P        ++ L +A      
Sbjct: 47  KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCK 106

Query: 76  DLALLLIERGANIEEVND--------------EGYTPLMEAAREGHEEMVCVLLQKG--- 118
               LL+E+GA++                    G  PL  AA      +V  L + G   
Sbjct: 107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166

Query: 119 AKINAHTEETQETALTLACCGG---------FLDVADFLLKNGANIELGAS--------- 160
           A +    +    T L                   + D LL   A +    +         
Sbjct: 167 ADLRR-QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG 225

Query: 161 -TPLMEAAQEGHLELVRYLLDSGAQEMQTKH 190
            +PLM AA+ G + + ++++     +    H
Sbjct: 226 LSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  102 bits (256), Expect = 1e-25
 Identities = 35/195 (17%), Positives = 61/195 (31%), Gaps = 43/195 (22%)

Query: 33  AACGGHVDLALLLIERGANIEEVNMPTDSF-ESPLTLAA---CGGHVDLALLLIERG--- 85
            +  G   L   L+     + +      S  ++ L  A      G  D   +L++     
Sbjct: 16  GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75

Query: 86  --------ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQ-------- 129
                   +   +V   G T L  A     +  V +L++KGA ++A              
Sbjct: 76  GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGG 135

Query: 130 -----ETALTLACCGGFLDVADFLLKNG---ANIELGAS---TPLMEAAQEGH------- 171
                E  L+LA C     +  +L +NG   A++    S   T L               
Sbjct: 136 YFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTK 195

Query: 172 --LELVRYLLDSGAQ 184
              ++   LL   A+
Sbjct: 196 FVTKMYDLLLIKCAK 210

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 19/111 (17%), Positives = 29/111 (26%), Gaps = 24/111 (21%)

Query: 97  TPLMEAAR----EGHEEMVCVLLQKGAKINAHTEETQ---ETALTLA---CCGGFLDVAD 146
             L +       +G E ++  LL    ++           +T L  A      G  D   
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 147 FLLKNGANIELGAS--------------TPLMEAAQEGHLELVRYLLDSGA 183
            LL                         T L  A +      V  L++ GA
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGA 117

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 91.6 bits (227), Expect = 4e-21
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 28/192 (14%)

Query: 16  GGHVNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGH 74
             ++N+P D    +PL       +++L   L++ G+N    +   +  ES L  A    +
Sbjct: 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD---NMGESCLVKAVKSVN 176

Query: 75  V----DLALLLIERGANIEEVNDEGYTPL------------MEAAREGHEEMVCVLLQKG 118
                    LL      +   +    T L              AA+   + ++  +++K 
Sbjct: 177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 236

Query: 119 AKINAHTEETQETALTLACCGGFLDVA---DFLLKNGANI----ELGASTPLMEAAQEGH 171
            +        +E+            +    D        +      G  T L  AA+ G+
Sbjct: 237 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG-DTCLNIAARLGN 295

Query: 172 LELVRYLLDSGA 183
           + +V  LLD GA
Sbjct: 296 ISIVDALLDYGA 307

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 60.0 bits (145), Expect = 3e-10
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE-VNMPTDSFESPLTLAA 70
           +            + +        G   D  L  ++    I   +N    + ++ L +AA
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 291

Query: 71  CGGHVDLALLLIERGANIEEVNDEGYTPLMEAA 103
             G++ +   L++ GA+    N  G  P+   A
Sbjct: 292 RLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 25/199 (12%), Positives = 50/199 (25%), Gaps = 42/199 (21%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHV----DLALLLIERG 49
            +PL       +                  +  ES L  A    +         LL    
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 191

Query: 50  ANIEEVNMPTDSFESPLTLAACGGHVD------------LALLLIERGANIEEVNDEGYT 97
             +   +       + L        +             L   ++++     +       
Sbjct: 192 PCLILED---SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248

Query: 98  PLMEAA----REGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGA 153
                     ++   E + +       +NA      +T L +A   G + + D LL  GA
Sbjct: 249 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSN-GDTCLNIAARLGNISIVDALLDYGA 307

Query: 154 NIEL----GASTPLMEAAQ 168
           +  +    G   P+   A 
Sbjct: 308 DPFIANKSG-LRPVDFGAG 325

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 69.4 bits (169), Expect = 2e-13
 Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 3/184 (1%)

Query: 8   SPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLT 67
           S  +                     +     +      +  GA++  VN       +PL 
Sbjct: 182 SLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVN-GGQDNATPLI 240

Query: 68  LAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEE 127
            A     +     L++ GAN+ + +  G  PL  A   GH  + C+ L++GA + A  + 
Sbjct: 241 QATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA-RDS 299

Query: 128 TQETALTLACCGGFLDVADFLLKNGANIELGA-STPLMEAAQEGHLELVRYLLDSGAQEM 186
                LT+A      D+   L          A      E   +   +      D   +  
Sbjct: 300 EGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLS 359

Query: 187 QTKH 190
           +  H
Sbjct: 360 RRSH 363

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 67.7 bits (165), Expect = 6e-13
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 7/136 (5%)

Query: 21  MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDS---FESPLTLA---ACGGH 74
                    L  A C   +   L     G +  +     D+    E  L LA   A    
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205

Query: 75  VDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALT 134
           + L   +I+ G +++    +G T L  AA     + + +LL+  A +     E  ETAL 
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT-VNEAGETALD 264

Query: 135 LACCGGFLDVADFLLK 150
           +A      +  + L +
Sbjct: 265 IARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 65.0 bits (158), Expect = 5e-12
 Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 12/123 (9%)

Query: 3   TDSFESPLTLAACGGHVNMP------TDSFESPLTLA---ACGGHVDLALLLIERGANIE 53
                S L   A G     P          E  L LA   A    + L   +I+ G +  
Sbjct: 161 NRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-- 218

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
            ++       + L  AA     D   LL++  A +  VN+ G T L  A ++ H+E   +
Sbjct: 219 -LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEEL 277

Query: 114 LLQ 116
           L Q
Sbjct: 278 LEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 60.8 bits (147), Expect = 1e-10
 Identities = 29/150 (19%), Positives = 46/150 (30%), Gaps = 14/150 (9%)

Query: 57  MPTDSFESPLTLAACGGHVDLALLLIERGANI------EEVNDEGYTPLMEAAREGHE-- 108
                    L  A C   +   L     G +        +        L  A +  ++  
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205

Query: 109 -EMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLM 164
             +V  ++Q G  ++A   +   TAL  A      D    LLK  A +        T L 
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGN-TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 264

Query: 165 EAAQEGHLELVRYLLDSGAQEM-QTKHIDI 193
            A ++ H E    L  + A       H+D 
Sbjct: 265 IARKKHHKECEELLEQAQAGTFAFPLHVDY 294

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 53.5 bits (128), Expect = 3e-08
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           +   GGH++       + L  AA     D   LL++  A +  VN   ++ E+ L +A  
Sbjct: 212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVN---EAGETALDIARK 268

Query: 72  GGHVDLALLLIERGAN 87
             H +   LL +  A 
Sbjct: 269 KHHKECEELLEQAQAG 284

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 66.9 bits (163), Expect = 7e-13
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 23  TDSFESPLTLAACGG---HVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLAL 79
            +  E+ L LA        + +   L++   N   ++  T    + L       + +   
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKGSTALHYCCLTDNAECLK 222

Query: 80  LLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQ 116
           LL+   A+IE  N+ G TPL  A R  HE    +L Q
Sbjct: 223 LLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 66.2 bits (161), Expect = 2e-12
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 59  TDSFESPLTLAACGG---HVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
            +  E+ L LA        + +   L++   N+++   +G T L       + E + +LL
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 116 QKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN 154
           +  A I     E+ ET L +A         + L +  + 
Sbjct: 226 RGKASIEI-ANESGETPLDIAKRLKHEHCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 61.9 bits (150), Expect = 3e-11
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 92  NDEGYTPLMEAAREG---HEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
           ++   T L  A R        +V  L+Q    ++  T +   TAL   C     +    L
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK-GSTALHYCCLTDNAECLKLL 224

Query: 149 LKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEM-QTKHIDI 193
           L+  A+IE+      TPL  A +  H      L  + +       H++ 
Sbjct: 225 LRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEY 273

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 11/94 (11%)

Query: 101 EAAREGHEEMVCVLLQKGAKIN-----AHTEETQETALTLACCGG---FLDVADFLLKNG 152
           EA +      +      G  +      A+  E  ETAL LA        L + DFL++N 
Sbjct: 136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS 195

Query: 153 ANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
            N++       T L       + E ++ LL   A
Sbjct: 196 GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 19/101 (18%)

Query: 3   TDSFESPLTLAAC----------------GGHVNMPTDSFESPLTLAACGGHVDLALLLI 46
            +  E+ L LA                   G+++  T    + L       + +   LL+
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 47  ERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
              A+IE  N   +S E+PL +A    H     LL +  + 
Sbjct: 226 RGKASIEIAN---ESGETPLDIAKRLKHEHCEELLTQALSG 263

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 52.6 bits (126), Expect = 8e-08
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 6/116 (5%)

Query: 22  PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDS---FESPLTLA---ACGGHV 75
                   L  A C   +   L     G +  +     D+    E  L LA   A    +
Sbjct: 128 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL 187

Query: 76  DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQET 131
            L   +I+ G +++    +G T L  AA     + + +LL+  A +    E  +  
Sbjct: 188 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA 243

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	352
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.98
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.82
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	88.62
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	84.21

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=4.8e-38  Score=281.32  Aligned_cols=198  Identities=27%  Similarity=0.273  Sum_probs=172.1

Q ss_pred             CCCCCCccHHHHHHcCCC----------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCCh
Q psy5490           1 MPTDSFESPLTLAACGGH----------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFES   64 (352)
Q Consensus         1 ~~~~~g~t~L~lA~~~~~----------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t   64 (352)
                      ++|.+|+|+||+|+..|+                +|..|..|+||||+|+..|+.+++++|+++|+++   +..+..|+|
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~t   80 (282)
T 1oy3_D            4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV---LVAERGGHT   80 (282)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---SCCCTTSCC
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCC
Confidence            468999999999997664                5667889999999999999999999999999995   667789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-----------------------------------------------CCCcCCCCCh
Q psy5490          65 PLTLAACGGHVDLALLLIERGAN-----------------------------------------------IEEVNDEGYT   97 (352)
Q Consensus        65 ~Lh~A~~~g~~~~v~~Ll~~g~~-----------------------------------------------~~~~d~~G~t   97 (352)
                      |||+|+..|+.+++++|+++|++                                               ++.++..|+|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            99999999999999999998765                                               6778899999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHH
Q psy5490          98 PLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLEL  174 (352)
Q Consensus        98 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~  174 (352)
                      |||+|+..|+.+++++|+++|++++...+..|+||||+|+..|+.+++++|+++|++++.   .|+||||+|+..|+.++
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~  240 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL  240 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHH
Confidence            999999999999999999999999986555699999999999999999999999999865   68999999999999999


Q ss_pred             HHHHHHcCCCccccccccHHHHHHHhh
Q psy5490         175 VRYLLDSGAQEMQTKHIDILEFKKRKQ  201 (352)
Q Consensus       175 v~~Ll~~ga~~~~~~~~~~~~~~~~~~  201 (352)
                      +++|+++|++....+..+.+++.....
T Consensus       241 v~~Ll~~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          241 ARLLRAHGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             HHHHHHTTCCCCCCC------------
T ss_pred             HHHHHHcCCCcCcCCCcccccccccCC
Confidence            999999999999999888888765543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=7.7e-38  Score=276.71  Aligned_cols=197  Identities=32%  Similarity=0.384  Sum_probs=163.6

Q ss_pred             CCCCCCccHHHHHHcCC-------------CCCC--------------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy5490           1 MPTDSFESPLTLAACGG-------------HVNM--------------PTDSFESPLTLAACGGHVDLALLLIERGANIE   53 (352)
Q Consensus         1 ~~~~~g~t~L~lA~~~~-------------~~n~--------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~   53 (352)
                      ++|.+|+|+||+|+..|             +.++              .|..|+||||+|+..|+.+++++|+++|+++ 
T Consensus         5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-   83 (253)
T 1yyh_A            5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-   83 (253)
T ss_dssp             -----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred             CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-
Confidence            46889999999999866             3332              3788999999999999999999999999995 


Q ss_pred             CcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcH
Q psy5490          54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGA-NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETA  132 (352)
Q Consensus        54 ~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~  132 (352)
                        +..+..|+||||+|+..|+.+++++|+++|. +++.++..|+||||+|+..|+.+++++|+++|++++. .+..|.||
T Consensus        84 --~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~t~  160 (253)
T 1yyh_A           84 --NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSA  160 (253)
T ss_dssp             --TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTC-BCTTSCBH
T ss_pred             --CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCC-cCCCCCCH
Confidence              6667899999999999999999999999987 9999999999999999999999999999999999998 47789999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHHhh
Q psy5490         133 LTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQ  201 (352)
Q Consensus       133 L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~  201 (352)
                      ||+|+..|+.+++++|+++|++++.   .|+||||+|+..|+.+++++|+++|++....+..+.++.....+
T Consensus       161 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~  232 (253)
T 1yyh_A          161 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE  232 (253)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHH
Confidence            9999999999999999999999865   68999999999999999999999999999888888777665544

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.3e-36  Score=252.41  Aligned_cols=158  Identities=35%  Similarity=0.506  Sum_probs=143.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCc
Q psy5490          28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGH  107 (352)
Q Consensus        28 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~  107 (352)
                      +.|+.||+.|++++|++||++|+|+   |.+|..|+||||+|+..++.+++++|+++|++++.+|.+|+||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv---n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV---NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCC
Confidence            5799999999999999999999995   6778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490         108 EEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQ  184 (352)
Q Consensus       108 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~  184 (352)
                      .++|++|+++|++++. .+..|+||||+|+..|+.+++++|+++|++++.   .|+|||++|++.|+.+++++|+++||+
T Consensus        83 ~~~v~~Ll~~gadvn~-~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A           83 KEVVKLLISKGADVNA-KDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             HHHHHHHHHCcCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            9999999999999998 477899999999999999999999999999855   789999999999999999999999998


Q ss_pred             ccccc
Q psy5490         185 EMQTK  189 (352)
Q Consensus       185 ~~~~~  189 (352)
                      .....
T Consensus       162 ie~~~  166 (169)
T 4gpm_A          162 LEHHH  166 (169)
T ss_dssp             -----
T ss_pred             cCCCC
Confidence            76543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.1e-36  Score=264.61  Aligned_cols=198  Identities=25%  Similarity=0.317  Sum_probs=178.4

Q ss_pred             CCCCCccHHHHHHcCCC-----------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCCh
Q psy5490           2 PTDSFESPLTLAACGGH-----------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFES   64 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~-----------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t   64 (352)
                      +|.+|+|+||+||..|+                 +|..|..|+||||+|+..|+.+++++|+++|+++   +..+..|+|
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t   81 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP---MALDRHGQT   81 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc---cccCCCCCC
Confidence            58999999999997664                 5666889999999999999999999999999995   556789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcC
Q psy5490          65 PLTLAACGGHVDLALLLIERGA----NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGG  140 (352)
Q Consensus        65 ~Lh~A~~~g~~~~v~~Ll~~g~----~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  140 (352)
                      |||+|+..|+.+++++|++++.    +++..|..|+||||+|+..|+.+++++|+++|++++......|.||||+|+..|
T Consensus        82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~  161 (241)
T 1k1a_A           82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN  161 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence            9999999999999999999987    889999999999999999999999999999999999865478999999999999


Q ss_pred             CHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHHhhH
Q psy5490         141 FLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQE  202 (352)
Q Consensus       141 ~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~  202 (352)
                      +.+++++|+++|++++.   .|+||||+|+..|+.+++++|+++|++....+..+.++.......
T Consensus       162 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  226 (241)
T 1k1a_A          162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR  226 (241)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhc
Confidence            99999999999999865   689999999999999999999999999988887776665554443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.3e-36  Score=260.67  Aligned_cols=197  Identities=26%  Similarity=0.366  Sum_probs=179.6

Q ss_pred             CCCCCCccHHHHHHcCCCC--------------CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHH
Q psy5490           1 MPTDSFESPLTLAACGGHV--------------NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPL   66 (352)
Q Consensus         1 ~~~~~g~t~L~lA~~~~~~--------------n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~L   66 (352)
                      |.+..+.++||.|+..|++              +..|..|+||||+|+..|+.+++++|+++|+++   +..+..|+|||
T Consensus         1 me~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L   77 (231)
T 3aji_A            1 MEGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV---NDKDDAGWSPL   77 (231)
T ss_dssp             --CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTSCCHH
T ss_pred             CCCccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC---CCcCCCCCCHH
Confidence            4567789999999988764              345889999999999999999999999999984   66778999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHH
Q psy5490          67 TLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVAD  146 (352)
Q Consensus        67 h~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~  146 (352)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.++++
T Consensus        78 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~  156 (231)
T 3aji_A           78 HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYDATAMHRAAAKGNLKMVH  156 (231)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998 5777999999999999999999


Q ss_pred             HHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHHhh
Q psy5490         147 FLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQ  201 (352)
Q Consensus       147 ~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~  201 (352)
                      +|+++|++++.   .|+||||+|+..|+.+++++|+++|++....+..+.++.....+
T Consensus       157 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  214 (231)
T 3aji_A          157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKG  214 (231)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCH
T ss_pred             HHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence            99999999865   68899999999999999999999999999888888777666543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=9.6e-36  Score=260.04  Aligned_cols=197  Identities=26%  Similarity=0.384  Sum_probs=181.0

Q ss_pred             CCCCCCccHHHHHHcCC-------------CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHH
Q psy5490           1 MPTDSFESPLTLAACGG-------------HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLT   67 (352)
Q Consensus         1 ~~~~~g~t~L~lA~~~~-------------~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh   67 (352)
                      ++|.+|+|+||+|+..|             +++..+..|.||||+|+..|+.+++++|+++|+++   +..+..|.||||
T Consensus         6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~   82 (237)
T 3b7b_A            6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV---DPKDAEGSTCLH   82 (237)
T ss_dssp             CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC---CCCCTTSCCHHH
T ss_pred             cccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC---CCCCCCCCcHHH
Confidence            46889999999999654             56677899999999999999999999999999985   566789999999


Q ss_pred             HHHHcCCHHHHHHHHHcC-CCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHH
Q psy5490          68 LAACGGHVDLALLLIERG-ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVAD  146 (352)
Q Consensus        68 ~A~~~g~~~~v~~Ll~~g-~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~  146 (352)
                      +|+..|+.+++++|+++| .+++..+..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.++++
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~  161 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI-RDNEENICLHWAAFSGCVDIAE  161 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHCCHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-cCCCCCCHHHHHHHCCCHHHHH
Confidence            999999999999999998 89999999999999999999999999999999999998 5778999999999999999999


Q ss_pred             HHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHHhh
Q psy5490         147 FLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQ  201 (352)
Q Consensus       147 ~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~  201 (352)
                      +|+++|++++.   .|.||||+|+..|+.+++++|+++|++....+..+.+++.....
T Consensus       162 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  219 (237)
T 3b7b_A          162 ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL  219 (237)
T ss_dssp             HHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCT
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            99999999865   68999999999999999999999999999888888777765543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.5e-36  Score=262.08  Aligned_cols=195  Identities=20%  Similarity=0.249  Sum_probs=174.6

Q ss_pred             CccHHHHHHcCCCCC--------------CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHH
Q psy5490           6 FESPLTLAACGGHVN--------------MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC   71 (352)
Q Consensus         6 g~t~L~lA~~~~~~n--------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~   71 (352)
                      |+|+||+|+..|+++              ..|..|+||||+|+..|+.+++++|+++|++++.....+..|+||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            789999999887743              358899999999999999999999999996654433477899999999999


Q ss_pred             cCCHHHHHHHHHcC--CCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHH
Q psy5490          72 GGHVDLALLLIERG--ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLL  149 (352)
Q Consensus        72 ~g~~~~v~~Ll~~g--~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  149 (352)
                      .|+.+++++|+++|  ++++..+..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999998  89999999999999999999999999999999999998 4778999999999999999999999


Q ss_pred             HcC-CCCCC---CCCCHHHHHHHcCCHHHHHHHH-HcCCCccccccccHHHHHHHhh
Q psy5490         150 KNG-ANIEL---GASTPLMEAAQEGHLELVRYLL-DSGAQEMQTKHIDILEFKKRKQ  201 (352)
Q Consensus       150 ~~g-~~~~~---~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~~~~~~~~~~~  201 (352)
                      ++| ++++.   .|+||||+|+..|+.+++++|+ ++|++....+..+.++.....+
T Consensus       161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred             hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence            999 87654   7899999999999999999999 9999999888777666554433

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.2e-36  Score=265.93  Aligned_cols=182  Identities=24%  Similarity=0.232  Sum_probs=164.3

Q ss_pred             CCCCCccHHHHHHcCCCC-----------------CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCCh
Q psy5490           2 PTDSFESPLTLAACGGHV-----------------NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFES   64 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~~-----------------n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t   64 (352)
                      +|.+|+|+||+|+..|+.                 |..|..|+||||+|+..|+.+++++|+++|+++   +..+..|+|
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t   80 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP---ELRDFRGNT   80 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS---CCCCTTCCC
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCC
Confidence            588999999999977654                 455778999999999999999999999999995   667789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHH
Q psy5490          65 PLTLAACGGHVDLALLLIERGAN------IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACC  138 (352)
Q Consensus        65 ~Lh~A~~~g~~~~v~~Ll~~g~~------~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~  138 (352)
                      |||+|+..|+.+++++|+++|.+      ++..+..|+||||+|+..|+.+++++|+++|++++......|.||||+|+.
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Confidence            99999999999999999999876      567788999999999999999999999999999998544489999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q psy5490         139 GGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEM  186 (352)
Q Consensus       139 ~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  186 (352)
                      .|+.+++++|+++|++++.   .|+|||++|+..|+.+++++|+++|++..
T Consensus       161 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             TTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             cCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            9999999999999999865   68999999999999999999999999754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=266.84  Aligned_cols=193  Identities=32%  Similarity=0.409  Sum_probs=175.2

Q ss_pred             CCCCCccHHHHHHcCCC-------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           2 PTDSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~-------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      +|.+|+|+||+|+..|+             +|..|.+|+||||+|+..|+.+++++|+++|+++   +..+..|+||||+
T Consensus        55 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~t~L~~  131 (285)
T 3d9h_A           55 DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV---NGVTADWHTPLFN  131 (285)
T ss_dssp             SSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS---SCCCTTCCCHHHH
T ss_pred             CCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC---CCCCCCCCCHHHH
Confidence            47889999999997654             5666899999999999999999999999999994   6677999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHH
Q psy5490          69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL  148 (352)
Q Consensus        69 A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  148 (352)
                      |+..|+.++|++|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|
T Consensus       132 A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~v~~L  209 (285)
T 3d9h_A          132 ACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDH-KISHLGTPLYLACENQQRACVKKL  209 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTC-CBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHH
Confidence            999999999999999999998644 599999999999999999999999999998 577899999999999999999999


Q ss_pred             HHcCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHH
Q psy5490         149 LKNGANIEL--GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKR  199 (352)
Q Consensus       149 l~~g~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~  199 (352)
                      +++|++++.  .|+||||+|+..|+.+++++|+++|++....+..+.+++...
T Consensus       210 l~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  262 (285)
T 3d9h_A          210 LESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV  262 (285)
T ss_dssp             HHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGS
T ss_pred             HHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHh
Confidence            999998865  688999999999999999999999999988887776665544

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=5e-35  Score=253.13  Aligned_cols=182  Identities=26%  Similarity=0.256  Sum_probs=155.1

Q ss_pred             CCCCCccHHHHHHcCC-------------CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           2 PTDSFESPLTLAACGG-------------HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~-------------~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      .|.+|+|+||+|+..|             +++..|..|+||||+|+..|+.+++++|++++...  ++..+..|+||||+
T Consensus        21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~   98 (223)
T 2f8y_A           21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD--LDARMHDGTTPLIL   98 (223)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSC--TTCCCTTCCCHHHH
T ss_pred             cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCcHHHH
Confidence            3678899999998644             45666888899999999999999999999887721  45667888999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHH
Q psy5490          69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL  148 (352)
Q Consensus        69 A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  148 (352)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|
T Consensus        99 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~L  177 (223)
T 2f8y_A           99 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-QNNREETPLFLAAREGSYETAKVL  177 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCcCHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999998898999999999999999999999999999887 467788999999999999999999


Q ss_pred             HHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q psy5490         149 LKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEM  186 (352)
Q Consensus       149 l~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  186 (352)
                      +++|++++.   .|.|||++|++.++.+++++|+++|+...
T Consensus       178 l~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          178 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             HHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            999988754   67899999999999999999999888644

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=4.1e-36  Score=268.43  Aligned_cols=185  Identities=23%  Similarity=0.234  Sum_probs=162.7

Q ss_pred             CCCCCccHHHHHHcCCCCCCC---------------------CCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCC---
Q psy5490           2 PTDSFESPLTLAACGGHVNMP---------------------TDSFESPLTLAACG---GHVDLALLLIERGANIEE---   54 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~~n~~---------------------d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~---   54 (352)
                      .|.+|+|+||.|+..|+++++                     |..|+||||+|+..   |+.+++++|+++|+++..   
T Consensus         9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~   88 (273)
T 2pnn_A            9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ   88 (273)
T ss_dssp             --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred             CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence            478999999999999987743                     56899999999987   999999999999876432   


Q ss_pred             -cC----CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCC--------------CCChHHHHHHHcCcHHHHHHHH
Q psy5490          55 -VN----MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVND--------------EGYTPLMEAAREGHEEMVCVLL  115 (352)
Q Consensus        55 -~n----~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~--------------~G~t~L~~A~~~g~~~~v~~Ll  115 (352)
                       ++    ..|..|+||||+|+..|+.++|++|+++|++++.++.              .|+||||+|+..|+.+++++|+
T Consensus        89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  168 (273)
T 2pnn_A           89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL  168 (273)
T ss_dssp             HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHH
T ss_pred             HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence             12    2567899999999999999999999999999999987              7999999999999999999999


Q ss_pred             h---cCCCcccccccccCcHHHHHHHcCC---------HHHHHHHHHcCCCC----------CCCCCCHHHHHHHcCCHH
Q psy5490         116 Q---KGAKINAHTEETQETALTLACCGGF---------LDVADFLLKNGANI----------ELGASTPLMEAAQEGHLE  173 (352)
Q Consensus       116 ~---~g~~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~----------~~~g~t~L~~A~~~~~~~  173 (352)
                      +   +|++++. .+..|+||||+|+..|+         .+++++|+++|+++          |..|+||||+|+..|+.+
T Consensus       169 ~~~~~gad~~~-~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~  247 (273)
T 2pnn_A          169 QNSWQPADISA-RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG  247 (273)
T ss_dssp             HCSSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             hcccCCCCcee-eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHH
Confidence            9   9999998 57789999999999998         89999999999876          447899999999999999


Q ss_pred             HHHHHHHcCC-Cccc
Q psy5490         174 LVRYLLDSGA-QEMQ  187 (352)
Q Consensus       174 ~v~~Ll~~ga-~~~~  187 (352)
                      +|++|+++|+ ++..
T Consensus       248 iv~~Ll~~ga~dp~~  262 (273)
T 2pnn_A          248 VLAYILQREIHEPEC  262 (273)
T ss_dssp             HHHHHHHHHTC----
T ss_pred             HHHHHHHCCCCCchh
Confidence            9999999999 4443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=9.2e-35  Score=256.93  Aligned_cols=177  Identities=27%  Similarity=0.268  Sum_probs=163.5

Q ss_pred             CCCCCccHHHHHHcC-------------CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCCChHHH
Q psy5490           2 PTDSFESPLTLAACG-------------GHVNMPTDSFESPLTLAACGGHVDLALLLIERGA-NIEEVNMPTDSFESPLT   67 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~-------------~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~n~~~~~g~t~Lh   67 (352)
                      .|..|+|+||+|+..             .+++..|..|+||||+|+..|+.+++++|+++|. +   ++..+..|+||||
T Consensus        53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~g~t~L~  129 (253)
T 1yyh_A           53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD---LDARMHDGTTPLI  129 (253)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC---TTCCCTTCCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---ccccCCCCCcHHH
Confidence            478899999999964             4567779999999999999999999999999987 5   4667789999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHH
Q psy5490          68 LAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF  147 (352)
Q Consensus        68 ~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~  147 (352)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++
T Consensus       130 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpL~~A~~~~~~~~v~~  208 (253)
T 1yyh_A          130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-QNNREETPLFLAAREGSYETAKV  208 (253)
T ss_dssp             HHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998 47789999999999999999999


Q ss_pred             HHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcC
Q psy5490         148 LLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSG  182 (352)
Q Consensus       148 Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g  182 (352)
                      |+++|++++.   .|+|||++|++.|+.+|+++|.+..
T Consensus       209 Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          209 LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             HHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            9999999865   6899999999999999999998653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.6e-35  Score=253.72  Aligned_cols=179  Identities=30%  Similarity=0.353  Sum_probs=167.1

Q ss_pred             CCCCCccHHHHHHcC-------------CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           2 PTDSFESPLTLAACG-------------GHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~-------------~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      +|..|+|+||+|+..             .+++..|..|+||||+|+..|+.+++++|+++|+++   +..+..|+||||+
T Consensus        36 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~  112 (231)
T 3aji_A           36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV---NAVNQNGCTPLHY  112 (231)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC---CCCCCCCCCHHHH
Confidence            578999999999964             456777899999999999999999999999999995   5667899999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHH
Q psy5490          69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL  148 (352)
Q Consensus        69 A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  148 (352)
                      |+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|
T Consensus       113 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~L  191 (231)
T 3aji_A          113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI-QDTEGNTPLHLACDEERVEEAKFL  191 (231)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc-cCCCCCCHHHHHHHCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998 477899999999999999999999


Q ss_pred             HHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490         149 LKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQ  184 (352)
Q Consensus       149 l~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~  184 (352)
                      +++|++++.   .|.|||++|+..++.+++++|+++|++
T Consensus       192 l~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          192 VTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             HHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            999999865   689999999999999999999998875

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.7e-34  Score=264.66  Aligned_cols=197  Identities=28%  Similarity=0.312  Sum_probs=174.7

Q ss_pred             CCCCCccHHHHHHcCC-------------CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           2 PTDSFESPLTLAACGG-------------HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~-------------~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      +|..|+|+||+|+..|             ++|..|..|+||||+|+..|+.+++++|+++|+++   +..+..|+||||+
T Consensus        54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~---~~~~~~g~t~L~~  130 (351)
T 3utm_A           54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV---NAMDLWQFTPLHE  130 (351)
T ss_dssp             SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC---CCCCCCCCCHHHH
Confidence            4778999999999654             56777899999999999999999999999999985   5667889999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCcC------------------------------------------------------CC
Q psy5490          69 AACGGHVDLALLLIERGANIEEVN------------------------------------------------------DE   94 (352)
Q Consensus        69 A~~~g~~~~v~~Ll~~g~~~~~~d------------------------------------------------------~~   94 (352)
                      |+..|+.+++++|+++|++++..+                                                      ..
T Consensus       131 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  210 (351)
T 3utm_A          131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS  210 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTT
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCC
Confidence            999999999999999999887654                                                      45


Q ss_pred             CChHHHHHHHc---CcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHH
Q psy5490          95 GYTPLMEAARE---GHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQ  168 (352)
Q Consensus        95 G~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~  168 (352)
                      |.||||+|+..   +..+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++.   .|+||||+|+.
T Consensus       211 ~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~  289 (351)
T 3utm_A          211 HETALHCAVASLHPKRKQVAELLLRKGANVNE-KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL  289 (351)
T ss_dssp             CCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHHhCccHHHHHHHHHHcCCCcCC-cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            67899999988   668999999999999998 477899999999999999999999999999865   68999999999


Q ss_pred             cCCHHHHHHHHHcCCCccccccccHHHHHHHhhH
Q psy5490         169 EGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQE  202 (352)
Q Consensus       169 ~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~  202 (352)
                      .|+.++|++|+++|++....+..+.++.....+.
T Consensus       290 ~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~~~  323 (351)
T 3utm_A          290 AGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEA  323 (351)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSCHH
T ss_pred             cCcHHHHHHHHHcCCCCCCcCCCCCChhhhhhHH
Confidence            9999999999999999999888888777665443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.3e-34  Score=244.93  Aligned_cols=176  Identities=26%  Similarity=0.349  Sum_probs=161.5

Q ss_pred             CCCCccHHHHHHcCC--------------CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           3 TDSFESPLTLAACGG--------------HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         3 ~~~g~t~L~lA~~~~--------------~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      +..+.|+||.|+..|              ++|..|.+|+||||+|+..|+.+++++|+++|+++   +..+..|+||||+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~   78 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI---NLQNSISDSPYLY   78 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHH
Confidence            457899999999644              56777999999999999999999999999999995   5667899999999


Q ss_pred             HHHcCCHHHHHHHH-HcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcC-CCcccccccccCcHHHHHHHcCC-----
Q psy5490          69 AACGGHVDLALLLI-ERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKG-AKINAHTEETQETALTLACCGGF-----  141 (352)
Q Consensus        69 A~~~g~~~~v~~Ll-~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~g~-----  141 (352)
                      |+..|+.+++++|+ ..+.+++..|..|.||||+|+..|+.+++++|+++| ++++. .+..|.||||+|+..++     
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~~~~~~~~  157 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF-QNDFGYTALIEAVGLREGNQLY  157 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTC-CCTTSCCHHHHHHHSSCCSHHH
T ss_pred             HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC-CCCCCCCHHHHHHHhccchhhH
Confidence            99999999999999 567799999999999999999999999999999999 89988 57789999999999998     


Q ss_pred             HHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcC
Q psy5490         142 LDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSG  182 (352)
Q Consensus       142 ~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g  182 (352)
                      .+++++|+++|++++.   .|+||||+|+..|+.+++++|+++|
T Consensus       158 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            9999999999999865   6889999999999999999999887

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.2e-36  Score=267.53  Aligned_cols=195  Identities=29%  Similarity=0.359  Sum_probs=153.8

Q ss_pred             CCCCccHHHHHHcCCCCCC---------------------CCCCCChHHHHHHHcCCH-HHHHHHHHcCCCCCCcCCCCC
Q psy5490           3 TDSFESPLTLAACGGHVNM---------------------PTDSFESPLTLAACGGHV-DLALLLIERGANIEEVNMPTD   60 (352)
Q Consensus         3 ~~~g~t~L~lA~~~~~~n~---------------------~d~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~n~~~~   60 (352)
                      |..+.++|+.||..|++++                     .+..|.|||++|+..++. .++++|++.|+++   |..|.
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv---n~~d~   84 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV---NVTSQ   84 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT---TCCCT
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC---CCcCC
Confidence            5667899999999888543                     356788999999998776 4889999999995   66779


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcC
Q psy5490          61 SFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGG  140 (352)
Q Consensus        61 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  140 (352)
                      +|+||||+|+..|+.++|++|+++|++++.++..|.||||+|+..++.+++++|++.|++++. .+..|+||||+|+..|
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~-~d~~g~TpL~~A~~~g  163 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK-KDLSGNTPLIYACSGG  163 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999999999999999999998 4778999999999999


Q ss_pred             CHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHHhh
Q psy5490         141 FLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQ  201 (352)
Q Consensus       141 ~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~  201 (352)
                      +.+++++|+++|+++|.   .|+||||+|+..|+.++|++|+++|++.+..+..+.+++....+
T Consensus       164 ~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          164 HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             CGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCT
T ss_pred             CHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHh
Confidence            99999999999999865   68999999999999999999999999999888887777655543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-34  Score=270.78  Aligned_cols=195  Identities=26%  Similarity=0.327  Sum_probs=175.5

Q ss_pred             CCCccHHHHHHcCCCC---------------------CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCC
Q psy5490           4 DSFESPLTLAACGGHV---------------------NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSF   62 (352)
Q Consensus         4 ~~g~t~L~lA~~~~~~---------------------n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g   62 (352)
                      ..|+|+||+|+..|+.                     |..|..|+||||+|+..|+.++|++|+++|+++   +..+..|
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~---~~~~~~g  199 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP---TIYNKSE  199 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTC
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC---cccCCCC
Confidence            6899999999976654                     566889999999999999999999999999995   5667899


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCChHHHHHHHcC---cHHHHHHHHhcCCCcccc-------ccccc
Q psy5490          63 ESPLTLAACGGHVDLALLLIERG---ANIEEVNDEGYTPLMEAAREG---HEEMVCVLLQKGAKINAH-------TEETQ  129 (352)
Q Consensus        63 ~t~Lh~A~~~g~~~~v~~Ll~~g---~~~~~~d~~G~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~-------~~~~g  129 (352)
                      +||||+|+..|+.++|++|++++   ++++..|..|+||||+|+..+   +.+++++|+++|++++..       .+..|
T Consensus       200 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g  279 (373)
T 2fo1_E          200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  279 (373)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccC
Confidence            99999999999999999999988   899999999999999999998   899999999999999862       34578


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcC-CCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHHhh
Q psy5490         130 ETALTLACCGGFLDVADFLLKNG-ANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQ  201 (352)
Q Consensus       130 ~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~  201 (352)
                      .||||+|+..|+.+++++|++++ ++++.   .|+||||+|+..|+.++|++|+++|++.+..+..+.+++.....
T Consensus       280 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~  355 (373)
T 2fo1_E          280 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQA  355 (373)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHH
T ss_pred             CCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHH
Confidence            99999999999999999999876 88755   68999999999999999999999999999888777766655443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=265.14  Aligned_cols=180  Identities=33%  Similarity=0.426  Sum_probs=147.2

Q ss_pred             CCCCccHHHHHHc--------------CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           3 TDSFESPLTLAAC--------------GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         3 ~~~g~t~L~lA~~--------------~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      |..|.|+|+.|+.              |.++|..|.+|+||||+|+..|+.++|++|++.|+++   +..+..|.||||+
T Consensus        49 ~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~---~~~~~~g~t~l~~  125 (269)
T 4b93_B           49 DPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA---GARNADQAVPLHL  125 (269)
T ss_dssp             --------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT---TCCCTTCCCHHHH
T ss_pred             CccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc---CccCCCCCCcccc
Confidence            5568889998873              5678888999999999999999999999999999995   5667899999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHH
Q psy5490          69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL  148 (352)
Q Consensus        69 A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  148 (352)
                      |+..++.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++. .+..|.||||+|+..|+.++|++|
T Consensus       126 a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~-~~~~g~t~Lh~A~~~g~~~~v~~L  204 (269)
T 4b93_B          126 ACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA-SNNKGNTALHEAVIEKHVFVVELL  204 (269)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             ccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCc-cccCCCcHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998 577899999999999999999999


Q ss_pred             HHcCCCCCC---CCCCHHHHHHHcCC-HHHHHHHHHcCCCcc
Q psy5490         149 LKNGANIEL---GASTPLMEAAQEGH-LELVRYLLDSGAQEM  186 (352)
Q Consensus       149 l~~g~~~~~---~g~t~L~~A~~~~~-~~~v~~Ll~~ga~~~  186 (352)
                      +++|++++.   .|+||||+|+++++ .+++++|...++...
T Consensus       205 l~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~  246 (269)
T 4b93_B          205 LLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD  246 (269)
T ss_dssp             HHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence            999999865   78999999998886 466666666665443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.5e-35  Score=266.89  Aligned_cols=184  Identities=15%  Similarity=0.113  Sum_probs=162.4

Q ss_pred             CCCCCccHHHHHHcCCCCCCC-----------CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHH
Q psy5490           2 PTDSFESPLTLAACGGHVNMP-----------TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA   70 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~~n~~-----------d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~   70 (352)
                      +|.+|+|+||+|+..|+++++           ..+|+||||+|+..|+.+++++|+++|+++   +..+..|+||||+|+
T Consensus        27 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~d~~g~t~L~~A~  103 (285)
T 3kea_A           27 ADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDD---SQFDDKGNTALYYAV  103 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCT---TCCCTTSCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCcHHHHHH
Confidence            588999999999987764332           235899999999999999999999999995   566789999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCC-ChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHH
Q psy5490          71 CGGHVDLALLLIERGANIEEVNDEG-YTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLL  149 (352)
Q Consensus        71 ~~g~~~~v~~Ll~~g~~~~~~d~~G-~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  149 (352)
                      ..|+.++|++|+++|++++.++..| .||||+|+..|+.+++++|+++|++...  ...|.||||+|+..|+.+++++|+
T Consensus       104 ~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll  181 (285)
T 3kea_A          104 DSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLL  181 (285)
T ss_dssp             HTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHHHHHHH
Confidence            9999999999999999999999999 7999999999999999999999988743  236889999999999999999999


Q ss_pred             HcCCCCCC---CCCCH-HHHHHHcCCHHHHHHHHHcCCCcccccc
Q psy5490         150 KNGANIEL---GASTP-LMEAAQEGHLELVRYLLDSGAQEMQTKH  190 (352)
Q Consensus       150 ~~g~~~~~---~g~t~-L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  190 (352)
                      ++|++++.   .|+|| ||+|+..|+.+++++|+++|++.+..+.
T Consensus       182 ~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~  226 (285)
T 3kea_A          182 DYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL  226 (285)
T ss_dssp             HHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG
T ss_pred             HcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh
Confidence            99988765   57787 9999999999999999999999887654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=3.7e-35  Score=259.68  Aligned_cols=180  Identities=24%  Similarity=0.205  Sum_probs=161.7

Q ss_pred             CCccHHHHHHcCCCC-----------------CC----CCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCcC----
Q psy5490           5 SFESPLTLAACGGHV-----------------NM----PTDSFESPLTLAACG---GHVDLALLLIERGANIEEVN----   56 (352)
Q Consensus         5 ~g~t~L~lA~~~~~~-----------------n~----~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~n----   56 (352)
                      +|+|+||.|+..|++                 |.    .|..|+||||+|+..   |+.+++++|+++|++++...    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            589999999976665                 33    577899999999999   99999999999998865322    


Q ss_pred             ----CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-------------CChHHHHHHHcCcHHHHHHHHh---
Q psy5490          57 ----MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDE-------------GYTPLMEAAREGHEEMVCVLLQ---  116 (352)
Q Consensus        57 ----~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~-------------G~t~L~~A~~~g~~~~v~~Ll~---  116 (352)
                          ..|..|+||||+|+..|+.++|++|+++|++++.++..             |+||||+|+..|+.+++++|++   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                24467999999999999999999999999999999886             9999999999999999999999   


Q ss_pred             cCCCcccccccccCcHHHHHHH--cCCHH-------HHHHHHHcCCCC-------CC---CCCCHHHHHHHcCCHHHHHH
Q psy5490         117 KGAKINAHTEETQETALTLACC--GGFLD-------VADFLLKNGANI-------EL---GASTPLMEAAQEGHLELVRY  177 (352)
Q Consensus       117 ~g~~~~~~~~~~g~t~L~~A~~--~g~~~-------~v~~Ll~~g~~~-------~~---~g~t~L~~A~~~~~~~~v~~  177 (352)
                      +|++++. .+..|+||||+|+.  .++.+       ++++|+++|+++       +.   .|+||||+|+..|+.+++++
T Consensus       161 ~ga~~n~-~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~  239 (256)
T 2etb_A          161 QPASLEA-TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRH  239 (256)
T ss_dssp             CCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cCCCcCc-cCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHH
Confidence            9999998 57789999999999  88888       999999999887       43   78999999999999999999


Q ss_pred             HHHcCCCc
Q psy5490         178 LLDSGAQE  185 (352)
Q Consensus       178 Ll~~ga~~  185 (352)
                      |+++|++.
T Consensus       240 Ll~~g~~~  247 (256)
T 2etb_A          240 ILQREFSG  247 (256)
T ss_dssp             HHHHHHHH
T ss_pred             HHhCCCCC
Confidence            99988643

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.6e-34  Score=257.02  Aligned_cols=181  Identities=23%  Similarity=0.228  Sum_probs=166.6

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChH
Q psy5490          19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTP   98 (352)
Q Consensus        19 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~   98 (352)
                      ++..|.+|+||||+|+..|+.++|++|+++|++.+.++.++..|+||||+|+..|+.++|++|+++|++++.+|..|+||
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            46789999999999999999999999999999877678889999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCC-----------------------------------------------cccccccccCc
Q psy5490          99 LMEAAREGHEEMVCVLLQKGAK-----------------------------------------------INAHTEETQET  131 (352)
Q Consensus        99 L~~A~~~g~~~~v~~Ll~~g~~-----------------------------------------------~~~~~~~~g~t  131 (352)
                      ||+|+..|+.+++++|+++|++                                               ++. .+..|.|
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~t  160 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA-ENYDGHT  160 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTC-CCTTSCC
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCC-cCCCCcC
Confidence            9999999999999999998866                                               444 3567999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHHh
Q psy5490         132 ALTLACCGGFLDVADFLLKNGANIEL----GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRK  200 (352)
Q Consensus       132 ~L~~A~~~g~~~~v~~Ll~~g~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  200 (352)
                      |||+|+..|+.+++++|+++|++++.    .|+||||+|+..|+.++|++|+++|++.+..+..+.++.....
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~  233 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSAL  233 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHH
Confidence            99999999999999999999999865    3889999999999999999999999999998888777766554

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.3e-34  Score=257.25  Aligned_cols=189  Identities=29%  Similarity=0.334  Sum_probs=155.5

Q ss_pred             CCCccHHHHHHcCCCCC------------------------CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Q psy5490           4 DSFESPLTLAACGGHVN------------------------MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPT   59 (352)
Q Consensus         4 ~~g~t~L~lA~~~~~~n------------------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~   59 (352)
                      ..|.|+||+|+..|+..                        ..|..|+||||+|+..|+.+++++|++.|+++   +..+
T Consensus        13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~~   89 (285)
T 3d9h_A           13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV---NIIT   89 (285)
T ss_dssp             -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS---CEEC
T ss_pred             hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcC
Confidence            46899999999888742                        23678999999999999999999999999985   5667


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHc
Q psy5490          60 DSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCG  139 (352)
Q Consensus        60 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  139 (352)
                      ..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.  +..|.||||+|+..
T Consensus        90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~  167 (285)
T 3d9h_A           90 ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARR  167 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHc
Confidence            8999999999999999999999999999999999999999999999999999999999999986  33489999999999


Q ss_pred             CCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHH
Q psy5490         140 GFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKK  198 (352)
Q Consensus       140 g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~  198 (352)
                      |+.+++++|+++|++++.   .|+||||+|+..|+.+++++|+++|++.+. +..+.++...
T Consensus       168 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~  228 (285)
T 3d9h_A          168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHA  228 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHH
Confidence            999999999999999865   688999999999999999999999999874 4444444433

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.9e-33  Score=250.06  Aligned_cols=193  Identities=30%  Similarity=0.367  Sum_probs=150.0

Q ss_pred             CCCCccHHHHHH-------------cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHH
Q psy5490           3 TDSFESPLTLAA-------------CGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLA   69 (352)
Q Consensus         3 ~~~g~t~L~lA~-------------~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A   69 (352)
                      +..|+|+||+|+             .|.+++..|..|.||||+|+..|+.+++++|+++|+++   +..+..|+||||+|
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A  112 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV---NECDFYGFTAFMEA  112 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCBCTTCCBHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCcccCCHHHHH
Confidence            566788888887             67778888888888888888888888888888888874   45567788888888


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCc----------CCCCChHHHHHHHcCcHHHHHHHHhc-CCCcccccccccCcHHHHHHH
Q psy5490          70 ACGGHVDLALLLIERGANIEEV----------NDEGYTPLMEAAREGHEEMVCVLLQK-GAKINAHTEETQETALTLACC  138 (352)
Q Consensus        70 ~~~g~~~~v~~Ll~~g~~~~~~----------d~~G~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~  138 (352)
                      +..|+.+++++|+++|++++..          +..|.||||+|+..|+.+++++|+++ |++++. .+..|.||||+|+.
T Consensus       113 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~l~~a~~  191 (285)
T 1wdy_A          113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA-CDNMGRNALIHALL  191 (285)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTC-CCTTSCCHHHHHHH
T ss_pred             HHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCc-cCCCCCCHHHHHHH
Confidence            8888888888888888887766          66788888888888888888888876 888776 46667888888888


Q ss_pred             cCC----HHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHH-cCCCccccccccHHHHHHH
Q psy5490         139 GGF----LDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLD-SGAQEMQTKHIDILEFKKR  199 (352)
Q Consensus       139 ~g~----~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~  199 (352)
                      .++    .+++++|+++|++++.   .|+||||+|+..|+.+++++|++ +|++.+..+..+.++....
T Consensus       192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A  260 (285)
T 1wdy_A          192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA  260 (285)
T ss_dssp             CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHH
Confidence            887    7788888888887654   57788888888888888888887 7777777666665555443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.5e-34  Score=268.95  Aligned_cols=193  Identities=21%  Similarity=0.173  Sum_probs=167.7

Q ss_pred             CCCCCccHHHHHHcCC-------------CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           2 PTDSFESPLTLAACGG-------------HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~-------------~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      +|..|+|+||+|+..|             ++|..|..|+||||+|+..|+.++|++|+++|++++     +..|+||||+
T Consensus        16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-----~~~g~t~L~~   90 (364)
T 3ljn_A           16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS-----LWHGQKPIHL   90 (364)
T ss_dssp             CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC-----CBTTBCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc-----ccCCCCHHHH
Confidence            4677999999999644             567779999999999999999999999999999642     2468999999


Q ss_pred             HHHcCCHHHHHHHHHc----CCCCCC-----------------cCCCCChHHHHHHHcC--cHHHHHHHHhcCCCccccc
Q psy5490          69 AACGGHVDLALLLIER----GANIEE-----------------VNDEGYTPLMEAAREG--HEEMVCVLLQKGAKINAHT  125 (352)
Q Consensus        69 A~~~g~~~~v~~Ll~~----g~~~~~-----------------~d~~G~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~  125 (352)
                      |+..|+.++|++|+++    |.+++.                 .|..|.||||+|+..|  +.++|++|+++|++++. .
T Consensus        91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~-~  169 (364)
T 3ljn_A           91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA-K  169 (364)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC-C
T ss_pred             HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc-c
Confidence            9999999999999998    777776                 8888999999999999  99999999999999998 4


Q ss_pred             ccccCcHHHHHHHcCCHHHHHHHHHcCCC-----CCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHH
Q psy5490         126 EETQETALTLACCGGFLDVADFLLKNGAN-----IEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFK  197 (352)
Q Consensus       126 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~  197 (352)
                      +..|.||||+|+..|+.+++++|+++|++     +|.   .|+||||+|+..|+.++|++|+++|++.+..+..+.+++.
T Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~  249 (364)
T 3ljn_A          170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLY  249 (364)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            67799999999999999999999999888     654   6889999999999999999999999998888777666655


Q ss_pred             HHh
Q psy5490         198 KRK  200 (352)
Q Consensus       198 ~~~  200 (352)
                      ...
T Consensus       250 ~A~  252 (364)
T 3ljn_A          250 LSV  252 (364)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-33  Score=267.98  Aligned_cols=196  Identities=30%  Similarity=0.395  Sum_probs=176.1

Q ss_pred             CCCCCccHHHHHHcCCC-------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           2 PTDSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~-------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      .|..|+|+||+|+..++             ++..+..|.||||+|+..|+.+++++|++.|+++   +..+..|.||||+
T Consensus       175 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~  251 (437)
T 1n11_A          175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA---NAESVQGVTPLHL  251 (437)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHH
Confidence            46788999999986554             5556788999999999999999999999999984   5667889999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHH
Q psy5490          69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL  148 (352)
Q Consensus        69 A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  148 (352)
                      |+..|+.++|++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|
T Consensus       252 A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~L  330 (437)
T 1n11_A          252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA-TTRMGYTPLHVASHYGNIKLVKFL  330 (437)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCSSCCCHHHHHHHSSCSHHHHHH
T ss_pred             HHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCC-CCCCCCCHHHHHHHcCcHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998 577899999999999999999999


Q ss_pred             HHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHHhh
Q psy5490         149 LKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQ  201 (352)
Q Consensus       149 l~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~  201 (352)
                      +++|+++|.   .|+||||+|+..|+.++|++|+++|++....+..+.+++....+
T Consensus       331 l~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~  386 (437)
T 1n11_A          331 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR  386 (437)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHH
T ss_pred             HhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            999999865   68899999999999999999999999999888877777665543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=9.1e-35  Score=270.36  Aligned_cols=184  Identities=20%  Similarity=0.224  Sum_probs=166.6

Q ss_pred             CCCCCCccHHHHHHcCCCCCCC-----------CCCCChHHHHHHHcCCHHHHHHHHHc----CCCCCC-----------
Q psy5490           1 MPTDSFESPLTLAACGGHVNMP-----------TDSFESPLTLAACGGHVDLALLLIER----GANIEE-----------   54 (352)
Q Consensus         1 ~~~~~g~t~L~lA~~~~~~n~~-----------d~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~-----------   54 (352)
                      ++|..|+|+||+|+..|+++++           +.+|+||||+|+..|+.+++++|+++    |.+++.           
T Consensus        48 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  127 (364)
T 3ljn_A           48 IQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVN  127 (364)
T ss_dssp             CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEE
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhh
Confidence            3688999999999998876543           45899999999999999999999999    776432           


Q ss_pred             ---cCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCC-----cccc
Q psy5490          55 ---VNMPTDSFESPLTLAACGG--HVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAK-----INAH  124 (352)
Q Consensus        55 ---~n~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~  124 (352)
                         .+..+..|+||||+|+..|  +.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++     ++. 
T Consensus       128 ~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-  206 (364)
T 3ljn_A          128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY-  206 (364)
T ss_dssp             EETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTC-
T ss_pred             hhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccc-
Confidence               1125678999999999999  99999999999999999999999999999999999999999999999     887 


Q ss_pred             cccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q psy5490         125 TEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQE  185 (352)
Q Consensus       125 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  185 (352)
                      .+..|+||||+|+..|+.+++++|+++|++++.   .|+||||+|+..|+.++|++|+++|++.
T Consensus       207 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          207 ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             CCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCch
Confidence            577899999999999999999999999999865   6889999999999999999999998764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.6e-33  Score=240.75  Aligned_cols=182  Identities=32%  Similarity=0.374  Sum_probs=166.0

Q ss_pred             cCCCCCCC-CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCcC
Q psy5490          15 CGGHVNMP-TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA-NIEEVN   92 (352)
Q Consensus        15 ~~~~~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~d   92 (352)
                      .+.+++.. |..|+||||+|+..|+.+++++|+++|+++   +..+..|+||||+|+..|+.+++++|++++. +++..+
T Consensus        13 ~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~   89 (223)
T 2f8y_A           13 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM   89 (223)
T ss_dssp             TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCC
T ss_pred             cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence            45666665 789999999999999999999999999995   5667899999999999999999999999987 899999


Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHc
Q psy5490          93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQE  169 (352)
Q Consensus        93 ~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~  169 (352)
                      ..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++.   .|.||||+|+..
T Consensus        90 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  168 (223)
T 2f8y_A           90 HDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE  168 (223)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCCCcHHHHHHHhCcHHHHHHHHHcCCCCcC-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHc
Confidence            9999999999999999999999999999998 467799999999999999999999999999865   688999999999


Q ss_pred             CCHHHHHHHHHcCCCccccccccHHHHHHHh
Q psy5490         170 GHLELVRYLLDSGAQEMQTKHIDILEFKKRK  200 (352)
Q Consensus       170 ~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  200 (352)
                      |+.+++++|+++|++....+..+.++.....
T Consensus       169 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  199 (223)
T 2f8y_A          169 GSYETAKVLLDHFANRDITDHMDRLPRDIAQ  199 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCccccccCCCHHHHHH
Confidence            9999999999999999888777766655443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=8.7e-35  Score=257.73  Aligned_cols=182  Identities=19%  Similarity=0.172  Sum_probs=162.0

Q ss_pred             CCCCccHHHHHHcCCCCCCC---------------------CCCCChHHHHHH---HcCCHHHHHHHHHcCCCCCC----
Q psy5490           3 TDSFESPLTLAACGGHVNMP---------------------TDSFESPLTLAA---CGGHVDLALLLIERGANIEE----   54 (352)
Q Consensus         3 ~~~g~t~L~lA~~~~~~n~~---------------------d~~g~t~L~~A~---~~g~~~~v~~Ll~~g~~~~~----   54 (352)
                      |.+|+++||.|+..|+++.+                     |..|+||||+|+   ..|+.+++++|++.|++...    
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            67899999999998887642                     266999999999   67999999999999865322    


Q ss_pred             ----cCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcC--------------CCCChHHHHHHHcCcHHHHHHHHh
Q psy5490          55 ----VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN--------------DEGYTPLMEAAREGHEEMVCVLLQ  116 (352)
Q Consensus        55 ----~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d--------------~~G~t~L~~A~~~g~~~~v~~Ll~  116 (352)
                          ++..|..|+||||+|+..|+.++|++|+++|++++.++              ..|+||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  161 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE  161 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                23445689999999999999999999999999999998              689999999999999999999999


Q ss_pred             ---cCCCcccccccccCcHHHHHHHcCC---------HHHHHHHHHcCCCC----------CCCCCCHHHHHHHcCCHHH
Q psy5490         117 ---KGAKINAHTEETQETALTLACCGGF---------LDVADFLLKNGANI----------ELGASTPLMEAAQEGHLEL  174 (352)
Q Consensus       117 ---~g~~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~----------~~~g~t~L~~A~~~~~~~~  174 (352)
                         +|++++. .+..|+||||+|+..++         .+++++|+++|+++          |..|+||||+|+..|+.++
T Consensus       162 ~~~~ga~~~~-~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~  240 (260)
T 3jxi_A          162 NGHKQADLRR-QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI  240 (260)
T ss_dssp             CSSCCCCTTC-CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccccCCCCcc-cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHH
Confidence               9999998 57789999999999887         79999999999876          3478999999999999999


Q ss_pred             HHHHHHcCCCc
Q psy5490         175 VRYLLDSGAQE  185 (352)
Q Consensus       175 v~~Ll~~ga~~  185 (352)
                      |++|+++|++.
T Consensus       241 v~~Ll~~g~~~  251 (260)
T 3jxi_A          241 FQHIIRREIAD  251 (260)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhCCCc
Confidence            99999998754

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=8.4e-34  Score=240.11  Aligned_cols=160  Identities=25%  Similarity=0.257  Sum_probs=151.3

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChH
Q psy5490          19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTP   98 (352)
Q Consensus        19 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~   98 (352)
                      +|..|..|+||||+|+..|+.+++++|+++|+++   +..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  104 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL---EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP  104 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc---ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            5778999999999999999999999999999985   5667899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHH
Q psy5490          99 LMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELV  175 (352)
Q Consensus        99 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v  175 (352)
                      ||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++.   .|.|||++|+..|+.+++
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v  183 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGANVND-RNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI  183 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHH
Confidence            9999999999999999999999998 577899999999999999999999999999865   789999999999999999


Q ss_pred             HHHHHcC
Q psy5490         176 RYLLDSG  182 (352)
Q Consensus       176 ~~Ll~~g  182 (352)
                      ++|+++|
T Consensus       184 ~~Ll~~~  190 (192)
T 2rfm_A          184 KIFTEVR  190 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            9999865

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5.3e-34  Score=249.31  Aligned_cols=181  Identities=26%  Similarity=0.295  Sum_probs=160.4

Q ss_pred             CCCCCccHHHHHHcCC-------------CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCCChHHH
Q psy5490           2 PTDSFESPLTLAACGG-------------HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIE-EVNMPTDSFESPLT   67 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~-------------~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~n~~~~~g~t~Lh   67 (352)
                      +|..|+|+||+|+..|             +++..|..|+||||+|+..|+.+++++|++.|.... .++..+..|+||||
T Consensus        42 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~  121 (241)
T 1k1a_A           42 YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH  121 (241)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHH
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHH
Confidence            5788999999999654             566778999999999999999999999999987211 14667789999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcC-CCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHH
Q psy5490          68 LAACGGHVDLALLLIERGANIEEVN-DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVAD  146 (352)
Q Consensus        68 ~A~~~g~~~~v~~Ll~~g~~~~~~d-~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~  146 (352)
                      +|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.++++
T Consensus       122 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~  200 (241)
T 1k1a_A          122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA-QMYSGSSALHSASGRGLLPLVR  200 (241)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999999999998 7899999999999999999999999999998 4778999999999999999999


Q ss_pred             HHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCC
Q psy5490         147 FLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGA  183 (352)
Q Consensus       147 ~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga  183 (352)
                      +|+++|++++.   .|+|||++|+..|+.++++.|+++++
T Consensus       201 ~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          201 TLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             HHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             HHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            99999999865   68899999999999999999998765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-32  Score=246.10  Aligned_cols=178  Identities=28%  Similarity=0.374  Sum_probs=102.1

Q ss_pred             cCCCCCCC-CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Q psy5490          15 CGGHVNMP-TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVND   93 (352)
Q Consensus        15 ~~~~~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~   93 (352)
                      .+.+++.. +..|+||||+|+..|+.+++++|+++|+++   +..+..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        27 ~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  103 (285)
T 1wdy_A           27 GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP---VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF  103 (285)
T ss_dssp             TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT
T ss_pred             cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCc
Confidence            44555555 445566666666666666666666666553   33445556666666666666666666666666666666


Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhcCCCccccc---------ccccCcHHHHHHHcCCHHHHHHHHHc-CCCCCC---CCC
Q psy5490          94 EGYTPLMEAAREGHEEMVCVLLQKGAKINAHT---------EETQETALTLACCGGFLDVADFLLKN-GANIEL---GAS  160 (352)
Q Consensus        94 ~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~---------~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~---~g~  160 (352)
                      .|+||||+|+..|+.+++++|+++|++++...         +..|.||||+|+..|+.+++++|+++ |++++.   .|+
T Consensus       104 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  183 (285)
T 1wdy_A          104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR  183 (285)
T ss_dssp             TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSC
T ss_pred             ccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            66666666666666666666666665555421         33455666666666666666666654 555433   455


Q ss_pred             CHHHHHHHcCC----HHHHHHHHHcCCCccccccccHHH
Q psy5490         161 TPLMEAAQEGH----LELVRYLLDSGAQEMQTKHIDILE  195 (352)
Q Consensus       161 t~L~~A~~~~~----~~~v~~Ll~~ga~~~~~~~~~~~~  195 (352)
                      ||||+|+..++    .+++++|+++|++.+..+..+.++
T Consensus       184 t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~  222 (285)
T 1wdy_A          184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP  222 (285)
T ss_dssp             CHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcH
Confidence            66666666555    556666666666555554444433

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2e-33  Score=262.55  Aligned_cols=180  Identities=22%  Similarity=0.279  Sum_probs=163.0

Q ss_pred             CCCCCccHHHHHHc-------------CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCCChH
Q psy5490           2 PTDSFESPLTLAAC-------------GGHVNMPTDSFESPLTLAACGGHVDLALLLIERG---ANIEEVNMPTDSFESP   65 (352)
Q Consensus         2 ~~~~g~t~L~lA~~-------------~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~n~~~~~g~t~   65 (352)
                      +|.+|+||||+|+.             |.+++..|..|.||||+|+..|+.+++++|+++|   ++   ++..+..|+||
T Consensus       162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---~~~~d~~g~t~  238 (373)
T 2fo1_E          162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD---IEELDRNGMTA  238 (373)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT---TSCCCTTSCCH
T ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC---hhhcCCCCCCH
Confidence            57899999999995             4567778999999999999999999999999988   66   46677999999


Q ss_pred             HHHHHHcC---CHHHHHHHHHcCCCCCC--------cCCCCChHHHHHHHcCcHHHHHHHHhcC-CCcccccccccCcHH
Q psy5490          66 LTLAACGG---HVDLALLLIERGANIEE--------VNDEGYTPLMEAAREGHEEMVCVLLQKG-AKINAHTEETQETAL  133 (352)
Q Consensus        66 Lh~A~~~g---~~~~v~~Ll~~g~~~~~--------~d~~G~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~t~L  133 (352)
                      ||+|+..+   +.+++++|+++|++++.        .|..|+||||+|+..|+.++|++|++++ ++++. .+..|.|||
T Consensus       239 L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~-~d~~g~TpL  317 (373)
T 2fo1_E          239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK-QDEDGKTPI  317 (373)
T ss_dssp             HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC-CCTTCCCHH
T ss_pred             HHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccC-cCCCCCCHH
Confidence            99999998   89999999999999986        6779999999999999999999999886 99998 577899999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q psy5490         134 TLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQE  185 (352)
Q Consensus       134 ~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  185 (352)
                      |+|+..|+.+++++|+++|++++.   .|+|||++|+..|+.++|++|++++++.
T Consensus       318 ~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          318 MLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            999999999999999999999865   6889999999999999999999998864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.6e-33  Score=257.98  Aligned_cols=196  Identities=28%  Similarity=0.364  Sum_probs=174.1

Q ss_pred             CCCCccHHHHHHcCCC--------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           3 TDSFESPLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         3 ~~~g~t~L~lA~~~~~--------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      ++.+.++||.|+..|+              ++..|..|+||||+|+..|+.++|++|+++|+++   +..+..|+||||+
T Consensus        21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~   97 (351)
T 3utm_A           21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV---HAKDKGGLVPLHN   97 (351)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHH
T ss_pred             ccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCcHHHH
Confidence            4567899999997665              4556889999999999999999999999999995   6667899999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccc------------------------
Q psy5490          69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH------------------------  124 (352)
Q Consensus        69 A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------------------------  124 (352)
                      |+..|+.++|++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..                        
T Consensus        98 A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~  177 (351)
T 3utm_A           98 ACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF  177 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999997652                        


Q ss_pred             -----------------------------cccccCcHHHHHHHc---CCHHHHHHHHHcCCCCCC---CCCCHHHHHHHc
Q psy5490         125 -----------------------------TEETQETALTLACCG---GFLDVADFLLKNGANIEL---GASTPLMEAAQE  169 (352)
Q Consensus       125 -----------------------------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~  169 (352)
                                                   .+..|.|+||+|+..   +..+++++|+++|++++.   .|+||||+|+..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  257 (351)
T 3utm_A          178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAER  257 (351)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             cccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHc
Confidence                                         234577999999999   558999999999999865   688999999999


Q ss_pred             CCHHHHHHHHHcCCCccccccccHHHHHHHhh
Q psy5490         170 GHLELVRYLLDSGAQEMQTKHIDILEFKKRKQ  201 (352)
Q Consensus       170 ~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~  201 (352)
                      |+.+++++|+++|++.+..+..+.++......
T Consensus       258 g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~  289 (351)
T 3utm_A          258 AHNDVMEVLHKHGAKMNALDSLGQTALHRAAL  289 (351)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            99999999999999999888777666655443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-33  Score=255.20  Aligned_cols=193  Identities=29%  Similarity=0.376  Sum_probs=168.9

Q ss_pred             CCCccHHHHHHcC-------------CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHH
Q psy5490           4 DSFESPLTLAACG-------------GHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA   70 (352)
Q Consensus         4 ~~g~t~L~lA~~~-------------~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~   70 (352)
                      ..|.|+||.||..             .++|..|..|.||||+|+..|+.+++++|+++|+++   +..|..|+||||+|+
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI---NQPDNEGWIPLHAAA  114 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHH
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCcHHHHHH
Confidence            4578999999964             456777999999999999999999999999999995   666789999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhc-CCCccc-------------------------c
Q psy5490          71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQK-GAKINA-------------------------H  124 (352)
Q Consensus        71 ~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~-------------------------~  124 (352)
                      ..|+.++|++|+++|++++..|..|.||||+|+..++.+++++|+.. +.+++.                         .
T Consensus       115 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  194 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (299)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhh
Confidence            99999999999999999999999999999999999999999877754 444332                         2


Q ss_pred             cccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHH
Q psy5490         125 TEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKR  199 (352)
Q Consensus       125 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~  199 (352)
                      .+..|.||||+|+..|+.+++++|+++|++++.   .|+||||+|+..|+.+++++|+++|++....+..+.+++...
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  272 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            345689999999999999999999999999865   689999999999999999999999999988877766654443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.9e-33  Score=263.78  Aligned_cols=190  Identities=33%  Similarity=0.410  Sum_probs=156.0

Q ss_pred             CCCCCccHHHHHHcCC-------------CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           2 PTDSFESPLTLAACGG-------------HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~-------------~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      .++.|+|+||+|+..|             ++|..+..|.||||+|+..|+.+++++|+++|+++   +.++..|+||||+
T Consensus        10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~   86 (437)
T 1n11_A           10 GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV---NAKAKDDQTPLHC   86 (437)
T ss_dssp             -----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS---SCCCTTSCCHHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCCCCCCCCHHHH
Confidence            4678999999999644             45666888999999999999999999999999884   6667889999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHH
Q psy5490          69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL  148 (352)
Q Consensus        69 A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  148 (352)
                      |+..|+.++|++|+++|++++..+..|+||||+|+..|+.+++++|++++++++. .+..|.||||+|+..|+.+++++|
T Consensus        87 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~L  165 (437)
T 1n11_A           87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC-MTKKGFTPLHVAAKYGKVRVAELL  165 (437)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcC-CCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888877 466688899999999999999999


Q ss_pred             HHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHH
Q psy5490         149 LKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILE  195 (352)
Q Consensus       149 l~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~  195 (352)
                      +++|++++.   .|.||||+|+..|+.+++++|+++|++....+..+..+
T Consensus       166 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  215 (437)
T 1n11_A          166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP  215 (437)
T ss_dssp             HHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCH
T ss_pred             HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH
Confidence            988887754   57788888888888888888888888776655444333

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=2.9e-33  Score=229.96  Aligned_cols=156  Identities=26%  Similarity=0.362  Sum_probs=143.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHH
Q psy5490          24 DSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAA  103 (352)
Q Consensus        24 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~  103 (352)
                      ....|+||+|+..|+.+++++|+++|+++   +..+..|+||||+|+. |+.+++++|+++|++++.+|..|+||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNV---NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAA   78 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCT---TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCc---cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            35679999999999999999999999985   6667899999999999 9999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCC-CC---CCCCCHHHHHHHcCCHHHHHHHH
Q psy5490         104 REGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN-IE---LGASTPLMEAAQEGHLELVRYLL  179 (352)
Q Consensus       104 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~---~~g~t~L~~A~~~~~~~~v~~Ll  179 (352)
                      ..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++ ++   ..|+||||+|+..|+.+++++|+
T Consensus        79 ~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  157 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ  157 (162)
T ss_dssp             HHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999998 577899999999999999999999999987 33   47899999999999999999999


Q ss_pred             HcCCC
Q psy5490         180 DSGAQ  184 (352)
Q Consensus       180 ~~ga~  184 (352)
                      ++||+
T Consensus       158 ~~GAd  162 (162)
T 1ihb_A          158 ANGAG  162 (162)
T ss_dssp             HTC--
T ss_pred             HhCCC
Confidence            99985

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=6.3e-33  Score=230.03  Aligned_cols=156  Identities=35%  Similarity=0.482  Sum_probs=145.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHH
Q psy5490          23 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEA  102 (352)
Q Consensus        23 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A  102 (352)
                      ...+.++|++|++.|+.++|++|+++|+++   +..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV---NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA   87 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            345679999999999999999999999985   66778999999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHH
Q psy5490         103 AREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLL  179 (352)
Q Consensus       103 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll  179 (352)
                      +..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++.   .|.|||++|+..|+.+++++|+
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADVNA-NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ  166 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999998 477799999999999999999999999999754   6889999999999999999999


Q ss_pred             HcC
Q psy5490         180 DSG  182 (352)
Q Consensus       180 ~~g  182 (352)
                      ++|
T Consensus       167 ~~G  169 (169)
T 2y1l_E          167 KLN  169 (169)
T ss_dssp             TC-
T ss_pred             HcC
Confidence            876

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.9e-33  Score=256.60  Aligned_cols=157  Identities=30%  Similarity=0.384  Sum_probs=89.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCCCcCCCCChH
Q psy5490          24 DSFESPLTLAACGGHVDLALLLIE-RGANIEEVNMPTDSFESPLTLAACGGH----VDLALLLIERGANIEEVNDEGYTP   98 (352)
Q Consensus        24 ~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~n~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~g~~~~~~d~~G~t~   98 (352)
                      ..|.||||+|+..|+.++|++||+ .|+++   +..+..|+|+||+++..+.    .+++++|+++|++++.+|..|+||
T Consensus       166 ~~g~T~L~~A~~~g~~~~v~~LL~~~gad~---n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~  242 (337)
T 4g8k_A          166 KGGATALMDAAEKGHVEVLKILLDEMGADV---NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP  242 (337)
T ss_dssp             TCSCCHHHHHHHHTCHHHHHHHHHHSCCCT---TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCCcHHHHHHHCCCHHHHHHHHhccCCCc---CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            345566666666666666666653 35553   4444555666655554332    235555666666666666666666


Q ss_pred             HHHHHHcCcHHHHHHHHhc-CCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCHHHHHHHcCCHHHHHH
Q psy5490          99 LMEAAREGHEEMVCVLLQK-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRY  177 (352)
Q Consensus        99 L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~g~t~L~~A~~~~~~~~v~~  177 (352)
                      ||+|+..|+.+++++|++. |++++. .+..|+||||+|+..|+.++|++||++|+++|.  .+|||+|++.|+.++|++
T Consensus       243 L~~a~~~~~~~~v~~Ll~~~~~~vn~-~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~--~~~L~~A~~~~~~~iv~~  319 (337)
T 4g8k_A          243 LILAVEKKHLGLVQRLLEQEHIEIND-TDSDGKTALLLAVELKLKKIAELLCKRGASTDC--GDLVMTARRNYDHSLVKV  319 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHTSTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT--CCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHhcCCcccC-cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--CCHHHHHHHcCCHHHHHH
Confidence            6666666666666666553 555555 344556666666666666666666666665542  346666666666666666


Q ss_pred             HHHcCCCcc
Q psy5490         178 LLDSGAQEM  186 (352)
Q Consensus       178 Ll~~ga~~~  186 (352)
                      |+++||+++
T Consensus       320 Ll~~GA~~d  328 (337)
T 4g8k_A          320 LLSHGAKED  328 (337)
T ss_dssp             HHHTTCCC-
T ss_pred             HHHCcCCCC
Confidence            666666544

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=243.24  Aligned_cols=196  Identities=24%  Similarity=0.322  Sum_probs=172.8

Q ss_pred             CCCCCccHHHHHHcCC-------------CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           2 PTDSFESPLTLAACGG-------------HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~-------------~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      .|++|.++|+.|+..|             +++..+..|.||||+|+..|+.+++++|+++|.++..  ..+..|+||||+
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~~~t~L~~   82 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ--LGGDLNSTPLHW   82 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CBTTTTBCHHHH
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchh--hcCCcCCChhHH
Confidence            3788999999999655             4566788999999999999999999999999998643  334568999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCC-HHHHHH
Q psy5490          69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGF-LDVADF  147 (352)
Q Consensus        69 A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~-~~~v~~  147 (352)
                      |+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..++ .+++++
T Consensus        83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~~  161 (240)
T 3eu9_A           83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM-MDQNGMTPLMWAAYRTHSVDPTRL  161 (240)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHCCSSTTHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccc-cCCCCCcHHHHHHHhCChHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998 57779999999997666 899999


Q ss_pred             HHHcCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHHh
Q psy5490         148 LLKNGANIEL----GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRK  200 (352)
Q Consensus       148 Ll~~g~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  200 (352)
                      |++.|++++.    .|.||||+|+..|+.+++++|+++|++....+..+.++.....
T Consensus       162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  218 (240)
T 3eu9_A          162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK  218 (240)
T ss_dssp             HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHH
T ss_pred             HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            9999999864    5779999999999999999999999999888777666655443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=8.4e-33  Score=229.36  Aligned_cols=139  Identities=37%  Similarity=0.550  Sum_probs=127.0

Q ss_pred             cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Q psy5490          15 CGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDE   94 (352)
Q Consensus        15 ~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~   94 (352)
                      .|.++|..|.+|+||||+|+..++.+++++|+++|+++   +.+|..|+||||+|+..|+.++|++|+++|++++.+|.+
T Consensus        26 ~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~---~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~  102 (169)
T 4gpm_A           26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV---NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD  102 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch---hhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCC
Confidence            45678888999999999999999999999999999995   667799999999999999999999999999999999999


Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy5490          95 GYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL  157 (352)
Q Consensus        95 G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  157 (352)
                      |+||||+|+..|+.++|++|+++|++++. .+..|+||||+|+..|+.+++++|+++|+++|.
T Consensus       103 G~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          103 GRTPLHHAAENGHKEVVKLLISKGADVNT-SDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            99999999999999999999999999998 577899999999999999999999999999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=7.1e-33  Score=228.98  Aligned_cols=157  Identities=20%  Similarity=0.231  Sum_probs=147.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHH
Q psy5490          25 SFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAR  104 (352)
Q Consensus        25 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~  104 (352)
                      .|.||||+|+..|+.+++++|++.|.+   ++..+..|+||||+|+..|+.++|++|+++|++++.++..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV---INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC---cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            578999999999999999999999988   46677999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHc
Q psy5490         105 EGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDS  181 (352)
Q Consensus       105 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~  181 (352)
                      .|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++.   .|.|||++|+..|+.+++++|+++
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVNE-YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCc-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            9999999999999999998 577899999999999999999999999999754   688999999999999999999998


Q ss_pred             CCCc
Q psy5490         182 GAQE  185 (352)
Q Consensus       182 ga~~  185 (352)
                      +++.
T Consensus       158 ~~~~  161 (167)
T 3v31_A          158 LLKL  161 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=4.6e-33  Score=231.26  Aligned_cols=164  Identities=23%  Similarity=0.294  Sum_probs=148.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHc
Q psy5490          26 FESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE  105 (352)
Q Consensus        26 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~  105 (352)
                      +.+|||+|+..|+++++++|++.|.+.  ++..+..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNL--VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG   79 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGG--GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCccc--ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC
Confidence            468999999999999999999998763  567789999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcC
Q psy5490         106 GHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSG  182 (352)
Q Consensus       106 g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g  182 (352)
                      |+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++.   .|+||||+|+..|+.+++++|+++|
T Consensus        80 ~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           80 GYTDIVGLLLERDVDINI-YDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             TCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            999999999999999998 477899999999999999999999999999865   6889999999999999999999999


Q ss_pred             CCcccccccc
Q psy5490         183 AQEMQTKHID  192 (352)
Q Consensus       183 a~~~~~~~~~  192 (352)
                      ++....+..+
T Consensus       159 ~~~~~~~~~~  168 (172)
T 3v30_A          159 LKLFQSNLVP  168 (172)
T ss_dssp             HHHSCC----
T ss_pred             HHHhcccCCC
Confidence            8766555443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=239.05  Aligned_cols=182  Identities=26%  Similarity=0.346  Sum_probs=162.7

Q ss_pred             CCCCCccHHHHHHcCCCCCCC--------------CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHH
Q psy5490           2 PTDSFESPLTLAACGGHVNMP--------------TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLT   67 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~~n~~--------------d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh   67 (352)
                      +|..|.|+||+|+..|+++++              +..|.||||+|+..|+.+++++|++.|+++   +..+..|.||||
T Consensus        38 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l~  114 (240)
T 3eu9_A           38 PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP---SLIDGEGCSCIH  114 (240)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHH
T ss_pred             CCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHH
Confidence            578899999999988775432              345899999999999999999999999995   556789999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCc-HHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHH
Q psy5490          68 LAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGH-EEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVAD  146 (352)
Q Consensus        68 ~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~  146 (352)
                      +|+..|+.+++++|+++|++++.++..|.||||+|+..++ .+++++|++.|++++......|.||||+|+..|+.++++
T Consensus       115 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  194 (240)
T 3eu9_A          115 LAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS  194 (240)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999997766 899999999999999865558999999999999999999


Q ss_pred             HHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q psy5490         147 FLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEM  186 (352)
Q Consensus       147 ~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  186 (352)
                      +|+++|++++.   .|+|||++|++.|+.+++++|++++++..
T Consensus       195 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          195 LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             HHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence            99999999865   68999999999999999999999988654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.4e-32  Score=237.49  Aligned_cols=180  Identities=28%  Similarity=0.369  Sum_probs=165.4

Q ss_pred             CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Q psy5490          17 GHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY   96 (352)
Q Consensus        17 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~   96 (352)
                      .+++..|..|.||||+|+..|+.+++++|+++|+++   +..+..|+||||+|+..|+.++|++|+++|++++.++..|.
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   78 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI---DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS   78 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSC
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc---CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC
Confidence            467888999999999999999999999999999995   55678999999999999999999999999999999999999


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcC-CCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCH
Q psy5490          97 TPLMEAAREGHEEMVCVLLQKG-AKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHL  172 (352)
Q Consensus        97 t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~  172 (352)
                      ||||+|+..|+.+++++|+++| .+++. .+..|.||||+|+..|+.+++++|+++|++++.   .|.||||+|+..|+.
T Consensus        79 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  157 (237)
T 3b7b_A           79 TCLHLAAKKGHYEVVQYLLSNGQMDVNC-QDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV  157 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCccc-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH
Confidence            9999999999999999999998 78887 577799999999999999999999999999865   688999999999999


Q ss_pred             HHHHHHHHcCCCccccccccHHHHHHHh
Q psy5490         173 ELVRYLLDSGAQEMQTKHIDILEFKKRK  200 (352)
Q Consensus       173 ~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  200 (352)
                      +++++|+++|++....+..+.++.....
T Consensus       158 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~  185 (237)
T 3b7b_A          158 DIAEILLAAKCDLHAVNIHGDSPLHIAA  185 (237)
T ss_dssp             HHHHHHHTTTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            9999999999999888776666655443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3e-32  Score=250.74  Aligned_cols=169  Identities=25%  Similarity=0.270  Sum_probs=144.8

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCc-------CCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCc
Q psy5490          20 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV-------NMPTDSFESPLTLAACGGHVDLALLLIE-RGANIEEV   91 (352)
Q Consensus        20 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-------n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~   91 (352)
                      +..|..|.||||+|+..|+.+++++|+++|++++..       ...+..|.||||+|+..|+.++|++|++ .|++++.+
T Consensus       119 ~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~  198 (337)
T 4g8k_A          119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC  198 (337)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCC
T ss_pred             hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCcc
Confidence            344778889999999999999999999999886532       2345678999999999999999999996 58999999


Q ss_pred             CCCCChHHHHHHHcCc----HHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHc-CCCCCC---CCCCHH
Q psy5490          92 NDEGYTPLMEAAREGH----EEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN-GANIEL---GASTPL  163 (352)
Q Consensus        92 d~~G~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~---~g~t~L  163 (352)
                      |..|.|+||+++..+.    .+++++|+++|++++. .+..|+||||+|+..|+.+++++|++. |+++|.   .|+|||
T Consensus       199 d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~-~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL  277 (337)
T 4g8k_A          199 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL  277 (337)
T ss_dssp             CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTC-CCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHH
T ss_pred             CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHH
Confidence            9999999998876543    4688999999999998 477899999999999999999999985 777754   789999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCccccc
Q psy5490         164 MEAAQEGHLELVRYLLDSGAQEMQTK  189 (352)
Q Consensus       164 ~~A~~~~~~~~v~~Ll~~ga~~~~~~  189 (352)
                      |+|++.|+.++|++|+++|++.+..+
T Consensus       278 ~~A~~~g~~~iv~~Ll~~GAd~n~~~  303 (337)
T 4g8k_A          278 LLAVELKLKKIAELLCKRGASTDCGD  303 (337)
T ss_dssp             HHHHHTTCHHHHHHHHTTSCSSTTCC
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            99999999999999999999987654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=8.6e-33  Score=239.70  Aligned_cols=173  Identities=24%  Similarity=0.285  Sum_probs=156.0

Q ss_pred             CCCCCccHHHHHHcCCCC---------------CC-CCCCCChHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCCC
Q psy5490           2 PTDSFESPLTLAACGGHV---------------NM-PTDSFESPLTLAACGGHVDLALLLIERG--ANIEEVNMPTDSFE   63 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~~---------------n~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~n~~~~~g~   63 (352)
                      +|..|+|+||+|+..|+.               +. .+..|+||||+|+..|+.+++++|+++|  ++   ++..+..|+
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~~~g~  108 (228)
T 2dzn_A           32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD---LNKITNQGV  108 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCC---TTCCCTTCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc---cccCCcCCC
Confidence            588999999999976553               22 5778999999999999999999999999  65   466778999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcC-CCcccccccccCcHHHHHHHcCCH
Q psy5490          64 SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKG-AKINAHTEETQETALTLACCGGFL  142 (352)
Q Consensus        64 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~g~~  142 (352)
                      ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++| ++++. .+..|+||||+|+..|+.
T Consensus       109 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~d~~g~t~L~~A~~~~~~  187 (228)
T 2dzn_A          109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW-QDKQGWTPLFHALAEGHG  187 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCC-CCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccC-cCCCCCCHHHHHHHcCCH
Confidence            9999999999999999999999999999999999999999999999999999999 99998 577899999999999999


Q ss_pred             HHHHHHH-HcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHc
Q psy5490         143 DVADFLL-KNGANIEL---GASTPLMEAAQEGHLELVRYLLDS  181 (352)
Q Consensus       143 ~~v~~Ll-~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~  181 (352)
                      +++++|+ ++|++++.   .|+|||++|+..   +++++|+++
T Consensus       188 ~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          188 DAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             HHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             HHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence            9999999 89999865   789999999754   677777754

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=6.7e-33  Score=249.50  Aligned_cols=174  Identities=19%  Similarity=0.195  Sum_probs=159.9

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Q psy5490          16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEG   95 (352)
Q Consensus        16 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G   95 (352)
                      .+++|..|.+|+||||+|+..|+.+++++|+++|+++   +..  +|+||||+|+..|+.++|++|+++|++++.+|..|
T Consensus        21 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g   95 (285)
T 3kea_A           21 SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK---NLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG   95 (285)
T ss_dssp             STTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG---SCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTS
T ss_pred             hCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            3579999999999999999999999999999999985   433  48999999999999999999999999999999999


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCccccccccc-CcHHHHHHHcCCHHHHHHHHHcCCCC-CC-CCCCHHHHHHHcCCH
Q psy5490          96 YTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQ-ETALTLACCGGFLDVADFLLKNGANI-EL-GASTPLMEAAQEGHL  172 (352)
Q Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~-~g~t~L~~A~~~~~~  172 (352)
                      +||||+|+..|+.+++++|+++|++++.. +..| .||||+|+..|+.+++++|+++|++. +. .|+||||+|+..|+.
T Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~  174 (285)
T 3kea_A           96 NTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHV  174 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGGGC-SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCcc-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChH
Confidence            99999999999999999999999999985 5556 89999999999999999999999887 33 688999999999999


Q ss_pred             HHHHHHHHcCCCccccccccHHH
Q psy5490         173 ELVRYLLDSGAQEMQTKHIDILE  195 (352)
Q Consensus       173 ~~v~~Ll~~ga~~~~~~~~~~~~  195 (352)
                      +++++|+++|++.+..+..+.++
T Consensus       175 ~~v~~Ll~~gad~n~~~~~g~t~  197 (285)
T 3kea_A          175 DMMILLLDYMTSTNTNNSLLFIP  197 (285)
T ss_dssp             HHHHHHHHHHHHTCTTCCCBCCT
T ss_pred             HHHHHHHHcCCCCCcccCCCCCh
Confidence            99999999999988887766443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=5.2e-32  Score=235.64  Aligned_cols=173  Identities=25%  Similarity=0.316  Sum_probs=154.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC-----CCcCCCCChH
Q psy5490          25 SFESPLTLAACGGHVDLALLLIER-GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI-----EEVNDEGYTP   98 (352)
Q Consensus        25 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~-----~~~d~~G~t~   98 (352)
                      .|+||||+|+..|+.+++++|++. |+++   +..|..|+||||+|+..|+.++|++|+++|+++     +..|..|+||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~   78 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV---HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA   78 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc---ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCH
Confidence            589999999999999999999998 8884   667799999999999999999999999999887     6778899999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCcccccc------------cccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHH
Q psy5490          99 LMEAAREGHEEMVCVLLQKGAKINAHTE------------ETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPL  163 (352)
Q Consensus        99 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L  163 (352)
                      ||+|+..|+.+++++|+++|++++....            ..|.||||+|+..|+.+++++|+++|++++.   .|+|||
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L  158 (232)
T 2rfa_A           79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL  158 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            9999999999999999999999987532            2699999999999999999999999999865   689999


Q ss_pred             HHHHHcCCHHHH----HHHHHcCCCc------cccccccHHHHHHHh
Q psy5490         164 MEAAQEGHLELV----RYLLDSGAQE------MQTKHIDILEFKKRK  200 (352)
Q Consensus       164 ~~A~~~~~~~~v----~~Ll~~ga~~------~~~~~~~~~~~~~~~  200 (352)
                      |+|+..|+.+++    ++|+++|++.      ...+..+.++.....
T Consensus       159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~  205 (232)
T 2rfa_A          159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAG  205 (232)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHH
Confidence            999999999988    9999999987      355566665555443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=1e-31  Score=218.95  Aligned_cols=148  Identities=32%  Similarity=0.379  Sum_probs=139.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHc
Q psy5490          26 FESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE  105 (352)
Q Consensus        26 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~  105 (352)
                      +.++|+.|+..|+.+++++|+++|.+++    .+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            4689999999999999999999999753    468899999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHH
Q psy5490         106 GHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYL  178 (352)
Q Consensus       106 g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~L  178 (352)
                      |+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++.   .|.|||++|+..|+.+++++|
T Consensus        78 ~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           78 GHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999999998 477899999999999999999999999999865   688999999999999999997

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.98  E-value=7.5e-32  Score=225.58  Aligned_cols=165  Identities=29%  Similarity=0.298  Sum_probs=149.2

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHH
Q psy5490          24 DSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAA  103 (352)
Q Consensus        24 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~  103 (352)
                      .++.++||.||..|+.+++++|++.+..  .++..+..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTEN--DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA   80 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            4578999999999999999999998432  15677899999999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHH
Q psy5490         104 REGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLD  180 (352)
Q Consensus       104 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~  180 (352)
                      ..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++.   .|.|||++|+..++.+++++|++
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A           81 SHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998 477899999999999999999999999999854   78999999999999999999999


Q ss_pred             cCCCccccccc
Q psy5490         181 SGAQEMQTKHI  191 (352)
Q Consensus       181 ~ga~~~~~~~~  191 (352)
                      +|++.......
T Consensus       160 ~g~~~~~~~~~  170 (179)
T 3f6q_A          160 MGQNLNRIPYK  170 (179)
T ss_dssp             TTCCCSCBCCC
T ss_pred             hhcCcccCCcc
Confidence            99998765433

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.98  E-value=4.2e-32  Score=223.87  Aligned_cols=158  Identities=25%  Similarity=0.322  Sum_probs=142.2

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHH
Q psy5490          22 PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLME  101 (352)
Q Consensus        22 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~  101 (352)
                      .|.+|.++||.|+..|+.+++++|++.+..  ..+..+..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   81 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSV--NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHN   81 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCC--CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHH
Confidence            366789999999999999999999985432  145567889999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHH
Q psy5490         102 AAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYL  178 (352)
Q Consensus       102 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~L  178 (352)
                      |+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++.   .|+|||++|+. |+.+++++|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred             HHHcCcHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHH
Confidence            9999999999999999999998 577899999999999999999999999998755   78999999877 899999999


Q ss_pred             HHcCC
Q psy5490         179 LDSGA  183 (352)
Q Consensus       179 l~~ga  183 (352)
                      +++|+
T Consensus       160 ~~~gA  164 (165)
T 3twr_A          160 RGDAA  164 (165)
T ss_dssp             HTC--
T ss_pred             hhccc
Confidence            99886

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=9.2e-33  Score=241.26  Aligned_cols=178  Identities=26%  Similarity=0.281  Sum_probs=152.8

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChH
Q psy5490          20 NMPTDSFESPLTLAACGGHVDLALLLIERGANI-EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTP   98 (352)
Q Consensus        20 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~   98 (352)
                      +.+|.+|+||||+|+..|+.+++++|++.+... ..++..+..|+||||+|+..|+.++|++|+++|++++.+|..|+||
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   81 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP   81 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            456889999999999999999999999887631 1257778999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCc------ccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC----CCCCHHHHHHH
Q psy5490          99 LMEAAREGHEEMVCVLLQKGAKI------NAHTEETQETALTLACCGGFLDVADFLLKNGANIEL----GASTPLMEAAQ  168 (352)
Q Consensus        99 L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~g~t~L~~A~~  168 (352)
                      ||+|+..|+.+++++|+++|++.      +. .+..|.||||+|+..|+.+++++|+++|++++.    .|+||||+|+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKA-TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGC-CCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Confidence            99999999999999999999763      33 466799999999999999999999999999864    68899999999


Q ss_pred             cCCHHHHHHHHHcCCCccccccccHHHHHH
Q psy5490         169 EGHLELVRYLLDSGAQEMQTKHIDILEFKK  198 (352)
Q Consensus       169 ~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~  198 (352)
                      .|+.++|++|+++|++....+..+.+++..
T Consensus       161 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~  190 (236)
T 1ikn_D          161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQL  190 (236)
T ss_dssp             TTCHHHHHHHHTTTCCSCCCCTTCCCGGGG
T ss_pred             cCCHHHHHHHHHcCCCCCcccCCCCCHHHH
Confidence            999999999999999998877666555443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.3e-31  Score=239.96  Aligned_cols=160  Identities=27%  Similarity=0.374  Sum_probs=150.6

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCCChHHHHHH-----HcCCHHHHHHHHHcCCCCCCcC
Q psy5490          19 VNMPTDSFESPLTLAACGGHVDLALLLIERGA-NIEEVNMPTDSFESPLTLAA-----CGGHVDLALLLIERGANIEEVN   92 (352)
Q Consensus        19 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~n~~~~~g~t~Lh~A~-----~~g~~~~v~~Ll~~g~~~~~~d   92 (352)
                      +|..|.+|+||||+|+..|+.+++++|++.|+ +   ++..+..|+||||+|+     ..++.+++++|++.|.+.+..+
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~---~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~  180 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK---VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKAS  180 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC---TTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCT
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc---CCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccC
Confidence            78889999999999999999999999999998 6   4667799999999999     6689999999999999999999


Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHH-cCCCCCC---CCCCHHHHHHH
Q psy5490          93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLK-NGANIEL---GASTPLMEAAQ  168 (352)
Q Consensus        93 ~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~---~g~t~L~~A~~  168 (352)
                      ..|+||||+|+..|+.++|++|+++|++++. .+..|+||||+|+..|+.+++++|++ .|++++.   .|+||||+|+.
T Consensus       181 ~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~-~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~  259 (276)
T 4hbd_A          181 QAGQTALMLAVSHGRVDVVKALLACEADVNV-QDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALD  259 (276)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH
Confidence            9999999999999999999999999999998 47789999999999999999999999 8998765   78999999999


Q ss_pred             cCCHHHHHHHHHcC
Q psy5490         169 EGHLELVRYLLDSG  182 (352)
Q Consensus       169 ~~~~~~v~~Ll~~g  182 (352)
                      .|+.+++++|++++
T Consensus       260 ~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          260 AGQSEIASMLYSRM  273 (276)
T ss_dssp             HTCHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHhcc
Confidence            99999999999875

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=9.9e-31  Score=222.37  Aligned_cols=175  Identities=22%  Similarity=0.311  Sum_probs=157.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHH
Q psy5490          23 TDSFESPLTLAACGGHVDLALLLIERGA-NIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLME  101 (352)
Q Consensus        23 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~  101 (352)
                      +..+.|+||.|+..|+.+++++|++.+. +   ++..+..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~   78 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQ---VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLY   78 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            4568999999999999999999999876 5   46677899999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHHH-hcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcC-CCCCC---CCCCHHHHHHHcCC-----
Q psy5490         102 AAREGHEEMVCVLL-QKGAKINAHTEETQETALTLACCGGFLDVADFLLKNG-ANIEL---GASTPLMEAAQEGH-----  171 (352)
Q Consensus       102 A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~---~g~t~L~~A~~~~~-----  171 (352)
                      |+..|+.+++++|+ ..+++++. .+..|.||||+|+..|+.+++++|+++| ++++.   .|+||||+|+..++     
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~  157 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLNK-HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY  157 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTC-CCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred             HHHcCCHHHHHHHHhccCccccc-ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhH
Confidence            99999999999999 55778887 5778999999999999999999999999 77654   68899999999988     


Q ss_pred             HHHHHHHHHcCCCccccccccHHHHHHHhh
Q psy5490         172 LELVRYLLDSGAQEMQTKHIDILEFKKRKQ  201 (352)
Q Consensus       172 ~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~  201 (352)
                      .+++++|+++|++....+..+.+++....+
T Consensus       158 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  187 (201)
T 3hra_A          158 QDIVKLLMENGADQSIKDNSGRTAMDYANQ  187 (201)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCccCCCCCCHHHHHHH
Confidence            999999999999999888777766655443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=7.1e-31  Score=214.35  Aligned_cols=150  Identities=27%  Similarity=0.342  Sum_probs=139.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHH
Q psy5490          26 FESPLTLAACGGHVDLALLLIER-GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAR  104 (352)
Q Consensus        26 g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~  104 (352)
                      +.|+||+|+..|+.+++++|++. +.+   ++..+..|+||||+ +..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   77 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVH---PDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCC---TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcC---ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            56899999999999999999998 225   46677899999999 99999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHc
Q psy5490         105 EGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDS  181 (352)
Q Consensus       105 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~  181 (352)
                      .|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++ ++++.   .|.|||++|+..|+.+++++|+++
T Consensus        78 ~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           78 TGFLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cCcHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999998 467899999999999999999999999 87754   688999999999999999999975

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=3.5e-31  Score=234.06  Aligned_cols=176  Identities=20%  Similarity=0.174  Sum_probs=151.7

Q ss_pred             CCChHHHHHHHcCCHH----HHHHHHHcCCCCCCcC-CCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCc-----
Q psy5490          25 SFESPLTLAACGGHVD----LALLLIERGANIEEVN-MPTDSFESPLTLAACG---GHVDLALLLIERGANIEEV-----   91 (352)
Q Consensus        25 ~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~n-~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~-----   91 (352)
                      .|+||||+||..|+.+    ++++|++.|++++... ..|..|+||||+|+..   |+.++|++|+++|++++..     
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            3789999999999997    6678888999854311 1578999999999999   9999999999999887643     


Q ss_pred             ------CCCCChHHHHHHHcCcHHHHHHHHhcCCCccccccc------------ccCcHHHHHHHcCCHHHHHHHHH---
Q psy5490          92 ------NDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEE------------TQETALTLACCGGFLDVADFLLK---  150 (352)
Q Consensus        92 ------d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~------------~g~t~L~~A~~~g~~~~v~~Ll~---  150 (352)
                            |..|+||||+|+..|+.+++++|+++|++++.....            .|.||||+|+..|+.+++++|++   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                  377999999999999999999999999999985433            29999999999999999999999   


Q ss_pred             cCCCCCC---CCCCHHHHHHH--cCCHH-------HHHHHHHcCCCc-------cccccccHHHHHHHh
Q psy5490         151 NGANIEL---GASTPLMEAAQ--EGHLE-------LVRYLLDSGAQE-------MQTKHIDILEFKKRK  200 (352)
Q Consensus       151 ~g~~~~~---~g~t~L~~A~~--~~~~~-------~v~~Ll~~ga~~-------~~~~~~~~~~~~~~~  200 (352)
                      +|++++.   .|+||||+|+.  .++.+       ++++|+++|++.       ...+..+.++.....
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~  229 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAA  229 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHH
Confidence            9999865   78999999999  88888       999999999998       677777666655543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.6e-30  Score=219.93  Aligned_cols=148  Identities=28%  Similarity=0.316  Sum_probs=138.0

Q ss_pred             CCCCCCccHHHHHHcCCC-------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHH
Q psy5490           1 MPTDSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLT   67 (352)
Q Consensus         1 ~~~~~g~t~L~lA~~~~~-------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh   67 (352)
                      ++|..|+|+||+|+..|+             ++..|..|+||||+|+..|+.+++++|+++|+++   +..+..|+||||
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~  106 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV---NTKDFSGKTPLM  106 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT---TCCCTTSCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCcHHH
Confidence            368899999999997665             5556889999999999999999999999999985   667789999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHH
Q psy5490          68 LAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF  147 (352)
Q Consensus        68 ~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~  147 (352)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~v~~  185 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA-RDLTGLTAEASARIFGRQEVIKI  185 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998 47789999999999999999999


Q ss_pred             HHHcC
Q psy5490         148 LLKNG  152 (352)
Q Consensus       148 Ll~~g  152 (352)
                      |+++|
T Consensus       186 Ll~~~  190 (192)
T 2rfm_A          186 FTEVR  190 (192)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            99875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=7.3e-31  Score=234.31  Aligned_cols=183  Identities=19%  Similarity=0.196  Sum_probs=149.7

Q ss_pred             CCCCCCCCCCChHHHHHHHcCCHHHHHHHHH----cCCCCCCcC-CCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCC
Q psy5490          17 GHVNMPTDSFESPLTLAACGGHVDLALLLIE----RGANIEEVN-MPTDSFESPLTLAACG---GHVDLALLLIERGANI   88 (352)
Q Consensus        17 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~n-~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~   88 (352)
                      ...+..|..|+|+||+||..|++++|++|++    .+.+++..+ ..+..|+||||+|+..   |+.++|++|+++|+++
T Consensus         4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            4456678999999999999999999998887    455543222 3478999999999987   9999999999998653


Q ss_pred             -------C----CcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccc-------------cccCcHHHHHHHcCCHHH
Q psy5490          89 -------E----EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTE-------------ETQETALTLACCGGFLDV  144 (352)
Q Consensus        89 -------~----~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-------------~~g~t~L~~A~~~g~~~~  144 (352)
                             +    ..|..|+||||+|+..|+.++|++|+++|++++....             ..|.||||+|+..|+.++
T Consensus        84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  163 (273)
T 2pnn_A           84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI  163 (273)
T ss_dssp             TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred             cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence                   2    2567899999999999999999999999999998543             169999999999999999


Q ss_pred             HHHHHH---cCCCCCC---CCCCHHHHHHHcCC---------HHHHHHHHHcCCCcc-------ccccccHHHHHHH
Q psy5490         145 ADFLLK---NGANIEL---GASTPLMEAAQEGH---------LELVRYLLDSGAQEM-------QTKHIDILEFKKR  199 (352)
Q Consensus       145 v~~Ll~---~g~~~~~---~g~t~L~~A~~~~~---------~~~v~~Ll~~ga~~~-------~~~~~~~~~~~~~  199 (352)
                      +++|++   +|++++.   .|+||||+|+..|+         .+++++|+++|++.+       ..+..+.++....
T Consensus       164 v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A  240 (273)
T 2pnn_A          164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA  240 (273)
T ss_dssp             HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence            999999   8998865   78999999999998         899999999999875       3555565555544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=6.4e-30  Score=212.23  Aligned_cols=148  Identities=29%  Similarity=0.387  Sum_probs=135.4

Q ss_pred             CccHHHHHHcCCC--------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHH
Q psy5490           6 FESPLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC   71 (352)
Q Consensus         6 g~t~L~lA~~~~~--------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~   71 (352)
                      +.++||.|+..|+              ++..|..|+||||+|+..|+.+++++|+++|+++   +..+..|+||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP---HILAKERESALSLAST   78 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT---TCCCTTCCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc---hhhcccCCCHHHHHHH
Confidence            5689999997766              4556889999999999999999999999999995   5667899999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHc
Q psy5490          72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN  151 (352)
Q Consensus        72 ~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  151 (352)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT-EADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998 577899999999999999999999999


Q ss_pred             CCCCCC
Q psy5490         152 GANIEL  157 (352)
Q Consensus       152 g~~~~~  157 (352)
                      |+++..
T Consensus       158 ~~~~~~  163 (172)
T 3v30_A          158 ILKLFQ  163 (172)
T ss_dssp             HHHHSC
T ss_pred             HHHHhc
Confidence            886543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.6e-30  Score=238.55  Aligned_cols=172  Identities=18%  Similarity=0.131  Sum_probs=143.7

Q ss_pred             cCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCC---HHHHHHHHHcC-CCCC
Q psy5490          15 CGGHVNM-PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGH---VDLALLLIERG-ANIE   89 (352)
Q Consensus        15 ~~~~~n~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~---~~~v~~Ll~~g-~~~~   89 (352)
                      .+.++|. .|..|+||||+|+..|+.++|++||++|+++   +.+|..|+||||+|+..|+   .++++.|++++ .+++
T Consensus       119 ~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~---n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~  195 (327)
T 1sw6_A          119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR---LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI  195 (327)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG
T ss_pred             cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc
Confidence            3578999 8999999999999999999999999999995   5677999999999999998   78888888876 7899


Q ss_pred             CcCCCCChHHHHHHH----cCcHHHHHHHHhc--------------------CCCcccccccccCcHHHHHHHcCCHHHH
Q psy5490          90 EVNDEGYTPLMEAAR----EGHEEMVCVLLQK--------------------GAKINAHTEETQETALTLACCGGFLDVA  145 (352)
Q Consensus        90 ~~d~~G~t~L~~A~~----~g~~~~v~~Ll~~--------------------g~~~~~~~~~~g~t~L~~A~~~g~~~~v  145 (352)
                      .+|..|+||||+|+.    .|+.+++++|++.                    |++++. .+..|.||||+|+.      +
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~-~~~~g~t~L~~a~~------~  268 (327)
T 1sw6_A          196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND-KNGERKDSILENLD------L  268 (327)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------H
T ss_pred             CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccc-ccccCCChhHHHHH------H
Confidence            999999999999999    8999999999987                    888888 47789999999985      8


Q ss_pred             HHHHHcCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHH
Q psy5490         146 DFLLKNGANI-ELGASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEF  196 (352)
Q Consensus       146 ~~Ll~~g~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~  196 (352)
                      ++|++++.+. |..|+||||+|+..|+.++|++|+++|++....+..+.+++
T Consensus       269 ~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL  320 (327)
T 1sw6_A          269 KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV  320 (327)
T ss_dssp             HHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGG
T ss_pred             HHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH
Confidence            9999996553 55799999999999999999999999999988887766554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=7.2e-31  Score=230.07  Aligned_cols=161  Identities=22%  Similarity=0.207  Sum_probs=118.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHH
Q psy5490          23 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEA  102 (352)
Q Consensus        23 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A  102 (352)
                      +..|.||||.|+..|+.++++.|+++|++++   . +..|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~---~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK---F-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNA   77 (239)
T ss_dssp             ---------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcc---c-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            3468999999999999999999999999964   2 26789999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCC-CHHHHH--HHcCCHHHHH
Q psy5490         103 AREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GAS-TPLMEA--AQEGHLELVR  176 (352)
Q Consensus       103 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~-t~L~~A--~~~~~~~~v~  176 (352)
                      +..|+.+++++|+++|++++. .+..|+||||+|+..|+.+++++|+++|++++.   .|. ||||+|  +..|+.++++
T Consensus        78 ~~~g~~~~v~~Ll~~ga~~~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHH
Confidence            999999999999999999998 477899999999999999999999999999865   344 999999  7889999999


Q ss_pred             HHHHcCCCcccc
Q psy5490         177 YLLDSGAQEMQT  188 (352)
Q Consensus       177 ~Ll~~ga~~~~~  188 (352)
                      +|+++|++....
T Consensus       157 ~Ll~~~a~~~~~  168 (239)
T 1ycs_B          157 FLYGVQEKMGIM  168 (239)
T ss_dssp             HHHHHHHHTTTT
T ss_pred             HHHHhhhccccc
Confidence            999999876654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=1.7e-29  Score=207.36  Aligned_cols=146  Identities=28%  Similarity=0.312  Sum_probs=132.2

Q ss_pred             CCCccHHHHHHcC-------------CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHH
Q psy5490           4 DSFESPLTLAACG-------------GHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA   70 (352)
Q Consensus         4 ~~g~t~L~lA~~~-------------~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~   70 (352)
                      +...|+||.|+..             .++|..|..|+||||+|+. |+.+++++|+++|+++   +.++..|+||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP---DLKDRTGFAVIHDAA   78 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC---CCCCCCCCCHHHHHH
Confidence            4567899999964             4567778999999999999 9999999999999995   667789999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCc-ccccccccCcHHHHHHHcCCHHHHHHHH
Q psy5490          71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI-NAHTEETQETALTLACCGGFLDVADFLL  149 (352)
Q Consensus        71 ~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  149 (352)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++. +. .+..|.||||+|+..|+.+++++|+
T Consensus        79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll  157 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH-RNHKGDTACDLARLYGRNEVVSLMQ  157 (162)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999984 65 5778999999999999999999999


Q ss_pred             HcCCC
Q psy5490         150 KNGAN  154 (352)
Q Consensus       150 ~~g~~  154 (352)
                      ++|++
T Consensus       158 ~~GAd  162 (162)
T 1ihb_A          158 ANGAG  162 (162)
T ss_dssp             HTC--
T ss_pred             HhCCC
Confidence            99985

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=5.3e-30  Score=231.31  Aligned_cols=174  Identities=25%  Similarity=0.319  Sum_probs=156.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHH
Q psy5490          23 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEA  102 (352)
Q Consensus        23 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A  102 (352)
                      +..|.|+||+||..|++++|++|+++|+++   +..+..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A  113 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADI---NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAA  113 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            557789999999999999999999999995   56678999999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHH-cCCCC--------------------------
Q psy5490         103 AREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLK-NGANI--------------------------  155 (352)
Q Consensus       103 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~--------------------------  155 (352)
                      +..|+.+++++|+++|++++. .+..|.||||+|+..++.+++++|+. .+.++                          
T Consensus       114 ~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (299)
T 1s70_B          114 ASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (299)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHcCCHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence            999999999999999999998 57789999999999999999988775 33332                          


Q ss_pred             ---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHHh
Q psy5490         156 ---ELGASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRK  200 (352)
Q Consensus       156 ---~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  200 (352)
                         +..|.||||+|+..|+.++|++|+++|++.+..+..+.++.....
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~  240 (299)
T 1s70_B          193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA  240 (299)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH
T ss_pred             hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence               236899999999999999999999999999988877776665543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=5.7e-30  Score=204.46  Aligned_cols=133  Identities=26%  Similarity=0.340  Sum_probs=114.9

Q ss_pred             CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-C
Q psy5490          17 GHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDE-G   95 (352)
Q Consensus        17 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~-G   95 (352)
                      .++|..|..|.||||+|+..|+.+++++|+++|+++   +..+..|+||||+|+. |+.+++++|+++|++++.+|.. |
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g   78 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP---NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATL   78 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTT
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc---CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCC
Confidence            577888888999999999999999999999998884   5566888999999999 9999999999999999988888 8


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490          96 YTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN  154 (352)
Q Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  154 (352)
                      +||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|+|
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGARLDV-CDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCCCCC-CSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999998887 466788888888888888888888888764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=2.5e-30  Score=213.21  Aligned_cols=148  Identities=30%  Similarity=0.364  Sum_probs=132.7

Q ss_pred             CCCCCCccHHHHHHcCCCC--------------CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHH
Q psy5490           1 MPTDSFESPLTLAACGGHV--------------NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPL   66 (352)
Q Consensus         1 ~~~~~g~t~L~lA~~~~~~--------------n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~L   66 (352)
                      |.|..|.|+||.|+..|++              +..+..|+||||+|+..|+.+++++|+++|+++   +..+..|+|||
T Consensus         3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L   79 (165)
T 3twr_A            3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV---HAKDKGGLVPL   79 (165)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHH
T ss_pred             CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC---CccCCCCCCHH
Confidence            4678899999999987664              334677899999999999999999999999995   66778999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHH
Q psy5490          67 TLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVAD  146 (352)
Q Consensus        67 h~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~  146 (352)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+. |+.++++
T Consensus        80 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~a~~-~~~~i~~  157 (165)
T 3twr_A           80 HNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK-KNRDGNTPLDLVKD-GDTDIQD  157 (165)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCTGGGSCT-TCHHHHH
T ss_pred             HHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCChhHhHhc-CChHHHH
Confidence            999999999999999999999999999999999999999999999999999999998 57789999999877 9999999


Q ss_pred             HHHHcCC
Q psy5490         147 FLLKNGA  153 (352)
Q Consensus       147 ~Ll~~g~  153 (352)
                      +|+++|+
T Consensus       158 ~L~~~gA  164 (165)
T 3twr_A          158 LLRGDAA  164 (165)
T ss_dssp             HHHTC--
T ss_pred             HHhhccc
Confidence            9999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=2.8e-29  Score=207.28  Aligned_cols=146  Identities=25%  Similarity=0.361  Sum_probs=136.0

Q ss_pred             CCccHHHHHHcCCC-------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHH
Q psy5490           5 SFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC   71 (352)
Q Consensus         5 ~g~t~L~lA~~~~~-------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~   71 (352)
                      .|.|+||.|+..|+             +|..|..|+||||+|+..|+.+++++|+++|+++   +..+..|+||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP---QLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC---CCcCCCCCcHHHHHHH
Confidence            58899999997655             5667899999999999999999999999999995   5567899999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHc
Q psy5490          72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN  151 (352)
Q Consensus        72 ~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  151 (352)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI-ETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998 577899999999999999999999998


Q ss_pred             CCC
Q psy5490         152 GAN  154 (352)
Q Consensus       152 g~~  154 (352)
                      +.+
T Consensus       158 ~~~  160 (167)
T 3v31_A          158 LLK  160 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=4.6e-29  Score=206.64  Aligned_cols=146  Identities=36%  Similarity=0.473  Sum_probs=133.3

Q ss_pred             CCCCccHHHHHHcC-------------CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHH
Q psy5490           3 TDSFESPLTLAACG-------------GHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLA   69 (352)
Q Consensus         3 ~~~g~t~L~lA~~~-------------~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A   69 (352)
                      ...+.++|+.|+..             .++|..|..|.||||+|+..|+.+++++|+++|+++   +..+..|+||||+|
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV---NAVDHAGMTPLRLA   87 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHH
Confidence            44567889999954             456777899999999999999999999999999985   56678999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHH
Q psy5490          70 ACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLL  149 (352)
Q Consensus        70 ~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  149 (352)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA-QDKFGKTAFDISIDNGNEDLAEILQ  166 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998 5778999999999999999999999


Q ss_pred             HcC
Q psy5490         150 KNG  152 (352)
Q Consensus       150 ~~g  152 (352)
                      ++|
T Consensus       167 ~~G  169 (169)
T 2y1l_E          167 KLN  169 (169)
T ss_dssp             TC-
T ss_pred             HcC
Confidence            876

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=6.9e-30  Score=226.17  Aligned_cols=178  Identities=18%  Similarity=0.171  Sum_probs=149.9

Q ss_pred             CCCCChHHHHHHHcCCHHHH----HHHHHcCCCCCCcC-CCCCCCChHHHHHH---HcCCHHHHHHHHHcCCC-------
Q psy5490          23 TDSFESPLTLAACGGHVDLA----LLLIERGANIEEVN-MPTDSFESPLTLAA---CGGHVDLALLLIERGAN-------   87 (352)
Q Consensus        23 d~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~n-~~~~~g~t~Lh~A~---~~g~~~~v~~Ll~~g~~-------   87 (352)
                      +..++++||.||+.|+.++|    ++|++.|++++..+ ..+..|+||||+|+   ..|+.++|++|++.|++       
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            45789999999999999955    45555999875543 23577999999999   77999999999998744       


Q ss_pred             ----CCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccc-------------cccCcHHHHHHHcCCHHHHHHHHH
Q psy5490          88 ----IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTE-------------ETQETALTLACCGGFLDVADFLLK  150 (352)
Q Consensus        88 ----~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-------------~~g~t~L~~A~~~g~~~~v~~Ll~  150 (352)
                          ++..|..|+||||+|+..|+.++|++|+++|++++....             ..|.||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  161 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE  161 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                455566899999999999999999999999999998542             579999999999999999999999


Q ss_pred             ---cCCCCCC---CCCCHHHHHHHcCC---------HHHHHHHHHcCCCc-------cccccccHHHHHHHh
Q psy5490         151 ---NGANIEL---GASTPLMEAAQEGH---------LELVRYLLDSGAQE-------MQTKHIDILEFKKRK  200 (352)
Q Consensus       151 ---~g~~~~~---~g~t~L~~A~~~~~---------~~~v~~Ll~~ga~~-------~~~~~~~~~~~~~~~  200 (352)
                         +|++++.   .|+||||+|+..++         .+++++|+++|++.       ...+..+.+++....
T Consensus       162 ~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~  233 (260)
T 3jxi_A          162 NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA  233 (260)
T ss_dssp             CSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             ccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHH
Confidence               8998865   68999999999888         79999999999987       456666666555443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=2.9e-31  Score=231.16  Aligned_cols=166  Identities=24%  Similarity=0.266  Sum_probs=138.0

Q ss_pred             HHcCCCCCCC---CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy5490          13 AACGGHVNMP---TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIE   89 (352)
Q Consensus        13 A~~~~~~n~~---d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~   89 (352)
                      ...+++++..   +.++.|+||+|+..|+.+++++|++.|+++   +..|..|+||||+|+..|+.++|++|+++|++++
T Consensus         5 l~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n   81 (229)
T 2vge_A            5 LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP---SQPNEEGITALHNAICGANYSIVDFLITAGANVN   81 (229)
T ss_dssp             -----CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             hccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            3456666654   456778999999999999999999999985   6677999999999999999999999999999999


Q ss_pred             CcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHH--HHcCCHHHHHHHHHcCCCCCC---CCCCHHH
Q psy5490          90 EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLA--CCGGFLDVADFLLKNGANIEL---GASTPLM  164 (352)
Q Consensus        90 ~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~  164 (352)
                      .+|..|+||||+|+..|+.+++++|+++|++++...+..|+||||+|  +..|+.+++++|+++|++++.   .|.++++
T Consensus        82 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~  161 (229)
T 2vge_A           82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW  161 (229)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESS
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHH
Confidence            99999999999999999999999999999999986566899999999  999999999999999887754   3445655


Q ss_pred             HHHHcCCHHHHHHHHHcCCC
Q psy5490         165 EAAQEGHLELVRYLLDSGAQ  184 (352)
Q Consensus       165 ~A~~~~~~~~v~~Ll~~ga~  184 (352)
                      .++..+   .+++|++.|++
T Consensus       162 ~~~~~~---~~~~ll~~ga~  178 (229)
T 2vge_A          162 DYSAEF---GDELSFREGES  178 (229)
T ss_dssp             CBCCSS---TTBCCBCTTCE
T ss_pred             HHhhcc---ccccCcccccc
Confidence            433322   23556666665

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=2e-30  Score=227.30  Aligned_cols=174  Identities=20%  Similarity=0.252  Sum_probs=132.6

Q ss_pred             CCCCCccHHHHHHcCCCCCCC------------CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHH
Q psy5490           2 PTDSFESPLTLAACGGHVNMP------------TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLA   69 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~~n~~------------d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A   69 (352)
                      |+..|.|+||.|+..++.+.+            +..|.||||+|+..|+.+++++|++.|+++   +..|..|+||||+|
T Consensus         1 p~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            1 PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDP---SLPNDEGITALHNA   77 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC---CCCCTTSCCHHHHH
T ss_pred             CCccccccCchhhhhhhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHH
Confidence            467899999999988776554            456789999999999999999999999984   66779999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHH--HHcCCHHHHHH
Q psy5490          70 ACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLA--CCGGFLDVADF  147 (352)
Q Consensus        70 ~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~  147 (352)
                      +..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++......+.||||+|  +..|+.+++++
T Consensus        78 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999986555555999999  78899999999


Q ss_pred             HHHcCCCCCC------------CCCCHHHHHHHcCCHHHHHHHHH
Q psy5490         148 LLKNGANIEL------------GASTPLMEAAQEGHLELVRYLLD  180 (352)
Q Consensus       148 Ll~~g~~~~~------------~g~t~L~~A~~~~~~~~v~~Ll~  180 (352)
                      |+++|++++.            .+.+++++++..|.  ++++|.+
T Consensus       158 Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~  200 (239)
T 1ycs_B          158 LYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHR  200 (239)
T ss_dssp             HHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCC
T ss_pred             HHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEe
Confidence            9999987643            46677777776665  3444433

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=4.7e-29  Score=208.49  Aligned_cols=150  Identities=28%  Similarity=0.314  Sum_probs=136.7

Q ss_pred             CCCccHHHHHHcCC--------------CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHH
Q psy5490           4 DSFESPLTLAACGG--------------HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLA   69 (352)
Q Consensus         4 ~~g~t~L~lA~~~~--------------~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A   69 (352)
                      ..+.++||.||..|              +++..|..|+||||+|+..|+.+++++|+++|+++   +..+..|+||||+|
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A   79 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI---NVMNRGDDTPLHLA   79 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC---CCcCCCCCCHHHHH
Confidence            35778899998654              46677899999999999999999999999999995   66678999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHH
Q psy5490          70 ACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLL  149 (352)
Q Consensus        70 ~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  149 (352)
                      +..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..++.+++++|+
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI-CNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB-CCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch-hccCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998 5778999999999999999999999


Q ss_pred             HcCCCCCC
Q psy5490         150 KNGANIEL  157 (352)
Q Consensus       150 ~~g~~~~~  157 (352)
                      ++|++++.
T Consensus       159 ~~g~~~~~  166 (179)
T 3f6q_A          159 KMGQNLNR  166 (179)
T ss_dssp             HTTCCCSC
T ss_pred             HhhcCccc
Confidence            99999875

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=6.1e-29  Score=202.42  Aligned_cols=139  Identities=28%  Similarity=0.363  Sum_probs=128.1

Q ss_pred             CccHHHHHHcCCCCCC------------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcC
Q psy5490           6 FESPLTLAACGGHVNM------------PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGG   73 (352)
Q Consensus         6 g~t~L~lA~~~~~~n~------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g   73 (352)
                      +.++|+.|+..|++++            .+..|.||||+|+..|+.+++++|+++|+++   +..+..|+||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR---DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---TCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcC
Confidence            4678999997666433            3778999999999999999999999999995   666789999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHH
Q psy5490          74 HVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL  148 (352)
Q Consensus        74 ~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  148 (352)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|
T Consensus        79 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998 577899999999999999999987

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=7.6e-29  Score=197.88  Aligned_cols=128  Identities=27%  Similarity=0.402  Sum_probs=121.2

Q ss_pred             cCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccc-cCcHH
Q psy5490          55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEET-QETAL  133 (352)
Q Consensus        55 ~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-g~t~L  133 (352)
                      ++..+..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++.. +.. |.|||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-~~~~g~t~L   82 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA-DPATLTRPV   82 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCC-BTTTTBCHH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCc-CCCCCCCHH
Confidence            46677999999999999999999999999999999999999999999999 9999999999999999984 666 89999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490         134 TLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQ  184 (352)
Q Consensus       134 ~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~  184 (352)
                      |+|+..|+.+++++|+++|++++.   .|+||||+|+..++.+++++|+++|++
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999865   688999999999999999999999985

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=1.4e-29  Score=213.37  Aligned_cols=152  Identities=18%  Similarity=0.159  Sum_probs=135.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC-CCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCcCCCCChHHH
Q psy5490          26 FESPLTLAACGGHVDLALLLIERGANIEEVNMPT-DSFESPLTLAACGGHV----DLALLLIERGANIEEVNDEGYTPLM  100 (352)
Q Consensus        26 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~-~~g~t~Lh~A~~~g~~----~~v~~Ll~~g~~~~~~d~~G~t~L~  100 (352)
                      +.++|+.|++.|+++.++.|++.+.+     ..+ ..|+||||+|+..|+.    +++++|+++|++++.+|.+|+||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~-----~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE-----DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS-----CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc-----cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            46789999999999999999998764     233 6799999999999975    5999999999999999999999999


Q ss_pred             HHHHcCc------HHHHHHHHhcCCCcccccccccC-cHHHHHHHcC-----CHHHHHHHHH-cCCCCCC---CCCCHHH
Q psy5490         101 EAAREGH------EEMVCVLLQKGAKINAHTEETQE-TALTLACCGG-----FLDVADFLLK-NGANIEL---GASTPLM  164 (352)
Q Consensus       101 ~A~~~g~------~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g-----~~~~v~~Ll~-~g~~~~~---~g~t~L~  164 (352)
                      +|+..++      .+++++|+++|++++.+ +..|. ||||+|+..+     +.+++++|++ +|++++.   .|+||||
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~  159 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE  159 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHH
Confidence            9999886      68999999999999994 67788 9999999954     4579999999 9999865   7899999


Q ss_pred             HHHHcCCHHHHHHHHHcCC
Q psy5490         165 EAAQEGHLELVRYLLDSGA  183 (352)
Q Consensus       165 ~A~~~~~~~~v~~Ll~~ga  183 (352)
                      +|++.|+.++|++|+++..
T Consensus       160 ~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          160 FVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             HHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH
Confidence            9999999999999997653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=4.2e-28  Score=217.10  Aligned_cols=148  Identities=25%  Similarity=0.337  Sum_probs=137.0

Q ss_pred             CCCCCCccHHHHHHcCC--------------CCCCCCCCCChHHHHHH-----HcCCHHHHHHHHHcCCCCCCcCCCCCC
Q psy5490           1 MPTDSFESPLTLAACGG--------------HVNMPTDSFESPLTLAA-----CGGHVDLALLLIERGANIEEVNMPTDS   61 (352)
Q Consensus         1 ~~~~~g~t~L~lA~~~~--------------~~n~~d~~g~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~n~~~~~   61 (352)
                      ++|.+|+|+||+|+..|              +++..|..|.||||+|+     ..++.+++++|++.|.+.   +..+..
T Consensus       106 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~---~~~~~~  182 (276)
T 4hbd_A          106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN---AKASQA  182 (276)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT---CCCTTT
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc---cccCCC
Confidence            46899999999999654              66777999999999999     679999999999999874   556788


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHh-cCCCcccccccccCcHHHHHHHcC
Q psy5490          62 FESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQ-KGAKINAHTEETQETALTLACCGG  140 (352)
Q Consensus        62 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~g  140 (352)
                      |+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++ .|++++. .+..|.||||+|+..|
T Consensus       183 g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~-~d~~g~TpL~~A~~~g  261 (276)
T 4hbd_A          183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISL-TDRDGSTALMVALDAG  261 (276)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTC-CCTTSCCHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcC-cCCCCCCHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999999999 8999998 5778999999999999


Q ss_pred             CHHHHHHHHHcC
Q psy5490         141 FLDVADFLLKNG  152 (352)
Q Consensus       141 ~~~~v~~Ll~~g  152 (352)
                      +.+++++|++++
T Consensus       262 ~~~iv~~Ll~~~  273 (276)
T 4hbd_A          262 QSEIASMLYSRM  273 (276)
T ss_dssp             CHHHHHHHHHHC
T ss_pred             CHHHHHHHHhcc
Confidence            999999999975

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=6.1e-28  Score=196.85  Aligned_cols=140  Identities=29%  Similarity=0.357  Sum_probs=129.4

Q ss_pred             CccHHHHHHcCC--------------CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHH
Q psy5490           6 FESPLTLAACGG--------------HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC   71 (352)
Q Consensus         6 g~t~L~lA~~~~--------------~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~   71 (352)
                      +.|+||.|+..|              +++..|..|+||||+ +..|+.+++++|+++|+++   +..|..|+||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~   77 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP---NVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHH
Confidence            467888888543              567779999999999 9999999999999999995   6677899999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHc
Q psy5490          72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN  151 (352)
Q Consensus        72 ~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  151 (352)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++. .+..|.||||+|+..|+.+++++|+++
T Consensus        78 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~-~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           78 TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR-RDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC-CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999 99988 577899999999999999999999975

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=8.8e-29  Score=202.28  Aligned_cols=140  Identities=26%  Similarity=0.308  Sum_probs=110.4

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCh-H
Q psy5490          20 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYT-P   98 (352)
Q Consensus        20 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t-~   98 (352)
                      +..+..|.||||+|+..|+.++|++|+++|+++   +..+..|+||||+|+ .|+.++|++|+++|++++.+|..|+| |
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp   81 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANP---NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP   81 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT---TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence            344678899999999999999999999999884   556788999999985 89999999999999999999999998 9


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHH
Q psy5490          99 LMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLM  164 (352)
Q Consensus        99 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~  164 (352)
                      ||+|+..|+.+++++|+++|++++. .+..|+||||+|+..|+.+++++|+++|++++.   .|.|+.+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGARLDV-RDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            9999999999999999999999987 466788999999999999999999999988755   4556655

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=1.8e-27  Score=186.43  Aligned_cols=126  Identities=42%  Similarity=0.660  Sum_probs=104.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHH
Q psy5490          25 SFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAR  104 (352)
Q Consensus        25 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~  104 (352)
                      +|+||||+|+..|+.+++++|+++|+++   +..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC---CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence            4788888888888888888888888874   5556788888888888888888888888888888888888888888888


Q ss_pred             cCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490         105 EGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN  154 (352)
Q Consensus       105 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  154 (352)
                      .|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cChHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            8888888888888888887 466678888888888888888888887764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=7.8e-28  Score=192.00  Aligned_cols=126  Identities=33%  Similarity=0.483  Sum_probs=98.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHH
Q psy5490          23 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEA  102 (352)
Q Consensus        23 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A  102 (352)
                      ...+.||||+|+..|+.+++++|+++|+++   +..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADV---NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            345678888888888888888888888774   55567788888888888888888888888888888888888888888


Q ss_pred             HHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcC
Q psy5490         103 AREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNG  152 (352)
Q Consensus       103 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  152 (352)
                      +..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~~~-~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADVNA-QDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHcCCCCcC-cCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            888888888888888888876 4566777777777777777777777765

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=2e-28  Score=213.17  Aligned_cols=148  Identities=19%  Similarity=0.174  Sum_probs=129.9

Q ss_pred             HHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCc
Q psy5490          42 ALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI  121 (352)
Q Consensus        42 v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~  121 (352)
                      |+.||++|++++..+..+..+.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            57889999998887878888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC----CCCCHHHHH--HHcCCHHHHHHHHHcCCCcccccc
Q psy5490         122 NAHTEETQETALTLACCGGFLDVADFLLKNGANIEL----GASTPLMEA--AQEGHLELVRYLLDSGAQEMQTKH  190 (352)
Q Consensus       122 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~g~t~L~~A--~~~~~~~~v~~Ll~~ga~~~~~~~  190 (352)
                      +. .+..|+||||+|+..|+.+++++|+++|++++.    .|+||||+|  +..|+.+++++|+++|++....+.
T Consensus        81 n~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~  154 (229)
T 2vge_A           81 NS-PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNS  154 (229)
T ss_dssp             TC-CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGG
T ss_pred             CC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccC
Confidence            98 467899999999999999999999999999854    688999999  999999999999999988776543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=1.3e-28  Score=225.79  Aligned_cols=157  Identities=17%  Similarity=0.135  Sum_probs=127.4

Q ss_pred             CCCCCccHHHHHHc-------------CCCCCCCCCCCChHHHHHHHcCC---HHHHHHHHHcC-CCCCCcCCCCCCCCh
Q psy5490           2 PTDSFESPLTLAAC-------------GGHVNMPTDSFESPLTLAACGGH---VDLALLLIERG-ANIEEVNMPTDSFES   64 (352)
Q Consensus         2 ~~~~g~t~L~lA~~-------------~~~~n~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~g-~~~~~~n~~~~~g~t   64 (352)
                      +|.+|+||||+||.             |.++|..|.+|+||||+|+..|+   .++++.|++.+ .+   ++..|..|+|
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~---~~~~d~~g~t  203 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC---LILEDSMNRT  203 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG---GGEECTTCCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc---ccCCCCCCCC
Confidence            58899999999996             45677789999999999999998   78888888887 44   5677899999


Q ss_pred             HHHHHHH----cCCHHHHHHHHHc--------------------CCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCC
Q psy5490          65 PLTLAAC----GGHVDLALLLIER--------------------GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAK  120 (352)
Q Consensus        65 ~Lh~A~~----~g~~~~v~~Ll~~--------------------g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~  120 (352)
                      |||+|+.    .|+.+++++|++.                    |++++.++..|+||||+|+.      +++|+++  +
T Consensus       204 pLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~  275 (327)
T 1sw6_A          204 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--M  275 (327)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--T
T ss_pred             HHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--C
Confidence            9999999    8999999999987                    89999999999999999986      8999998  4


Q ss_pred             cccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcC
Q psy5490         121 INAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEG  170 (352)
Q Consensus       121 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~  170 (352)
                      ++. .+..|+||||+|+..|+.+++++|+++|++++.   .|+||||+|++.|
T Consensus       276 ~n~-~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          276 LNA-QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TTC-CCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            666 467899999999999999999999999999865   7899999998764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=8.1e-27  Score=182.62  Aligned_cols=123  Identities=44%  Similarity=0.697  Sum_probs=117.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcC
Q psy5490          61 SFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGG  140 (352)
Q Consensus        61 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  140 (352)
                      +|+|+||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcc-cCCCCCcHHHHHHHcC
Confidence            489999999999999999999999999999999999999999999999999999999999998 4678999999999999


Q ss_pred             CHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490         141 FLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQ  184 (352)
Q Consensus       141 ~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~  184 (352)
                      +.+++++|+++|++++.   .|.|||++|+..|+.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999999998754   688999999999999999999999985

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=5.7e-27  Score=186.98  Aligned_cols=123  Identities=33%  Similarity=0.444  Sum_probs=115.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHH
Q psy5490          59 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACC  138 (352)
Q Consensus        59 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~  138 (352)
                      ...+.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+.
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~   89 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA-VDAIGFTPLHLAAF   89 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999998 46789999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcC
Q psy5490         139 GGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSG  182 (352)
Q Consensus       139 ~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g  182 (352)
                      .|+.+++++|+++|++++.   .|+||||+|+..|+.+++++|+++|
T Consensus        90 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999754   6899999999999999999999986

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=9e-28  Score=196.24  Aligned_cols=137  Identities=27%  Similarity=0.340  Sum_probs=115.5

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCc-HHHH
Q psy5490          57 MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQET-ALTL  135 (352)
Q Consensus        57 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~  135 (352)
                      ..+..|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+ .|+.+++++|+++|++++. .+..|.| |||+
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~-~d~~g~ttpL~~   84 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC-ADPATLTRPVHD   84 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC-CCTTTCCCHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHH
Confidence            34578999999999999999999999999999999999999999985 8999999999999999998 4677888 9999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHH
Q psy5490         136 ACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILE  195 (352)
Q Consensus       136 A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~  195 (352)
                      |+..|+.+++++|+++|++++.   .|+||||+|+..|+.+++++|+++|++....+..+...
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  147 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA  147 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence            9999999999999999999865   68899999999999999999999999988777666554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=3e-28  Score=214.15  Aligned_cols=160  Identities=23%  Similarity=0.185  Sum_probs=138.6

Q ss_pred             CccHHHHHHcCCCCCC----------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCH
Q psy5490           6 FESPLTLAACGGHVNM----------PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV   75 (352)
Q Consensus         6 g~t~L~lA~~~~~~n~----------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~   75 (352)
                      +.+++.+++..|+...          ++.+|.||||+|+..|+.+++++|++ |+++   +.+|..|+||||+|+..|+.
T Consensus        15 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~---~~~d~~g~t~L~~A~~~g~~   90 (244)
T 3ui2_A           15 GAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDV---DAVDENGRTALLFVAGLGSD   90 (244)
T ss_dssp             TEEEEEEEESSCCCCEEEEGGGSCHHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT---TCBCTTSCBHHHHHHHHTCH
T ss_pred             CccHHHHHHHcCCCcccccccccccccccCCCCHHHHHHHcCCHHHHHHHHc-CCCC---CCcCCCCCCHHHHHHHCCCH
Confidence            4445555566666554          24578999999999999999999999 8884   66778999999999999999


Q ss_pred             HHHHHHHHcCCCCCCcC-CCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490          76 DLALLLIERGANIEEVN-DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN  154 (352)
Q Consensus        76 ~~v~~Ll~~g~~~~~~d-~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  154 (352)
                      ++|++|+++|++++.++ ..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..++         .   
T Consensus        91 ~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t~l~~A~~~~~---------~---  157 (244)
T 3ui2_A           91 KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELAREILK---------T---  157 (244)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHHT---------T---
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHHHh---------c---
Confidence            99999999999999998 7899999999999999999999999999998 57789999999986322         1   


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490         155 IELGASTPLMEAAQEGHLELVRYLLDSGAQ  184 (352)
Q Consensus       155 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  184 (352)
                        ..+.++|++|+..|+.+++++|++++.+
T Consensus       158 --~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          158 --TPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             --CCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             --cCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence              2378999999999999999999997654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=1.7e-27  Score=190.12  Aligned_cols=127  Identities=24%  Similarity=0.290  Sum_probs=81.7

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHH
Q psy5490          21 MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLM  100 (352)
Q Consensus        21 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~  100 (352)
                      ..|..|+||||+|+..|+.+++++|+++|+++   +..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~   81 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP---NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLH   81 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHH
Confidence            45666666777776666666777666666663   445566666666666666666666666666666666666666666


Q ss_pred             HHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHc
Q psy5490         101 EAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN  151 (352)
Q Consensus       101 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  151 (352)
                      +|+..|+.+++++|+++|++++. .+..|.||||+|+..+..+++++|.+.
T Consensus        82 ~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSYGASRNA-VNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            66666666666666666666665 355566666666666666665555544

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=3.8e-29  Score=232.80  Aligned_cols=174  Identities=17%  Similarity=0.069  Sum_probs=141.3

Q ss_pred             ccHHHHHHcC-CCCCC------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHH
Q psy5490           7 ESPLTLAACG-GHVNM------PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLAL   79 (352)
Q Consensus         7 ~t~L~lA~~~-~~~n~------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~   79 (352)
                      .++++.|... ++...      .+.+++||||+|+..|+.++|++|+++|+.....+..+..|+||||+|+..|+.++|+
T Consensus        66 ll~~~~a~~~~~~~~~~~~l~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~  145 (376)
T 2aja_A           66 LLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLN  145 (376)
T ss_dssp             HHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHH
Confidence            3466666653 34332      2566789999999999999999999999843323334467889999999999999999


Q ss_pred             HHHHcCCCC---CCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCccc-ccccccCcHHHHHH-HcCCHHHHHHHHHcCCC
Q psy5490          80 LLIERGANI---EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA-HTEETQETALTLAC-CGGFLDVADFLLKNGAN  154 (352)
Q Consensus        80 ~Ll~~g~~~---~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~  154 (352)
                      +|+++|+++   +..+.+ +||||+|+..|+.++|++|+++|++++. ..+..|.||||+|+ ..|+.++|++|+++|++
T Consensus       146 ~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~  224 (376)
T 2aja_A          146 RLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  224 (376)
T ss_dssp             HHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             HHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc
Confidence            999999763   222223 8999999999999999999999999775 13556899999999 99999999999998753


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q psy5490         155 IELGASTPLMEAAQEGHLELVRYLLDSGAQE  185 (352)
Q Consensus       155 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  185 (352)
                          |.|||++|+..|+.+++++|+++|++.
T Consensus       225 ----~~taL~~Aa~~g~~evv~lL~~~ga~~  251 (376)
T 2aja_A          225 ----LAYAEIHEFEYGEKYVNPFIARHVNRL  251 (376)
T ss_dssp             ----HHHHHHCTTTTTTTTHHHHHHHHHHHH
T ss_pred             ----cchHHHHHHHCCCHHHHHHHHhcCccc
Confidence                789999999999999999999998764

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=7.3e-27  Score=196.06  Aligned_cols=140  Identities=24%  Similarity=0.226  Sum_probs=127.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCChHHHH
Q psy5490          23 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN-DEGYTPLME  101 (352)
Q Consensus        23 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d-~~G~t~L~~  101 (352)
                      +.+|+||||+|+..|+.+++++|++ |+++   +..|..|+||||+|+..|+.++|++|+++|++++.++ ..|+||||+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~---~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDV---DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            5578999999999999999999999 8884   6677999999999999999999999999999999998 899999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q psy5490         102 AAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDS  181 (352)
Q Consensus       102 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  181 (352)
                      |+..|+.+++++|+++|++++. .+..|.||||+|+..++.              ..+.++|++|+..|+.+++++|.++
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~--------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADIEV-EDERGLTALELAREILKT--------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHHHHT--------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHhcCcHHHHHHHHHcCCCCcC-CCCCCCCHHHHHHHhccC--------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            9999999999999999999998 577899999999975322              1267999999999999999999865

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=7.5e-28  Score=202.71  Aligned_cols=147  Identities=14%  Similarity=0.064  Sum_probs=127.5

Q ss_pred             CccHHHHHHcCCCC-----------CCCC-CCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCcCCCCCCCChHHHHH
Q psy5490           6 FESPLTLAACGGHV-----------NMPT-DSFESPLTLAACGGHV----DLALLLIERGANIEEVNMPTDSFESPLTLA   69 (352)
Q Consensus         6 g~t~L~lA~~~~~~-----------n~~d-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A   69 (352)
                      +.++|+.|+..|++           +..+ ..|+||||+|+..|+.    +++++||++|+++   |.+|..|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv---n~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI---KSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS---SCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC---CCCCCCCCcHHHHH
Confidence            35678888876664           4445 6799999999999985    5999999999995   66779999999999


Q ss_pred             HHcCC------HHHHHHHHHcCCCCCCcCCCCC-hHHHHHHHcC-----cHHHHHHHHh-cCCCcccccccccCcHHHHH
Q psy5490          70 ACGGH------VDLALLLIERGANIEEVNDEGY-TPLMEAAREG-----HEEMVCVLLQ-KGAKINAHTEETQETALTLA  136 (352)
Q Consensus        70 ~~~g~------~~~v~~Ll~~g~~~~~~d~~G~-t~L~~A~~~g-----~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A  136 (352)
                      +..|+      .++|++|+++|++++.+|..|+ ||||+|+..+     +.+++++|++ +|++++. .+..|.||||+|
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~-~d~~G~TpL~~A  161 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI-KDKWGLTALEFV  161 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC-CCTTSCCHHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc-cCCCCCCHHHHH
Confidence            99987      6899999999999999999999 9999999944     4679999999 9999998 577899999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCC
Q psy5490         137 CCGGFLDVADFLLKNGANIE  156 (352)
Q Consensus       137 ~~~g~~~~v~~Ll~~g~~~~  156 (352)
                      +..|+.+++++|+++..+.+
T Consensus       162 ~~~~~~~~v~~L~~~~~~~~  181 (186)
T 3t8k_A          162 KRCQKPIALKMMEDYIKKYN  181 (186)
T ss_dssp             HTTTCHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHHHh
Confidence            99999999999998754433

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.5e-26  Score=184.66  Aligned_cols=126  Identities=25%  Similarity=0.339  Sum_probs=114.9

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHH
Q psy5490          57 MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLA  136 (352)
Q Consensus        57 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  136 (352)
                      .+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A   83 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT-TGYQNDSPLHDA   83 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCGGGCCHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC-cCCCCCCHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999999999998 577899999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCC
Q psy5490         137 CCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGA  183 (352)
Q Consensus       137 ~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga  183 (352)
                      +..|+.+++++|+++|++++.   .|.|||++|+..+..+++++|.+.+.
T Consensus        84 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            999999999999999999754   78999999999999999998877654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=3.6e-29  Score=232.96  Aligned_cols=144  Identities=21%  Similarity=0.145  Sum_probs=122.4

Q ss_pred             CCCCccHHHHHHcCCCCCC----------------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHH
Q psy5490           3 TDSFESPLTLAACGGHVNM----------------PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPL   66 (352)
Q Consensus         3 ~~~g~t~L~lA~~~~~~n~----------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~L   66 (352)
                      +.+++|+||+|+..|++++                .+..|.||||+|+..|+.++|++|+++|+++...+..+.+ +|||
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            3467899999998887543                2446789999999999999999999999764322222233 8999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCC--cCCCCChHHHHHH-HcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHH
Q psy5490          67 TLAACGGHVDLALLLIERGANIEE--VNDEGYTPLMEAA-REGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLD  143 (352)
Q Consensus        67 h~A~~~g~~~~v~~Ll~~g~~~~~--~d~~G~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~  143 (352)
                      |+|+..|+.++|++|+++|++++.  .|..|+||||+|+ ..|+.++|++|+++|+        .|.||||+|+..|+.+
T Consensus       168 h~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~e  239 (376)
T 2aja_A          168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKY  239 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTT
T ss_pred             HHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHH
Confidence            999999999999999999999887  8889999999999 9999999999999763        2789999999999999


Q ss_pred             HHHHHHHcCCCC
Q psy5490         144 VADFLLKNGANI  155 (352)
Q Consensus       144 ~v~~Ll~~g~~~  155 (352)
                      ++++|+++|+++
T Consensus       240 vv~lL~~~ga~~  251 (376)
T 2aja_A          240 VNPFIARHVNRL  251 (376)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHhcCccc
Confidence            999999887543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=2.4e-26  Score=208.18  Aligned_cols=143  Identities=21%  Similarity=0.166  Sum_probs=120.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcC---CCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCcCCCCChHH
Q psy5490          26 FESPLTLAACGGHVDLALLLIERGANIEEVN---MPTDSFESPLTLAACG---GHVDLALLLIERGANIEEVNDEGYTPL   99 (352)
Q Consensus        26 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~d~~G~t~L   99 (352)
                      ..++|+.|+..|+++.+++|++.|++++...   ..+..|+||||+|+..   |++++|++|+++|++++.+|..|+|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            4577999999999999999999999864310   0468899999999987   899999999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCHHHHHHHcCCH
Q psy5490         100 MEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHL  172 (352)
Q Consensus       100 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~g~t~L~~A~~~~~~  172 (352)
                      |+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++   .|.||||+|+.+|+.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGT-VNEAGETALDIARKKHHKECEELLEQAQAG---TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSC-CCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---TTSSCCC--------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---CCCChhHHHHhcCCc
Confidence            999999999999999999999998 577899999999999999999999999887   378999999988864

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=5.3e-27  Score=202.84  Aligned_cols=134  Identities=23%  Similarity=0.355  Sum_probs=90.8

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhc-CCCcccccccccCcHHHHHHH
Q psy5490          60 DSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQK-GAKINAHTEETQETALTLACC  138 (352)
Q Consensus        60 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~  138 (352)
                      ..|.|+||+|+..|+.++|++|++.|++++.+|..|+||||+|+..|+.++|++|+++ |++++. .+..|+||||+|+.
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~-~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ-QNKLGDTALHAAAW  149 (222)
T ss_dssp             EEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCC-CCTTSCCHHHHHHH
T ss_pred             cccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccc-cCCCCCCHHHHHHH
Confidence            4567788888888888888888888888877777788888888888888888888877 777776 46667788888888


Q ss_pred             cCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHH
Q psy5490         139 GGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDIL  194 (352)
Q Consensus       139 ~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~  194 (352)
                      .|+.+++++|+++|++++.   .|.|||++|+..++.++++.|++.|+.....+..+.+
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~l  208 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYL  208 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC------------------
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhhc
Confidence            8888888888888777644   5778888888888888888888888877665555444

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=1.4e-25  Score=175.61  Aligned_cols=112  Identities=26%  Similarity=0.347  Sum_probs=92.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHH
Q psy5490          23 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEA  102 (352)
Q Consensus        23 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A  102 (352)
                      +..|.|+||+|+..|+.+++++|++.|+++   +..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT---TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc---CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            446778888888888888888888888874   55667888888888888888888888888888888888888888888


Q ss_pred             HHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHH
Q psy5490         103 AREGHEEMVCVLLQKGAKINAHTEETQETALTLACC  138 (352)
Q Consensus       103 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~  138 (352)
                      +..|+.+++++|+++|++++. .+..|.||||+|+.
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKTV-KGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCCC
T ss_pred             HHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHhCC
Confidence            888888888888888888887 46678888888843

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=1.4e-25  Score=193.94  Aligned_cols=131  Identities=24%  Similarity=0.300  Sum_probs=113.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCChHHHH
Q psy5490          23 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIER-GANIEEVNDEGYTPLME  101 (352)
Q Consensus        23 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~d~~G~t~L~~  101 (352)
                      +..|.||||+|+..|+.++|++|++.|+++   +.+|..|+||||+|+..|+.++|++|+++ |++++.+|..|+||||+
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~  146 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGV---NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA  146 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCc---cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence            446789999999999999999999999984   66778999999999999999999999998 99999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy5490         102 AAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL  157 (352)
Q Consensus       102 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  157 (352)
                      |+..|+.+++++|+++|++++. .+..|.||||+|+..|+.++++.|++.|+..+.
T Consensus       147 A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~  201 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAKGARTDL-RNIEKKLAFDMATNAACASLLKKKQGTDAVRTL  201 (222)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSCC-CCTTSCCHHHHCCSHHHHHHHC-----------
T ss_pred             HHHcCCHHHHHHHHHcCCCCcc-ccCCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence            9999999999999999999998 577899999999999999999999999987654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=1.3e-24  Score=170.07  Aligned_cols=114  Identities=25%  Similarity=0.332  Sum_probs=102.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHH
Q psy5490          59 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACC  138 (352)
Q Consensus        59 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~  138 (352)
                      +..|.|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|+||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999998 47789999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHH
Q psy5490         139 GGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLE  173 (352)
Q Consensus       139 ~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~  173 (352)
                      .|+.+++++|+++|++++.   .|+|||++|...+..+
T Consensus        83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence            9999999999999998755   7899999995443333

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=1.8e-24  Score=193.69  Aligned_cols=125  Identities=21%  Similarity=0.194  Sum_probs=83.8

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCC------CcCCCCChHHHHHHHc---CcHHHHHHHHhcCCCcccccccccC
Q psy5490          60 DSFESPLTLAACGGHVDLALLLIERGANIE------EVNDEGYTPLMEAARE---GHEEMVCVLLQKGAKINAHTEETQE  130 (352)
Q Consensus        60 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~------~~d~~G~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~  130 (352)
                      ....++|+.|+..|+++.++.|++.|++++      ..|..|+||||+|+..   |+.+++++|+++|++++. .+..|+
T Consensus       128 ~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~-~d~~g~  206 (278)
T 1dcq_A          128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-QTGKGS  206 (278)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC-CCTTCC
T ss_pred             chhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccc-cCCCCC
Confidence            344566777777777777777777666633      3356677777777776   667777777777777766 355567


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q psy5490         131 TALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQE  185 (352)
Q Consensus       131 t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  185 (352)
                      ||||+|+..|+.+++++|+++|++++.   .|.||||+|+..|+.+++++|+++|++.
T Consensus       207 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            777777777777777777777776543   5667777777777777777777776654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=2.5e-24  Score=199.60  Aligned_cols=145  Identities=21%  Similarity=0.270  Sum_probs=116.7

Q ss_pred             CCCCCCChHHHHHHHc-CCHHHHHHHHHcCCCCCCcCCCC--CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCh
Q psy5490          21 MPTDSFESPLTLAACG-GHVDLALLLIERGANIEEVNMPT--DSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYT   97 (352)
Q Consensus        21 ~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~n~~~--~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t   97 (352)
                      ..+..+.|+||+|+.. |+++++++||++|+++   +..+  ..|+||||+|+..|++++|++|+++|++++.+|..|+|
T Consensus       194 l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv---n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~T  270 (368)
T 3jue_A          194 LGSLHPGALLFRASGHPPSLPTMADALAHGADV---NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRG  270 (368)
T ss_dssp             ---CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT---TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cccCCCCcHHHHHHHccCCHHHHHHHHHcCCCC---CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            3345567899999999 9999999999999996   4444  78999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCC------CCCCCCHHHHHHHc
Q psy5490          98 PLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI------ELGASTPLMEAAQE  169 (352)
Q Consensus        98 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~g~t~L~~A~~~  169 (352)
                      |||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.+...      +..+.|+++++...
T Consensus       271 pLh~A~~~g~~~~v~~LL~~Gad~~~-~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          271 PLHHATILGHTGLACLFLKRGADLGA-RDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHHHHcCcHHHHHHHHHCcCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            99999999999999999999999998 5778999999999999999999999887432      12455777665543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=4.6e-23  Score=184.45  Aligned_cols=126  Identities=20%  Similarity=0.210  Sum_probs=118.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCC---cCCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCcCCCCChHHHH
Q psy5490          28 SPLTLAACGGHVDLALLLIERGANIEE---VNMPTDSFESPLTLAACG---GHVDLALLLIERGANIEEVNDEGYTPLME  101 (352)
Q Consensus        28 t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~n~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~  101 (352)
                      ++|+.|+..|+++.++.|++.|.++..   ++..+..|+||||+|+..   |+.++|++|+++|++++.+|..|+||||+
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~  211 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY  211 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence            689999999999999999999998653   455678899999999999   89999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490         102 AAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN  154 (352)
Q Consensus       102 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  154 (352)
                      |+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++
T Consensus       212 A~~~g~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          212 CCLTDNAECLKLLLRGKASIEI-ANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHcCCCCCC-ccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999998 577899999999999999999999999984

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.90  E-value=3.1e-23  Score=153.99  Aligned_cols=92  Identities=43%  Similarity=0.672  Sum_probs=59.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHc
Q psy5490          26 FESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE  105 (352)
Q Consensus        26 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~  105 (352)
                      |+||||+|+..|+.+++++|+++|+++   +.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~---n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            566666666666666666666666663   44456666666666666666666666666666666666666666666666


Q ss_pred             CcHHHHHHHHhcCCC
Q psy5490         106 GHEEMVCVLLQKGAK  120 (352)
Q Consensus       106 g~~~~v~~Ll~~g~~  120 (352)
                      |+.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            666666666666653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=1.9e-24  Score=181.18  Aligned_cols=150  Identities=22%  Similarity=0.189  Sum_probs=123.6

Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCc--------CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHH
Q psy5490          33 AACGGHVDLALLLIERGANIEEV--------NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAR  104 (352)
Q Consensus        33 A~~~g~~~~v~~Ll~~g~~~~~~--------n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~  104 (352)
                      |++.|..+++++|++.+......        ...+..|+||||+|+..|+.+++++|++ |++++.+|..|+||||+|+.
T Consensus         7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~   85 (183)
T 3deo_A            7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAG   85 (183)
T ss_dssp             EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHH
T ss_pred             HHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHH
Confidence            34455566666666443321110        0113578999999999999999999999 99999999999999999999


Q ss_pred             cCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHc
Q psy5490         105 EGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDS  181 (352)
Q Consensus       105 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~  181 (352)
                      .|+.+++++|+++|++++...+..|+||||+|+..|+.+++++|+++|++++.   .|+||||+|++.++.+.++.+++.
T Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~  165 (183)
T 3deo_A           86 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF  165 (183)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHH
Confidence            99999999999999999986558899999999999999999999999999754   789999999988777666666655


Q ss_pred             CC
Q psy5490         182 GA  183 (352)
Q Consensus       182 ga  183 (352)
                      ++
T Consensus       166 a~  167 (183)
T 3deo_A          166 GR  167 (183)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=5.4e-23  Score=152.67  Aligned_cols=93  Identities=43%  Similarity=0.666  Sum_probs=83.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcC
Q psy5490          61 SFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGG  140 (352)
Q Consensus        61 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  140 (352)
                      +|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|+||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcC
Confidence            478999999999999999999999999999999999999999999999999999999999988 4677889999999999


Q ss_pred             CHHHHHHHHHcCCC
Q psy5490         141 FLDVADFLLKNGAN  154 (352)
Q Consensus       141 ~~~~v~~Ll~~g~~  154 (352)
                      +.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999988874

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=2.1e-23  Score=183.12  Aligned_cols=130  Identities=22%  Similarity=0.202  Sum_probs=115.0

Q ss_pred             CCCccHHHHHHcCC------------CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC-CCCChHHHHHH
Q psy5490           4 DSFESPLTLAACGG------------HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPT-DSFESPLTLAA   70 (352)
Q Consensus         4 ~~g~t~L~lA~~~~------------~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~-~~g~t~Lh~A~   70 (352)
                      ..|+|+||+|+..|            ++|..|..|+||||+|+..|+.++|++|+++|+++   +.++ ..|+||||+|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL---DHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT---TCCCSSSCCCHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC---CcCCCCCCCCHHHHHH
Confidence            36889999999755            46777999999999999999999999999999995   5555 77999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHH
Q psy5490          71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLK  150 (352)
Q Consensus        71 ~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  150 (352)
                      ..|+.++|++|+++|++++.+|..|+||||+|+..++                  ...+.++||+|+..|+.+++++|++
T Consensus       120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHHH
Confidence            9999999999999999999999999999999986222                  2347899999999999999999999


Q ss_pred             cCCC
Q psy5490         151 NGAN  154 (352)
Q Consensus       151 ~g~~  154 (352)
                      ++.+
T Consensus       182 ~~~~  185 (244)
T 3ui2_A          182 QVFE  185 (244)
T ss_dssp             HHEE
T ss_pred             hccc
Confidence            7554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=1.5e-22  Score=183.19  Aligned_cols=122  Identities=22%  Similarity=0.186  Sum_probs=114.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCC------cCCCCChHHHHHHHc---CcHHHHHHHHhcCCCcccccccccCcH
Q psy5490          62 FESPLTLAACGGHVDLALLLIERGANIEE------VNDEGYTPLMEAARE---GHEEMVCVLLQKGAKINAHTEETQETA  132 (352)
Q Consensus        62 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~------~d~~G~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~t~  132 (352)
                      ..++|+.|+..|++++|++|++.|++++.      .+..|+||||+|+..   |+.+++++|+++|++++. .+..|+||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~-~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA-KAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTC-CCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCC-CCCCCCCH
Confidence            45779999999999999999999999998      688999999999997   899999999999999998 46789999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490         133 LTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQ  184 (352)
Q Consensus       133 L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~  184 (352)
                      ||+|+..|+.+++++|+++|++++.   .|.|||++|+..|+.+++++|+++|++
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence            9999999999999999999999855   689999999999999999999998875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=1.7e-22  Score=187.24  Aligned_cols=124  Identities=23%  Similarity=0.252  Sum_probs=115.7

Q ss_pred             CCCChHHHHHHHc-CCHHHHHHHHHcCCCCCCcC--CCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHH
Q psy5490          60 DSFESPLTLAACG-GHVDLALLLIERGANIEEVN--DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLA  136 (352)
Q Consensus        60 ~~g~t~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~d--~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  136 (352)
                      ..+.|+||+|+.. |++++|++|+++|++++..+  ..|+||||+|+..|+.++|++|+++|++++. .+..|+||||+|
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~-~d~~G~TpLh~A  275 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ-ADSAGRGPLHHA  275 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHH
Confidence            3456899999999 99999999999999999998  8999999999999999999999999999998 577899999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490         137 CCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQ  184 (352)
Q Consensus       137 ~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~  184 (352)
                      +..|+.+++++|+++|++++.   .|.||||+|+..|+.+++++|++.+..
T Consensus       276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999999865   689999999999999999999988754

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=9.9e-23  Score=157.25  Aligned_cols=108  Identities=32%  Similarity=0.491  Sum_probs=84.0

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHH
Q psy5490          21 MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLM  100 (352)
Q Consensus        21 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~  100 (352)
                      ..|.+|+||||+|+..|+.+++++|+++|+++   +..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV---NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH   80 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS---SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            45677888888888888888888888888774   556677888888888888888888888888888888888888888


Q ss_pred             HHHHcCcHHHHHHHHhcCCCcccccccccCcH
Q psy5490         101 EAAREGHEEMVCVLLQKGAKINAHTEETQETA  132 (352)
Q Consensus       101 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~  132 (352)
                      +|+..|+.+++++|+++|++++.. +..|.++
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~n~~-~~~~~~~  111 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADVNAR-SWGSSHH  111 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSHHHH-SCCCC--
T ss_pred             HHHHCCCHHHHHHHHHcCCCCCcC-Ccccccc
Confidence            888888888888888888888774 4445544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=4.2e-22  Score=153.73  Aligned_cols=100  Identities=33%  Similarity=0.492  Sum_probs=91.1

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHH
Q psy5490          57 MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLA  136 (352)
Q Consensus        57 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  136 (352)
                      .+|.+|+|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-RSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTC-CCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc-cCCCCCCHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999999999988 466788999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCC
Q psy5490         137 CCGGFLDVADFLLKNGANIEL  157 (352)
Q Consensus       137 ~~~g~~~~v~~Ll~~g~~~~~  157 (352)
                      +..|+.+++++|+++|+++|.
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~  103 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNA  103 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHH
T ss_pred             HHCCCHHHHHHHHHcCCCCCc
Confidence            999999999999999988754

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.82  E-value=6.4e-20  Score=140.44  Aligned_cols=89  Identities=28%  Similarity=0.433  Sum_probs=54.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHH
Q psy5490          23 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEA  102 (352)
Q Consensus        23 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A  102 (352)
                      |.+|+|+||+|+..|+.+++++|+++|+++   +.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i---~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGADV---AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            555666666666666666666666666653   34445666666666666666666666666666666666666666666


Q ss_pred             HHcCcHHHHHHH
Q psy5490         103 AREGHEEMVCVL  114 (352)
Q Consensus       103 ~~~g~~~~v~~L  114 (352)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            666666666654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=1.8e-19  Score=137.90  Aligned_cols=92  Identities=33%  Similarity=0.450  Sum_probs=81.6

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHH
Q psy5490          56 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTL  135 (352)
Q Consensus        56 n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~  135 (352)
                      ...+.+|.|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~   96 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDI   96 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cccCCCcHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999998 46678899999


Q ss_pred             HHHcCCHHHHHHH
Q psy5490         136 ACCGGFLDVADFL  148 (352)
Q Consensus       136 A~~~g~~~~v~~L  148 (352)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999998876

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=88.62  E-value=1.8  Score=34.84  Aligned_cols=128  Identities=14%  Similarity=0.079  Sum_probs=84.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCC-hHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHH
Q psy5490          26 FESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFE-SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAR  104 (352)
Q Consensus        26 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~-t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~  104 (352)
                      -++-|-+|+..|++++...+.+..-+        ..-| ..=..|...|++++++.-.++-.|+.       ..+.+...
T Consensus         8 ~~~rF~LAL~lg~l~~A~e~a~~l~~--------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~-------~L~~Ly~~   72 (177)
T 3mkq_B            8 PHIRFDLALEYGNLDAALDEAKKLND--------SITWERLIQEALAQGNASLAEMIYQTQHSFD-------KLSFLYLV   72 (177)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHCC--------HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH-------HHHHHHHH
T ss_pred             hHHHHHHHHhcCCHHHHHHHHHHhCC--------HHHHHHHHHHHHHcCChHHHHHHHHHhCCHH-------HHHHHHHH
Confidence            35678899999999988777664211        1223 33356668899999999888766654       24455555


Q ss_pred             cCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCH-HHHHHHHHcCCCCCCCCC--CHHHHHHHcCCHHHHHHHHH
Q psy5490         105 EGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFL-DVADFLLKNGANIELGAS--TPLMEAAQEGHLELVRYLLD  180 (352)
Q Consensus       105 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~g~--t~L~~A~~~~~~~~v~~Ll~  180 (352)
                      .|+.+-++.|.+..    . ....-..+++.+-..|.+ +++++|++.       |+  -+...|..+|..++.+-|++
T Consensus        73 tg~~e~L~kla~iA----~-~~g~~n~af~~~l~lGdv~~~i~lL~~~-------~r~~eA~~~A~t~g~~~~a~~~~~  139 (177)
T 3mkq_B           73 TGDVNKLSKMQNIA----Q-TREDFGSMLLNTFYNNSTKERSSIFAEG-------GSLPLAYAVAKANGDEAAASAFLE  139 (177)
T ss_dssp             HTCHHHHHHHHHHH----H-HTTCHHHHHHHHHHHTCHHHHHHHHHHT-------TCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHH----H-HCccHHHHHHHHHHcCCHHHHHHHHHHC-------CChHHHHHHHHHcCcHHHHHHHHH
Confidence            67776666554431    0 111234677778777876 578888887       44  35567778888888887764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=84.21  E-value=3.1  Score=39.42  Aligned_cols=140  Identities=16%  Similarity=0.062  Sum_probs=81.0

Q ss_pred             HHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcC-C-------------HHHHHHHHHcCCCCCCc
Q psy5490          30 LTLAACGGHVD----LALLLIERGANIEEVNMPTDSFESPLTLAACGG-H-------------VDLALLLIERGANIEEV   91 (352)
Q Consensus        30 L~~A~~~g~~~----~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g-~-------------~~~v~~Ll~~g~~~~~~   91 (352)
                      |...++.|+++    +++.+.+.|..++.      .-++.|..++... .             .++++.+.+.|..+|..
T Consensus        33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~------~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~  106 (501)
T 4g26_A           33 LDMCSKKGDVLEALRLYDEARRNGVQLSQ------YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA  106 (501)
T ss_dssp             HHHTTTSCCHHHHHHHHHHHHHHTCCCCH------HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHcCCCCCH------hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence            45555678864    45555666776533      2356666665432 1             35666777788877643


Q ss_pred             CCCCChHHHHHHHcCcHHHHH----HHHhcCCCcccccccccCcHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCC-H
Q psy5490          92 NDEGYTPLMEAAREGHEEMVC----VLLQKGAKINAHTEETQETALTLACCGGFLD----VADFLLKNGANIELGAST-P  162 (352)
Q Consensus        92 d~~G~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~g~t-~  162 (352)
                      ..  .+.|...+..|..+.+.    .+.+.|..++...   ..+.|...+..|..+    +.+.+.+.|...|..-.+ .
T Consensus       107 ty--n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t---yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L  181 (501)
T 4g26_A          107 TF--TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS---YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL  181 (501)
T ss_dssp             HH--HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH---HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce---ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            32  23445566778765444    4445677766531   235666678888865    444455677766653333 4


Q ss_pred             HHHHHHcCCHHHHHHHHH
Q psy5490         163 LMEAAQEGHLELVRYLLD  180 (352)
Q Consensus       163 L~~A~~~~~~~~v~~Ll~  180 (352)
                      +...++.|+.+-+..|++
T Consensus       182 i~~~~~~g~~d~A~~ll~  199 (501)
T 4g26_A          182 LKVSMDTKNADKVYKTLQ  199 (501)
T ss_dssp             HHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhhCCCHHHHHHHHH
Confidence            445567788755544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	352
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-31
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-25
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-25
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-24
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-23
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-22
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-21
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-17
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-16
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-13
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	9e-11
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-12
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-11
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-08
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	7e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	1e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	6e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 1e-31
 Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 38/190 (20%)

Query: 29  PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
           PL +A+  GH+ +   L++RGA+    N+     E+PL +AA  GH ++A  L++  A +
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGAS---PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 89  EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTE---------------------- 126
                +  TPL  AAR GH  MV +LL+  A  N  T                       
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 127 ----------ETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLE 173
                     +   T L +A   G + VA+ LL+  A+         TPL  A    +L+
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 179

Query: 174 LVRYLLDSGA 183
           +V+ LL  G 
Sbjct: 180 IVKLLLPRGG 189

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 2e-24
 Identities = 56/259 (21%), Positives = 88/259 (33%), Gaps = 69/259 (26%)

Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN--------------- 56
           L     H N    +  +PL +A    ++D+  LL+ RG +                    
Sbjct: 151 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ 210

Query: 57  ---------------MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLME 101
                            +    +PL LAA  GH ++  LL+ + AN    N  G TPL  
Sbjct: 211 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL 270

Query: 102 AAREGHEEMVCVLLQKGAKINAHTEETQ-------------------------------- 129
            A+EGH  +  VL++ G  ++A T                                    
Sbjct: 271 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 330

Query: 130 ETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYL---LDSGA 183
            + L  A   G  D+   LLKNGA+    +S   TPL  A + G++ +   L    D  +
Sbjct: 331 YSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS 390

Query: 184 QEMQTKHIDILEFKKRKQE 202
             +       + F +   E
Sbjct: 391 -FVLVSDKHRMSFPETVDE 408

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (245), Expect = 9e-24
 Identities = 61/217 (28%), Positives = 87/217 (40%), Gaps = 47/217 (21%)

Query: 7   ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
           E+PL +AA  GH             VN      ++PL  AA  GH ++  LL+E  AN  
Sbjct: 34  ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 93

Query: 54  E------------------------------VNMPTDSFESPLTLAACGGHVDLALLLIE 83
                                              T    +PL +AA  G V +A LL+E
Sbjct: 94  LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 153

Query: 84  RGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLD 143
           R A+       G TPL  A    + ++V +LL +G   ++       T L +A     ++
Sbjct: 154 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN-GYTPLHIAAKQNQVE 212

Query: 144 VADFLLKNGANIELGAS---TPLMEAAQEGHLELVRY 177
           VA  LL+ G +    +    TPL  AAQEGH E+V  
Sbjct: 213 VARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL 249

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 6e-21
 Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 20/166 (12%)

Query: 8   SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
           +PL LAA  GH              N+   S  +PL L A  GHV +A +LI+ G     
Sbjct: 233 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM--- 289

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
           V+  T    +PL +A+  G++ L   L++  A++      GY+PL +AA++GH ++V +L
Sbjct: 290 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 349

Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFL---LKNGANIEL 157
           L+ GA  N  + +   T L +A   G++ V D L       + + +
Sbjct: 350 LKNGASPNEVSSD-GTTPLAIAKRLGYISVTDVLKVVTDETSFVLV 394

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 7e-21
 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 97  TPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
           TPL  A+  GH  +V  LLQ+GA  N    +  ET L +A   G  +VA +LL+N A + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVK-VETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 157 LGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKH 190
             A    TPL  AA+ GH  +V+ LL++ A       
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT 97

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 3e-25
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 4/145 (2%)

Query: 15  CGGHVNMPTDSFESPLTLAACGGHVDLA-LLLIERGANIEEVNMPTDSFESPLTLAACGG 73
                        + L  AA  GHV++  +LL E GA++   +    +      L++   
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

Query: 74  HVD-LALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL-QKGAKINAHTEETQET 131
            V+ +  LL++ GA++    + G TPL+ A  + H  +V  LL Q+  +IN    +  +T
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD-GKT 255

Query: 132 ALTLACCGGFLDVADFLLKNGANIE 156
           AL LA       +A+ L K GA+ +
Sbjct: 256 ALLLAVELKLKKIAELLCKRGASTD 280

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 9e-24
 Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 17/185 (9%)

Query: 15  CGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFE-------SPLT 67
            G  VN       +    AA  G V     L +RGAN+       +  E       + L 
Sbjct: 94  KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153

Query: 68  LAACGGHVDLA-LLLIERGANIEEVNDEG----YTPLMEAAREGHEEMVCVLLQKGAKIN 122
            AA  GHV++  +LL E GA++   ++ G       L+ +     E +  +LL  GA +N
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 213

Query: 123 AHTEETQETALTLACCGGFLDVADFLL-KNGANIELGAS---TPLMEAAQEGHLELVRYL 178
              E   +T L LA     L +   LL +    I    S   T L+ A +    ++   L
Sbjct: 214 VRGER-GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

Query: 179 LDSGA 183
              GA
Sbjct: 273 CKRGA 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 1e-16
 Identities = 51/167 (30%), Positives = 74/167 (44%), Gaps = 16/167 (9%)

Query: 27  ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
              L  A     VDL   L+E GAN+       +   +PL  A      D+  LL+  GA
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQE--EEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 87  NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVAD 146
           +       G TP + AA  G  +++ + L KGA +N        TA   A   G +    
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD-FYGFTAFMEAAVYGKVKALK 122

Query: 147 FLLKNGANIE-------------LGASTPLMEAAQEGHLELVRYLLD 180
           FL K GAN+               G +T LM+AA++GH+E+++ LLD
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 1e-11
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIER-GANIEEVNMPTDSFESPLTLAA 70
           L   G  VN+  +  ++PL LA    H+ L   L+E+    I   N      ++ L LA 
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI---NDTDSDGKTALLLAV 261

Query: 71  CGGHVDLALLLIERGANIEEVN 92
                 +A LL +RGA+ +  +
Sbjct: 262 ELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 3e-11
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 94  EGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLL 149
           E    L++A +    ++V  LL+ GA +N   EE   T L  A      D+ + LL
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNM 57
           L      +N      ++ L LA       +A LL +RGA+ +  ++
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 161 TPLMEAAQEGHLELVRYLLDSGA 183
             L++A Q   ++LV+ LL+ GA
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGA 29

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  101 bits (253), Expect = 4e-25
 Identities = 31/172 (18%), Positives = 51/172 (29%), Gaps = 18/172 (10%)

Query: 29  PLTLAACGGHVDLALLLIERGANIEE--------VNMPTDSFESPLTLAACGGH---VDL 77
            + L        +  LL    A+            +      E    +AA  G    +D 
Sbjct: 49  HIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDT 108

Query: 78  ALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQ-ETALTLA 136
             LL+     ++ +  E Y     AA  GH  ++  L +          + +   A  LA
Sbjct: 109 LCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA 168

Query: 137 CCGGFLDVADFLLKNGANIEL------GASTPLMEAAQEGHLELVRYLLDSG 182
              G L V + L +                     A   GH  ++ +LLD  
Sbjct: 169 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP 220

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =   99 bits (248), Expect = 2e-24
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 14/173 (8%)

Query: 19  VNMPTDSFESPLTLAACGGH---VDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
            +      E    +AA  G    +D   LL+        V +          LAA  GH+
Sbjct: 83  AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI---VKVIQAENYQAFRLAAENGHL 139

Query: 76  DLALLLIERGA--NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQE--T 131
            +   L E      +  +  E Y     AA  GH  ++  L +          + +    
Sbjct: 140 HVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYA 199

Query: 132 ALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQ 184
               A   G  +V +FLL     +    +   +   + G   +  ++     +
Sbjct: 200 FRWAAVGRGHHNVINFLLDCPVML----AYAEIHEFEYGEKYVNPFIARHVNR 248

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 97.3 bits (241), Expect = 2e-23
 Identities = 37/227 (16%), Positives = 54/227 (23%), Gaps = 44/227 (19%)

Query: 7   ESPLTLAACGGH----------------VNMPTDSFESPLTLAACGGHVDLALLLIERGA 50
           E    +AA  G                 V +          LAA  GH+ +   L E   
Sbjct: 91  EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 150

Query: 51  NIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV---NDEGYTPLMEAAREGH 107
                            LAA  GH+ +   L E            +  Y     A   GH
Sbjct: 151 TEIMAM-IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH 209

Query: 108 EEMVCVLLQKG---------AKINAHTEETQ------------ETALTLACCGGFLDVAD 146
             ++  LL                                     A  L+   G  D+  
Sbjct: 210 HNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT 269

Query: 147 FLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDI 193
              K+           L+    E  L+ +R+LL     +       I
Sbjct: 270 ---KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI 313

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 82.6 bits (203), Expect = 3e-18
 Identities = 30/218 (13%), Positives = 56/218 (25%), Gaps = 52/218 (23%)

Query: 8   SPLTLAACGGHVN---------------MPTDSFESPLTLAACGGHVDLALLLIERGANI 52
               LAA  GH++               M          LAA  GH+ +   L E     
Sbjct: 128 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 187

Query: 53  EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
               +  +++ +    A   GH ++   L++    +           +     G + +  
Sbjct: 188 ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-------YAEIHEFEYGEKYVNP 240

Query: 113 VLLQKGAKI------------NAHTE----------ETQETALTLACCGGFLDVADFLLK 150
            + +   ++            +   +                L        LD   FLL 
Sbjct: 241 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS 300

Query: 151 NGANIELGA--------STPLMEAAQEGHLELVRYLLD 180
                 L          +  L  A + G+      LL 
Sbjct: 301 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 61.4 bits (148), Expect = 3e-11
 Identities = 17/137 (12%), Positives = 30/137 (21%), Gaps = 17/137 (12%)

Query: 25  SFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIER 84
                       G   +   +      ++E++           L+   G  DL       
Sbjct: 222 MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH-------DAFKLSNPDGVFDLV------ 268

Query: 85  GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA----HTEETQETALTLACCGG 140
             +           L+    E   + +  LL                     L LA   G
Sbjct: 269 TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG 328

Query: 141 FLDVADFLLKNGANIEL 157
                  LL   + + L
Sbjct: 329 NQGACALLLSIPSVLAL 345

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 57.2 bits (137), Expect = 8e-10
 Identities = 14/130 (10%), Positives = 25/130 (19%), Gaps = 14/130 (10%)

Query: 5   SFESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIE----EVNMPTD 60
                       G                     +  A  L       +       +   
Sbjct: 222 MLAYAEIHEFEYGE----KYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF 277

Query: 61  SFESPLTLAACGGHVDLALLLIERGA-----NIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
                L        +D    L+             +  +    L  A R G++    +LL
Sbjct: 278 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 337

Query: 116 QKGAKINAHT 125
                + A T
Sbjct: 338 SIP-SVLALT 346

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 6e-22
 Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 21/189 (11%)

Query: 8   SPLTLAACGGHVNMPTDSFESP-------------LTLAACGGHVDLALLLIERGANIEE 54
           + L  A   GH  +     +               L +AA  G  ++   L+ +GA    
Sbjct: 39  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ--- 95

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
           VN    +  +PL  AA     ++A++L+E GAN +  +    T +  AA +G+ +M+ +L
Sbjct: 96  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 155

Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGH 171
           L   A  N    E   T L LAC    ++ A  L+  GA+I +      TPL   A+ G 
Sbjct: 156 LYYKASTNIQDTE-GNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQ-VAKGGL 213

Query: 172 LELVRYLLD 180
             +++ +++
Sbjct: 214 GLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 2e-14
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 5/119 (4%)

Query: 69  AACGGHVD-LALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEE 127
            A  G ++ L   ++   +     + +  T L  A   GH E+V   L +        ++
Sbjct: 10  LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEF-LLQLGVPVNDKDD 68

Query: 128 TQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
              + L +A   G  ++   LL  GA +        TPL  AA +   E+   LL+ GA
Sbjct: 69  AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 127

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.8 bits (221), Expect = 2e-21
 Identities = 45/208 (21%), Positives = 66/208 (31%), Gaps = 27/208 (12%)

Query: 7   ESPLTLAACGGHVNMPTDSFESPLT-------------LAACGGHVDLALLLIERGANIE 53
           ++ L LAA  G  +     + +                LA        A +L++   +  
Sbjct: 46  QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHP 105

Query: 54  EV-----------NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEA 102
                          P  S       +      +      +    +E  N +G+TPL  A
Sbjct: 106 RDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA 165

Query: 103 AREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS-- 160
                 EMV +L   GA +N        T L LA       V + LLK GA+        
Sbjct: 166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG 225

Query: 161 -TPLMEAAQEGHLELVRYLLDSGAQEMQ 187
            TPL  A    +  L R L   GA E +
Sbjct: 226 RTPLGSALLRPNPILARLLRAHGAPEPE 253

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.7 bits (187), Expect = 1e-16
 Identities = 38/214 (17%), Positives = 57/214 (26%), Gaps = 50/214 (23%)

Query: 20  NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLAL 79
              T+  ++ L LA    H      L+   A  E +++  D  ++ L LAA  G      
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 80  LLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEET----------- 128
            L   GA +      G+T L  A R       CVLLQ          +T           
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 129 --QETALTLACCGGFLDVADFLLKNGANIEL----------------------------- 157
                A   +      +           +E                              
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 158 --------GASTPLMEAAQEGHLELVRYLLDSGA 183
                      TPL  A +     ++  LL +GA
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 4e-06
 Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 6/58 (10%)

Query: 121 INAHTEETQETALTLACCGGFLDVADFLLKNGANIEL------GASTPLMEAAQEGHL 172
           +  +  E  +TAL LA         DFLL   A  E          T L  AA  G  
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.1 bits (196), Expect = 1e-17
 Identities = 34/188 (18%), Positives = 63/188 (33%), Gaps = 26/188 (13%)

Query: 19  VNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLA----ACGG 73
           +N+P D    +PL       +++L   L++ G+N        +  ES L  A        
Sbjct: 99  LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN---RLYGDNMGESCLVKAVKSVNNYD 155

Query: 74  HVDLALLLIERGANIEEVNDEGYTPL------------MEAAREGHEEMVCVLLQKGAKI 121
                 LL      +   +    T L              AA+   + ++  +++K  + 
Sbjct: 156 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP 215

Query: 122 NAHTEETQETALTLACCGGFLDVADFLLKN---GANIELGAS---TPLMEAAQEGHLELV 175
                  +E+            + + L         +    S   T L  AA+ G++ +V
Sbjct: 216 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIV 275

Query: 176 RYLLDSGA 183
             LLD GA
Sbjct: 276 DALLDYGA 283

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.4 bits (150), Expect = 1e-11
 Identities = 16/94 (17%), Positives = 33/94 (35%)

Query: 10  LTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLA 69
             +      +   T+  ES            +   L  +      +N    + ++ L +A
Sbjct: 207 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 266

Query: 70  ACGGHVDLALLLIERGANIEEVNDEGYTPLMEAA 103
           A  G++ +   L++ GA+    N  G  P+   A
Sbjct: 267 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.1 bits (139), Expect = 3e-10
 Identities = 19/149 (12%), Positives = 39/149 (26%), Gaps = 14/149 (9%)

Query: 1   MPTDSFESPLTLAACGGHVNMPTDSFESPLTLAACGGH-------------VDLALLLIE 47
              DS      L      + +      + L                     + +  ++ +
Sbjct: 152 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 211

Query: 48  RGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGH 107
           +   I+      +S  +          ++   L       +   +  G T L  AAR G+
Sbjct: 212 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 271

Query: 108 EEMVCVLLQKGAKINAHTEETQETALTLA 136
             +V  LL  GA      +      +   
Sbjct: 272 ISIVDALLDYGADPFIANKSGL-RPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.8 bits (133), Expect = 2e-09
 Identities = 26/183 (14%), Positives = 53/183 (28%), Gaps = 15/183 (8%)

Query: 1   MPTDSFESPLTLAACGGHVNMPT----DSFESPLTLAACGGHVDLALLLIERGANIEEVN 56
           + +D   SPL +        +         E+ L         ++   L    +N     
Sbjct: 10  LTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEG 69

Query: 57  MPTDSFESPLTLAACGGHVDLALLLIERGANIE-EVNDEGYTPLMEAAREGHEEMVCVLL 115
             ++  +    ++      ++         N+   V++ G TPL       + E+V  L+
Sbjct: 70  GSSN--QQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 127

Query: 116 QKGAKINAHTEETQETALTLACCG-------GFLDVADFLLKNGANIELGASTPLMEAAQ 168
           + G+          E+ L  A           F  + D+L       +    T L     
Sbjct: 128 KHGSNRLYGDNM-GESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIII 186

Query: 169 EGH 171
              
Sbjct: 187 TSG 189

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 74.1 bits (180), Expect = 4e-16
 Identities = 49/202 (24%), Positives = 72/202 (35%), Gaps = 36/202 (17%)

Query: 12  LAACGGHVNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
           L A G  +N   D   E+ L LAA     D A  L++ GA+    +    +       A 
Sbjct: 8   LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAAD 67

Query: 71  CGGHVDL-------------------------------ALLLIERGANIEEVNDEGYTPL 99
             G   +                                  LI   A+I   ++ G T L
Sbjct: 68  AMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTAL 127

Query: 100 MEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA 159
             AA   + E V +LL   A  +   ++  ET L LA   G  + +  LL N AN E+  
Sbjct: 128 HWAAAVNNTEAVNILLMHHANRD-AQDDKDETPLFLAAREGSYEASKALLDNFANREITD 186

Query: 160 S---TPLMEAAQEGHLELVRYL 178
                P   A++  H ++VR L
Sbjct: 187 HMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.6 bits (114), Expect = 2e-07
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 80  LLIERGANIEEVNDE-GYTPLMEAAREGHEEMVCVL 114
            L+ +GA +    D+ G T L  AAR    +    L
Sbjct: 7   DLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.2 bits (105), Expect = 3e-06
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 109 EMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
           +++  LL +GA++NA  ++T ET+L LA      D A  L
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 7/138 (5%)

Query: 44  LLIERGANIEEVNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEA 102
            L+ +GA    +N   D   E+ L LAA     D A  L++ GA+    ++ G TPL  A
Sbjct: 7   DLLAQGAE---LNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 103 AREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS-- 160
                  +  +LL+  A           T L LA       + + L+   A+I    +  
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG 123

Query: 161 -TPLMEAAQEGHLELVRY 177
            T L  AA   + E V  
Sbjct: 124 KTALHWAAAVNNTEAVNI 141

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 4/39 (10%)

Query: 144 VADFLLKNGANIELGA----STPLMEAAQEGHLELVRYL 178
           V   LL  GA +         T L  AA+    +  + L
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 74.8 bits (182), Expect = 6e-16
 Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 14/159 (8%)

Query: 35  CGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVD-----------LALLLIE 83
                 + + ++       ++     +  + L + A     D            A +  +
Sbjct: 116 ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 175

Query: 84  RGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLD 143
             A  +    +G T L  AA+  +  +V  L+ +        +E  +T + LA   G ++
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 144 VADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLL 179
           V  +L++ GA++E   +   T    A    H  +V    
Sbjct: 236 VVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.1 bits (175), Expect = 5e-15
 Identities = 19/102 (18%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 15  CGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGH 74
                +       + L  AA   ++ +   L+    + +  +   +  ++P+ LAA  G 
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK--DKQDEDGKTPIMLAAQEGR 233

Query: 75  VDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQ 116
           +++ + LI++GA++E V+   +T    A    H  +V +  +
Sbjct: 234 IEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 70.1 bits (170), Expect = 2e-14
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 54  EVNMPTDSFESPLTLAACGGHVDLALLLIE-RGANIEEVNDEGYTPLMEAAREGHEEMVC 112
             +       + L  AA   ++ +   L+  +G+N ++ +++G TP+M AA+EG  E+V 
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 113 VLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLK 150
            L+Q+GA + A       TA  LA      ++ D   +
Sbjct: 239 YLIQQGASVEAVDAT-DHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 65.1 bits (157), Expect = 1e-12
 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 14/140 (10%)

Query: 63  ESPLTLA-ACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL------ 115
           ESP+ L     G   +   +     NI +      T L   A     E    L+      
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 116 --QKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEG 170
               GA +N   +  + T L LA       +  +L+K GA+  +      + L +AA   
Sbjct: 60  CIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR 118

Query: 171 HLELVRYLLDSGAQEMQTKH 190
              ++ Y+L+S   +   + 
Sbjct: 119 DFGMMVYMLNSTKLKGDIEE 138

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.5 bits (132), Expect = 2e-09
 Identities = 48/245 (19%), Positives = 74/245 (30%), Gaps = 68/245 (27%)

Query: 7   ESPLTLA-ACGGH-----------VNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIE 53
           ESP+ L     G            VN+       + L   A     + +  LI   A   
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 54  -----EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHE 108
                +VN       +PL LA       L   L++ GA+    N    + L +AA     
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 120

Query: 109 EMVCVLLQKG-------------------AKINAHTEETQ-------------------- 129
            M+  +L                         N   ++                      
Sbjct: 121 GMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK 180

Query: 130 -------ETALTLACCGGFLDVADFLLKNGANIELGAS----TPLMEAAQEGHLELVRYL 178
                   TAL  A     + +  +L+    + +        TP+M AAQEG +E+V YL
Sbjct: 181 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

Query: 179 LDSGA 183
           +  GA
Sbjct: 241 IQQGA 245

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 53.2 bits (126), Expect = 1e-08
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 130 ETALTLAC-CGGFLDVADFLLKNGANI--ELGASTPLMEAAQEGHLELVRYLLDSGAQEM 186
           E+ + L     G   + + + +   NI       T L   A     E    L+   A+E 
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 187 QTKHIDI 193
                D+
Sbjct: 61  IAAGADV 67

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 74.0 bits (180), Expect = 1e-15
 Identities = 52/250 (20%), Positives = 81/250 (32%), Gaps = 78/250 (31%)

Query: 28  SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALL------- 80
           +    A   G  +  L L+ERGA+   +N       + L  A    +VD+          
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGAD---INYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 81  --------------------------LIERGANIEEVNDEGYTPLMEAAREGHEE----- 109
                                     LI +GA++  VN EG TPL  A  E  EE     
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 110 ---------------------MVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
                                     L  G   +    ++  TAL +A   G+ +V   L
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 149 LKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA------QEMQT-------KHID 192
           ++   ++ +      TPL  AA  G  E  R L+++        +  QT         + 
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILG 278

Query: 193 ILEFKKRKQE 202
            LE  ++KQ 
Sbjct: 279 YLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 73.2 bits (178), Expect = 2e-15
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 7/111 (6%)

Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L +   +      S  + L +AA  G+ ++  LLI+   +   VN+      +PL  AA 
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAH 241

Query: 72  GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
            G  +   +L+E   ++E VN  G T    A     E+++  L +   K N
Sbjct: 242 WGKEEACRILVENLCDMEAVNKVGQTAFDVAD----EDILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 70.1 bits (170), Expect = 3e-14
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 55  VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
                 S  + L +AA  G+ ++  LLI+   ++   + +G+TPL  AA  G EE   +L
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFL--LKNGANI 155
           ++    + A  +   +TA  +A      D+  +L  L+   N+
Sbjct: 252 VENLCDMEAVNKV-GQTAFDVAD----EDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 56.3 bits (134), Expect = 1e-09
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 91  VNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF 147
           V  +     + A   G  E V  LL++GA IN    +   TAL  AC    +D+  F
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGL-TALHQACIDDNVDMVKF 91

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.3 bits (108), Expect = 3e-06
 Identities = 8/34 (23%), Positives = 13/34 (38%)

Query: 150 KNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
           +    ++       + A   G  E V  LL+ GA
Sbjct: 31  RKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA 64

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.7 bits (104), Expect = 6e-06
 Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 100 MEAAREGHEEMVCVLLQKGAKINAHTEETQE--------TALTLACCGGFLDVADFLLKN 151
           M  A++   E +   +     +     + ++             AC  G  +    LL+ 
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER 62

Query: 152 GANIELGAS---TPLMEAAQEGHLELVRY 177
           GA+I        T L +A  + ++++V++
Sbjct: 63  GADINYANVDGLTALHQACIDDNVDMVKF 91

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 3e-14
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 12  LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
           L        +   S  SPL  A     + +  LL++ GAN+   N    S  S L  A+ 
Sbjct: 130 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV---NAQMYSGSSALHSASG 186

Query: 72  GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMV 111
            G + L   L+  GA+    N    TPLM A      +++
Sbjct: 187 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 3e-12
 Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 4/166 (2%)

Query: 15  CGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTD-SFESPLTLAACGG 73
            G          ++   LA           L++  A         +    + L +A    
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 74  HVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETAL 133
             +   LL+ERGA+I+ V+ +     +  A E +   +  LL +          +  +AL
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 181

Query: 134 TLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVR 176
             A   G L +   L+++GA+  L      TPLM A     ++++R
Sbjct: 182 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 3e-10
 Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 41/198 (20%)

Query: 27  ESPLTLAACGGHVDLALLLI----ERGANIEEVN-------------------------- 56
           ++PL +A   G++     L+    + G  ++  N                          
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 57  ----MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVND----EGYTPLMEAAREGHE 108
                     ++   LA           L++  A      +    +G T L  A     +
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 123

Query: 109 EMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLME 165
           E V +LL++GA I+A   ++  + L  A     L +   LL++GAN+       S+ L  
Sbjct: 124 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS 183

Query: 166 AAQEGHLELVRYLLDSGA 183
           A+  G L LVR L+ SGA
Sbjct: 184 ASGRGLLPLVRTLVRSGA 201

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 5e-08
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 93  DEGYTPLMEAAREGHEEMVCVLL----QKGAKINAHTEETQETALTLACC 138
           ++G TPL  A  +G+   V  L+    Q G +++ +    ++T L LA  
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVI 49

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 161 TPLMEAAQEGHLELVRYLLDSGAQ 184
           TPL  A  +G+L  V  L++   Q
Sbjct: 5   TPLHIAVVQGNLPAVHRLVNLFQQ 28

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (160), Expect = 2e-13
 Identities = 41/221 (18%), Positives = 73/221 (33%), Gaps = 50/221 (22%)

Query: 27  ESPLTLAACGGHVDLALLLIER-GANIEEVNMPTDSFESPLTLAA--------------- 70
           +S L LA       L + +I +   ++  +N   +  ++PL LA                
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 71  ------------------------CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREG 106
                                     G +  +       + ++  N  G+T L  A+  G
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 107 HEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPL 163
           +  +V +L+  GA +NA       TAL LA      D+   LLK GA++        +P 
Sbjct: 123 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY 182

Query: 164 MEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRKQEES 204
                     + + L     + +Q          + + EES
Sbjct: 183 QLTWGRPSTRIQQQLGQLTLENLQ-------MLPESEDEES 216

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 6e-12
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 2/113 (1%)

Query: 18  HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDL 77
            +     +  + L LA+  G++ +  LL+  GA++        +  + L LA    + DL
Sbjct: 103 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN--AQEPCNGRTALHLAVDLQNPDL 160

Query: 78  ALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQE 130
             LL++ GA++  V  +GY+P           +   L Q   +      E+++
Sbjct: 161 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESED 213

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 5/49 (10%)

Query: 94  EGYTPLMEAAREGH----EEMVCVLLQKGAKINAHTEETQETALTLACC 138
           +G + L  A          E++  +    A +N      Q+T L LA  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVI 48

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.8 bits (154), Expect = 5e-13
 Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 14/138 (10%)

Query: 69  AACGGHVDLALLLIERGANI------EEVNDEGYTPLMEAAR---EGHEEMVCVLLQKGA 119
           A     +   L     G ++         ++   T L  A R        +V  L+Q   
Sbjct: 13  AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 72

Query: 120 KINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVR 176
            ++        TAL   C     +    LL+  A+IE+      TPL  A +  H     
Sbjct: 73  NLD-KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE 131

Query: 177 YLLDSGAQEMQTK-HIDI 193
            L  + +    +  H++ 
Sbjct: 132 LLTQALSGRFNSHVHVEY 149

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (138), Expect = 9e-11
 Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 13/125 (10%)

Query: 10  LTLAACGGHVNMPTDSF------ESPLTLAA---CGGHVDLALLLIERGANIEEVNMPTD 60
           L   A G  +             E+ L LA        + +   L++   N+++      
Sbjct: 23  LQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS 82

Query: 61  SFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA- 119
           +      L      + L    +   A+IE  N+ G TPL  A R  HE    +L Q  + 
Sbjct: 83  TALHYCCLTDNAECLKLL---LRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 139

Query: 120 KINAH 124
           + N+H
Sbjct: 140 RFNSH 144

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 2e-12
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 34/159 (21%)

Query: 29  PLTL---AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERG 85
           PL L   ++  G  DL   +I    +    ++P D   + L  A C GH ++   L++ G
Sbjct: 1   PLALLLDSSLEGEFDLVQRIIYEVDD---PSLPNDEGITALHNAVCAGHTEIVKFLVQFG 57

Query: 86  ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVA 145
            N+   + +G+TPL  AA   + ++   L++ GA + A T    +TA             
Sbjct: 58  VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA------------ 105

Query: 146 DFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQ 184
                              E  +EG+ +  ++L     +
Sbjct: 106 ----------------DKCEEMEEGYTQCSQFLYGVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 6/44 (13%), Positives = 13/44 (29%)

Query: 45  LIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
           L+E GA +  +        +        G+   +  L      +
Sbjct: 86  LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 129

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (144), Expect = 1e-11
 Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 26  FESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERG 85
           + + L  AA  G ++    L++   N+       + F          G+ ++A  L+ RG
Sbjct: 1   WGNELASAAARGDLEQLTSLLQNNVNVNA----QNGFGRTALQVMKLGNPEIARRLLLRG 56

Query: 86  ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVA 145
           AN +  +  G+  + +AAR G  + +  LL+  A +N    E        A  G    V 
Sbjct: 57  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 116

Query: 146 DFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSG 182
             +    +N+        T    A   G  E+V  +  +G
Sbjct: 117 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 1e-05
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 161 TPLMEAAQEGHLELVRYLLDSGA 183
             L  AA  G LE +  LL +  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNV 25

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 6/35 (17%), Positives = 12/35 (34%)

Query: 15  CGGHVNMPTDSFESPLTLAACGGHVDLALLLIERG 49
              +V       ++   LA   G  ++  L+   G
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 2e-10
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 65  PLTLAACGGHVD-LALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKG 118
           PL  A        +  LL  + + + + + +G  PL  +      E+   LL K 
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 1e-09
 Identities = 38/228 (16%), Positives = 70/228 (30%), Gaps = 56/228 (24%)

Query: 9   PLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANI-- 52
           PL  A                   +         PL  +      ++   L+ +  N+  
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 53  ---------------------------------EEVNMPTDSFESPLTLAACGGHVDLAL 79
                                             ++N  T+   + L LA      +++ 
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 80  LLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCG 139
            LIE GA++   +     PL  AA  G  +++ +L   G       ++   T L  A   
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 182

Query: 140 GFLDVADFLL-KNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
           G  D A  L+ K GA  +L  +        A  E   ++ ++ L++  
Sbjct: 183 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 6e-09
 Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 1   MPTDSFESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTD 60
           +    FE    L   G  V +     + PL  AA  G + L  LL   G +   VN    
Sbjct: 113 VGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA--VNWQDK 170

Query: 61  SFESPLTLAACGGHVDLALLLIER-GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA 119
              +PL  A   GH D A+LL+E+ GA  + V+++G      A    +E++    L    
Sbjct: 171 QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 9/122 (7%)

Query: 35  CGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN-IEEVND 93
                +++  LIE GA++   +      + PL  AA  G + L  LL   G + +   + 
Sbjct: 114 GKKWFEVSQFLIENGASVRIKDKFN---QIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 170

Query: 94  EGYTPLMEAAREGHEEMVCVLLQK-GAKINAHTEETQETALTLACCGGFLDVADFLLKNG 152
           +G+TPL  A  EGH +   +L++K GA+ +    +    A  +A       V  F L N 
Sbjct: 171 QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK-GAKAEDVALN---EQVKKFFLNNV 226

Query: 153 AN 154
            +
Sbjct: 227 VD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 6e-07
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 97  TPLMEAAREGHEEMVCVLL-QKGAKINAHTEETQETALTLACCGGFLDVADFLLKNG 152
            PL +A  E     V  LL  K + +    ++     L  +      ++  FLL   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQD-GRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 10/32 (31%), Positives = 13/32 (40%)

Query: 161 TPLMEAAQEGHLELVRYLLDSGAQEMQTKHID 192
            PL +A  E     V+ LL S    +  K  D
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQD 33

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 10/64 (15%), Positives = 16/64 (25%), Gaps = 4/64 (6%)

Query: 131 TALTLACCGGFLDVADFLLK-NGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEM 186
             L  AC          LL    + +         PL  +      E+  +LL       
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 187 QTKH 190
              +
Sbjct: 62  LDDY 65

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.6 bits (132), Expect = 4e-10
 Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 8/153 (5%)

Query: 29  PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
            L  AA  G  D   +L+  GA      +      SPL LAA  GH     +L+  G + 
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWL----GTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 89  EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
           +       TPL  AA EGH  +V VLL+ GA +N   +  + TAL  A      +V + L
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELL 119

Query: 149 LKNGANIELGAS---TPLMEAAQEGHLELVRYL 178
           +K GA++   +    T    +   G+ +L   L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.3 bits (113), Expect = 1e-07
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 97  TPLMEAAREGHEEMVCVLLQKGAKINAH 124
             L+EAAR G ++ V +L+  GA     
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTD 31

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (111), Expect = 3e-07
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 156 ELGASTPLMEAAQEGHLELVRYLLDSGA 183
           +LG    L+EAA+ G  + VR L+ +GA
Sbjct: 1   DLG--KKLLEAARAGQDDEVRILMANGA 26

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 5e-08
 Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 2/124 (1%)

Query: 60  DSFESPLTLAACGGHVDLALLLIERGA--NIEEVNDEGYTPLMEAAREGHEEMVCVLLQK 117
           +     L  AA  G V+    L+E GA  N           +M        E++ +   +
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 118 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRY 177
               +  T                L V           +     P+  A + GH ++ RY
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 178 LLDS 181
           L  +
Sbjct: 121 LRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-05
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 159 ASTPLMEAAQEGHLELVRYLLDSGAQEMQTKH 190
           ++  L  AA  G +E VR LL++GA       
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNS 34

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 7e-05
 Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 4/126 (3%)

Query: 24  DSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIE 83
           +     L  AA  G V+    L+E GAN    N         + + +          L+ 
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAEL----LLL 56

Query: 84  RGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLD 143
            GA     +    T  +  A         V+L +        +      + LA   G  D
Sbjct: 57  HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD 116

Query: 144 VADFLL 149
           VA +L 
Sbjct: 117 VARYLR 122

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 1e-07
 Identities = 29/150 (19%), Positives = 45/150 (30%), Gaps = 34/150 (22%)

Query: 65  PLTLAACGGHVD-LALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQ------- 116
            L+ AA  G V  +  LL     + + +N  G T L           + +L Q       
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 117 ----KGAKINAHTEETQETALTLACCGGFLDVADF-------------------LLKNGA 153
                    +A      +T   L   G  ++V D                     L   +
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES 124

Query: 154 NIELGAS---TPLMEAAQEGHLELVRYLLD 180
           ++    +   TPL  A Q G  +LV  L  
Sbjct: 125 DLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 6e-04
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 159 ASTPLMEAAQEGHLELVRYLLDSG 182
           A   L  AA  G ++ VR LL   
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRE 25

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%)

Query: 95  GYTPLMEAAREGHEEMVCVLLQK-GAKINAHTEE 127
               L  AA  G  + V  LL +     +A    
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRF 35

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.8 bits (96), Expect = 1e-05
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 161 TPLMEAAQEGHLELVRYLLDSGAQEMQTKH 190
              M A + G L+ V+  +  G    +T  
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLE 33

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (84), Expect = 6e-04
 Identities = 5/21 (23%), Positives = 8/21 (38%)

Query: 97  TPLMEAAREGHEEMVCVLLQK 117
              M A + G  + V   + K
Sbjct: 4   KEFMWALKNGDLDEVKDYVAK 24

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.9 bits (78), Expect = 0.003
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 2/116 (1%)

Query: 63  ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
           +     A   G +D     + +G ++    + G  PL  AA  G  E++  LL KGA IN
Sbjct: 3   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62

Query: 123 AHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS--TPLMEAAQEGHLELVR 176
           A  +      L+    G    V   L K       G    T L     +    L++
Sbjct: 63  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALLQ 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	352
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.98
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.87

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-36  Score=264.52  Aligned_cols=182  Identities=30%  Similarity=0.307  Sum_probs=162.8

Q ss_pred             CCCCCccHHHHHHcCCC----------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChH
Q psy5490           2 PTDSFESPLTLAACGGH----------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESP   65 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~----------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~   65 (352)
                      -|++|+||||+||..++                +|..|..|+||||+||..|+.+++++|+++|+++   +.+|..|+||
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i---~~~d~~g~tp   81 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV---LVAERGGHTA   81 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---SCCCTTSCCH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc---cccccccchh
Confidence            38899999999997665                3455789999999999999999999999999995   6677999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCC-----------------------------------------------CCCCcCCCCChH
Q psy5490          66 LTLAACGGHVDLALLLIERGA-----------------------------------------------NIEEVNDEGYTP   98 (352)
Q Consensus        66 Lh~A~~~g~~~~v~~Ll~~g~-----------------------------------------------~~~~~d~~G~t~   98 (352)
                      ||+|+..++.+++++|++.+.                                               +++.+|.+|+||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            999999999999999876432                                               134567889999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHH
Q psy5490          99 LMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELV  175 (352)
Q Consensus        99 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v  175 (352)
                      ||+|+..++.+++++|++++++.+...+..|.||||+|+..|+.+++++|+++|++++.   .|+||||+|+..++.+++
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~  241 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA  241 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred             ccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence            99999999999999999999999876778899999999999999999999999999865   688999999999999999


Q ss_pred             HHHHHcCCCcc
Q psy5490         176 RYLLDSGAQEM  186 (352)
Q Consensus       176 ~~Ll~~ga~~~  186 (352)
                      ++|+++||+..
T Consensus       242 ~~Ll~~Ga~~~  252 (255)
T d1oy3d_         242 RLLRAHGAPEP  252 (255)
T ss_dssp             HHHHHTTCCCC
T ss_pred             HHHHHcCCCCC
Confidence            99999999743

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-34  Score=244.09  Aligned_cols=191  Identities=27%  Similarity=0.374  Sum_probs=172.6

Q ss_pred             CccHHHHHHcCCC--------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHH
Q psy5490           6 FESPLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC   71 (352)
Q Consensus         6 g~t~L~lA~~~~~--------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~   71 (352)
                      +++.|+.+|..|+              ++..|.+|+||||+||..|+.+++++|++.+.+.   ...+..+.+++++++.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~---~~~~~~~~~~~~~~~~   79 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV---NDKDDAGWSPLHIAAS   79 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS---CCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc---cccccccccccccccc
Confidence            4667777777666              4566999999999999999999999999998874   3445778999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHc
Q psy5490          72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN  151 (352)
Q Consensus        72 ~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  151 (352)
                      .++.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|+++|++++. .+..|.|+||+|+..++.+++++|++.
T Consensus        80 ~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~-~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          80 AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCccchhhhhcCCcchhhhhccc
Confidence            9999999999999999999999999999999999999999999999999998 477799999999999999999999999


Q ss_pred             CCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHHh
Q psy5490         152 GANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKRK  200 (352)
Q Consensus       152 g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  200 (352)
                      |.+++.   .|+||||+|+..|+.++|++|+++|++....+..+.+++..++
T Consensus       159 ~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~  210 (223)
T d1uoha_         159 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK  210 (223)
T ss_dssp             TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC
T ss_pred             cceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            998865   6899999999999999999999999999999988888877654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-33  Score=237.85  Aligned_cols=175  Identities=28%  Similarity=0.406  Sum_probs=161.8

Q ss_pred             CCCCCCccHHHHHHcCCCCCC-------------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHH
Q psy5490           1 MPTDSFESPLTLAACGGHVNM-------------PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLT   67 (352)
Q Consensus         1 ~~~~~g~t~L~lA~~~~~~n~-------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh   67 (352)
                      ++|..|+||||+||..|++++             .+..+.++++.|+..|+.+++++|+++|+++   +..|.+|+||||
T Consensus        32 ~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~---~~~d~~g~tpL~  108 (223)
T d1uoha_          32 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV---NAVNQNGCTPLH  108 (223)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHH
T ss_pred             CcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCcee---EeeCCCCCchhh
Confidence            368899999999999887554             3667889999999999999999999999985   667799999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHH
Q psy5490          68 LAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF  147 (352)
Q Consensus        68 ~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~  147 (352)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.+.+++. .+..|+||||+|+..|+.+++++
T Consensus       109 ~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~-~d~~g~TpL~~Aa~~g~~~~v~~  187 (223)
T d1uoha_         109 YAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI-QDTEGNTPLHLACDEERVEEAKL  187 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeee-ccCCCCceeccccccCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998 47789999999999999999999


Q ss_pred             HHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHH
Q psy5490         148 LLKNGANIEL---GASTPLMEAAQEGHLELVRYLLD  180 (352)
Q Consensus       148 Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~  180 (352)
                      |+++|++++.   .|+||||+| ..|+.+++++|++
T Consensus       188 LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         188 LVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             HHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            9999999865   789999998 4799999999985

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-33  Score=245.20  Aligned_cols=180  Identities=23%  Similarity=0.223  Sum_probs=162.5

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChH
Q psy5490          19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTP   98 (352)
Q Consensus        19 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~   98 (352)
                      .++++++|+||||+||+.|+.+++++|+++|+++..++.++..|+||||+|+..|+.++|++|+++|++++.+|.+|+||
T Consensus         2 ~~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (255)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchh
Confidence            35789999999999999999999999999999988888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCc-----------------------------------------------ccccccccCc
Q psy5490          99 LMEAAREGHEEMVCVLLQKGAKI-----------------------------------------------NAHTEETQET  131 (352)
Q Consensus        99 L~~A~~~g~~~~v~~Ll~~g~~~-----------------------------------------------~~~~~~~g~t  131 (352)
                      ||+|+..++.+++++|++.+...                                               +. .+..|.|
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~-~d~~g~T  160 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA-ENYDGHT  160 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTC-CCTTSCC
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccccc-ccccCcc
Confidence            99999999999999998764321                                               11 2346889


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHH
Q psy5490         132 ALTLACCGGFLDVADFLLKNGANIEL----GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKR  199 (352)
Q Consensus       132 ~L~~A~~~g~~~~v~~Ll~~g~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~  199 (352)
                      |||+|+..++.+++++|++++++.+.    .|.||||+|++.|+.++|++|+++|++.+..+..+.+++..+
T Consensus       161 pLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A  232 (255)
T d1oy3d_         161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA  232 (255)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            99999999999999999999988753    688999999999999999999999999998888777776654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.6e-32  Score=234.14  Aligned_cols=177  Identities=24%  Similarity=0.222  Sum_probs=159.8

Q ss_pred             CCccHHHHHHcCCC-----------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHH
Q psy5490           5 SFESPLTLAACGGH-----------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLT   67 (352)
Q Consensus         5 ~g~t~L~lA~~~~~-----------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh   67 (352)
                      +|+|+||+|+..|+                 +|..|.+|+||||+||..|+.+++++|+++|+++   +..|..|+||||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~---~~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP---ELRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS---CCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccc---cccccccccccc
Confidence            69999999996665                 4556889999999999999999999999999995   667799999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCC------CcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCC
Q psy5490          68 LAACGGHVDLALLLIERGANIE------EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGF  141 (352)
Q Consensus        68 ~A~~~g~~~~v~~Ll~~g~~~~------~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~  141 (352)
                      +|+..++.+++++|++.+.+..      .....|.|+||+|+..++.+++++|++.|+.++...+..|.||||+|++.|+
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~  157 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN  157 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccccc
Confidence            9999999999999999876533      3345689999999999999999999999999998777789999999999999


Q ss_pred             HHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490         142 LDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQ  184 (352)
Q Consensus       142 ~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~  184 (352)
                      .+++++|+++|++++.   +|+||||+|+..++.+++++|++.+.+
T Consensus       158 ~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         158 PDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            9999999999999865   789999999999999999999988764

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=2.4e-30  Score=228.48  Aligned_cols=173  Identities=23%  Similarity=0.281  Sum_probs=147.4

Q ss_pred             CCCccHHHHHHcCCC---------------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCC
Q psy5490           4 DSFESPLTLAACGGH---------------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSF   62 (352)
Q Consensus         4 ~~g~t~L~lA~~~~~---------------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g   62 (352)
                      ++|+||||+||.+|+                     +|..|.+|+||||+|+..|+.++|++|+++|+++   +.++.+|
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~---n~~~~~g  107 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP---TIYNKSE  107 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccc---ccccccc
Confidence            569999999997664                     4566899999999999999999999999999995   6677899


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCC---C--------------------------------------------CCCcCCCC
Q psy5490          63 ESPLTLAACGGHVDLALLLIERGA---N--------------------------------------------IEEVNDEG   95 (352)
Q Consensus        63 ~t~Lh~A~~~g~~~~v~~Ll~~g~---~--------------------------------------------~~~~d~~G   95 (352)
                      +|+|++|+..++.++++++...+.   .                                            .+..+..|
T Consensus       108 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  187 (277)
T d2fo1e1         108 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  187 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             cccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCC
Confidence            999999999999988887765310   1                                            12344678


Q ss_pred             ChHHHHHHHcCcHHHHHHHH-hcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCC
Q psy5490          96 YTPLMEAAREGHEEMVCVLL-QKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGH  171 (352)
Q Consensus        96 ~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~  171 (352)
                      +|+||+++..++.+++++++ ..+.+++. .+..|+||||+|+..|+.+++++|+++|++++.   .|+||||+|++.|+
T Consensus       188 ~t~L~~~~~~~~~~~~~~~l~~~~~~~~~-~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         188 RTALHYAAQVSNMPIVKYLVGEKGSNKDK-QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH  266 (277)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSCCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred             CCccccccccccccccccccccccccccc-cCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCC
Confidence            99999999999999998755 55777776 577899999999999999999999999999854   78899999999999


Q ss_pred             HHHHHHHHH
Q psy5490         172 LELVRYLLD  180 (352)
Q Consensus       172 ~~~v~~Ll~  180 (352)
                      .++|++|++
T Consensus       267 ~~iv~lL~~  275 (277)
T d2fo1e1         267 HNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999999985

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.7e-30  Score=218.60  Aligned_cols=196  Identities=20%  Similarity=0.252  Sum_probs=171.7

Q ss_pred             ccHHHHHHcCCC--------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHc
Q psy5490           7 ESPLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACG   72 (352)
Q Consensus         7 ~t~L~lA~~~~~--------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~   72 (352)
                      ++|||.||..|+              ++.+|.+|+||||+|+..|+.+++++|+++|++++..+..+..|.+++|+++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            479999997665              556699999999999999999999999999999887778889999999999999


Q ss_pred             CCHHHHHHHHHcCCCC--CCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHH
Q psy5490          73 GHVDLALLLIERGANI--EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLK  150 (352)
Q Consensus        73 g~~~~v~~Ll~~g~~~--~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  150 (352)
                      +..++++.++..+...  ...+..+.++|+.++..++.+++++|++.|.+.+. .+..|+|+||+|+..|+.+++++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccc-cCCCCCCccchhhhcccccccccccc
Confidence            9999999999887754  45677899999999999999999999999999987 47779999999999999999999999


Q ss_pred             cCC-CC---CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccccccHHHHHHHhhHH
Q psy5490         151 NGA-NI---ELGASTPLMEAAQEGHLELVRYLLD-SGAQEMQTKHIDILEFKKRKQEE  203 (352)
Q Consensus       151 ~g~-~~---~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~  203 (352)
                      .+. ++   |..|+||||+|+..|+.++|++|++ +|++....+..+.+++....+.+
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~~  217 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ  217 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCHH
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhHH
Confidence            874 44   4478999999999999999999996 69999988877766665554433

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-29  Score=205.42  Aligned_cols=150  Identities=27%  Similarity=0.364  Sum_probs=140.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCc
Q psy5490          28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGH  107 (352)
Q Consensus        28 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~  107 (352)
                      ++||+||..|++++|++|+++|+|+   +.+|.+|+||||+|+ .|+.+++++|+++|++++.++..|.++|+.++..++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~---n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV---NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT---TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc---CccCCcccccccccc-cccccccccccccccccccccccCcccccccccccc
Confidence            8999999999999999999999995   667799999999886 799999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCC-CC---CCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy5490         108 EEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGA-NI---ELGASTPLMEAAQEGHLELVRYLLDSG  182 (352)
Q Consensus       108 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g  182 (352)
                      .+++++|++.+.+++. .+..|.++||+|+..++.+++++|+++++ +.   |..|+||||+|++.++.++|++|+++|
T Consensus        79 ~~~~~~l~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          79 LDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccc-cccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999988 57789999999999999999999999987 44   446899999999999999999999987

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-29  Score=222.95  Aligned_cols=183  Identities=25%  Similarity=0.262  Sum_probs=149.9

Q ss_pred             CccHHHHHHcCCC-------------CCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCc----------------
Q psy5490           6 FESPLTLAACGGH-------------VNMPT-DSFESPLTLAACGGHVDLALLLIERGANIEEV----------------   55 (352)
Q Consensus         6 g~t~L~lA~~~~~-------------~n~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----------------   55 (352)
                      +.|+||.|++.|+             +|..+ ..|+||||+|+..|+.+++++|++.|.+....                
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCC
Confidence            5677888875544             45444 45788888888888888888888877654200                


Q ss_pred             ---------------------------------------------------------CCCCCCCChHHHHHHHcCCHHHH
Q psy5490          56 ---------------------------------------------------------NMPTDSFESPLTLAACGGHVDLA   78 (352)
Q Consensus        56 ---------------------------------------------------------n~~~~~g~t~Lh~A~~~g~~~~v   78 (352)
                                                                               ...+..|.||||+|++.|+.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  164 (285)
T d1wdya_          85 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  164 (285)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred             ccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHH
Confidence                                                                     02234578999999999999999


Q ss_pred             HHHHHc-CCCCCCcCCCCChHHHHHHHc----CcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHH-cC
Q psy5490          79 LLLIER-GANIEEVNDEGYTPLMEAARE----GHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLK-NG  152 (352)
Q Consensus        79 ~~Ll~~-g~~~~~~d~~G~t~L~~A~~~----g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g  152 (352)
                      ++|+++ |++++..+..|.++++.+...    +..+++++|+++|++++. .+..|.||||+|+..|+.+++++|++ .|
T Consensus       165 ~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~-~~~~g~t~L~~a~~~~~~~~v~~lL~~~g  243 (285)
T d1wdya_         165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKKHLGLVQRLLEQEH  243 (285)
T ss_dssp             HHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC-CCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred             HHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCc-cCCCCCCccchhhhcCcHHHHHHHHHcCC
Confidence            999974 889999999999888776553    456799999999999997 47779999999999999999999998 58


Q ss_pred             CCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccc
Q psy5490         153 ANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTK  189 (352)
Q Consensus       153 ~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  189 (352)
                      ++++.   +|.||||+|+++|+.|+|++|+++||+++..|
T Consensus       244 ~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         244 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            88764   78999999999999999999999999988765

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=3.2e-29  Score=223.16  Aligned_cols=178  Identities=30%  Similarity=0.417  Sum_probs=114.2

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChH
Q psy5490          19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTP   98 (352)
Q Consensus        19 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~   98 (352)
                      +|..|.+|+||||+|+..|+.++|++|+++|.+.   ...+..+.+||++|+..++.+++++|+++|...+..|..|.++
T Consensus        66 vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~---~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  142 (291)
T d1s70b_          66 INYANVDGLTALHQACIDDNVDMVKFLVENGANI---NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP  142 (291)
T ss_dssp             TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCccCCCCCcHHHHHHhcCCceeeeeeccccccc---ccccccccccccccccccccchhhcccccCcccccccccCccc
Confidence            4444555555555555555555555555555442   2233444555555555555555555555555555555555555


Q ss_pred             HHHHHHcCcHHHHHHHHhc-CCCc-------------------------ccccccccCcHHHHHHHcCCHHHHHHHHHcC
Q psy5490          99 LMEAAREGHEEMVCVLLQK-GAKI-------------------------NAHTEETQETALTLACCGGFLDVADFLLKNG  152 (352)
Q Consensus        99 L~~A~~~g~~~~v~~Ll~~-g~~~-------------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  152 (352)
                      +++|+..+..++++.|+.. +.++                         ....+..|.|+||+|+..|+.+++++|+++|
T Consensus       143 ~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g  222 (291)
T d1s70b_         143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR  222 (291)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             cccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccce
Confidence            5555555554444444432 1110                         1112346789999999999999999999999


Q ss_pred             CCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHH
Q psy5490         153 ANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKR  199 (352)
Q Consensus       153 ~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~  199 (352)
                      +++|.   .|+||||+|+..|+.++|++|+++|++++..+..+.+++..+
T Consensus       223 ~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            99865   689999999999999999999999999988877666555443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.9e-29  Score=201.06  Aligned_cols=149  Identities=28%  Similarity=0.346  Sum_probs=136.1

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHc
Q psy5490          27 ESPLTLAACGGHVDLALLLIER-GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE  105 (352)
Q Consensus        27 ~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~  105 (352)
                      .+.|+.||..|++++|++||+. +++   ++..|..|+||||+|+ .|+.++|++|++++.+++..+..|.++|++++..
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~---~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~   78 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVH---PDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCC---TTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCC---CCccCCCCCccccccc-cccccccccccccccccccccccccccccccccc
Confidence            3569999999999999999986 566   4667899999999986 5899999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHc
Q psy5490         106 GHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDS  181 (352)
Q Consensus       106 g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~  181 (352)
                      ++.+++++++++|++++. .+..|+||||+|+..|+.+++++|+ .|++++.   +|+||||+|++.|+.+++++|++|
T Consensus        79 ~~~~~~~~~l~~~~~~n~-~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          79 GFLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccccc-ccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999999999998 5777999999999999999999888 6777654   789999999999999999999975

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=4.2e-29  Score=220.41  Aligned_cols=192  Identities=26%  Similarity=0.313  Sum_probs=156.6

Q ss_pred             ccHHHHHHcC------------CCCCCCC-CCCChHHHHHHHcCCHHHHHHH--------HHcCCCCCCcCCCCCCCChH
Q psy5490           7 ESPLTLAACG------------GHVNMPT-DSFESPLTLAACGGHVDLALLL--------IERGANIEEVNMPTDSFESP   65 (352)
Q Consensus         7 ~t~L~lA~~~------------~~~n~~d-~~g~t~L~~A~~~g~~~~v~~L--------l~~g~~~~~~n~~~~~g~t~   65 (352)
                      +||||++++.            .++|..| .+|+||||+||..|+.++|++|        ++.|+|+   |.+|.+|+||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv---n~~d~~G~Tp   77 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV---NAMDCDENTP   77 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT---TCCCTTSCCH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc---cccCCCCCee
Confidence            4778877642            2345556 4699999999999999988776        5678984   6678999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCC---Cccc-------------------
Q psy5490          66 LTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA---KINA-------------------  123 (352)
Q Consensus        66 Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~-------------------  123 (352)
                      ||+|+..|+.++|++|+++|++++.+|.+|.|+|++|+..++.++++++...+.   .++.                   
T Consensus        78 Lh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (277)
T d2fo1e1          78 LMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD  157 (277)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT
T ss_pred             eccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccc
Confidence            999999999999999999999999999999999999999999998888875421   1000                   


Q ss_pred             ------------------------ccccccCcHHHHHHHcCCHHHHHHHHH-cCCCC---CCCCCCHHHHHHHcCCHHHH
Q psy5490         124 ------------------------HTEETQETALTLACCGGFLDVADFLLK-NGANI---ELGASTPLMEAAQEGHLELV  175 (352)
Q Consensus       124 ------------------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~---~~~g~t~L~~A~~~~~~~~v  175 (352)
                                              ..+..|.|+||+++..++.+++++++. .+.+.   |..|+||||+|++.|+.++|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv  237 (277)
T d2fo1e1         158 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV  237 (277)
T ss_dssp             HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             ccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHH
Confidence                                    012257799999999999999987664 56655   44688999999999999999


Q ss_pred             HHHHHcCCCccccccccHHHHHHHhh
Q psy5490         176 RYLLDSGAQEMQTKHIDILEFKKRKQ  201 (352)
Q Consensus       176 ~~Ll~~ga~~~~~~~~~~~~~~~~~~  201 (352)
                      ++|+++|++.+..+..+.++...+.+
T Consensus       238 ~~Ll~~gadin~~d~~G~T~L~~A~~  263 (277)
T d2fo1e1         238 MYLIQQGASVEAVDATDHTARQLAQA  263 (277)
T ss_dssp             HHHHHTTCCSSCCCSSSCCHHHHHHH
T ss_pred             HHHHHCcCCCCCcCCCCCCHHHHHHH
Confidence            99999999999888887777665443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.4e-28  Score=195.90  Aligned_cols=148  Identities=32%  Similarity=0.380  Sum_probs=138.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHc
Q psy5490          26 FESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE  105 (352)
Q Consensus        26 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~  105 (352)
                      ..||||.||+.|+.++|++||++|+++   + .|..|+||||+|+..++.+++++++.........+..+.++++.++..
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~---~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPF---T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC---C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCc---c-cccCCCcccccccccccccccccccccccccccccccccccccccccc
Confidence            459999999999999999999999984   3 578999999999999999999999999888888888999999999999


Q ss_pred             CcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHH
Q psy5490         106 GHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYL  178 (352)
Q Consensus       106 g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~L  178 (352)
                      .+.+++++|+.+|++.+. .+..|.||||+|+..|+.+++++|+++|++++.   .|.||||+|+.+|+.|++++|
T Consensus        78 ~~~~~~~~l~~~~~~~~~-~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          78 GHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccceeeecccccCCcccc-ccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            999999999999999998 477899999999999999999999999999854   789999999999999999987

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.5e-28  Score=209.67  Aligned_cols=178  Identities=24%  Similarity=0.263  Sum_probs=158.6

Q ss_pred             CCCCCccHHHHHHcCCC-------------CC---CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChH
Q psy5490           2 PTDSFESPLTLAACGGH-------------VN---MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESP   65 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~-------------~n---~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~   65 (352)
                      +|.+|+||||+|+..|+             ++   ..+..|.+++|+|+..+..++++.++..+..... ...+..+.++
T Consensus        30 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  108 (229)
T d1ixva_          30 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTC  108 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCT-TCCCTTSCCH
T ss_pred             cCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            68899999999997665             33   3477899999999999999999999999887543 4466788999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcC-CCcccccccccCcHHHHHHHcCCHHH
Q psy5490          66 LTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKG-AKINAHTEETQETALTLACCGGFLDV  144 (352)
Q Consensus        66 Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~g~~~~  144 (352)
                      |+.++..++.+++++|++.|.+.+..|..|+|+||+|+..|+.+++++|++.+ .+++. .+..|+||||+|+..|+.++
T Consensus       109 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~-~d~~g~TpLh~A~~~~~~~~  187 (229)
T d1ixva_         109 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW-QDKQGWTPLFHALAEGHGDA  187 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCC-CCTTSCCHHHHHHHTTCHHH
T ss_pred             cccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccc-cccccCCchhhhcccccHHH
Confidence            99999999999999999999999999999999999999999999999999997 56676 57789999999999999999


Q ss_pred             HHHHHH-cCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490         145 ADFLLK-NGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQ  184 (352)
Q Consensus       145 v~~Ll~-~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~  184 (352)
                      +++|++ +|++++.   .|+||||+|+   +.+++++|+++|+|
T Consensus       188 v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         188 AVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             HHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            999996 5998765   7889999998   45899999999997

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.1e-29  Score=213.43  Aligned_cols=172  Identities=26%  Similarity=0.276  Sum_probs=147.7

Q ss_pred             CCChHHHHHHHcCCH----HHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHH
Q psy5490          25 SFESPLTLAACGGHV----DLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLM  100 (352)
Q Consensus        25 ~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~  100 (352)
                      +|+||||+|+..|+.    +++++|...|++   +|.+|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~---in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF---LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC---CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC---cccCCCCCCccccccccccccccccccccccccccccccccccccc
Confidence            699999999999996    455566677777   5778899999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCcccc-----cccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC----CCCCHHHHHHHcCC
Q psy5490         101 EAAREGHEEMVCVLLQKGAKINAH-----TEETQETALTLACCGGFLDVADFLLKNGANIEL----GASTPLMEAAQEGH  171 (352)
Q Consensus       101 ~A~~~g~~~~v~~Ll~~g~~~~~~-----~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~g~t~L~~A~~~~~  171 (352)
                      +++..++.+++++|++.+......     ....|.|+||+|+..++.+++++|++.|+.++.    +|+||||+|++.|+
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~  157 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN  157 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccccc
Confidence            999999999999999987654322     234578999999999999999999999988753    68999999999999


Q ss_pred             HHHHHHHHHcCCCccccccccHHHHHHH
Q psy5490         172 LELVRYLLDSGAQEMQTKHIDILEFKKR  199 (352)
Q Consensus       172 ~~~v~~Ll~~ga~~~~~~~~~~~~~~~~  199 (352)
                      .+++++|+++|++.+..+..+.+++...
T Consensus       158 ~~~v~~Ll~~gad~~~~~~~G~tpl~~A  185 (221)
T d1iknd_         158 PDLVSLLLKCGADVNRVTYQGYSPYQLT  185 (221)
T ss_dssp             HHHHHHHHTTTCCSCCCCTTCCCGGGGC
T ss_pred             HHHHHHHHhcCCcccccCCCCCCHHHHH
Confidence            9999999999999998887777665543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=2.2e-28  Score=207.00  Aligned_cols=164  Identities=31%  Similarity=0.329  Sum_probs=140.3

Q ss_pred             HHHHcCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHc-----------------
Q psy5490          11 TLAACGGHVNM-PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACG-----------------   72 (352)
Q Consensus        11 ~lA~~~~~~n~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~-----------------   72 (352)
                      .|...|.|+|. .|.+|+||||+||..|+.+++++|++.|+++   +.++..+.++++.++..                 
T Consensus         7 ~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~---n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (209)
T d1ot8a_           7 DLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA---NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNL   83 (209)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCT
T ss_pred             HHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc---cccccccccccccccccccccccccccccccccc
Confidence            34456777876 4888999999999999999999999999885   44445556666655544                 


Q ss_pred             -----------------CCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHH
Q psy5490          73 -----------------GHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTL  135 (352)
Q Consensus        73 -----------------g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~  135 (352)
                                       ....+.++|+..+++++.++..|+|+|++++..+..+++++|++.+.+++. .+..|.||||+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~-~d~~g~TpL~~  162 (209)
T d1ot8a_          84 NARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA-QDDKDETPLFL  162 (209)
T ss_dssp             TCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHH
T ss_pred             ccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccc-cccccccccch
Confidence                             355677788888999999999999999999999999999999999999998 46779999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHH
Q psy5490         136 ACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYL  178 (352)
Q Consensus       136 A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~L  178 (352)
                      |+..|+.+++++|+++|++++.   .|+||||+|+++|+.++|++|
T Consensus       163 A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         163 AAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999855   688999999999999999987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=3.8e-28  Score=216.15  Aligned_cols=172  Identities=25%  Similarity=0.266  Sum_probs=148.9

Q ss_pred             CCCCCccHHHHHHcCCCCC-------------CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           2 PTDSFESPLTLAACGGHVN-------------MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~~n-------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      +|.+|+||||+|+.+|+.+             ..+..+.+||++|+..++.+++++|+++|+..   +..+..+.+++++
T Consensus        69 ~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~  145 (291)
T d1s70b_          69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV---GAVNSEGDTPLDI  145 (291)
T ss_dssp             BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHH
T ss_pred             cCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhcccccCccc---ccccccCcccccc
Confidence            5889999999999877754             34778899999999999999999999999884   4566889999999


Q ss_pred             HHHcCCHHHHHHHHHc-CC--------------------------CCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCc
Q psy5490          69 AACGGHVDLALLLIER-GA--------------------------NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI  121 (352)
Q Consensus        69 A~~~g~~~~v~~Ll~~-g~--------------------------~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~  121 (352)
                      |+..+..++++.|+.. +.                          +....+..|.|+||+|+..|+.+++++|+++|+++
T Consensus       146 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di  225 (291)
T d1s70b_         146 AEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV  225 (291)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT
T ss_pred             ccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecc
Confidence            9999999988888753 22                          23456778999999999999999999999999999


Q ss_pred             ccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHc
Q psy5490         122 NAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDS  181 (352)
Q Consensus       122 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~  181 (352)
                      +. .+..|+||||+|+..|+.++|++|+++|++++.   .|+||||+|++    +++++|.+.
T Consensus       226 n~-~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         226 NI-KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEEL  283 (291)
T ss_dssp             TC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGGHHHHHH
T ss_pred             cc-cccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHHHHHHHH
Confidence            98 477799999999999999999999999999865   68899999975    577777654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.7e-27  Score=216.99  Aligned_cols=192  Identities=31%  Similarity=0.416  Sum_probs=119.3

Q ss_pred             CCCCccHHHHHH-------------cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHH
Q psy5490           3 TDSFESPLTLAA-------------CGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLA   69 (352)
Q Consensus         3 ~~~g~t~L~lA~-------------~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A   69 (352)
                      +.+|.++||+|+             .|++++..+..|.||||+++...+.+++..|+..+...   ...+..|.|+||+|
T Consensus       162 ~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~t~l~~a  238 (408)
T d1n11a_         162 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA---NAESVQGVTPLHLA  238 (408)
T ss_dssp             CSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHH
T ss_pred             CCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccc---cccCCCCCCHHHHH
Confidence            456666776665             45666666666666666666666666666666655542   33345556666666


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHH
Q psy5490          70 ACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLL  149 (352)
Q Consensus        70 ~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  149 (352)
                      +..++.+++++++..+..++..+..|.|||+.|+..++.+++++|+++|++++. .+..+.|+||+++..++.+++++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~-~~~~~~t~L~~~~~~~~~~~~~~ll  317 (408)
T d1n11a_         239 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA-TTRMGYTPLHVASHYGNIKLVKFLL  317 (408)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCSSCCCHHHHHHHSSCSHHHHHHH
T ss_pred             HHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcccc-ccccccccchhhcccCcceeeeeec
Confidence            666666666666666666666666666666666666666666666666666665 3444566666666666666666666


Q ss_pred             HcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHH
Q psy5490         150 KNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKK  198 (352)
Q Consensus       150 ~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~  198 (352)
                      +.|+++|.   .|+||||+|+++|+.++|++|+++||+.+..+..+.++...
T Consensus       318 ~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~  369 (408)
T d1n11a_         318 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI  369 (408)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred             cccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            66665543   45666666666666666666666666666655555444433

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=6.6e-30  Score=233.94  Aligned_cols=177  Identities=21%  Similarity=0.085  Sum_probs=136.6

Q ss_pred             CCCCccHHHHHHcCCC----------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHH
Q psy5490           3 TDSFESPLTLAACGGH----------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPL   66 (352)
Q Consensus         3 ~~~g~t~L~lA~~~~~----------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~L   66 (352)
                      +..|.|+||+||.+|+                +|.+|.+|+||||+||+.|+.++|++|+++|++++..+ .+.+|+|||
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~-~~~~g~t~L  165 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM-IQAENYHAF  165 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH-HSHHHHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc-cccCCCChh
Confidence            5678899999998765                35567788999999999999999999999999854321 224588999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCC---CcCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccc------------------
Q psy5490          67 TLAACGGHVDLALLLIERGANIE---EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHT------------------  125 (352)
Q Consensus        67 h~A~~~g~~~~v~~Ll~~g~~~~---~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~------------------  125 (352)
                      |+|+..|+.++|++|++.|++..   ..+.+|.|++|.|+.+|+.++|++|+++|++++...                  
T Consensus       166 ~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~  245 (346)
T d2ajaa1         166 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARH  245 (346)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHh
Confidence            99999999999999999887653   334557788888889999999999998876543210                  


Q ss_pred             --------------c----------------cccCcHHHHHHHcCCHHHHHHHHHcCCCC--------CCCCCCHHHHHH
Q psy5490         126 --------------E----------------ETQETALTLACCGGFLDVADFLLKNGANI--------ELGASTPLMEAA  167 (352)
Q Consensus       126 --------------~----------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--------~~~g~t~L~~A~  167 (352)
                                    .                ..+.++|+.|+..|+.+++++|++.+...        +.+|+||||+|+
T Consensus       246 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~  325 (346)
T d2ajaa1         246 VNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL  325 (346)
T ss_dssp             HHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHH
T ss_pred             hccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHH
Confidence                          0                01236778888888999999999877532        125789999999


Q ss_pred             HcCCHHHHHHHHH
Q psy5490         168 QEGHLELVRYLLD  180 (352)
Q Consensus       168 ~~~~~~~v~~Ll~  180 (352)
                      +.|+.++|++|++
T Consensus       326 ~~Gn~e~v~lLL~  338 (346)
T d2ajaa1         326 RLGNQGACALLLS  338 (346)
T ss_dssp             HHTCTTHHHHHTT
T ss_pred             HcCcHHHHHHHhC
Confidence            9999999999985

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-25  Score=209.37  Aligned_cols=175  Identities=34%  Similarity=0.430  Sum_probs=159.5

Q ss_pred             CCCCCccHHHHHHcCCC-------------CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHH
Q psy5490           2 PTDSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL   68 (352)
Q Consensus         2 ~~~~g~t~L~lA~~~~~-------------~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~   68 (352)
                      .+..|.|+||+++....             ....+..+.||||+|+..++.++++++++.+.+.   +..+..|.|||+.
T Consensus       194 ~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~l~~  270 (408)
T d1n11a_         194 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG---NLGNKSGLTPLHL  270 (408)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT---TCCCTTCCCHHHH
T ss_pred             cCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhcccccc---ccccCCCCChhhh
Confidence            46789999999996443             3445778999999999999999999999998874   5566889999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHH
Q psy5490          69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL  148 (352)
Q Consensus        69 A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  148 (352)
                      |+..++.+++++|+++|++++..+..+.||||+++..++.+++++|++.|++++.+ +..|.||||+|++.|+.++|++|
T Consensus       271 a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~-d~~G~T~Lh~A~~~g~~~iv~~L  349 (408)
T d1n11a_         271 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHTDIVTLL  349 (408)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecccccccccc-CCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999984 67899999999999999999999


Q ss_pred             HHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHH
Q psy5490         149 LKNGANIEL---GASTPLMEAAQEGHLELVRYLLD  180 (352)
Q Consensus       149 l~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~  180 (352)
                      +++|++++.   +|+||||+|++.|+.++|++|..
T Consensus       350 l~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         350 LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             HHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999865   68999999999999999997743

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.6e-27  Score=183.62  Aligned_cols=120  Identities=30%  Similarity=0.369  Sum_probs=85.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-hHHHHHHH
Q psy5490          26 FESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY-TPLMEAAR  104 (352)
Q Consensus        26 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~-t~L~~A~~  104 (352)
                      +.++||+|+..|++++|++|+++|+++   +.++..|+|+||+|+ .|+.++|++|+++|++++.++..|. ||||+|++
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~---n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP---NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT---TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc---ccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            456777777777777777777777774   455567777777553 5777777777777777777776654 47777777


Q ss_pred             cCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHH
Q psy5490         105 EGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLK  150 (352)
Q Consensus       105 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  150 (352)
                      .|+.+++++|+++|++++. .+..|+||||+|+..|+.+++++|+.
T Consensus        79 ~g~~~~v~~Ll~~ga~~~~-~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGARLDV-RDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccc-ccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            7777777777777777776 35567777777777777777776653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-25  Score=188.28  Aligned_cols=193  Identities=26%  Similarity=0.318  Sum_probs=151.6

Q ss_pred             CCCccHHHHHHcCC-----------------CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHH
Q psy5490           4 DSFESPLTLAACGG-----------------HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPL   66 (352)
Q Consensus         4 ~~g~t~L~lA~~~~-----------------~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~L   66 (352)
                      ++|+||||+||..|                 ++|..|.+|+||||+|+..|+.+++++|+++|++.   +.....|.+++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~---~~~~~~~~~~~   77 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP---MALDRHGQTAA   77 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccc---ccccccccccc
Confidence            46888888888544                 45566778888888888888888888888888874   44557778888


Q ss_pred             HHHHHcCCHHHHHHHHHcCC----CCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCH
Q psy5490          67 TLAACGGHVDLALLLIERGA----NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFL  142 (352)
Q Consensus        67 h~A~~~g~~~~v~~Ll~~g~----~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~  142 (352)
                      +.|...++.++++.+.....    ..+.....+.++|+.+.........+.|.....+........+.++|++|+..+..
T Consensus        78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_          78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhh
Confidence            88888888888777766432    23444556677888888888888888888877776666677788999999999999


Q ss_pred             HHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHHHH
Q psy5490         143 DVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFKKR  199 (352)
Q Consensus       143 ~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~  199 (352)
                      +++++++++|...+.   .|.||||+|+..|+.+++++|+++|++++..+..+.+++..+
T Consensus       158 ~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A  217 (228)
T d1k1aa_         158 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA  217 (228)
T ss_dssp             HHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTC
T ss_pred             hhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            999999999987644   688999999999999999999999999888777666554443

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.6e-27  Score=183.01  Aligned_cols=118  Identities=30%  Similarity=0.364  Sum_probs=109.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCC
Q psy5490          62 FESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGF  141 (352)
Q Consensus        62 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~  141 (352)
                      +.++||+|+..|++++|++|+++|++++.+|.+|+|+||+|+ .|+.+++++|+++|++++......+.+|||+|++.|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            568999999999999999999999999999999999999775 7999999999999999998655555689999999999


Q ss_pred             HHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHH
Q psy5490         142 LDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLD  180 (352)
Q Consensus       142 ~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~  180 (352)
                      .+++++|+++|++++.   .|+||||+|+++|+.|++++|+.
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999865   78999999999999999999974

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.3e-27  Score=182.51  Aligned_cols=121  Identities=26%  Similarity=0.382  Sum_probs=102.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCc
Q psy5490          28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGH  107 (352)
Q Consensus        28 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~  107 (352)
                      ++|+.|+..|++++|++|+++|+|+   +.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~---n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC---CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc---cccccccccccccccccccccccccccccccccccccccCcccccccchhhH
Confidence            5788999999999999999999884   6677889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccccCcHHHHH--HHcCCHHHHHHHHHc
Q psy5490         108 EEMVCVLLQKGAKINAHTEETQETALTLA--CCGGFLDVADFLLKN  151 (352)
Q Consensus       108 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~  151 (352)
                      .+++++|+++|++++......+.|+++++  +..|+.+++++|+..
T Consensus        80 ~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          80 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999999999999876555677776665  456777888888764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=181.85  Aligned_cols=130  Identities=28%  Similarity=0.337  Sum_probs=119.2

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Q psy5490          16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEG   95 (352)
Q Consensus        16 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G   95 (352)
                      +.++|..|..|+||||+|+ .|+.+++++|++++.++   +..+..|.++|++++..++.+++++++++|++++.+|.+|
T Consensus        26 ~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~  101 (156)
T d1bd8a_          26 LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP---NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTG  101 (156)
T ss_dssp             CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred             CCCCCccCCCCCccccccc-ccccccccccccccccc---cccccccccccccccccccccccccccccccccccccCCC
Confidence            3457778999999999986 58999999999999985   5566889999999999999999999999999999999999


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHc
Q psy5490          96 YTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN  151 (352)
Q Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  151 (352)
                      +||||+|++.|+.+++++|+ .|++++. .+..|+||||+|+..|+.+++++|++|
T Consensus       102 ~t~L~~A~~~~~~~i~~~L~-~~~~~~~-~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         102 ALPIHLAVQEGHTAVVSFLA-AESDLHR-RDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHH-TTSCTTC-CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             Ceeecccccccccccccccc-ccccccc-cCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999999999999888 6889987 577899999999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-25  Score=180.02  Aligned_cols=140  Identities=29%  Similarity=0.316  Sum_probs=128.8

Q ss_pred             cHHHHHHc-------------CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCC
Q psy5490           8 SPLTLAAC-------------GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGH   74 (352)
Q Consensus         8 t~L~lA~~-------------~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~   74 (352)
                      ++||+||.             |.++|..|.+|+||||+|+ .|+.+++++|+++|+++   +..+..|.++|+.++..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~---~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP---DLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccccccccccc---ccccccCcccccccccccc
Confidence            78999995             5567788999999999886 79999999999999995   5667889999999999999


Q ss_pred             HHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCC-CcccccccccCcHHHHHHHcCCHHHHHHHHHcC
Q psy5490          75 VDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA-KINAHTEETQETALTLACCGGFLDVADFLLKNG  152 (352)
Q Consensus        75 ~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  152 (352)
                      .+++++|++.+.+++..|..|.++||+|+..++.+++++|+++++ +++. .+..|.||||+|++.|+.+++++|+++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH-RNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-cCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999987 6666 5778999999999999999999999987

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.8e-27  Score=183.41  Aligned_cols=107  Identities=28%  Similarity=0.383  Sum_probs=95.5

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcC
Q psy5490          27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREG  106 (352)
Q Consensus        27 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g  106 (352)
                      +|||++|++.|++++|++|+++|+++   +..+..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~---n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC---CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc---ccccccccccccccccccccccccccccccceeeecccccccchhhhhhcC
Confidence            48999999999999999999999985   556788999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCcccccccccCcHHHHHH
Q psy5490         107 HEEMVCVLLQKGAKINAHTEETQETALTLAC  137 (352)
Q Consensus       107 ~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~  137 (352)
                      +.+++++|+++|++++. .+..|.||||+|.
T Consensus        80 ~~~~v~~Ll~~Gad~~~-~d~~G~t~l~~a~  109 (118)
T d1myoa_          80 HVSCVKLLLSKGADKTV-KGPDGLTALEATD  109 (118)
T ss_dssp             CCHHHHHHHTTCCCSSS-SSSSTCCCCCTCS
T ss_pred             chhhhhhhhccccccee-eCCCCCCHHHHHh
Confidence            99999999999999987 4777889988873

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-25  Score=176.22  Aligned_cols=117  Identities=28%  Similarity=0.338  Sum_probs=108.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHH
Q psy5490          64 SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLD  143 (352)
Q Consensus        64 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~  143 (352)
                      +.|+.||..|++++|++|+++|+|++.+|.+|+||||+|+..|+.+++++|+++|++++. .+..|+||||+|+..|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~-~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccccccccccc-ccccCcccccccchhhHHH
Confidence            679999999999999999999999999999999999999999999999999999999998 5778999999999999999


Q ss_pred             HHHHHHHcCCCCCC----CCCCHHHHH--HHcCCHHHHHHHHHc
Q psy5490         144 VADFLLKNGANIEL----GASTPLMEA--AQEGHLELVRYLLDS  181 (352)
Q Consensus       144 ~v~~Ll~~g~~~~~----~g~t~L~~A--~~~~~~~~v~~Ll~~  181 (352)
                      ++++|+++|++++.    .+.|+++++  ++.|+.|++++|+..
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999999999864    467887665  577999999999864

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=4e-25  Score=177.60  Aligned_cols=139  Identities=28%  Similarity=0.363  Sum_probs=125.9

Q ss_pred             CccHHHHHHcCCCCCC------------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcC
Q psy5490           6 FESPLTLAACGGHVNM------------PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGG   73 (352)
Q Consensus         6 g~t~L~lA~~~~~~n~------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g   73 (352)
                      +.|+|+.||..|++++            .|..|+||||+|+..++.++++.++......   ...+..+.+++++++...
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR---DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---TCCCTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcccccCCCccccccccccccccccccccccccc---cccccccccccccccccc
Confidence            3589999997666433            4889999999999999999999999887764   344577889999999999


Q ss_pred             CHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHH
Q psy5490          74 HVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL  148 (352)
Q Consensus        74 ~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  148 (352)
                      +.+++++|+.+|++.+.+|.+|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+.+|+.|++++|
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~-~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcc-cCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999999999999999999999999999999999999999999998 578899999999999999999987

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-24  Score=191.44  Aligned_cols=132  Identities=30%  Similarity=0.393  Sum_probs=117.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCCChHHHHHHHcC----CHHHHHHHHHcCCCCCCcCCCCCh
Q psy5490          23 TDSFESPLTLAACGGHVDLALLLIER-GANIEEVNMPTDSFESPLTLAACGG----HVDLALLLIERGANIEEVNDEGYT   97 (352)
Q Consensus        23 d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~n~~~~~g~t~Lh~A~~~g----~~~~v~~Ll~~g~~~~~~d~~G~t   97 (352)
                      +..|.||||+|++.|+.+++++|+++ |+++   +..+..|.++++.+...+    ..+++++|+++|++++.+|..|.|
T Consensus       145 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t  221 (285)
T d1wdya_         145 RKGGATALMDAAEKGHVEVLKILLDEMGADV---NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT  221 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT---TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             cccCchHHHHHHHcCCHHHHHHHHhccCCCc---ccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCC
Confidence            56789999999999999999999975 7774   566688888877665433    347999999999999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhc-CCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q psy5490          98 PLMEAAREGHEEMVCVLLQK-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELG  158 (352)
Q Consensus        98 ~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~  158 (352)
                      |||+|+..|+.++|++|+++ |++++. .+..|.||||+|++.|+.+++++||++||++|..
T Consensus       222 ~L~~a~~~~~~~~v~~lL~~~g~din~-~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         222 PLILAVEKKHLGLVQRLLEQEHIEIND-TDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSSSCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             ccchhhhcCcHHHHHHHHHcCCCCCcC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence            99999999999999999985 999998 5778999999999999999999999999999874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=3.4e-26  Score=176.19  Aligned_cols=104  Identities=28%  Similarity=0.383  Sum_probs=98.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCH
Q psy5490          63 ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFL  142 (352)
Q Consensus        63 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~  142 (352)
                      .|||++|++.|++++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|+||||+|+..|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~-~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTC-CSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeee-cccccccchhhhhhcCch
Confidence            4899999999999999999999999999999999999999999999999999999999998 477899999999999999


Q ss_pred             HHHHHHHHcCCCCCC---CCCCHHHHHH
Q psy5490         143 DVADFLLKNGANIEL---GASTPLMEAA  167 (352)
Q Consensus       143 ~~v~~Ll~~g~~~~~---~g~t~L~~A~  167 (352)
                      +++++|+++|++++.   .|+||||+|.
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            999999999999865   7899999983

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.9e-24  Score=172.07  Aligned_cols=126  Identities=20%  Similarity=0.200  Sum_probs=110.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCc---CCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCcCCCCChHHHH
Q psy5490          28 SPLTLAACGGHVDLALLLIERGANIEEV---NMPTDSFESPLTLAACG---GHVDLALLLIERGANIEEVNDEGYTPLME  101 (352)
Q Consensus        28 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---n~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~  101 (352)
                      ..|+.|++.+++..++.++..|.|+...   ...+..|+||||+|++.   +++++|++|+++|++++.+|.+|+||||+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            3467889999999999999999886532   23457799999999974   67899999999999999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy5490         102 AAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN  154 (352)
Q Consensus       102 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  154 (352)
                      |+..|+.+++++|+++|++++. .+..|+||||+|+..|+.+++++|++.++.
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIEI-ANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccCccccc-cCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999999998 577889999999999999999999987653

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.2e-24  Score=194.79  Aligned_cols=176  Identities=18%  Similarity=0.130  Sum_probs=116.5

Q ss_pred             CCCCCCC-CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCH-------HHHHHHHHcCCC
Q psy5490          16 GGHVNMP-TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV-------DLALLLIERGAN   87 (352)
Q Consensus        16 ~~~~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~-------~~v~~Ll~~g~~   87 (352)
                      +.++|.. |.+|+||||+||..|++++|++|+++|+++   +.+|..|+||||+||..++.       +++++|.   ..
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~---~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~  169 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR---LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PC  169 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GG
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hh
Confidence            4577765 899999999999999999999999999995   55678899999999987642       3455443   34


Q ss_pred             CCCcCCCCChHHHHHHHcCc----H--------HHHHHHHhcCCCcccccccccCcHHHHHHHcCCHHHH-----HHHHH
Q psy5490          88 IEEVNDEGYTPLMEAAREGH----E--------EMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVA-----DFLLK  150 (352)
Q Consensus        88 ~~~~d~~G~t~L~~A~~~g~----~--------~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v-----~~Ll~  150 (352)
                      ++.+|..|+|+||+++..+.    .        .++.++++.+..........+.+.++.+........+     ..++.
T Consensus       170 ~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (301)
T d1sw6a_         170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  249 (301)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh
Confidence            66778889999998886543    2        2445666666555443444455555555444433222     22333


Q ss_pred             cCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccHHHHH
Q psy5490         151 NGANI-ELGASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDILEFK  197 (352)
Q Consensus       151 ~g~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~  197 (352)
                      ...+. |..|+||||+|++.|+.++|++|+++||+++..+..+.+++.
T Consensus       250 ~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~  297 (301)
T d1sw6a_         250 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD  297 (301)
T ss_dssp             HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred             cCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            33332 557889999999999999999999999988888877766543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=3.3e-24  Score=181.04  Aligned_cols=142  Identities=28%  Similarity=0.251  Sum_probs=120.0

Q ss_pred             CCCCccHHHHHHcCCC-------------CCCCCCCCChHHH----------------------------------HHHH
Q psy5490           3 TDSFESPLTLAACGGH-------------VNMPTDSFESPLT----------------------------------LAAC   35 (352)
Q Consensus         3 ~~~g~t~L~lA~~~~~-------------~n~~d~~g~t~L~----------------------------------~A~~   35 (352)
                      |++|+||||+||..|+             +|..+..+.++++                                  .+..
T Consensus        20 d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (209)
T d1ot8a_          20 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR   99 (209)
T ss_dssp             HHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6789999999997765             3444444444444                                  4444


Q ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCcHHHHHHHH
Q psy5490          36 GGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL  115 (352)
Q Consensus        36 ~g~~~~v~~Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~~~~v~~Ll  115 (352)
                      .....+.+.|+..+.++   +..+..|+|+|++++..+..++++.|++++.+++.+|..|.||||+|+..|+.+++++|+
T Consensus       100 ~~~~~~~~~L~~~~~~~---~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll  176 (209)
T d1ot8a_         100 LAIEGMVEDLITADADI---NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALL  176 (209)
T ss_dssp             TTCTTHHHHHHHTTCCT---TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccchhhhhhhhhhcccc---cccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHH
Confidence            45555666677777764   456688999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcccccccccCcHHHHHHHcCCHHHHHHH
Q psy5490         116 QKGAKINAHTEETQETALTLACCGGFLDVADFL  148 (352)
Q Consensus       116 ~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  148 (352)
                      ++|++++. .+..|+||||+|++.|+.++|++|
T Consensus       177 ~~gad~n~-~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         177 DNFANREI-TDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HCCCCCCC-cCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999998 477899999999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=1.8e-25  Score=204.27  Aligned_cols=130  Identities=20%  Similarity=0.119  Sum_probs=107.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHH---HHHcCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCh
Q psy5490          23 TDSFESPLTLAACGGHVDLALL---LIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN--DEGYT   97 (352)
Q Consensus        23 d~~g~t~L~~A~~~g~~~~v~~---Ll~~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d--~~G~t   97 (352)
                      +..|.|+||+||.+|+.+++++   |++.|+++   +..+.+|+||||+||+.|++++|++|+++|++++..+  .+|+|
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i---n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t  163 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIV---KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH  163 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC---C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc---cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCC
Confidence            6688999999999999877665   78889884   6667889999999999999999999999999998775  35899


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCcccc--cccccCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy5490          98 PLMEAAREGHEEMVCVLLQKGAKINAH--TEETQETALTLACCGGFLDVADFLLKNGANI  155 (352)
Q Consensus        98 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  155 (352)
                      |||+|+..|+.++|++|++.|++....  .+..+.|++|+|+.+|+.+++++|+++|+++
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             hhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence            999999999999999999998765321  2345667888888999999999999998765

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=7.9e-23  Score=164.30  Aligned_cols=121  Identities=22%  Similarity=0.232  Sum_probs=108.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCc------CCCCChHHHHHHHc---CcHHHHHHHHhcCCCcccccccccCcHHHH
Q psy5490          65 PLTLAACGGHVDLALLLIERGANIEEV------NDEGYTPLMEAARE---GHEEMVCVLLQKGAKINAHTEETQETALTL  135 (352)
Q Consensus        65 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~------d~~G~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~  135 (352)
                      .|+.|++.+++..+..++..|.|++..      +..|+||||+|++.   +..++|++|+++|++++. .+..|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~-~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-QTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC-CCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhh-hhhhhcccccc
Confidence            466788999999999999999887765      67899999999975   678999999999999998 57789999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q psy5490         136 ACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEM  186 (352)
Q Consensus       136 A~~~g~~~~v~~Ll~~g~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  186 (352)
                      |+..|+.+++++|+++|++++.   .|+||||+|++.|+.+++++|++.++...
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  141 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             ccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence            9999999999999999998855   78999999999999999999999887544

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=8.1e-23  Score=182.84  Aligned_cols=79  Identities=16%  Similarity=0.159  Sum_probs=66.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHHHHHHHcCc-------HHHHHHHHhcCCCcccccccccCc
Q psy5490          59 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGH-------EEMVCVLLQKGAKINAHTEETQET  131 (352)
Q Consensus        59 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L~~A~~~g~-------~~~v~~Ll~~g~~~~~~~~~~g~t  131 (352)
                      |.+|+||||+||..|+.++|++|+++|++++.+|..|+||||+||..++       .+++++|...   ++. .+..|+|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~---~~~-~d~~g~t  179 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC---LIL-EDSMNRT  179 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG---GGE-ECTTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh---hhh-cccccCC
Confidence            7899999999999999999999999999999999999999999998765       2555665543   343 4567899


Q ss_pred             HHHHHHHcCC
Q psy5490         132 ALTLACCGGF  141 (352)
Q Consensus       132 ~L~~A~~~g~  141 (352)
                      +||+++..+.
T Consensus       180 ~lh~~~~~~~  189 (301)
T d1sw6a_         180 ILHHIIITSG  189 (301)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            9999886543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-20  Score=158.96  Aligned_cols=174  Identities=22%  Similarity=0.296  Sum_probs=147.7

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCChHH
Q psy5490          24 DSFESPLTLAACGGHVDLALLLIE----RGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPL   99 (352)
Q Consensus        24 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~d~~G~t~L   99 (352)
                      ++|+||||+||..|+.+++++|++    .|+++   +.+|.+|+||||+|+..|+.++|++|+++|++++..+..|.+++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i---n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~   77 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL---DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA   77 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CccCCCCCccceehhccccccccccccccccccccccccccccc
Confidence            479999999999999999998875    78884   66779999999999999999999999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCcc---cccccccCcHHHHHHHcCCHHHHHHHHHcCCCCC----CCCCCHHHHHHHcCCH
Q psy5490         100 MEAAREGHEEMVCVLLQKGAKIN---AHTEETQETALTLACCGGFLDVADFLLKNGANIE----LGASTPLMEAAQEGHL  172 (352)
Q Consensus       100 ~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----~~g~t~L~~A~~~~~~  172 (352)
                      +.|...++.++++.+........   ........++|+.+.........+.|.....+..    ..+.++|+.|+..+..
T Consensus        78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_          78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhh
Confidence            99999999999998877643221   1134456799999999999999999998877643    3678999999999999


Q ss_pred             HHHHHHHHcCCCccccccccHHHHHHHh
Q psy5490         173 ELVRYLLDSGAQEMQTKHIDILEFKKRK  200 (352)
Q Consensus       173 ~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  200 (352)
                      +++++++++|......+..+.+......
T Consensus       158 ~~~~~~~~~~~~~~~~d~~g~t~L~~A~  185 (228)
T d1k1aa_         158 SMVQLLLQHGANVNAQMYSGSSALHSAS  185 (228)
T ss_dssp             HHHHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred             hhhhhhhhhccccccccccCcchHHHHH
Confidence            9999999999988877766555544433