Psyllid ID: psy5550

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MGFTDHESGINTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQMCSEL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccccccccccccEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEcccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgftdhesgintsyvfgiddkdgwgpryfFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSipgimyarvspqwplgdvlckimpysqmcsel
Flexible Loop (DISEMBL)
mgftdhesgintsyvfgiddkdgwGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQMCSEL
Low Complexity Region (SEG)
MGFTDHESGINTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQMCSEL
Disordered region (IsUnstruct)
*********INTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYS******
Disordered Region (DISOPRED)
*******SGINTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQMCSEL
Disordered Region (DISEMBL)
MGFTDHESGINTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQMCSEL
Disordered Region (DISPRO)
****DHESGINTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQMCSEL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGFTDHESGINTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQMCSEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
P30553	452	Gastrin/cholecystokinin t	yes	N/A	0.661	0.185	0.341	5e-09
P31391	388	Somatostatin receptor typ	yes	N/A	0.614	0.201	0.346	1e-08
P30796	450	Gastrin/cholecystokinin t	N/A	N/A	0.661	0.186	0.329	1e-08
P32239	447	Gastrin/cholecystokinin t	no	N/A	0.661	0.187	0.329	1e-08
P30937	384	Somatostatin receptor typ	no	N/A	0.543	0.179	0.362	1e-08
P56481	453	Gastrin/cholecystokinin t	no	N/A	0.661	0.185	0.329	1e-08
P49660	384	Somatostatin receptor typ	yes	N/A	0.543	0.179	0.362	2e-08
P56719	460	Orexin receptor type 2 OS	no	N/A	0.582	0.160	0.346	2e-08
P58308	460	Orexin receptor type 2 OS	no	N/A	0.582	0.160	0.346	2e-08
P46627	452	Gastrin/cholecystokinin t	no	N/A	0.661	0.185	0.317	2e-08

>sp|P30553|GASR_RAT Gastrin/cholecystokinin type B receptor OS=Rattus norvegicus GN=Cckbr PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 37  GNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS- 95
           G RE EM+  I L ++IF++S+G N+ +++ +     L+TVTN FLL+L  +D+L  ++ 
Sbjct: 48  GTRELEMAIRITLYAVIFLMSVGGNVLIIVVLGLSRRLRTVTNAFLLSLAVSDLLLAVAC 107

Query: 96  IPGIMYARVSPQWPLGDVLCKIMPY 120
           +P  +   +   +  G V+CK + Y
Sbjct: 108 MPFTLLPNLMGTFIFGTVICKAISY 132

Receptor for gastrin and cholecystokinin. The CKK-B receptors occur throughout the central nervous system where they modulate anxiety, analgesia, arousal, and neuroleptic activity. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.
Rattus norvegicus (taxid: 10116)

>sp|P31391|SSR4_HUMAN Somatostatin receptor type 4 OS=Homo sapiens GN=SSTR4 PE=2 SV=2

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 44/78 (56%)

Query: 39  REFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPG 98
           R   M A  C+ +++ ++ +  N  V+  ++ Y  ++T TN +LLNL  AD LF LS+P 
Sbjct: 43  RAAGMVAIQCIYALVCLVGLVGNALVIFVILRYAKMKTATNIYLLNLAVADELFMLSVPF 102

Query: 99  IMYARVSPQWPLGDVLCK 116
           +  +     WP G VLC+
Sbjct: 103 VASSAALRHWPFGSVLCR 120

Receptor for somatostatin-14. The activity of this receptor is mediated by G proteins which inhibits adenylyl cyclase. It is functionally coupled not only to inhibition of adenylate cyclase, but also to activation of both arachidonate release and mitogen-activated protein (MAP) kinase cascade. Mediates antiproliferative action of somatostatin in tumor cells.

Homo sapiens (taxid: 9606)

>sp|P30796|GASR_PRANA Gastrin/cholecystokinin type B receptor OS=Praomys natalensis GN=CCKBR PE=2 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 37  GNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS- 95
           G RE E++  I L ++IF++S+G N+ +++ +     L+TVTN FLL+L  +D+L  ++ 
Sbjct: 48  GTRELELAIRITLYAVIFLMSIGGNMLIIVVLGLSRRLRTVTNAFLLSLAVSDLLLAVAC 107

Query: 96  IPGIMYARVSPQWPLGDVLCKIMPY 120
           +P  +   +   +  G V+CK + Y
Sbjct: 108 MPFTLLPNLMGTFIFGTVICKAVSY 132

Receptor for gastrin and cholecystokinin. The CKK-B receptors occur throughout the central nervous system where they modulate anxiety, analgesia, arousal, and neuroleptic activity. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Praomys natalensis (taxid: 10112)

>sp|P32239|GASR_HUMAN Gastrin/cholecystokinin type B receptor OS=Homo sapiens GN=CCKBR PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 37  GNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS- 95
           G RE E++  I L ++IF++S+G N+ +++ +     L+TVTN FLL+L  +D+L  ++ 
Sbjct: 48  GTRELELAIRITLYAVIFLMSVGGNMLIIVVLGLSRRLRTVTNAFLLSLAVSDLLLAVAC 107

Query: 96  IPGIMYARVSPQWPLGDVLCKIMPY 120
           +P  +   +   +  G V+CK + Y
Sbjct: 108 MPFTLLPNLMGTFIFGTVICKAVSY 132

Isoform 2 is constitutively activated and may regulate cancer cell proliferation via a gastrin-independent mechanism.

Homo sapiens (taxid: 9606)

>sp|P30937|SSR4_RAT Somatostatin receptor type 4 OS=Rattus norvegicus GN=Sstr4 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query: 48  CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQ 107
           C+ +++ ++ +  N  V+  ++ Y  ++T TN +LLNL  AD LF LS+P +  A     
Sbjct: 48  CIYALVCLVGLVGNALVIFVILRYAKMKTATNIYLLNLAVADELFMLSVPFVASAAALRH 107

Query: 108 WPLGDVLCK 116
           WP G VLC+
Sbjct: 108 WPFGAVLCR 116

Receptor for somatostatin-14. The activity of this receptor is mediated by G proteins which inhibits adenylyl cyclase. It is functionally coupled not only to inhibition of adenylate cyclase, but also to activation of both arachidonate release and mitogen-activated protein (MAP) kinase cascade.

Rattus norvegicus (taxid: 10116)

>sp|P56481|GASR_MOUSE Gastrin/cholecystokinin type B receptor OS=Mus musculus GN=Cckbr PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 37  GNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS- 95
           G RE E++  I L ++IF++S+G N+ +++ +     L+TVTN FLL+L  +D+L  ++ 
Sbjct: 48  GTRELELTIRITLYAVIFLMSVGGNVLIIVVLGLSRRLRTVTNAFLLSLAVSDLLLAVAC 107

Query: 96  IPGIMYARVSPQWPLGDVLCKIMPY 120
           +P  +   +   +  G V+CK + Y
Sbjct: 108 MPFTLLPNLMGTFIFGTVICKAVSY 132

Receptor for gastrin and cholecystokinin. The CKK-B receptors occur throughout the central nervous system where they modulate anxiety, analgesia, arousal, and neuroleptic activity. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Mus musculus (taxid: 10090)

>sp|P49660|SSR4_MOUSE Somatostatin receptor type 4 OS=Mus musculus GN=Sstr4 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query: 48  CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQ 107
           C+ +++ ++ +  N  V+  ++ Y  ++T TN +LLNL  AD LF LS+P +  A     
Sbjct: 48  CIYALVCLVGLVGNALVIFVILRYAKMKTATNIYLLNLAVADELFMLSVPFVRSAAALRH 107

Query: 108 WPLGDVLCK 116
           WP G VLC+
Sbjct: 108 WPFGAVLCR 116

Receptor for somatostatin-14. The activity of this receptor is mediated by G proteins which inhibits adenylyl cyclase. It is functionally coupled not only to inhibition of adenylate cyclase, but also to activation of both arachidonate release and mitogen-activated protein (MAP) kinase cascade.

Mus musculus (taxid: 10090)

>sp|P56719|OX2R_RAT Orexin receptor type 2 OS=Rattus norvegicus GN=Hcrtr2 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 52  IIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS-IPGIMYARVSPQWPL 110
           I+F++++  N+ V + V     ++TVTNYF++NL+ AD+L  ++ +P  +   ++  W  
Sbjct: 63  IVFVVALIGNVLVCVAVWKNHHMRTVTNYFIVNLSLADVLVTITCLPATLVVDITETWFF 122

Query: 111 GDVLCKIMPYSQMCS 125
           G  LCK++PY Q  S
Sbjct: 123 GQSLCKVIPYLQTVS 137

Nonselective, high-affinity receptor for both orexin-A and orexin-B neuropeptides.

Rattus norvegicus (taxid: 10116)

>sp|P58308|OX2R_MOUSE Orexin receptor type 2 OS=Mus musculus GN=Hcrtr2 PE=2 SV=2

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 52  IIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS-IPGIMYARVSPQWPL 110
           I+F++++  N+ V + V     ++TVTNYF++NL+ AD+L  ++ +P  +   ++  W  
Sbjct: 63  IVFVVALIGNVLVCVAVWKNHHMRTVTNYFIVNLSLADVLVTITCLPATLVVDITETWFF 122

Query: 111 GDVLCKIMPYSQMCS 125
           G  LCK++PY Q  S
Sbjct: 123 GQSLCKVIPYLQTVS 137

Nonselective, high-affinity receptor for both orexin-A and orexin-B neuropeptides.

Mus musculus (taxid: 10090)

>sp|P46627|GASR_RABIT Gastrin/cholecystokinin type B receptor OS=Oryctolagus cuniculus GN=CCKBR PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 37  GNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS- 95
           G RE E++  + L ++IF++S+G N+ +++ +     L+TVTN FLL+L  +D+L  ++ 
Sbjct: 46  GTRELELAIRVTLYAVIFLMSVGGNILIIVVLGLSRRLRTVTNAFLLSLAVSDLLLAVAC 105

Query: 96  IPGIMYARVSPQWPLGDVLCKIMPY 120
           +P  +   +   +  G V+CK + Y
Sbjct: 106 MPFTLLPNLMGTFIFGTVICKAVSY 130

Receptor for gastrin and cholecystokinin. The CKK-B receptors occur throughout the central nervous system where they modulate anxiety, analgesia, arousal, and neuroleptic activity. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Oryctolagus cuniculus (taxid: 9986)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
328700440	420	PREDICTED: neuropeptide FF receptor 2-li	0.905	0.273	0.504	4e-29
242013301	455	class A rhodopsin-like G-protein coupled	0.850	0.237	0.469	6e-22
345478784	448	PREDICTED: orexin receptor type 2-like [	0.874	0.247	0.460	4e-19
270015914	417	hypothetical protein TcasGA2_TC002068 [T	0.905	0.275	0.482	5e-18
189242041	546	PREDICTED: similar to neuropeptide Y rec	0.905	0.210	0.482	7e-18
405960771	365	hypothetical protein CGI_10017886 [Crass	0.889	0.309	0.368	2e-13
269784939	423	orexin receptor-like protein [Saccogloss	0.771	0.231	0.372	6e-09
402232704	420	TPA_inf: SIFamide receptor, partial [Ano	0.779	0.235	0.370	2e-08
194741702	781	GF17259 [Drosophila ananassae] gi|190626	0.732	0.119	0.38	3e-08
206584511	453	neuropeptide Y2/7 receptor [Lampetra flu	0.834	0.233	0.319	3e-08

>gi|328700440|ref|XP_003241258.1| PREDICTED: neuropeptide FF receptor 2-like [Acyrthosiphon pisum]

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/115 (50%), Positives = 81/115 (70%)

Query: 8   SGINTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLIT 67
           S  NTSY+ G D   GWGPRYFFTFY+EFG+ + E + E+ +  +IF  S+ AN+ +   
Sbjct: 2   SLFNTSYLMGNDTTGGWGPRYFFTFYSEFGDEQAESAVEVTVFMVIFAASVVANVSIAWA 61

Query: 68  VMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQ 122
           V+ Y  ++TVTN FLLNLT AD+LF ++ P + Y RV P WP GD++C+++PYSQ
Sbjct: 62  VLRYREMRTVTNCFLLNLTVADLLFAITTPALAYVRVRPDWPFGDLVCRLLPYSQ 116

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013301|ref|XP_002427349.1| class A rhodopsin-like G-protein coupled receptor GPRnna15, putative [Pediculus humanus corporis] gi|212511708|gb|EEB14611.1| class A rhodopsin-like G-protein coupled receptor GPRnna15, putative [Pediculus humanus corporis]

 Score =  108 bits (270), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 74/115 (64%), Gaps = 7/115 (6%)

Query: 8   SGINTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLIT 67
           SG N+SYVFG D   GWGP       +EFG R     AE+  LS+ F+LS+  N+ +   
Sbjct: 2   SGWNSSYVFGNDLISGWGP-------SEFGQRRGASEAEVTALSLTFVLSVVLNVSIACA 54

Query: 68  VMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQ 122
           V+ Y  ++T+TN FLLNLTAAD++F + IP +   R++  W LGDV C+I+PYSQ
Sbjct: 55  VLRYREMRTITNCFLLNLTAADLVFAMGIPFVAVTRITQNWILGDVTCRILPYSQ 109

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345478784|ref|XP_003423809.1| PREDICTED: orexin receptor type 2-like [Nasonia vitripennis]

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/113 (46%), Positives = 81/113 (71%), Gaps = 2/113 (1%)

Query: 10  INTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVM 69
           +N+SYV G DD+D WG RYFFT+Y+EFG+R      E+ +L++ F++++GANL +   V+
Sbjct: 1   MNSSYVMG-DDED-WGRRYFFTYYSEFGDRRGASGIEVLVLAVSFVVAVGANLGIAACVL 58

Query: 70  WYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQ 122
            Y  ++T TN  L+NL AAD+LF L +P + Y R++  W LG+ +C+++PYSQ
Sbjct: 59  RYREMRTPTNLCLVNLAAADLLFALGVPAVAYTRLTQSWRLGEAVCRMLPYSQ 111

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270015914|gb|EFA12362.1| hypothetical protein TcasGA2_TC002068 [Tribolium castaneum]

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 1/116 (0%)

Query: 11  NTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSA-EICLLSIIFILSMGANLFVLITVM 69
           NTSYVF  D   GWG RYFFT++TEF  R     A E  +   IFI+S+ AN  ++I V+
Sbjct: 7   NTSYVFANDTSSGWGERYFFTYFTEFDGRPLNYVAIEAAIFLAIFIISVIANTSIIICVI 66

Query: 70  WYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQMCS 125
            +P ++TVTN F+LNL AAD+LF  +IP + Y R+   W LGD  CK +PY +  S
Sbjct: 67  RFPDMRTVTNCFVLNLAAADLLFAATIPAVAYTRIVSSWKLGDFACKFIPYMEFVS 122

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189242041|ref|XP_001808438.1| PREDICTED: similar to neuropeptide Y receptor Y2 [Tribolium castaneum]

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 1/116 (0%)

Query: 11  NTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSA-EICLLSIIFILSMGANLFVLITVM 69
           NTSYVF  D   GWG RYFFT++TEF  R     A E  +   IFI+S+ AN  ++I V+
Sbjct: 136 NTSYVFANDTSSGWGERYFFTYFTEFDGRPLNYVAIEAAIFLAIFIISVIANTSIIICVI 195

Query: 70  WYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQMCS 125
            +P ++TVTN F+LNL AAD+LF  +IP + Y R+   W LGD  CK +PY +  S
Sbjct: 196 RFPDMRTVTNCFVLNLAAADLLFAATIPAVAYTRIVSSWKLGDFACKFIPYMEFVS 251

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405960771|gb|EKC26654.1| hypothetical protein CGI_10017886 [Crassostrea gigas]

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 1/114 (0%)

Query: 8   SGINTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMS-AEICLLSIIFILSMGANLFVLI 66
           + +N SY FG D + GWG   +FT+++EF      +   E  +L I+FI ++  N  V  
Sbjct: 2   ANVNKSYFFGPDQEHGWGNTSYFTYFSEFNRSWLGLPYIEAVVLIILFIFALIGNFVVFF 61

Query: 67  TVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPY 120
            ++   + +TVTNY + NL  ADILF    P I  AR++  W LG  +CK++ Y
Sbjct: 62  QILKVRSTRTVTNYLICNLAVADILFVSGSPLIAAARLTGTWVLGTFVCKMLVY 115

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|269784939|ref|NP_001161621.1| orexin receptor-like protein [Saccoglossus kowalevskii] gi|268054247|gb|ACY92610.1| orexin receptor-like protein [Saccoglossus kowalevskii]

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 28  YFFTFYTEFGNREFEMSAEICLLS---IIFILSMGANLFVLITVMWYPALQTVTNYFLLN 84
           Y   F     N  F ++ E  L+S   ++FIL++G N+ V   V+  P ++TVTNY++LN
Sbjct: 35  YEARFVNNLRNFVFPVTHEWVLISAYFLVFILALGGNVLVCYAVLRNPQMRTVTNYYILN 94

Query: 85  LTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYSQMCS 125
           L+ ADIL  L  +P  +    S  W  G++ CK++PY Q+ S
Sbjct: 95  LSIADILVSLICLPITVVFETSETWFFGNLACKLIPYFQVVS 136

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|402232704|tpg|DAA35193.1| TPA_inf: SIFamide receptor, partial [Anopheles gambiae]

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 9/108 (8%)

Query: 22  DGWGPRYFFTFYTEFGNREFEMSAEICLLS-IIFILSMGANLFVLITVMWYPALQTVTNY 80
           D  GP   F  Y  F    + M+A  C+   I+FI+ +  N FV+  V   P ++TVTN+
Sbjct: 8   DTAGP---FEEYELFYRHSYTMTAVYCVAYFIVFIVGLVGNSFVIAVVFRAPRMRTVTNF 64

Query: 81  FLLNLTAADIL---FCLSIPGIMYARVSPQWPLGDVLCKIMPYSQMCS 125
           F++NL  AD+L   FCL  P  + + +   W LG ++CK +PY Q  S
Sbjct: 65  FIVNLAVADVLVIVFCL--PATLMSNIFVPWMLGWLMCKTVPYIQGVS 110

Source: Anopheles gambiae

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194741702|ref|XP_001953326.1| GF17259 [Drosophila ananassae] gi|190626385|gb|EDV41909.1| GF17259 [Drosophila ananassae]

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 7/100 (7%)

Query: 30  FTFYTEFGNREFEMSAEICLLSI-IFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAA 88
           FTF   +      MS   C+  I +F++ +  N FV+  V+  P ++TVTNYF++NL  A
Sbjct: 219 FTFDPLY-RHSLAMSIVYCVAYILVFLVGLVGNSFVIAVVLRAPRMRTVTNYFIVNLAIA 277

Query: 89  DIL---FCLSIPGIMYARVSPQWPLGDVLCKIMPYSQMCS 125
           DIL   FCL  P  + + +   W LG ++CK +PY Q  S
Sbjct: 278 DILVIVFCL--PATLISNIFVPWMLGWLMCKFVPYIQGVS 315

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|206584511|gb|ACI15384.1| neuropeptide Y2/7 receptor [Lampetra fluviatilis]

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 13/119 (10%)

Query: 22  DGW-------GPRYFFTFYTEFGNREFE--MSAEICLL---SIIFILSMGANLFVLITVM 69
           DGW       GP+      +E G R+    +  ++ L+   SII +L +  N  V+  + 
Sbjct: 29  DGWALASPESGPQPSLVVASELGVRDSTKLLGVQVVLIAAYSIIILLGVVGNSLVIYLIA 88

Query: 70  WYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVSPQWPLGDVLCKIMPYSQMCSEL 127
            Y  ++TVTNYF+ NL  AD+L   L +P  +   ++ +W  G VLC ++P+SQ  + L
Sbjct: 89  RYRGMRTVTNYFIANLALADLLVNALCLPFTLAYTLTDEWSFGSVLCHLVPFSQALAVL 147

Source: Lampetra fluviatilis

Species: Lampetra fluviatilis

Genus: Lampetra

Family: Petromyzontidae

Order: Petromyzontiformes

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
UNIPROTKB|P56482	355	CCR1 "C-C chemokine receptor t	0.622	0.222	0.341	7.2e-11
UNIPROTKB|Q2Y2P0	355	CCR1 "C-C chemokine receptor t	0.622	0.222	0.341	7.2e-11
MGI|MGI:87965	359	Agtr1b "angiotensin II recepto	0.543	0.192	0.442	2.6e-10
UNIPROTKB|G3V899	163	Cckbr "Cholecystokinin B recep	0.661	0.515	0.341	3.2e-10
UNIPROTKB|P25104	359	AGTR1 "Type-1 angiotensin II r	0.543	0.192	0.428	4.4e-10
UNIPROTKB|J9P4E2	359	AGTR1 "Type-1 angiotensin II r	0.543	0.192	0.428	4.4e-10
UNIPROTKB|P43240	359	AGTR1 "Type-1 angiotensin II r	0.543	0.192	0.428	4.4e-10
UNIPROTKB|P30556	359	AGTR1 "Type-1 angiotensin II r	0.543	0.192	0.428	4.4e-10
UNIPROTKB|P30555	359	AGTR1 "Type-1 angiotensin II r	0.543	0.192	0.428	4.4e-10
FB|FBgn0038880	758	SIFR "SIFamide receptor" [Dros	0.614	0.102	0.404	4.5e-10

UNIPROTKB|P56482 CCR1 "C-C chemokine receptor type 1" [Macaca mulatta (taxid:9544)]

 Score = 157 (60.3 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 28/82 (34%), Positives = 53/82 (64%)

Query:    49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQW 108
             L S++F++ +  NL V++ ++ Y  L+ +TN +LLNL  +D+LF  ++P ++Y + +  W
Sbjct:    40 LYSLVFVIGVVGNLLVVLVLVQYKRLKNMTNIYLLNLAISDLLFLFTLPFLIYYKSTDDW 99

Query:   109 PLGDVLCKIMP---YSQMCSEL 127
               GD +CKI+    Y+ + SE+
Sbjct:   100 IFGDAMCKILSGFYYTGLYSEI 121

GO:0005886 "plasma membrane" evidence=ISS

GO:0090026 "positive regulation of monocyte chemotaxis" evidence=ISS

UNIPROTKB|Q2Y2P0 CCR1 "C-C chemokine receptor type 1" [Macaca fascicularis (taxid:9541)]

 Score = 157 (60.3 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 28/82 (34%), Positives = 53/82 (64%)

Query:    49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQW 108
             L S++F++ +  NL V++ ++ Y  L+ +TN +LLNL  +D+LF  ++P ++Y + +  W
Sbjct:    40 LYSLVFVIGVVGNLLVVLVLVQYKRLKNMTNIYLLNLAISDLLFLFTLPFLIYYKSTDDW 99

Query:   109 PLGDVLCKIMP---YSQMCSEL 127
               GD +CKI+    Y+ + SE+
Sbjct:   100 IFGDAMCKILSGFYYTGLYSEI 121

GO:0005886 "plasma membrane" evidence=ISS

GO:0090026 "positive regulation of monocyte chemotaxis" evidence=ISS

MGI|MGI:87965 Agtr1b "angiotensin II receptor, type 1b" [Mus musculus (taxid:10090)]

 Score = 152 (58.6 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 31/70 (44%), Positives = 45/70 (64%)

Query:    49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIP-GIMYARVSPQ 107
             L SIIF++ +  N  V+I + +Y  L+TV + FLLNL  AD+ F L++P   +Y  +  Q
Sbjct:    34 LYSIIFVVGIFGNSLVVIVIYFYMKLKTVASVFLLNLALADLCFLLTLPLWAVYTAMEYQ 93

Query:   108 WPLGDVLCKI 117
             WP G+ LCKI
Sbjct:    94 WPFGNHLCKI 103

GO:0001568 "blood vessel development" evidence=IGI

GO:0001596 "angiotensin type I receptor activity" evidence=ISO

GO:0001822 "kidney development" evidence=ISO;IGI

GO:0001991 "regulation of systemic arterial blood pressure by circulatory renin-angiotensin" evidence=IGI

GO:0002035 "brain renin-angiotensin system" evidence=IMP

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004945 "angiotensin type II receptor activity" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006954 "inflammatory response" evidence=IGI

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISO

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=ISO

GO:0007266 "Rho protein signal transduction" evidence=ISO

GO:0010698 "acetyltransferase activator activity" evidence=ISO

GO:0010873 "positive regulation of cholesterol esterification" evidence=ISO

GO:0012506 "vesicle membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0017046 "peptide hormone binding" evidence=ISO

GO:0019229 "regulation of vasoconstriction" evidence=ISO

GO:0019722 "calcium-mediated signaling" evidence=ISO

GO:0031711 "bradykinin receptor binding" evidence=ISO

GO:0031983 "vesicle lumen" evidence=ISO

GO:0032270 "positive regulation of cellular protein metabolic process" evidence=ISO

GO:0032430 "positive regulation of phospholipase A2 activity" evidence=ISO

GO:0042756 "drinking behavior" evidence=IGI;IMP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IMP

GO:0043621 "protein self-association" evidence=ISO

GO:0043627 "response to estrogen stimulus" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0051482 "elevation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway" evidence=ISO

GO:0060326 "cell chemotaxis" evidence=ISO

GO:0071549 "cellular response to dexamethasone stimulus" evidence=ISO

GO:0086097 "phospholipase C-activating angiotensin-mediated signaling pathway" evidence=ISO

GO:0090190 "positive regulation of branching involved in ureteric bud morphogenesis" evidence=ISO

UNIPROTKB|G3V899 Cckbr "Cholecystokinin B receptor, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 29/85 (34%), Positives = 52/85 (61%)

Query:    37 GNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS- 95
             G RE EM+  I L ++IF++S+G N+ +++ +     L+TVTN FLL+L  +D+L  ++ 
Sbjct:    48 GTRELEMAIRITLYAVIFLMSVGGNVLIIVVLGLSRRLRTVTNAFLLSLAVSDLLLAVAC 107

Query:    96 IPGIMYARVSPQWPLGDVLCKIMPY 120
             +P  +   +   +  G V+CK + Y
Sbjct:   108 MPFTLLPNLMGTFIFGTVICKAISY 132

GO:0015054 "gastrin receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P25104 AGTR1 "Type-1 angiotensin II receptor" [Bos taurus (taxid:9913)]

 Score = 150 (57.9 bits), Expect = 4.4e-10, P = 4.4e-10
 Identities = 30/70 (42%), Positives = 45/70 (64%)

Query:    49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIP-GIMYARVSPQ 107
             L SIIF++ +  N  V+I + +Y  L+TV + FLLNL  AD+ F L++P   +Y  +  +
Sbjct:    34 LYSIIFVVGIFGNSLVVIVIYFYMKLKTVASVFLLNLALADLCFLLTLPLWAVYTAMEYR 93

Query:   108 WPLGDVLCKI 117
             WP G+ LCKI
Sbjct:    94 WPFGNYLCKI 103

GO:0005886 "plasma membrane" evidence=IEA

GO:0060326 "cell chemotaxis" evidence=IEA

GO:0051482 "elevation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0032430 "positive regulation of phospholipase A2 activity" evidence=IEA

GO:0032270 "positive regulation of cellular protein metabolic process" evidence=IEA

GO:0031711 "bradykinin receptor binding" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0010873 "positive regulation of cholesterol esterification" evidence=IEA

GO:0010698 "acetyltransferase activator activity" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0004945 "angiotensin type II receptor activity" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0001596 "angiotensin type I receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|J9P4E2 AGTR1 "Type-1 angiotensin II receptor" [Canis lupus familiaris (taxid:9615)]

 Score = 150 (57.9 bits), Expect = 4.4e-10, P = 4.4e-10
 Identities = 30/70 (42%), Positives = 45/70 (64%)

Query:    49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIP-GIMYARVSPQ 107
             L SIIF++ +  N  V+I + +Y  L+TV + FLLNL  AD+ F L++P   +Y  +  +
Sbjct:    34 LYSIIFVVGIFGNSLVVIVIYFYMKLKTVASVFLLNLALADLCFLLTLPLWAVYTAMEYR 93

Query:   108 WPLGDVLCKI 117
             WP G+ LCKI
Sbjct:    94 WPFGNYLCKI 103

GO:0016021 "integral to membrane" evidence=IEA

GO:0004945 "angiotensin type II receptor activity" evidence=IEA

UNIPROTKB|P43240 AGTR1 "Type-1 angiotensin II receptor" [Canis lupus familiaris (taxid:9615)]

 Score = 150 (57.9 bits), Expect = 4.4e-10, P = 4.4e-10
 Identities = 30/70 (42%), Positives = 45/70 (64%)

Query:    49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIP-GIMYARVSPQ 107
             L SIIF++ +  N  V+I + +Y  L+TV + FLLNL  AD+ F L++P   +Y  +  +
Sbjct:    34 LYSIIFVVGIFGNSLVVIVIYFYMKLKTVASVFLLNLALADLCFLLTLPLWAVYTAMEYR 93

Query:   108 WPLGDVLCKI 117
             WP G+ LCKI
Sbjct:    94 WPFGNYLCKI 103

GO:0016021 "integral to membrane" evidence=IEA

GO:0004945 "angiotensin type II receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|P30556 AGTR1 "Type-1 angiotensin II receptor" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 4.4e-10, P = 4.4e-10
 Identities = 30/70 (42%), Positives = 45/70 (64%)

Query:    49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIP-GIMYARVSPQ 107
             L SIIF++ +  N  V+I + +Y  L+TV + FLLNL  AD+ F L++P   +Y  +  +
Sbjct:    34 LYSIIFVVGIFGNSLVVIVIYFYMKLKTVASVFLLNLALADLCFLLTLPLWAVYTAMEYR 93

Query:   108 WPLGDVLCKI 117
             WP G+ LCKI
Sbjct:    94 WPFGNYLCKI 103

GO:0016021 "integral to membrane" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0060326 "cell chemotaxis" evidence=IDA

GO:0007266 "Rho protein signal transduction" evidence=IDA

GO:0004945 "angiotensin type II receptor activity" evidence=IDA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IDA

GO:0019722 "calcium-mediated signaling" evidence=IDA

GO:0051482 "elevation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway" evidence=IDA

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=TAS

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=NAS

GO:0033864 "positive regulation of NAD(P)H oxidase activity" evidence=TAS

GO:0050729 "positive regulation of inflammatory response" evidence=TAS

GO:0001596 "angiotensin type I receptor activity" evidence=IDA;IPI

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0003081 "regulation of systemic arterial blood pressure by renin-angiotensin" evidence=IC

GO:0019229 "regulation of vasoconstriction" evidence=IC;IDA;NAS

GO:0042312 "regulation of vasodilation" evidence=IC

GO:0050727 "regulation of inflammatory response" evidence=IC

GO:0002034 "regulation of blood vessel size by renin-angiotensin" evidence=IC

GO:0031711 "bradykinin receptor binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0032430 "positive regulation of phospholipase A2 activity" evidence=IMP

GO:0034374 "low-density lipoprotein particle remodeling" evidence=NAS

GO:0010698 "acetyltransferase activator activity" evidence=IMP

GO:0010744 "positive regulation of macrophage derived foam cell differentiation" evidence=IC

GO:0032270 "positive regulation of cellular protein metabolic process" evidence=IMP

GO:0010873 "positive regulation of cholesterol esterification" evidence=IMP

GO:0001558 "regulation of cell growth" evidence=NAS

GO:0002018 "renin-angiotensin regulation of aldosterone production" evidence=NAS

GO:0035813 "regulation of renal sodium excretion" evidence=NAS

GO:0042127 "regulation of cell proliferation" evidence=NAS

GO:0001822 "kidney development" evidence=IMP

GO:0086097 "phospholipase C-activating angiotensin-mediated signaling pathway" evidence=IDA;IPI

UNIPROTKB|P30555 AGTR1 "Type-1 angiotensin II receptor" [Sus scrofa (taxid:9823)]

 Score = 150 (57.9 bits), Expect = 4.4e-10, P = 4.4e-10
 Identities = 30/70 (42%), Positives = 45/70 (64%)

Query:    49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIP-GIMYARVSPQ 107
             L SIIF++ +  N  V+I + +Y  L+TV + FLLNL  AD+ F L++P   +Y  +  +
Sbjct:    34 LYSIIFVVGIFGNSLVVIVIYFYMKLKTVASVFLLNLALADLCFLLTLPLWAVYTAMEYR 93

Query:   108 WPLGDVLCKI 117
             WP G+ LCKI
Sbjct:    94 WPFGNYLCKI 103

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004945 "angiotensin type II receptor activity" evidence=IEA

FB|FBgn0038880 SIFR "SIFamide receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 155 (59.6 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 34/84 (40%), Positives = 50/84 (59%)

Query:    43 MSAEICLLSII-FILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADIL---FCLSIPG 98
             MS   C+  I+ F++ +  N FV+  V+  P ++TVTNYF++NL  ADIL   FCL  P 
Sbjct:   207 MSMVYCVAYIVVFLVGLIGNSFVIAVVLRAPRMRTVTNYFIVNLAIADILVIVFCL--PA 264

Query:    99 IMYARVSPQWPLGDVLCKIMPYSQ 122
              +   +   W LG ++CK +PY Q
Sbjct:   265 TLIGNIFVPWMLGWLMCKFVPYIQ 288

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0008528 "G-protein coupled peptide receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA

GO:0004930 "G-protein coupled receptor activity" evidence=ISS

GO:0004984 "olfactory receptor activity" evidence=IEA

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	127
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	2e-09
PHA03087	335	PHA03087, PHA03087, G protein-coupled chemokine re	3e-09
PHA02638	417	PHA02638, PHA02638, CC chemokine receptor-like pro	7e-07

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 66  ITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIM-YARVSPQWPLGDVLCKIMPYSQMC 124
           + ++    L+T TN FLLNL  AD+LF L++P    Y  V   WP GD LCK++ +  + 
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60

Query: 125 S 125
           +
Sbjct: 61  N 61

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 47  ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSP 106
           I + S IF   +  N+ V I V+    ++T  + +LLNL  +D+LF +++P  +Y  +  
Sbjct: 44  IVVYSTIFFFGLVGNIIV-IYVLTKTKIKTPMDIYLLNLAVSDLLFVMTLPFQIYYYILF 102

Query: 107 QWPLGDVLCKIM 118
           QW  G+  CKI+
Sbjct: 103 QWSFGEFACKIV 114

Length = 335

>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional

 Score = 46.2 bits (109), Expect = 7e-07
 Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 52  IIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLG 111
           IIFIL +  N  + I +++   ++T+T+ ++ NL  +D++F +  P I+Y     QW  G
Sbjct: 107 IIFILGLFGNAAI-IMILFCKKIKTITDIYIFNLAISDLIFVIDFPFIIYNEFD-QWIFG 164

Query: 112 DVLCKIMPYS 121
           D +CK++  S
Sbjct: 165 DFMCKVISAS 174

Length = 417

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
KOG4219|consensus	423		99.67
PHA03234	338	DNA packaging protein UL33; Provisional	99.62
KOG4220|consensus	503		99.46
PHA02834	323	chemokine receptor-like protein; Provisional	99.43
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.38
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.35
PHA03235	409	DNA packaging protein UL33; Provisional	99.29
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.02
KOG2087|consensus	363		98.21
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	98.16
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	97.26
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	96.87
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	96.61
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	95.55
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	95.53
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	95.38
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	95.05
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	91.65
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	85.48

>KOG4219|consensus

Probab=99.67  E-value=5.8e-17  Score=121.59  Aligned_cols=92  Identities=21%  Similarity=0.366  Sum_probs=85.0

Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCccccccc
Q psy5550          35 EFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDV  113 (127)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~  113 (127)
                      ....+..+..+++++|+++.+++++||++|+|++..+|++|+.+|+|++|||+||++.++ ..|+.......+.|.+|.+
T Consensus        27 ~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f  106 (423)
T KOG4219|consen   27 LFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSF  106 (423)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccc
Confidence            456788888999999999999999999999999999999999999999999999999999 9999988888889999999


Q ss_pred             ccccchhhhhhcC
Q psy5550         114 LCKIMPYSQMCSE  126 (127)
Q Consensus       114 ~C~~~~~~~~~~~  126 (127)
                      .|++..|+...++
T Consensus       107 ~C~f~nf~~itav  119 (423)
T KOG4219|consen  107 YCRFVNFFPITAV  119 (423)
T ss_pred             eeeeccccchhhh
Confidence            9999999876553

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.62  E-value=2.3e-15  Score=112.93  Aligned_cols=86  Identities=19%  Similarity=0.284  Sum_probs=71.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccccccccc
Q psy5550          39 REFEMSAEICLLSIIFILSMGANLFVLITV--MWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCK  116 (127)
Q Consensus        39 ~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~--~~~~~~~~~~~~~l~nla~~Dl~~~~~~p~~~~~~~~~~w~~g~~~C~  116 (127)
                      .+....+++++|.+++++|++||++|++++  .+++++|+++|+|++|||++|++.++.+|+.+... .++|++|+..||
T Consensus        28 ~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~~-~~~w~fG~~lCk  106 (338)
T PHA03234         28 LKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLNR-EALFNFNQAFCQ  106 (338)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCccCchhHHH
Confidence            445667889999999999999999999844  46667789999999999999999988777766543 457999999999


Q ss_pred             cchhhhhhc
Q psy5550         117 IMPYSQMCS  125 (127)
Q Consensus       117 ~~~~~~~~~  125 (127)
                      +..++...+
T Consensus       107 ~~~~~~~~~  115 (338)
T PHA03234        107 CVLFIYHAS  115 (338)
T ss_pred             HHHHHHHHH
Confidence            998877654

>KOG4220|consensus

Probab=99.46  E-value=2.7e-15  Score=113.11  Aligned_cols=84  Identities=25%  Similarity=0.433  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccchh
Q psy5550          42 EMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPY  120 (127)
Q Consensus        42 ~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~~~  120 (127)
                      +.++++++...+.++.++||++||..+..+|++|+..|+||++||+||++.+. .+|+...+.+.|+|++|...|.+...
T Consensus        29 q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLa  108 (503)
T KOG4220|consen   29 QVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLA  108 (503)
T ss_pred             EEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHH
Confidence            33456777888899999999999999999999999999999999999999999 99999999999999999999999988


Q ss_pred             hhhhc
Q psy5550         121 SQMCS  125 (127)
Q Consensus       121 ~~~~~  125 (127)
                      +.++.
T Consensus       109 lDYva  113 (503)
T KOG4220|consen  109 LDYVA  113 (503)
T ss_pred             HHHHh
Confidence            87653

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.43  E-value=8.2e-13  Score=98.36  Aligned_cols=81  Identities=20%  Similarity=0.433  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccccccccccchhh
Q psy5550          42 EMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYS  121 (127)
Q Consensus        42 ~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~~  121 (127)
                      ...+..+++.+++++|++||+++++++.++|+ +++.|+|++|||++|++..+.+|+.+.... ++|.+|+..|++..++
T Consensus        27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~~~~lP~~i~~~~-~~w~~g~~~C~~~~~~  104 (323)
T PHA02834         27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLMLVFSFPFIIHNDL-NEWIFGEFMCKLVLGV  104 (323)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHc-CCcCCcchHHHhHHHH
Confidence            34477899999999999999999998887665 467899999999999986449998876554 5799999999998766


Q ss_pred             hhh
Q psy5550         122 QMC  124 (127)
Q Consensus       122 ~~~  124 (127)
                      ...
T Consensus       105 ~~~  107 (323)
T PHA02834        105 YFV  107 (323)
T ss_pred             HHH
Confidence            543

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.38  E-value=2.7e-12  Score=98.77  Aligned_cols=81  Identities=27%  Similarity=0.548  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccccccccccchh
Q psy5550          41 FEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPY  120 (127)
Q Consensus        41 ~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~  120 (127)
                      ....+..+++.+++++|++||.++++++.+ |++|+++|++++|||++|++..+.+|+++... .++|.+|+..||+..+
T Consensus        96 ~~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~l~lPf~i~~~-~~~W~fg~~~Ck~~~~  173 (417)
T PHA02638         96 SISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVIDFPFIIYNE-FDQWIFGDFMCKVISA  173 (417)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH-hccccccccchhhHHH
Confidence            345578889999999999999999977654 78899999999999999999866999988765 4689999999999876


Q ss_pred             hhh
Q psy5550         121 SQM  123 (127)
Q Consensus       121 ~~~  123 (127)
                      +..
T Consensus       174 l~~  176 (417)
T PHA02638        174 SYY  176 (417)
T ss_pred             HHH
Confidence            544

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.35  E-value=2.4e-12  Score=95.84  Aligned_cols=84  Identities=26%  Similarity=0.490  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccccccccccchh
Q psy5550          41 FEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPY  120 (127)
Q Consensus        41 ~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~  120 (127)
                      ....+..+++.+++++|++||+++++++.++ ++|++.|+++.|||++|++.++..|........++|.+|+..|++..+
T Consensus        38 ~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  116 (335)
T PHA03087         38 TNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMTLPFQIYYYILFQWSFGEFACKIVSG  116 (335)
T ss_pred             chhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCCCCcHHHHHHHH
Confidence            3444778889999999999999999888887 889999999999999999887777877766666789999999999888


Q ss_pred             hhhhc
Q psy5550         121 SQMCS  125 (127)
Q Consensus       121 ~~~~~  125 (127)
                      +...+
T Consensus       117 ~~~~~  121 (335)
T PHA03087        117 LYYIG  121 (335)
T ss_pred             HHHHH
Confidence            76543

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.29  E-value=2.3e-11  Score=93.44  Aligned_cols=85  Identities=20%  Similarity=0.213  Sum_probs=63.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCC-CchHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccccccccccc
Q psy5550          40 EFEMSAEICLLSIIFILSMGANLFVLITVMW-YPAL-QTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKI  117 (127)
Q Consensus        40 ~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~-~~~~-~~~~~~~l~nla~~Dl~~~~~~p~~~~~~~~~~w~~g~~~C~~  117 (127)
                      ...+.+..+++.+++++|++||++|++++.+ +|++ ++..++|++|||++|++..+.+|+.+... ...|..|...|++
T Consensus        29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l~~lP~~i~~~-~~~~~~g~~~Ck~  107 (409)
T PHA03235         29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVFVLPFIMLSN-QGLLSGSVAGCKF  107 (409)
T ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHhc-CccccCCCCeehh
Confidence            3455688999999999999999999987543 3332 35668999999999998744999887532 1223445789999


Q ss_pred             chhhhhhc
Q psy5550         118 MPYSQMCS  125 (127)
Q Consensus       118 ~~~~~~~~  125 (127)
                      ..++...+
T Consensus       108 ~~~l~~~~  115 (409)
T PHA03235        108 ASLLYYAS  115 (409)
T ss_pred             HHHHHHHH
Confidence            98876654

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.02  E-value=5e-10  Score=78.51  Aligned_cols=66  Identities=32%  Similarity=0.592  Sum_probs=58.3

Q ss_pred             HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccchhhhhhc
Q psy5550          60 ANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYSQMCS  125 (127)
Q Consensus        60 gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~~~~~~~~  125 (127)
                      ||.+++.++.++|++|++.++++.|||++|++.++ ..|........++|.++...|++..++...+
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~   67 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFS   67 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999999999999999 8888877777678999999999998876543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>KOG2087|consensus

Probab=98.21  E-value=6.5e-07  Score=67.17  Aligned_cols=84  Identities=18%  Similarity=0.207  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHh-cC-------ccccc
Q psy5550          41 FEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARV-SP-------QWPLG  111 (127)
Q Consensus        41 ~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~-~~-------~w~~g  111 (127)
                      ....++.+..++++.++++||.+|++.+...|...++..+++.|||++|+++++ ..-+..++.. .+       .|..|
T Consensus        22 lg~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg  101 (363)
T KOG2087|consen   22 LGYWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTG  101 (363)
T ss_pred             hccceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhc
Confidence            333466677788899999999999988888888778899999999999999998 4444444332 22       27655


Q ss_pred             ccccccchhhhhhc
Q psy5550         112 DVLCKIMPYSQMCS  125 (127)
Q Consensus       112 ~~~C~~~~~~~~~~  125 (127)
                       ..|++.+|+.+++
T Consensus       102 -~gC~~aGflavFA  114 (363)
T KOG2087|consen  102 -LGCPVAGFLAVFA  114 (363)
T ss_pred             -CCCchHHHHHHHH
Confidence             7899999987765

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.16  E-value=9.1e-07  Score=64.18  Aligned_cols=67  Identities=16%  Similarity=0.288  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccchhhhh
Q psy5550          55 ILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYSQM  123 (127)
Q Consensus        55 ~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~~~~~~  123 (127)
                      ++|+.||..++.++.++|++|++.++++..+|++|++... .+|..+... .+ -......|-.+.+...
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~-~~-~~i~~~~Cf~~~~~~~   69 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF-RD-HQITRSECFWQIFFYI   69 (257)
T ss_pred             EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH-hh-eeccHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999 888776443 22 2345566766555443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=97.26  E-value=0.0023  Score=45.02  Aligned_cols=53  Identities=13%  Similarity=0.088  Sum_probs=39.4

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccchhhhhh
Q psy5550          72 PALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYSQMC  124 (127)
Q Consensus        72 ~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~~~~~~~  124 (127)
                      +++|...+-++.||.++|++.++ .+...+.....+.-.-+...|..++++.-.
T Consensus        30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~   83 (201)
T PF11710_consen   30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQV   83 (201)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHH
Confidence            55567778899999999999999 555455555444444567899999997644

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=96.87  E-value=0.008  Score=44.88  Aligned_cols=77  Identities=19%  Similarity=0.284  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccchhhhh
Q psy5550          45 AEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYSQM  123 (127)
Q Consensus        45 ~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~~~~~~  123 (127)
                      ...++..+..+++++|-+.++..+++.|++|++.+-++.-++++|++..+ .......    ..-.-+...|++++++..
T Consensus         8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~----~~~~~~s~lC~~Qafliq   83 (303)
T PF05462_consen    8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLS----PSAGENSFLCQFQAFLIQ   83 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCCCCcchhhHhHHHH
Confidence            56666777788999999999999999999999999999999999999776 4432221    111234678999998765


Q ss_pred             hc
Q psy5550         124 CS  125 (127)
Q Consensus       124 ~~  125 (127)
                      ..
T Consensus        84 ~f   85 (303)
T PF05462_consen   84 FF   85 (303)
T ss_pred             Hh
Confidence            43

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=96.61  E-value=0.026  Score=42.00  Aligned_cols=74  Identities=16%  Similarity=0.216  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccc
Q psy5550          45 AEICLLSIIFILSMGANLFVLITVM---WYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIM  118 (127)
Q Consensus        45 ~~~~~~~~i~~~~i~gN~~vl~~~~---~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~  118 (127)
                      +..++..+.+++|+.||+.++.+-+   ++++.-.|.+..+.+||++.++.-. ..-......+..+.......++..
T Consensus         8 i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (303)
T PF05296_consen    8 IFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKII   85 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHH
Confidence            5677778889999999997765544   2333346899999999999999877 443333333333322333344443

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.55  E-value=0.047  Score=39.75  Aligned_cols=42  Identities=24%  Similarity=0.395  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh
Q psy5550          53 IFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL   94 (127)
Q Consensus        53 i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~   94 (127)
                      +.++|++.|.+++..+.+.+++|++-+.+..+.|++|.+...
T Consensus         3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~   44 (274)
T PF10328_consen    3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICL   44 (274)
T ss_pred             eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999887

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.53  E-value=0.024  Score=41.94  Aligned_cols=51  Identities=20%  Similarity=0.388  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHHHh-HHHHHHHHHh
Q psy5550          53 IFILSMGANLFVLITVMWYPALQT-VTNYFLLNLTAADILFCL-SIPGIMYARV  104 (127)
Q Consensus        53 i~~~~i~gN~~vl~~~~~~~~~~~-~~~~~l~nla~~Dl~~~~-~~p~~~~~~~  104 (127)
                      +.++|+++|..-+.++. +|++|+ +.|.+++.+|++|++... ..+..+....
T Consensus         6 ~~~~g~~~N~~h~~VLt-rk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~   58 (318)
T PF10324_consen    6 LSIFGLFINIFHLIVLT-RKSMRSSSINILLIGIAICDLLYMLSILIWELFFFI   58 (318)
T ss_pred             EeHHHHHHHHHHhhhcC-ChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46789999998887664 466675 899999999999999999 8887765544

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=95.38  E-value=0.12  Score=38.77  Aligned_cols=77  Identities=13%  Similarity=0.059  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccch
Q psy5550          41 FEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMP  119 (127)
Q Consensus        41 ~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~~  119 (127)
                      ..+..++..+.+.+++..+-....+.++.+++.+|.+.+-.+.-||+.|++... ..-..-...     ..|..+|+...
T Consensus        30 ~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~-----i~G~vfC~~P~  104 (313)
T PF10321_consen   30 VKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILA-----IFGAVFCSYPR  104 (313)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHH-----hcCccccCCch
Confidence            334467777777788888888888888888888889999999999999999886 322222222     23456666555


Q ss_pred             hhh
Q psy5550         120 YSQ  122 (127)
Q Consensus       120 ~~~  122 (127)
                      +..
T Consensus       105 ~~~  107 (313)
T PF10321_consen  105 FIY  107 (313)
T ss_pred             Hhh
Confidence            433

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.05  E-value=0.052  Score=39.82  Aligned_cols=51  Identities=27%  Similarity=0.289  Sum_probs=38.4

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHh--HHHHHHHHHhcCcccccccccccchhhhhh
Q psy5550          72 PALQTVTNYFLLNLTAADILFCL--SIPGIMYARVSPQWPLGDVLCKIMPYSQMC  124 (127)
Q Consensus        72 ~~~~~~~~~~l~nla~~Dl~~~~--~~p~~~~~~~~~~w~~g~~~C~~~~~~~~~  124 (127)
                      .++.+|.+..+.|||+++.+..+  .+|........ + .+++..||+..|+.=+
T Consensus         5 ~~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~-~-~~~d~gCK~v~Y~~RV   57 (265)
T PF03402_consen    5 GHRLKPIDLILIHLALANILVLLSRGIPQTMAFFGW-K-FFDDIGCKIVFYIYRV   57 (265)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc-c-cCCCceeeeeeeehHH
Confidence            34468999999999999999998  88865433222 2 4689999999887543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=91.65  E-value=0.72  Score=33.97  Aligned_cols=46  Identities=22%  Similarity=0.353  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHHHHHHh
Q psy5550          49 LLSIIFILSMGANLFVLITVMWYP-ALQTVTNYFLLNLTAADILFCL   94 (127)
Q Consensus        49 ~~~~i~~~~i~gN~~vl~~~~~~~-~~~~~~~~~l~nla~~Dl~~~~   94 (127)
                      ++.+.+.+|+..|.+.+.++.++. +.-+...+++.|-|+.|++...
T Consensus         4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~   50 (292)
T PF10317_consen    4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISII   50 (292)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778899999998886666533 3335678999999999999887

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=85.48  E-value=0.59  Score=33.10  Aligned_cols=73  Identities=23%  Similarity=0.275  Sum_probs=2.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccchhhhhh
Q psy5550          51 SIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYSQMC  124 (127)
Q Consensus        51 ~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~~~~~~~  124 (127)
                      .+-..+++++=.+++......|++|+..+....||++++++..+ .+.- ......+.-...+..|+..+.+.+.
T Consensus         8 ~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy   81 (242)
T PF00002_consen    8 YVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHY   81 (242)
T ss_dssp             HHHHH----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHH
Confidence            34444555555555555556677788778888999999988776 3222 1111111111112349888876554

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	127
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		8e-08
4dkl_A	464	Crystal Structure Of The Mu-Opioid Receptor Bound T		6e-06
4ej4_A	461	Structure Of The Delta Opioid Receptor Bound To Nal		2e-05
3oe6_A	508	Crystal Structure Of The Cxcr4 Chemokine Receptor I		1e-04
3odu_A	502	The 2.5 A Structure Of The Cxcr4 Chemokine Receptor		1e-04
3oe0_A	499	Crystal Structure Of The Cxcr4 Chemokine Receptor I		1e-04
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		4e-04
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-04

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 51  SIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPL 110
           S++F++ +  N  V+  ++ Y  ++T TN ++ NL  AD L   ++P      +   WP 
Sbjct: 30  SVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTMPFQSTVYLMNSWPF 89
Query: 111 GDVLCKIM 118
           GDVLCKI+
Sbjct: 90  GDVLCKIV 97

>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 47  ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSP 106
           + L SI+ ++ +  N  V+  ++ Y  ++T TN ++ NL  AD L   ++P      +  
Sbjct: 21  MALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMG 80
Query: 107 QWPLGDVLCKIM 118
            WP G++LCKI+
Sbjct: 81  TWPFGNILCKIV 92

>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 49  LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQW 108
           L S +  + +  N+ V+  ++ Y  L+T TN ++ NL  AD L   ++P      +   W
Sbjct: 20  LYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADALATSTLPFQSAKYLMETW 79
Query: 109 PLGDVLCK 116
           P G++LCK
Sbjct: 80  PFGELLCK 87

>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 21/118 (17%)
Query: 19  DDKDGWGPR----YFFTFYTE-FGNREFEMSAEIC---------------LLSIIFILSM 58
           DD D   P     Y    YTE  G+ +++   E C               + SIIF+  +
Sbjct: 4   DDDDAGAPEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGI 63
Query: 59  GANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCK 116
             N  V++ + +   L+++T+ + L+L+ AD+LF +++P      V+  W  G+ LCK
Sbjct: 64  VGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVA-NWYFGNFLCK 120

>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 21/118 (17%)
Query: 19  DDKDGWGPR----YFFTFYTE-FGNREFEMSAEIC---------------LLSIIFILSM 58
           DD D   P     Y    YTE  G+ +++   E C               + SIIF+  +
Sbjct: 4   DDDDAGAPEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGI 63
Query: 59  GANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCK 116
             N  V++ + +   L+++T+ + L+L+ AD+LF +++P      V+  W  G+ LCK
Sbjct: 64  VGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVA-NWYFGNFLCK 120

>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 21/118 (17%)
Query: 19  DDKDGWGPR----YFFTFYTE-FGNREFEMSAEIC---------------LLSIIFILSM 58
           DD D   P     Y    YTE  G+ +++   E C               + SIIF+  +
Sbjct: 4   DDDDAGAPEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGI 63
Query: 59  GANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCK 116
             N  V++ + +   L+++T+ + L+L+ AD+LF +++P      V+  W  G+ LCK
Sbjct: 64  VGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVA-NWYFGNFLCK 120

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 60  ANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCK 116
            N  V+  ++ +  ++T TN ++ NL  AD L  L++P      +   WP G+ LCK
Sbjct: 142 GNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCK 198

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 49  LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARV-SPQ 107
           ++S+I +  +  N+ V+  +  +  LQTVTNYF+ +L  AD++  L++     A + +  
Sbjct: 188 VMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKT 247
Query: 108 WPLGDVLCK 116
           W  G+  C+
Sbjct: 248 WTFGNFWCE 256

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	127
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	4e-19
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	9e-19
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	1e-17
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	3e-16
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	2e-14
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	4e-14
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	4e-14
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	5e-14
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	6e-14
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	7e-14
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	7e-14
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	4e-13
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	5e-12
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	5e-12
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	6e-12

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 79.3 bits (196), Expect = 9e-19
 Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 1/99 (1%)

Query: 28  YFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTA 87
              +   +F    +++       ++I + S+  N+ V+  ++ +  ++TVTNYFL+NL  
Sbjct: 17  TNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAF 76

Query: 88  ADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYSQMCS 125
           A+      +        V  +W  G   CK   +  + +
Sbjct: 77  AEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAA 115

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 76.2 bits (187), Expect = 1e-17
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 49  LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQW 108
           L SI+ ++ +  N  V+  ++ Y  ++T TN ++ NL  AD L   ++P      +   W
Sbjct: 23  LYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGTW 82

Query: 109 PLGDVLCKIMPY 120
           P G++LCKI+  
Sbjct: 83  PFGNILCKIVIS 94

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 72.2 bits (177), Expect = 3e-16
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 38  NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIP 97
           N  F       + SIIF+  +  N  V++ + +   L+++T+ + L+L+ AD+LF +++P
Sbjct: 43  NANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLP 102

Query: 98  GIMYARVSPQWPLGDVLCKIM 118
                 V+  W  G+ LCK +
Sbjct: 103 FWAVDAVA-NWYFGNFLCKAV 122

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 67.2 bits (164), Expect = 2e-14
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 48  CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVSP 106
            ++S+I +  +  N+ V+  +  +  LQTVTNYF+ +L  AD++     +P      ++ 
Sbjct: 187 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTK 246

Query: 107 QWPLGDVLCKI 117
            W  G+  C+ 
Sbjct: 247 TWTFGNFWCEF 257

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 66.7 bits (162), Expect = 4e-14
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 47  ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVS 105
           + +   + ++++  N+ V++++     LQTV NYFL +L  AD++    S+       V 
Sbjct: 27  VLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVI 86

Query: 106 PQWPLGDVLCKI 117
             WPLG V+C +
Sbjct: 87  GYWPLGPVVCDL 98

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 66.3 bits (161), Expect = 4e-14
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 48  CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVSP 106
            ++S+I +  +  N+ V+  +  +  LQTVTNYF+ +L  AD++     +P      +  
Sbjct: 45  IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK 104

Query: 107 QWPLGDVLCKI 117
            W  G+  C+ 
Sbjct: 105 MWTFGNFWCEF 115

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 66.2 bits (161), Expect = 5e-14
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 47  ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVS 105
           I +   I +L++  N+ V   V     LQ VTNYF+++L AADI    L+IP      +S
Sbjct: 35  ITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP--FAITIS 92

Query: 106 PQWPLGDVLCKIMPYSQ-MCS 125
             +      C  +     + +
Sbjct: 93  TGFCAACHGCLFIACFVLVLT 113

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 65.9 bits (160), Expect = 6e-14
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 47  ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVS 105
           I +   I +L++  N+ V   V     LQ VTNYF+++L AADI    L+IP      +S
Sbjct: 25  ITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP--FAITIS 82

Query: 106 PQWPLGDVLCKIM 118
             +      C  +
Sbjct: 83  TGFCAACHGCLFI 95

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 65.9 bits (160), Expect = 7e-14
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 49  LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIP-GIMYARVSP 106
               + +  +  N  V + V+   ALQT TNY +++L  AD+L   L +P  +       
Sbjct: 44  SYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGG 103

Query: 107 QWPLGDVLCKI 117
            W    + C +
Sbjct: 104 VWNFSRICCDV 114

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 65.5 bits (159), Expect = 7e-14
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 47  ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVS 105
           + +LS I ++++G NL VL  V     L TV N ++++L+ AD++   + +P  +   + 
Sbjct: 12  VVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLM 71

Query: 106 PQWPLGDVLCKI 117
            +W LG  LC  
Sbjct: 72  SKWSLGRPLCLF 83

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 63.2 bits (154), Expect = 4e-13
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 1/79 (1%)

Query: 48  CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS-IPGIMYARVSP 106
             + ++ +L    N   L   + +  L+T  NY LLNL  AD+          +Y  +  
Sbjct: 43  AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG 102

Query: 107 QWPLGDVLCKIMPYSQMCS 125
            +  G   C +  +     
Sbjct: 103 YFVFGPTGCNLEGFFATLG 121

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 60.3 bits (145), Expect = 5e-12
 Identities = 14/82 (17%), Positives = 32/82 (39%)

Query: 37  GNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSI 96
            ++E  +     +  +I    +  N+FVL+T+           YF+ NL  +D+L  ++ 
Sbjct: 57  ADKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAY 116

Query: 97  PGIMYARVSPQWPLGDVLCKIM 118
              +    +  + L      + 
Sbjct: 117 TANLLLSGATTYKLTPAQWFLR 138

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 60.3 bits (146), Expect = 5e-12
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 48  CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL--SIPGIMYARVS 105
             + I  I+  G N  V+       +LQT  N F++NL  +D  F L    P +  +   
Sbjct: 39  IFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFL 98

Query: 106 PQWPLGDVLCKI 117
            +W  G   CK+
Sbjct: 99  KKWIFGFAACKV 110

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 59.7 bits (145), Expect = 6e-12
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 48  CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVSP 106
            L++++ +L +  N+ V+  +     LQT+TN F+ +L  AD++   L +P      V  
Sbjct: 16  LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG 75

Query: 107 QWPLGDVLCKI 117
            W  G  LC++
Sbjct: 76  TWLWGSFLCEL 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.69
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.66
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.66
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.65
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.65
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.6
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.58
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.57
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.57
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.54
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.53
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.53
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.52
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.52
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.52
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.5
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.47
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.46
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	97.5

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.69  E-value=6.4e-17  Score=124.97  Aligned_cols=88  Identities=20%  Similarity=0.364  Sum_probs=73.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHHHHHHh-HHHHHHHHHhc--Cccccc
Q psy5550          38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQ---TVTNYFLLNLTAADILFCL-SIPGIMYARVS--PQWPLG  111 (127)
Q Consensus        38 ~~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~---~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~--~~w~~g  111 (127)
                      .+....+++.++|.+++++|++||++|++++.++|++|   +++|+|++|||++|++.++ .+|+.+...+.  +.|++|
T Consensus        27 ~~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g  106 (510)
T 4grv_A           27 TDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFG  106 (510)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhh
Confidence            34556678889999999999999999999998876544   7889999999999999999 99999887654  469999


Q ss_pred             ccccccchhhhhhc
Q psy5550         112 DVLCKIMPYSQMCS  125 (127)
Q Consensus       112 ~~~C~~~~~~~~~~  125 (127)
                      ..+|++..++..++
T Consensus       107 ~~~C~~~~~~~~~~  120 (510)
T 4grv_A          107 DAGCRGYYFLRDAC  120 (510)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999877654

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.66  E-value=1.8e-16  Score=121.91  Aligned_cols=86  Identities=24%  Similarity=0.404  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccc
Q psy5550          40 EFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIM  118 (127)
Q Consensus        40 ~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~  118 (127)
                      .....++.+++.+++++|++||+++++++.++|++|++.|+|++|||++|++.++ .+|+.+...+.++|.+|...|++.
T Consensus        37 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~  116 (500)
T 2rh1_A           37 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW  116 (500)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHH
Confidence            4445578889999999999999999999999999999999999999999999999 999999888888999999999998


Q ss_pred             hhhhhhc
Q psy5550         119 PYSQMCS  125 (127)
Q Consensus       119 ~~~~~~~  125 (127)
                      .++..++
T Consensus       117 ~~~~~~~  123 (500)
T 2rh1_A          117 TSIDVLC  123 (500)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8876543

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.66  E-value=3.5e-16  Score=112.42  Aligned_cols=86  Identities=28%  Similarity=0.556  Sum_probs=74.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccccccccccc
Q psy5550          39 REFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIM  118 (127)
Q Consensus        39 ~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~~~p~~~~~~~~~~w~~g~~~C~~~  118 (127)
                      ....+.+..++|.+++++|++||+++++++.++|++|+++|+|+.|||++|++.++.+|+.+.... ++|..|...|+..
T Consensus         7 ~~~~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~~p~~~~~~~-~~~~~~~~~c~~~   85 (296)
T 2lnl_A            7 ETLNKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKV-NGWIFGTFLCKVV   85 (296)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-SSSCCSSHHHHHH
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHhhhHHHhhcc-CCCccchhHHHHH
Confidence            344456788899999999999999999999999999999999999999999998887787776665 4699999999999


Q ss_pred             hhhhhhc
Q psy5550         119 PYSQMCS  125 (127)
Q Consensus       119 ~~~~~~~  125 (127)
                      .++..++
T Consensus        86 ~~~~~~~   92 (296)
T 2lnl_A           86 SLLKEVN   92 (296)
T ss_dssp             HHHHHHH
T ss_pred             hhhhhhh
Confidence            8876654

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.65  E-value=1.5e-15  Score=111.58  Aligned_cols=88  Identities=22%  Similarity=0.352  Sum_probs=77.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccc
Q psy5550          38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCK  116 (127)
Q Consensus        38 ~~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~  116 (127)
                      .+.....++.+++.+++++|++||+++++++.++|++|++.|++++|||++|++.++ .+|..+.....++|.+|...|+
T Consensus        27 ~~~~~~~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~  106 (364)
T 2ks9_A           27 QPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCK  106 (364)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHH
Confidence            445555566889999999999999999999999999999999999999999999998 9999888888889999999999


Q ss_pred             cchhhhhhc
Q psy5550         117 IMPYSQMCS  125 (127)
Q Consensus       117 ~~~~~~~~~  125 (127)
                      +..++..++
T Consensus       107 ~~~~~~~~~  115 (364)
T 2ks9_A          107 FHNFFPIAA  115 (364)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            988876543

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.65  E-value=1.3e-15  Score=110.91  Aligned_cols=88  Identities=19%  Similarity=0.381  Sum_probs=78.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccc
Q psy5550          38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCK  116 (127)
Q Consensus        38 ~~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~  116 (127)
                      .++....+..+++.+++++|++||+++++++.++|++|++.|++++|||++|++.++ ..|..+.....++|.+|...|+
T Consensus        33 ~~~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~  112 (349)
T 1u19_A           33 AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCN  112 (349)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHHH
Confidence            345566688889999999999999999999999999999999999999999999999 8999988888889999999999


Q ss_pred             cchhhhhhc
Q psy5550         117 IMPYSQMCS  125 (127)
Q Consensus       117 ~~~~~~~~~  125 (127)
                      +..++...+
T Consensus       113 ~~~~~~~~~  121 (349)
T 1u19_A          113 LEGFFATLG  121 (349)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988876543

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.60  E-value=3.6e-15  Score=113.57  Aligned_cols=87  Identities=26%  Similarity=0.477  Sum_probs=76.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccccccccccc
Q psy5550          38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKI  117 (127)
Q Consensus        38 ~~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~~~p~~~~~~~~~~w~~g~~~C~~  117 (127)
                      .......++.+++.+++++|++||+++++++.+++++|++.|+|++|||++|++.++.+|+.+..... +|.+|...|++
T Consensus        43 ~~~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~p~~~~~~~~-~~~~~~~~C~~  121 (502)
T 3odu_A           43 NANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVA-NWYFGNFLCKA  121 (502)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHT-CCCSHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCchhhhh
Confidence            34556668889999999999999999999999999999999999999999999996699998877664 79999999999


Q ss_pred             chhhhhhc
Q psy5550         118 MPYSQMCS  125 (127)
Q Consensus       118 ~~~~~~~~  125 (127)
                      ..++..++
T Consensus       122 ~~~~~~~~  129 (502)
T 3odu_A          122 VHVIYTVN  129 (502)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98876553

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.58  E-value=5e-15  Score=111.73  Aligned_cols=84  Identities=26%  Similarity=0.457  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccchh
Q psy5550          42 EMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPY  120 (127)
Q Consensus        42 ~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~~~  120 (127)
                      ...+..+++.+++++|++||+++++++.++|++|++.|+|++|||++|++.++ .+|..+.....+.|.+|...|++..+
T Consensus        22 ~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~  101 (467)
T 3uon_A           22 EVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLA  101 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHhHHHH
Confidence            34578888999999999999999999999999999999999999999999999 99999999988999999999999988


Q ss_pred             hhhhc
Q psy5550         121 SQMCS  125 (127)
Q Consensus       121 ~~~~~  125 (127)
                      +..++
T Consensus       102 ~~~~~  106 (467)
T 3uon_A          102 LDYVV  106 (467)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76554

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.57  E-value=2.7e-15  Score=113.73  Aligned_cols=83  Identities=23%  Similarity=0.373  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhc-Ccccccccccccchh
Q psy5550          43 MSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVS-PQWPLGDVLCKIMPY  120 (127)
Q Consensus        43 ~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~-~~w~~g~~~C~~~~~  120 (127)
                      ..++.+++.+++++|++||+++++++.++|++|++.|+|++|||++|++.++ .+|..+...+. ++|.+|...|++..+
T Consensus        38 ~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~  117 (481)
T 3pbl_A           38 HAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVT  117 (481)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhHHH
Confidence            4466778899999999999999999999999999999999999999999998 99998877766 579999999999988


Q ss_pred             hhhhc
Q psy5550         121 SQMCS  125 (127)
Q Consensus       121 ~~~~~  125 (127)
                      +..++
T Consensus       118 ~~~~~  122 (481)
T 3pbl_A          118 LDVMM  122 (481)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.57  E-value=1.1e-14  Score=109.68  Aligned_cols=85  Identities=26%  Similarity=0.499  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccccccccccchh
Q psy5550          41 FEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPY  120 (127)
Q Consensus        41 ~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~  120 (127)
                      ....++.+++.+++++|++||+++++++.+++++|++.|+|++|||++|++.++.+|+.+.....++|.+|...|++..+
T Consensus        15 ~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~p~~~~~~~~~~~~~~~~~C~~~~~   94 (464)
T 4dkl_A           15 VTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGTWPFGNILCKIVIS   94 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhHHH
Confidence            44557888999999999999999999999999999999999999999999988899999888888899999999999988


Q ss_pred             hhhhc
Q psy5550         121 SQMCS  125 (127)
Q Consensus       121 ~~~~~  125 (127)
                      +..++
T Consensus        95 ~~~~~   99 (464)
T 4dkl_A           95 IDYYN   99 (464)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76554

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.53  E-value=1.4e-14  Score=103.83  Aligned_cols=86  Identities=23%  Similarity=0.363  Sum_probs=77.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccc
Q psy5550          40 EFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIM  118 (127)
Q Consensus        40 ~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~  118 (127)
                      +....+..+++.+++++|++||+++++++.++|++|++.|++++|||++|++.++ .+|..+.....++|.+|...|++.
T Consensus         8 ~~~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~   87 (315)
T 4amj_A            8 QQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELW   87 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHHHH
Confidence            3445578888999999999999999999999999999999999999999999998 999999888888999999999998


Q ss_pred             hhhhhhc
Q psy5550         119 PYSQMCS  125 (127)
Q Consensus       119 ~~~~~~~  125 (127)
                      .++...+
T Consensus        88 ~~~~~~~   94 (315)
T 4amj_A           88 TSLDVLC   94 (315)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8876543

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.53  E-value=9.5e-15  Score=109.79  Aligned_cols=81  Identities=27%  Similarity=0.459  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccchhhhh
Q psy5550          45 AEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYSQM  123 (127)
Q Consensus        45 ~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~~~~~~  123 (127)
                      ++.+++.+++++|++||+++++++.+++++|++.|+|++|||++|++.++ .+|..+...+.++|.+|...|++..++..
T Consensus        10 ~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~   89 (452)
T 3rze_A           10 PLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDY   89 (452)
T ss_dssp             GGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHHHHHHH
Confidence            56778899999999999999999999999999999999999999999998 99999999988999999999999988765


Q ss_pred             hc
Q psy5550         124 CS  125 (127)
Q Consensus       124 ~~  125 (127)
                      ++
T Consensus        90 ~~   91 (452)
T 3rze_A           90 VA   91 (452)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.52  E-value=4.7e-14  Score=106.58  Aligned_cols=88  Identities=23%  Similarity=0.297  Sum_probs=77.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-H-HHHHHHHHhcCccccccccc
Q psy5550          38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-S-IPGIMYARVSPQWPLGDVLC  115 (127)
Q Consensus        38 ~~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~-~p~~~~~~~~~~w~~g~~~C  115 (127)
                      .......++.+++.+++++|++||+++++++.++|++|++.|++++|||++|++.++ . +|..+.....++|.++...|
T Consensus        29 ~~~~~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C  108 (448)
T 2z73_A           29 VPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAAC  108 (448)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHH
Confidence            344556678888999999999999999999999999999999999999999999988 4 89988888888999999999


Q ss_pred             ccchhhhhhc
Q psy5550         116 KIMPYSQMCS  125 (127)
Q Consensus       116 ~~~~~~~~~~  125 (127)
                      ++..++..++
T Consensus       109 ~~~~~~~~~~  118 (448)
T 2z73_A          109 KVYGFIGGIF  118 (448)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988766543

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.52  E-value=3e-14  Score=108.01  Aligned_cols=88  Identities=18%  Similarity=0.411  Sum_probs=75.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHhc-Ccccccccccc
Q psy5550          38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVS-PQWPLGDVLCK  116 (127)
Q Consensus        38 ~~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~~~p~~~~~~~~-~~w~~g~~~C~  116 (127)
                      ++.....++.+++.+++++|++||+++++++.+++++|++.|+|++|||++|++.++.+|+.+...+. ++|.+|...|+
T Consensus        15 ~~~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~~~~~~~~~~~~~~~~~~~~~C~   94 (484)
T 3vw7_A           15 TSSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKISYYFSGSDWQFGSELCR   94 (484)
T ss_dssp             TCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTSCCCSCHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhHHh
Confidence            34555668899999999999999999999999999999999999999999999997766666555554 48999999999


Q ss_pred             cchhhhhhc
Q psy5550         117 IMPYSQMCS  125 (127)
Q Consensus       117 ~~~~~~~~~  125 (127)
                      +..++..++
T Consensus        95 ~~~~~~~~~  103 (484)
T 3vw7_A           95 FVTAAFYCN  103 (484)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998876654

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.52  E-value=2.4e-14  Score=110.71  Aligned_cols=86  Identities=17%  Similarity=0.246  Sum_probs=74.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCccccccccccc
Q psy5550          39 REFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKI  117 (127)
Q Consensus        39 ~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~  117 (127)
                      +.....+..+++.+++++|++||++|++++.++|++|++.|+|++|||++|++.++ ..|..+.. ..+.|.++...|++
T Consensus        59 ~~~~~~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~~~c~~  137 (520)
T 3v2y_A           59 KENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQWFL  137 (520)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCccccch
Confidence            34444688899999999999999999999999999999999999999999999999 88877765 45679999999999


Q ss_pred             chhhhhhc
Q psy5550         118 MPYSQMCS  125 (127)
Q Consensus       118 ~~~~~~~~  125 (127)
                      ..++..++
T Consensus       138 ~~~~~~~~  145 (520)
T 3v2y_A          138 REGSMFVA  145 (520)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88776543

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.50  E-value=3.3e-14  Score=109.49  Aligned_cols=87  Identities=24%  Similarity=0.413  Sum_probs=77.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCccccccccccc
Q psy5550          39 REFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKI  117 (127)
Q Consensus        39 ~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~  117 (127)
                      +.....+..+++.+++++|++||+++++++.++|++|++.|++++|||++|++.++ .+|..+...+.++|.+|...|++
T Consensus       178 ~~~~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~  257 (514)
T 3sn6_R          178 DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEF  257 (514)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhhh
Confidence            34445578889999999999999999999999999999999999999999999999 99999998888899999999999


Q ss_pred             chhhhhhc
Q psy5550         118 MPYSQMCS  125 (127)
Q Consensus       118 ~~~~~~~~  125 (127)
                      ..++..++
T Consensus       258 ~~~l~~~~  265 (514)
T 3sn6_R          258 WTSIDVLC  265 (514)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98876553

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.47  E-value=6.8e-14  Score=105.90  Aligned_cols=81  Identities=27%  Similarity=0.300  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccchhh
Q psy5550          43 MSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYS  121 (127)
Q Consensus        43 ~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~~~~  121 (127)
                      ..++.+++.+++++|++||+++++++.+++++|++.|+|++|||++|++.++ .+|+.+....  .|.++...|++..++
T Consensus        21 ~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~--~~~~~~~~C~~~~~~   98 (488)
T 3eml_A           21 SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAACHGCLFIACF   98 (488)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHTT--CCEECHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccccchHHHHHHHH
Confidence            3477888999999999999999999999999999999999999999999998 9998887543  688899999999887


Q ss_pred             hhhc
Q psy5550         122 QMCS  125 (127)
Q Consensus       122 ~~~~  125 (127)
                      ..++
T Consensus        99 ~~~~  102 (488)
T 3eml_A           99 VLVL  102 (488)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.46  E-value=2.1e-13  Score=102.31  Aligned_cols=86  Identities=26%  Similarity=0.269  Sum_probs=74.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccc
Q psy5550          38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCK  116 (127)
Q Consensus        38 ~~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~  116 (127)
                      .+.....+..+++.+++++|++||+++++++.++|++|++.|+|++|||++|++.++ .+|..+...  ..|..+...|+
T Consensus        26 ~~~~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~--~~~~~~~~~C~  103 (447)
T 4eiy_A           26 PPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCL  103 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH--TTCEEEHHHHH
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccCccHHH
Confidence            445556688889999999999999999999999999999999999999999999998 999887754  36778899999


Q ss_pred             cchhhhhhc
Q psy5550         117 IMPYSQMCS  125 (127)
Q Consensus       117 ~~~~~~~~~  125 (127)
                      +..++..++
T Consensus       104 ~~~~~~~~~  112 (447)
T 4eiy_A          104 FIACFVLVL  112 (447)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998876543

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=97.50  E-value=7.2e-06  Score=46.43  Aligned_cols=30  Identities=23%  Similarity=0.258  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy5550          45 AEICLLSIIFILSMGANLFVLITVMWYPAL   74 (127)
Q Consensus        45 ~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~   74 (127)
                      +++++|.+++++|++||+++++++.++|--
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~~   59 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKGH   59 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEeccc
Confidence            778999999999999999999999887753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	127
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	2e-08

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 48  CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS-IPGIMYARVSP 106
             + ++ +L    N   L   + +  L+T  NY LLNL  AD+          +Y  +  
Sbjct: 42  AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG 101

Query: 107 QWPLGDVLCKIMPYSQMC 124
            +  G   C +  +    
Sbjct: 102 YFVFGPTGCNLEGFFATL 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.64

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=7.5e-16  Score=110.67  Aligned_cols=89  Identities=19%  Similarity=0.360  Sum_probs=78.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCccccccccc
Q psy5550          37 GNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLC  115 (127)
Q Consensus        37 ~~~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C  115 (127)
                      -.+.+...++++++.+++++|++||+++++++.++|++|++.|++++|||++|++.++ ..|..+.....+.|..+...|
T Consensus        31 ~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c  110 (348)
T d1u19a_          31 LAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGC  110 (348)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhh
Confidence            3455666788899999999999999999999999999999999999999999999999 899998888888899999999


Q ss_pred             ccchhhhhhc
Q psy5550         116 KIMPYSQMCS  125 (127)
Q Consensus       116 ~~~~~~~~~~  125 (127)
                      +...++...+
T Consensus       111 ~~~~~~~~~~  120 (348)
T d1u19a_         111 NLEGFFATLG  120 (348)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhhhhccccc
Confidence            9988866543