Psyllid ID: psy5588

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-
Protein Sequence
MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG
Secondary Structure (PSIPRED)
ccHHHHHccccccEEEEEEEcccccEEEEEEEEcccccEEEEEEEcEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcEEEEEEEEEEEccccccEEEEEEEEEccEcEEEEEccEEEEEEccccHHcccc
Coil and Loop (DISEMBL)
MVVELIDQlrpggrliipvgpegsaqSLEQIDKNldgtitrtplmqvvyvpltdkqhqwpg
Flexible Loop (DISEMBL)
mvvelidqlrpggrliipvgpegsaQSLEQIDKNLDGTITRTPLMQVVYVpltdkqhqwpg
Low Complexity Region (SEG)
MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG
Disordered region (IsUnstruct)
************GRLIIPV**************NLDGTITRTPLMQVVYVPLT********
Disordered Region (DISOPRED)
MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDK******
Disordered Region (DISEMBL)
MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG
Disordered Region (DISPRO)
*VVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDK******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	61	2.2.26 [Sep-21-2011]
P22061	227	Protein-L-isoaspartate(D-	no	N/A	0.901	0.242	0.690	3e-15
P15246	227	Protein-L-isoaspartate(D-	yes	N/A	0.901	0.242	0.672	4e-15
P23506	227	Protein-L-isoaspartate(D-	no	N/A	0.901	0.242	0.672	4e-15
P22062	227	Protein-L-isoaspartate(D-	yes	N/A	0.901	0.242	0.672	4e-15
Q5F3N1	228	Protein-L-isoaspartate(D-	no	N/A	0.901	0.241	0.672	4e-15
P80895	227	Protein-L-isoaspartate(D-	yes	N/A	0.901	0.242	0.672	4e-15
Q5RA89	227	Protein-L-isoaspartate(D-	no	N/A	0.901	0.242	0.672	4e-15
Q4R5H0	227	Protein-L-isoaspartate(D-	N/A	N/A	0.901	0.242	0.672	4e-15
Q92047	228	Protein-L-isoaspartate(D-	no	N/A	0.901	0.241	0.654	3e-14
Q27869	226	Protein-L-isoaspartate(D-	yes	N/A	0.852	0.230	0.576	7e-11

>sp|P22061|PIMT_HUMAN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Homo sapiens GN=PCMT1 PE=1 SV=4

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 43/55 (78%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
           LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG+I   PLM V+YVPLTDK+ QW
Sbjct: 169 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQW 223

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 7

>sp|P15246|PIMT_BOVIN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Bos taurus GN=PCMT1 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
           LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG++   PLM V+YVPLTDK+ QW
Sbjct: 169 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQW 223

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P23506|PIMT_MOUSE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Mus musculus GN=Pcmt1 PE=1 SV=3

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
           LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG++   PLM V+YVPLTDK+ QW
Sbjct: 169 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQW 223

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P22062|PIMT_RAT Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Rattus norvegicus GN=Pcmt1 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
           LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG++   PLM V+YVPLTDK+ QW
Sbjct: 169 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQW 223

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q5F3N1|PIMT_CHICK Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Gallus gallus GN=PCMT1 PE=2 SV=3

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
           LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG++   PLM V+YVPLTDK+ QW
Sbjct: 169 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLEDGSVKMKPLMGVIYVPLTDKEKQW 223

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P80895|PIMT_PIG Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa GN=PCMT1 PE=1 SV=3

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
           LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG++   PLM V+YVPLTDK+ QW
Sbjct: 169 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQW 223

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q5RA89|PIMT_PONAB Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Pongo abelii GN=PCMT1 PE=2 SV=3

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
           LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG++   PLM V+YVPLTDK+ QW
Sbjct: 169 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQW 223

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q4R5H0|PIMT_MACFA Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Macaca fascicularis GN=PCMT1 PE=2 SV=3

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
           LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG++   PLM V+YVPLTDK+ QW
Sbjct: 169 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQW 223

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q92047|PIMT_DANRE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Danio rerio GN=pcmt PE=2 SV=3

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
           L+DQL+PGGRLI+PVGP G  Q LEQ DK  DG+    PLM V+YVPLTDK  QW
Sbjct: 169 LLDQLKPGGRLILPVGPAGGNQMLEQYDKLEDGSTKMKPLMGVIYVPLTDKDKQW 223

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q27869|PIMT_DROME Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Drosophila melanogaster GN=Pcmt PE=1 SV=2

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query: 3   VELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTD 54
            ELI+QL  GGRLI+PVGP+G +Q ++Q DK+ +G +  T LM V+YVPLTD
Sbjct: 172 TELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPLTD 223

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
242014348	287	protein-L-isoaspartate O-methyltransfera	0.934	0.198	0.771	5e-19
41152134	228	l-isoaspartyl protein carboxyl methyltra	0.934	0.25	0.719	3e-17
241566262	277	protein-L-isoaspartate(D-aspartate) O-me	0.950	0.209	0.706	3e-16
318102097	249	l-isoaspartate(d-aspartate) o-methyltran	0.934	0.228	0.666	5e-16
427781597	232	Putative protein-l-isoaspartated-asparta	1.0	0.262	0.672	5e-16
432936867	249	PREDICTED: protein-L-isoaspartate(D-aspa	0.934	0.228	0.684	2e-15
390345040	296	PREDICTED: protein-L-isoaspartate(D-aspa	0.934	0.192	0.684	4e-15
226443368	249	Protein-L-isoaspartateD-aspartate O-meth	0.934	0.228	0.649	4e-15
348531162	246	PREDICTED: protein-L-isoaspartate(D-aspa	0.934	0.231	0.631	5e-15
321473043	227	hypothetical protein DAPPUDRAFT_47356 [D	0.934	0.251	0.666	6e-15

>gi|242014348|ref|XP_002427853.1| protein-L-isoaspartate O-methyltransferase, putative [Pediculus humanus corporis] gi|212512322|gb|EEB15115.1| protein-L-isoaspartate O-methyltransferase, putative [Pediculus humanus corporis]

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/57 (77%), Positives = 50/57 (87%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG 61
           LIDQL+PGGRLI+P+GPEG  Q+LEQIDK  DG+ TRTPLM VVYVPLTDK+ QWPG
Sbjct: 169 LIDQLKPGGRLIVPIGPEGGNQNLEQIDKKADGSFTRTPLMGVVYVPLTDKEAQWPG 225

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|41152134|ref|NP_957062.1| l-isoaspartyl protein carboxyl methyltransferase, like [Danio rerio] gi|37589722|gb|AAH59599.1| L-isoaspartyl protein carboxyl methyltransferase, like [Danio rerio]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/57 (71%), Positives = 48/57 (84%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG 61
           L++QL+PGGRL++PVGPEG +Q LEQ D+  DGT  R PLM VVYVPLTDKQHQWPG
Sbjct: 169 LLEQLKPGGRLVLPVGPEGGSQVLEQYDRQSDGTFLRKPLMGVVYVPLTDKQHQWPG 225

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|241566262|ref|XP_002402129.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase, putative [Ixodes scapularis] gi|215499989|gb|EEC09483.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase, putative [Ixodes scapularis]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 49/58 (84%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG 61
           +LI+QL+PGGRLI PVGP G +Q+LEQ+DK  DGT+ RT LM VVYVPLTDK+ QWPG
Sbjct: 188 QLIEQLKPGGRLICPVGPAGQSQTLEQVDKLQDGTVKRTSLMGVVYVPLTDKEAQWPG 245

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|318102097|ref|NP_001188104.1| l-isoaspartate(d-aspartate) o-methyltransferase precursor [Ictalurus punctatus] gi|308322677|gb|ADO28476.1| l-isoaspartate(d-aspartate) o-methyltransferase [Ictalurus punctatus]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 46/57 (80%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG 61
           L+DQL+PGGRL++PVGPEG +Q LEQ D+  DGT  +  LM VVYVPLTD+ HQWPG
Sbjct: 190 LLDQLKPGGRLVLPVGPEGGSQVLEQYDRQSDGTFVKKALMGVVYVPLTDRHHQWPG 246

Source: Ictalurus punctatus

Species: Ictalurus punctatus

Genus: Ictalurus

Family: Ictaluridae

Order: Siluriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|427781597|gb|JAA56250.1| Putative protein-l-isoaspartated-aspartate o-methyltransferase [Rhipicephalus pulchellus]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 50/61 (81%)

Query: 1   MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWP 60
           M  +L++QL+PGGRLI PVGP G++Q+LEQ+DK  DGT+ RT LM VVYVPLTDK  QWP
Sbjct: 165 MPKKLVEQLKPGGRLICPVGPAGASQTLEQVDKLEDGTVRRTSLMGVVYVPLTDKDSQWP 224

Query: 61  G 61
           G
Sbjct: 225 G 225

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432936867|ref|XP_004082318.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Oryzias latipes]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/57 (68%), Positives = 46/57 (80%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG 61
           L++QL+PGGRLI+PVGPEG  Q LEQ D+  DGT T+  LM VVYVPLTDK+ QWPG
Sbjct: 190 LLEQLKPGGRLILPVGPEGGNQVLEQYDRQNDGTFTKKALMGVVYVPLTDKRRQWPG 246

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390345040|ref|XP_786523.3| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Strongylocentrotus purpuratus]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG 61
           LI+QL+PGGRLIIPVGP+G+AQ+LEQ DK  +G +T+  LM VVYVPLT K+ QWPG
Sbjct: 237 LIEQLKPGGRLIIPVGPQGAAQNLEQYDKTPEGQVTKKTLMGVVYVPLTGKEQQWPG 293

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|226443368|ref|NP_001140111.1| Protein-L-isoaspartateD-aspartate O-methyltransferase precursor [Salmo salar] gi|221222218|gb|ACM09770.1| Protein-L-isoaspartateD-aspartate O-methyltransferase [Salmo salar]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 46/57 (80%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG 61
           L+DQL+PGGRL++PVGP+G +Q LEQ D+  DGT  R  LM V+YVPLTDK+ QWPG
Sbjct: 190 LLDQLKPGGRLVLPVGPDGGSQVLEQYDRQSDGTFIRKALMGVIYVPLTDKRRQWPG 246

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348531162|ref|XP_003453079.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Oreochromis niloticus]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 47/57 (82%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG 61
           L++QL+PGGRL++PVGP+G +Q LEQ D+  DG+  +  LM VVYVPLTDK+HQWPG
Sbjct: 190 LLEQLKPGGRLVLPVGPDGGSQVLEQYDRQSDGSFLKKALMGVVYVPLTDKRHQWPG 246

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321473043|gb|EFX84011.1| hypothetical protein DAPPUDRAFT_47356 [Daphnia pulex]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 44/57 (77%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWP 60
           EL+ QL+PGGRL++PVGPEG  QSLEQIDK  DG+     LM V+YVPLTDK  QWP
Sbjct: 170 ELMAQLKPGGRLVVPVGPEGGNQSLEQIDKRKDGSFEHKSLMGVIYVPLTDKDQQWP 226

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
ZFIN|ZDB-GENE-040426-1738	249	pcmtl "l-isoaspartyl protein c	0.934	0.228	0.719	1.9e-19
UNIPROTKB|E1BXJ0	228	LOC423008 "Protein-L-isoaspart	0.934	0.25	0.649	4.7e-16
UNIPROTKB|B7Z972	192	PCMT1 "Protein-L-isoaspartate	0.901	0.286	0.690	6e-16
UNIPROTKB|H7BY58	286	PCMT1 "Protein-L-isoaspartate	0.901	0.192	0.690	6e-16
UNIPROTKB|J3KP72	285	PCMT1 "Protein-L-isoaspartate	0.901	0.192	0.690	6e-16
UNIPROTKB|P22061	227	PCMT1 "Protein-L-isoaspartate(	0.901	0.242	0.690	6e-16
UNIPROTKB|G3MZZ6	228	PCMT1 "Protein-L-isoaspartate	0.901	0.241	0.672	7.7e-16
UNIPROTKB|P15246	227	PCMT1 "Protein-L-isoaspartate(	0.901	0.242	0.672	7.7e-16
UNIPROTKB|E2R3G3	286	PCMT1 "Protein-L-isoaspartate	0.901	0.192	0.672	7.7e-16
UNIPROTKB|J9JIK8	208	PCMT1 "Protein-L-isoaspartate	0.901	0.264	0.672	7.7e-16

ZFIN|ZDB-GENE-040426-1738 pcmtl "l-isoaspartyl protein carboxyl methyltransferase, like" [Danio rerio (taxid:7955)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 41/57 (71%), Positives = 48/57 (84%)

Query:     5 LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG 61
             L++QL+PGGRL++PVGPEG +Q LEQ D+  DGT  R PLM VVYVPLTDKQHQWPG
Sbjct:   190 LLEQLKPGGRLVLPVGPEGGSQVLEQYDRQSDGTFLRKPLMGVVYVPLTDKQHQWPG 246

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|E1BXJ0 LOC423008 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 37/57 (64%), Positives = 45/57 (78%)

Query:     4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWP 60
             EL+++L+PGGRLI+PVGPEG+ Q L Q DK  DG I  T LM V+YVPLTDK+ QWP
Sbjct:   168 ELLNELKPGGRLILPVGPEGANQVLMQYDKTSDGQIIETQLMGVIYVPLTDKEKQWP 224

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|B7Z972 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 38/55 (69%), Positives = 43/55 (78%)

Query:     5 LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
             LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG+I   PLM V+YVPLTDK+ QW
Sbjct:   134 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQW 188

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|H7BY58 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 38/55 (69%), Positives = 43/55 (78%)

Query:     5 LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
             LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG+I   PLM V+YVPLTDK+ QW
Sbjct:   227 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQW 281

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|J3KP72 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 38/55 (69%), Positives = 43/55 (78%)

Query:     5 LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
             LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG+I   PLM V+YVPLTDK+ QW
Sbjct:   227 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQW 281

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0046498 "S-adenosylhomocysteine metabolic process" evidence=IEA

GO:0046500 "S-adenosylmethionine metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|P22061 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 38/55 (69%), Positives = 43/55 (78%)

Query:     5 LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
             LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG+I   PLM V+YVPLTDK+ QW
Sbjct:   169 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQW 223

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=TAS

GO:0030091 "protein repair" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006479 "protein methylation" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|G3MZZ6 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Bos taurus (taxid:9913)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query:     5 LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
             LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG++   PLM V+YVPLTDK+ QW
Sbjct:   169 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQW 223

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|P15246 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Bos taurus (taxid:9913)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query:     5 LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
             LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG++   PLM V+YVPLTDK+ QW
Sbjct:   169 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQW 223

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|E2R3G3 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Canis lupus familiaris (taxid:9615)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query:     5 LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
             LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG++   PLM V+YVPLTDK+ QW
Sbjct:   227 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQW 281

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|J9JIK8 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Sus scrofa (taxid:9823)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query:     5 LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
             LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG++   PLM V+YVPLTDK+ QW
Sbjct:   150 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQW 204

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42539	PIMT_ARATH	2, ., 1, ., 1, ., 7, 7	0.5087	0.9016	0.2391	yes	N/A
P15246	PIMT_BOVIN	2, ., 1, ., 1, ., 7, 7	0.6727	0.9016	0.2422	yes	N/A
B4SR93	PIMT_STRM5	2, ., 1, ., 1, ., 7, 7	0.5416	0.7704	0.2088	yes	N/A
P80895	PIMT_PIG	2, ., 1, ., 1, ., 7, 7	0.6727	0.9016	0.2422	yes	N/A
P22062	PIMT_RAT	2, ., 1, ., 1, ., 7, 7	0.6727	0.9016	0.2422	yes	N/A
Q27869	PIMT_DROME	2, ., 1, ., 1, ., 7, 7	0.5769	0.8524	0.2300	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!
4th Layer	2.1.1.77	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	61
pfam01135	210	pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat	2e-15
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	5e-10
PRK00312	212	PRK00312, pcm, protein-L-isoaspartate O-methyltran	2e-08
TIGR00080	215	TIGR00080, pimt, protein-L-isoaspartate(D-aspartat	2e-07
PRK13942	212	PRK13942, PRK13942, protein-L-isoaspartate O-methy	4e-05
PRK13944	205	PRK13944, PRK13944, protein-L-isoaspartate O-methy	0.002

>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

 Score = 65.9 bits (161), Expect = 2e-15
 Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDK 55
            LIDQL+ GGRL+IPVGP G+ Q L+Q DK  DG++    L  V +VPLTD+
Sbjct: 158 ALIDQLKEGGRLVIPVGPNGN-QVLQQFDKRNDGSVVIKDLEGVRFVPLTDR 208

Length = 210

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 51.9 bits (125), Expect = 5e-10
 Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
           L+DQL+PGGRL+IPVG    AQ L +I K+ DG   R  L  V +VPL      +
Sbjct: 155 LLDQLKPGGRLVIPVGSGP-AQRLLRITKDGDGNFERRDLFNVRFVPLVGG-DGF 207

Length = 209

>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed

 Score = 47.5 bits (114), Expect = 2e-08
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTD 54
            L++QL+ GG L+ PVG E   Q L ++ K   G   R  L +V +VPL  
Sbjct: 160 ALLEQLKEGGILVAPVGGEEQ-QLLTRVRKR-GGRFEREVLEEVRFVPLVK 208

Length = 212

>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase

 Score = 44.4 bits (105), Expect = 2e-07
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
           LIDQL+ GG L++PVG     Q L++ +K   G I    +  V +VPL   +   
Sbjct: 163 LIDQLKEGGILVMPVGEY--LQVLKRAEK-RGGEIIIKDVEPVAFVPLVGGEGFQ 214

This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215

>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 38.5 bits (90), Expect = 4e-05
 Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 3/51 (5%)

Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDK 55
           LI+QL+ GG ++IPVG    +Q L +++K+ +G I +  L +V +VPL  K
Sbjct: 162 LIEQLKDGGIMVIPVG--SYSQELIRVEKD-NGKIIKKKLGEVAFVPLIGK 209

Length = 212

>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 33.6 bits (77), Expect = 0.002
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPL 52
            L+ QL+ GG L+IPV  EG  Q L ++ K  +  + +  +  V++VPL
Sbjct: 158 ALVRQLKDGGVLVIPV-EEGVGQVLYKVVKRGEK-VEKRAITYVLFVPL 204

Length = 205

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	61
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.72
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.66
KOG1661|consensus	237		99.37
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.32
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.32
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.28
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.06
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.02
PF09857	85	DUF2084: Uncharacterized protein conserved in bact	85.55
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	85.39
PRK13687	85	hypothetical protein; Provisional	85.06

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=3.1e-17  Score=102.23  Aligned_cols=55  Identities=47%  Similarity=0.787  Sum_probs=51.3

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEeccCCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQ   56 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~~   56 (61)
                      +|++|++||++|||||+|+|.. ..|++++++|++++++..+.+++|+|+||.+..
T Consensus       151 vP~~Ll~QL~~gGrlv~PvG~~-~~q~l~~~~k~~~~~~~~~~l~~v~~vPl~~~~  205 (209)
T COG2518         151 VPEALLDQLKPGGRLVIPVGSG-PAQRLLRITKDGDGNFERRDLFNVRFVPLVGGD  205 (209)
T ss_pred             CCHHHHHhcccCCEEEEEEccC-CcEEEEEEEEcCCCcEEEeeeccceeeecCCcc
Confidence            6999999999999999999954 789999999998889999999999999999955

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.66  E-value=3.1e-16  Score=97.49  Aligned_cols=55  Identities=42%  Similarity=0.787  Sum_probs=45.8

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEeccCCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQ   56 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~~   56 (61)
                      +|++|++||++|||||+|++. +..|.+++++|.+++.++.+.+++|+|+||.+.+
T Consensus       154 ip~~l~~qL~~gGrLV~pi~~-~~~~~l~~~~k~~~g~~~~~~~~~~~fvpl~~~~  208 (209)
T PF01135_consen  154 IPEALLEQLKPGGRLVAPIGQ-GGSQRLVRITKKGDGEFSREELFPVRFVPLVGGE  208 (209)
T ss_dssp             --HHHHHTEEEEEEEEEEESS-SSSEEEEEEEEETTTEEEEEEEEEE---B-BSCC
T ss_pred             HHHHHHHhcCCCcEEEEEEcc-CCceEEEEEEEeCCCcEEEEEEeeEEEEeccCCC
Confidence            689999999999999999998 4789999999997789999999999999999864

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>KOG1661|consensus

Probab=99.37  E-value=2.1e-12  Score=81.16  Aligned_cols=60  Identities=55%  Similarity=0.873  Sum_probs=55.0

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEeccCCCCCCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWP   60 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~~~~~~   60 (61)
                      +|++|++||++||||++|+++.+..|.+..++|..+|....+.+|.+++|||.....+|.
T Consensus       175 ~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~~~~f~v~yvPlt~~~~q~~  234 (237)
T KOG1661|consen  175 LPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKLRTLFSVRYVPLTSRESQPS  234 (237)
T ss_pred             cHHHHHHhhccCCeEEEeecccCceeEEEeecccccCceeeeEeeceEEEeccccccccC
Confidence            589999999999999999998667788999999888999999999999999999887775

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.32  E-value=1.4e-11  Score=75.96  Aligned_cols=56  Identities=36%  Similarity=0.553  Sum_probs=50.6

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEeccCCCCCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW   59 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~~~~~   59 (61)
                      +|+.+.++|++||+|++|++.  ..+++.+++|. ++.|..+.+++|.|+||.+++++|
T Consensus       159 ~~~~~~~~L~~gG~lv~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~  214 (215)
T TIGR00080       159 IPEALIDQLKEGGILVMPVGE--YLQVLKRAEKR-GGEIIIKDVEPVAFVPLVGGEGFQ  214 (215)
T ss_pred             ccHHHHHhcCcCcEEEEEEcC--CceEEEEEEEe-CCEEEEEEeeeEEEEeCCCCccCC
Confidence            578899999999999999986  57899999997 567999999999999999998777

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.32  E-value=1e-11  Score=76.75  Aligned_cols=54  Identities=39%  Similarity=0.705  Sum_probs=48.3

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEeccCCCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQH   57 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~~~   57 (61)
                      +|+.|.+||++||+||+|++..  .+.+++++|. ++.++.+.+++|+|+||.+...
T Consensus       158 ~~~~l~~~LkpgG~lvi~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~  211 (212)
T PRK13942        158 IPKPLIEQLKDGGIMVIPVGSY--SQELIRVEKD-NGKIIKKKLGEVAFVPLIGKNG  211 (212)
T ss_pred             chHHHHHhhCCCcEEEEEEcCC--CcEEEEEEEE-CCEEEEEEeccEEEEecccCCC
Confidence            5789999999999999999863  6899999997 4679999999999999998764

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.28  E-value=2e-11  Score=75.02  Aligned_cols=51  Identities=31%  Similarity=0.556  Sum_probs=45.2

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEecc
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLT   53 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~   53 (61)
                      +|+.|++||++||+|++|++.. ..|.+++++|. ++.++.+.++.|+||||.
T Consensus       155 ~~~~l~~~L~~gG~lvi~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~f~pl~  205 (205)
T PRK13944        155 IPSALVRQLKDGGVLVIPVEEG-VGQVLYKVVKR-GEKVEKRAITYVLFVPLR  205 (205)
T ss_pred             hhHHHHHhcCcCcEEEEEEcCC-CceEEEEEEEe-CCEEEEEEeceEEEEecC
Confidence            4789999999999999999865 56889999997 457999999999999985

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.06  E-value=1.3e-09  Score=66.86  Aligned_cols=54  Identities=37%  Similarity=0.634  Sum_probs=47.2

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEeccCCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQ   56 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~~   56 (61)
                      +|+.+.++|++||+|+++++.. ..+.+.+++|. ++.+..+.+++|+|+||.++.
T Consensus       157 ~~~~l~~~L~~gG~lv~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~  210 (212)
T PRK00312        157 IPRALLEQLKEGGILVAPVGGE-EQQLLTRVRKR-GGRFEREVLEEVRFVPLVKGE  210 (212)
T ss_pred             hhHHHHHhcCCCcEEEEEEcCC-CceEEEEEEEc-CCeEEEEEEccEEEEecCCCC
Confidence            4678999999999999999944 67889999996 667999999999999999765

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.02  E-value=2.5e-05  Score=51.45  Aligned_cols=55  Identities=18%  Similarity=0.309  Sum_probs=43.7

Q ss_pred             CcHhHHhcccCCcEEEEEeeCC-CCceEEEEEEECCCCcEEEEEeeeEEEEeccCCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPE-GSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQ   56 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~-~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~~   56 (61)
                      +|+.++++|++||++++|+... ...+...+++|. ++.+....+++++|++..|.-
T Consensus       162 ip~~~~~~LkpgG~Lvv~~~~~l~~~~~~~~~~r~-~~~~~~~~~~~~~~l~~~G~l  217 (322)
T PRK13943        162 VPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK-DPYLVGNYKLETRFIKAGGNL  217 (322)
T ss_pred             hHHHHHHhcCCCCEEEEEeCCccCCCCceEEEEec-CCCceEEEEEEeeEEcccchH
Confidence            4778999999999999998752 134667777887 456999999999999986643

>PF09857 DUF2084: Uncharacterized protein conserved in bacteria (DUF2084); InterPro: IPR018654 This domain is found in various hypothetical bacterial proteins that have no known function

Probab=85.55  E-value=2.3  Score=23.42  Aligned_cols=31  Identities=19%  Similarity=0.355  Sum_probs=25.6

Q ss_pred             hHHhcccCCcEEEEEeeCCCCceEEEEEEEC
Q psy5588           4 ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKN   34 (61)
Q Consensus         4 ~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~   34 (61)
                      ..+.-|+.||++..--.+.+....+..+||+
T Consensus         9 R~LHvLAqGG~I~~~rd~~gri~~v~C~TRe   39 (85)
T PF09857_consen    9 RVLHVLAQGGRIRHERDDSGRITAVECYTRE   39 (85)
T ss_pred             HHHHHHhcCCeEEEEECCCCCEEEEEEEccC
Confidence            4577899999999998877667788888885

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=85.39  E-value=0.5  Score=29.44  Aligned_cols=19  Identities=32%  Similarity=0.725  Sum_probs=15.8

Q ss_pred             CcHhHHhcccCCcEEEEEe
Q psy5588           1 MVVELIDQLRPGGRLIIPV   19 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pv   19 (61)
                      |.++..+.|++|||||+=.
T Consensus       117 ile~~~~~l~~ggrlV~na  135 (187)
T COG2242         117 ILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             HHHHHHHHcCcCCeEEEEe
Confidence            3567889999999999954

>PRK13687 hypothetical protein; Provisional

Probab=85.06  E-value=2.4  Score=23.28  Aligned_cols=32  Identities=19%  Similarity=0.293  Sum_probs=26.1

Q ss_pred             HhHHhcccCCcEEEEEeeCCCCceEEEEEEEC
Q psy5588           3 VELIDQLRPGGRLIIPVGPEGSAQSLEQIDKN   34 (61)
Q Consensus         3 ~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~   34 (61)
                      +..+.-|+.|||+..--.+.+....+..+||+
T Consensus         8 QRvLHvLAqGGrI~~~rd~~gri~~v~C~TRe   39 (85)
T PRK13687          8 QRTLHVLAQGGRIEHERDDSGRITAVECYTRE   39 (85)
T ss_pred             HHHHHHHhcCCeEEEEECCCCcEEEEEEEccC
Confidence            34577899999999998877667888888885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	61
1i1n_A	226	Human Protein L-Isoaspartate O-Methyltransferase Wi		2e-16
1r18_A	227	Drosophila Protein Isoaspartyl Methyltransferase Wi		1e-10

>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S- Adenosyl Homocysteine Length = 226

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 43/55 (78%)
Query: 5   LIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
           LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG+I   PLM V+YVPLTDK+ QW
Sbjct: 168 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQW 222

>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With S-Adenosyl-L- Homocysteine Length = 227

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 3   VELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPL 52
            ELI+QL  GGRLI+PVGP+G +Q ++Q DK+ +G +  T LM V+YVPL
Sbjct: 178 TELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	61
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	6e-24
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	5e-20
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	4e-19
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	3e-16
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	1e-15
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	1e-15
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	2e-13
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	4e-12

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226

 Score = 88.0 bits (219), Expect = 6e-24
 Identities = 38/56 (67%), Positives = 43/56 (76%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW 59
            LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG+I   PLM V+YVPLTDK+ QW
Sbjct: 167 ALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQW 222

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227

 Score = 77.7 bits (192), Expect = 5e-20
 Identities = 28/49 (57%), Positives = 38/49 (77%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPL 52
           ELI+QL  GGRLI+PVGP+G +Q ++Q DK+ +G +  T LM V+YVPL
Sbjct: 179 ELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 227

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score = 75.7 bits (187), Expect = 4e-19
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWP 60
            LI+QL+ GG+LIIPVG     Q L ++ K  DG I       V +VPL  + + W 
Sbjct: 174 PLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDG-IKIKNHGGVAFVPLIGE-YGWK 228

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227

 Score = 68.0 bits (167), Expect = 3e-16
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPL 52
            L+D L   G+LIIP+  + + Q L +I K  +G I +  L  V +V L
Sbjct: 178 ILVDLLAENGKLIIPIEEDYT-QVLYEITKK-NGKIIKDRLFDVCFVSL 224

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317

 Score = 67.5 bits (165), Expect = 1e-15
 Identities = 10/53 (18%), Positives = 22/53 (41%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQ 56
               QL+ GGR+I+P+  + S +    + K  D  +     ++  ++      
Sbjct: 160 TWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGGNL 212

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215

 Score = 66.0 bits (162), Expect = 1e-15
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG 61
            LI QL+ GG+L++PVG     Q L   +K  D  I       V +VPL  K   + G
Sbjct: 162 PLIRQLKDGGKLLMPVGR--YLQRLVLAEKRGDE-IIIKDCGPVAFVPLVGK-EGFQG 215

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score = 60.3 bits (147), Expect = 2e-13
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWP 60
           +  +QL+ GG +I+P+G     Q L ++ K  +   +   L +V++  +    + + 
Sbjct: 150 KPYEQLKEGGIMILPIGVGRV-QKLYKVIKKGNS-PSLENLGEVMFGRIGGL-YGFY 203

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score = 56.8 bits (138), Expect = 4e-12
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLT 53
            L+ QL  GG L++PVG E   Q L+++ +   G      +  V +VPL 
Sbjct: 159 ALMTQLDEGGILVLPVGEEH--QYLKRVRRR-GGEFIIDTVEAVRFVPLV 205

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	61
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.15
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.95
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.91
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.89
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.87
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.78
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.01
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.36
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	81.5

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.15  E-value=8e-11  Score=70.93  Aligned_cols=52  Identities=54%  Similarity=0.935  Sum_probs=46.6

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEec
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPL   52 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL   52 (61)
                      +++.+.++|++||+|+++++.....+.+.+++|..++.|+.+.+++|+|+||
T Consensus       176 ~~~~~~~~LkpgG~lvi~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~p~  227 (227)
T 1r18_A          176 TPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL  227 (227)
T ss_dssp             CCHHHHHTEEEEEEEEEEESCSSSCEEEEEEEECTTSCEEEEEEEEECCCCC
T ss_pred             HHHHHHHHhcCCCEEEEEEecCCCceEEEEEEEcCCCcEEEEEeccEEEeeC
Confidence            4678999999999999999875467999999997778899999999999997

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.95  E-value=2e-09  Score=65.19  Aligned_cols=58  Identities=34%  Similarity=0.422  Sum_probs=49.2

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEeccCCCCCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW   59 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~~~~~   59 (61)
                      +++.+.++|++||+|+++++.....+.+.+++|. ++.|..+.++++.|+||++....|
T Consensus       171 ~~~~~~~~L~pgG~lvi~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~f~p~~~~~~~~  228 (235)
T 1jg1_A          171 IPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKT-KDGIKIKNHGGVAFVPLIGEYGWK  228 (235)
T ss_dssp             CCHHHHHTEEEEEEEEEEECSSSSCEEEEEEEEE-TTEEEEEEEEEECCCBCBSTTSBC
T ss_pred             HHHHHHHhcCCCcEEEEEEecCCCccEEEEEEEe-CCeEEEEEeccEEEEEccCCCcch
Confidence            4678899999999999999876333899999996 667999999999999999887544

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.91  E-value=1.6e-09  Score=64.94  Aligned_cols=52  Identities=35%  Similarity=0.573  Sum_probs=45.2

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEeccC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTD   54 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~   54 (61)
                      +++.+.++|++||+|+++++.. ..+.+.+++| .++.|..+.+++|+|+||++
T Consensus       175 ~~~~~~~~LkpgG~lv~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~pl~~  226 (227)
T 2pbf_A          175 LPEILVDLLAENGKLIIPIEED-YTQVLYEITK-KNGKIIKDRLFDVCFVSLKK  226 (227)
T ss_dssp             CCHHHHHHEEEEEEEEEEEEET-TEEEEEEEEC-SCC-CEEEEEEEECCCBCCC
T ss_pred             HHHHHHHhcCCCcEEEEEEccC-CceEEEEEEE-eCCeEEEEEeccEEEEeccC
Confidence            4678899999999999999874 5789999999 47789999999999999986

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.89  E-value=1.6e-09  Score=64.85  Aligned_cols=59  Identities=64%  Similarity=1.083  Sum_probs=49.4

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEeccCCCCCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQW   59 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~~~~~   59 (61)
                      +++.+.++|++||+|++++......+.+..++|..++.|+.+.+++|+|+|+.+...+|
T Consensus       164 ~~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~~~  222 (226)
T 1i1n_A          164 VPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQW  222 (226)
T ss_dssp             CCHHHHHTEEEEEEEEEEESCTTSCEEEEEEEECTTSCEEEEEEEEECCCBCCCHHHHC
T ss_pred             HHHHHHHhcCCCcEEEEEEecCCCceEEEEEEEcCCCcEEEEEcCceEEEeccCCcccc
Confidence            45788999999999999998754567788888876778999999999999999874344

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.87  E-value=3.2e-09  Score=62.78  Aligned_cols=54  Identities=30%  Similarity=0.548  Sum_probs=47.2

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEeccCCCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQH   57 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~~~   57 (61)
                      +|+.+.++|++||+|+++++.  +.+.+.+++|. ++.|..+.+++|+|+||.++..
T Consensus       156 ~~~~~~~~L~pgG~lv~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~f~pl~~~~~  209 (210)
T 3lbf_A          156 IPTALMTQLDEGGILVLPVGE--EHQYLKRVRRR-GGEFIIDTVEAVRFVPLVKGEL  209 (210)
T ss_dssp             CCTHHHHTEEEEEEEEEEECS--SSCEEEEEEEE-TTEEEEEEEEECCCCBCCCSSC
T ss_pred             hhHHHHHhcccCcEEEEEEcC--CceEEEEEEEc-CCeEEEEEeccEEEEEccCccC
Confidence            467899999999999999987  46888899997 5679999999999999998753

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.78  E-value=1.7e-08  Score=59.89  Aligned_cols=57  Identities=35%  Similarity=0.545  Sum_probs=49.4

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEeccCCCCCCCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWPG   61 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~~~~~~~   61 (61)
                      +++.+.++|++||+|++.+... . +.+..++|. ++.|..+.++++.|+|+.+.. .|.|
T Consensus       159 ~~~~~~~~L~pgG~lv~~~~~~-~-~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~-~~~~  215 (215)
T 2yxe_A          159 IPEPLIRQLKDGGKLLMPVGRY-L-QRLVLAEKR-GDEIIIKDCGPVAFVPLVGKE-GFQG  215 (215)
T ss_dssp             CCHHHHHTEEEEEEEEEEESSS-S-EEEEEEEEE-TTEEEEEEEEEECCCBCBSTT-SBCC
T ss_pred             HHHHHHHHcCCCcEEEEEECCC-C-cEEEEEEEe-CCEEEEEEeccEEEEeccccc-cCCC
Confidence            3578899999999999999876 5 889999987 457999999999999999886 5876

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.01  E-value=1.6e-05  Score=47.29  Aligned_cols=58  Identities=21%  Similarity=0.355  Sum_probs=47.2

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEeccCCCCCCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWP   60 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~~~~~~   60 (61)
                      +++.+.++|++||+|++..... ..+.+..+.+. ++.+..+.++.+.|.|+....+.|.
T Consensus       147 ~~~~~~~~L~pgG~l~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gf~~  204 (231)
T 1vbf_A          147 LLCKPYEQLKEGGIMILPIGVG-RVQKLYKVIKK-GNSPSLENLGEVMFGRIGGLYGFYD  204 (231)
T ss_dssp             CCHHHHHTEEEEEEEEEEECSS-SSEEEEEEECC-TTSCEEEEEEEECCCBCCSTTSCSS
T ss_pred             HHHHHHHHcCCCcEEEEEEcCC-CccEEEEEEEc-CCeeEEEEeccEEEEEcCCccchhh
Confidence            4577899999999999999875 55777777775 5568999999999999988765553

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.36  E-value=0.00018  Score=45.24  Aligned_cols=54  Identities=17%  Similarity=0.246  Sum_probs=42.5

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCC-CceEEEEEEECCCCcEEEEEeeeEEEEeccCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEG-SAQSLEQIDKNLDGTITRTPLMQVVYVPLTDK   55 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~-~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~   55 (61)
                      +++.+.++|+|||+|++.+.... ..+.+..+++.+ +.|..+.++++.|.|+.+.
T Consensus       157 ~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~  211 (317)
T 1dl5_A          157 VPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKD-PYLVGNYKLETRFITAGGN  211 (317)
T ss_dssp             CCHHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEET-TEEEEEEEEECCCCBCCGG
T ss_pred             HHHHHHHhcCCCcEEEEEECCCCcccceEEEEEEeC-CcEEEEEeccEEEEEccCc
Confidence            35678999999999999987541 136777777763 4799999999999998754

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=81.50  E-value=0.52  Score=30.09  Aligned_cols=20  Identities=10%  Similarity=0.057  Sum_probs=16.3

Q ss_pred             cHhHHhcccCCcEEEEEeeC
Q psy5588           2 VVELIDQLRPGGRLIIPVGP   21 (61)
Q Consensus         2 P~~l~~QL~~gGrLV~pvg~   21 (61)
                      .+.+.++|+|||+|++....
T Consensus       205 l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          205 FRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             HHHHHHHCCTTCEEEEEECC
T ss_pred             HHHHHHHcCCCcEEEEEcCc
Confidence            35788999999999997643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	61
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	2e-18
d1r18a_	223	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	2e-14
d1dl5a1	213	c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methylt	4e-12
d1jg1a_	215	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	3e-11
d1vbfa_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	1e-09

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 2e-18
 Identities = 38/57 (66%), Positives = 43/57 (75%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWP 60
            LIDQL+PGGRLI+PVGP G  Q LEQ DK  DG+I   PLM V+YVPLTDK+ QW 
Sbjct: 166 ALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWS 222

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 62.2 bits (150), Expect = 2e-14
 Identities = 28/49 (57%), Positives = 38/49 (77%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPL 52
           ELI+QL  GGRLI+PVGP+G +Q ++Q DK+ +G +  T LM V+YVPL
Sbjct: 175 ELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 223

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 213

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

 Score = 55.8 bits (133), Expect = 4e-12
 Identities = 10/49 (20%), Positives = 22/49 (44%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPL 52
               QL+ GGR+I+P+  + S +    + K  D  +     ++  ++  
Sbjct: 160 TWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITA 208

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 215

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 53.3 bits (127), Expect = 3e-11
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQ 56
            LI+QL+ GG+LIIPVG     Q L ++ K  DG I       V +VPL  + 
Sbjct: 161 PLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDG-IKIKNHGGVAFVPLIGEY 212

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 49.4 bits (117), Expect = 1e-09
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 4   ELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWP 60
           +  +QL+ GG +I+P+G     Q L ++ K    + +   L +V++  +    + + 
Sbjct: 150 KPYEQLKEGGIMILPIGVGRV-QKLYKVIKK-GNSPSLENLGEVMFGRIGGL-YGFY 203

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	61
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.65
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.61
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.61
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.59
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.19

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.5e-17  Score=99.52  Aligned_cols=60  Identities=63%  Similarity=1.067  Sum_probs=54.4

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEeccCCCCCCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQHQWP   60 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~~~~~~   60 (61)
                      +|++|++||++|||||+|++.....|.+++++|.+++.|..+.+++|+|+||++.+.+|+
T Consensus       163 ip~~l~~~LkpGG~LV~pv~~~~~~q~l~~~~k~~~~~~~~~~l~~v~fvPl~~~~~~~~  222 (224)
T d1i1na_         163 VPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWS  222 (224)
T ss_dssp             CCHHHHHTEEEEEEEEEEESCTTSCEEEEEEEECTTSCEEEEEEEEECCCBCCCHHHHCC
T ss_pred             cCHHHHhhcCCCcEEEEEEccCCCcEEEEEEEEeCCCeEEEEEEeeEEEECCCCchhhcc
Confidence            689999999999999999997656788999999878889999999999999999887774

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.61  E-value=4e-16  Score=94.75  Aligned_cols=55  Identities=38%  Similarity=0.503  Sum_probs=49.4

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEeccCCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQ   56 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~~   56 (61)
                      +|+.|++||++|||||+|++.....|.+++++|.++ .+..+.+++|+|+||++..
T Consensus       158 ip~~l~~qL~~gGrLv~pv~~~~~~q~l~~~~k~~~-~~~~~~l~~v~fvPl~g~~  212 (215)
T d1jg1a_         158 IPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKD-GIKIKNHGGVAFVPLIGEY  212 (215)
T ss_dssp             CCHHHHHTEEEEEEEEEEECSSSSCEEEEEEEEETT-EEEEEEEEEECCCBCBSTT
T ss_pred             CCHHHHHhcCCCCEEEEEEccCCccEEEEEEEEECC-EEEEEEEccEEEEcCCCcc
Confidence            699999999999999999998756788999999854 5999999999999999876

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.61  E-value=3.8e-16  Score=95.33  Aligned_cols=55  Identities=22%  Similarity=0.342  Sum_probs=49.9

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEeccCCCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQH   57 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~~~   57 (61)
                      +|+.|++||++|||||+|++.+ ..|++++++|.+ +.+..+.+++|+|+||.|..+
T Consensus       147 ip~~l~~qLk~GGrLV~pvg~~-~~q~l~~i~k~~-~~~~~~~l~~v~F~pl~g~~G  201 (224)
T d1vbfa_         147 LLCKPYEQLKEGGIMILPIGVG-RVQKLYKVIKKG-NSPSLENLGEVMFGRIGGLYG  201 (224)
T ss_dssp             CCHHHHHTEEEEEEEEEEECSS-SSEEEEEEECCT-TSCEEEEEEEECCCBCCSTTS
T ss_pred             hhHHHHHhcCCCCEEEEEEcCC-CceEEEEEEEEC-CceEEEEeeeEEEEECCCccc
Confidence            6899999999999999999975 789999999985 469999999999999999774

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=7.6e-16  Score=93.74  Aligned_cols=52  Identities=54%  Similarity=0.935  Sum_probs=48.3

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCCCceEEEEEEECCCCcEEEEEeeeEEEEec
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEGSAQSLEQIDKNLDGTITRTPLMQVVYVPL   52 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~~~~~l~~~~r~~~g~~~~~~l~~~~fvpL   52 (61)
                      +|+.|++||++|||||+|++.....|.+++++|.++|.|+.+.+++|+||||
T Consensus       172 ~p~~l~~~Lk~gG~lV~pvg~~~~~q~l~~i~k~~~g~~~~~~l~~v~FvPL  223 (223)
T d1r18a_         172 TPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL  223 (223)
T ss_dssp             CCHHHHHTEEEEEEEEEEESCSSSCEEEEEEEECTTSCEEEEEEEEECCCCC
T ss_pred             chHHHHHhcCCCcEEEEEEecCCCcEEEEEEEEeCCCcEEEEEEeeEEeecC
Confidence            6899999999999999999976567899999999888899999999999997

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.19  E-value=3e-12  Score=76.67  Aligned_cols=55  Identities=18%  Similarity=0.284  Sum_probs=45.6

Q ss_pred             CcHhHHhcccCCcEEEEEeeCCC-CceEEEEEEECCCCcEEEEEeeeEEEEeccCCC
Q psy5588           1 MVVELIDQLRPGGRLIIPVGPEG-SAQSLEQIDKNLDGTITRTPLMQVVYVPLTDKQ   56 (61)
Q Consensus         1 iP~~l~~QL~~gGrLV~pvg~~~-~~~~l~~~~r~~~g~~~~~~l~~~~fvpL~~~~   56 (61)
                      +|+.|++||+||||||+|++... ..+.++.++|. ++.+..+.+++++|+||.+..
T Consensus       157 ~p~~l~~~LkpGG~lv~pv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Fvpl~g~~  212 (213)
T d1dl5a1         157 VPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK-DPYLVGNYKLETRFITAGGNL  212 (213)
T ss_dssp             CCHHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEE-TTEEEEEEEEECCCCBCCGGG
T ss_pred             hHHHHHHhcCCCcEEEEEECccCCcEEEEEEEEEe-CCeEEEEEEeeEEEEECCCCC
Confidence            58999999999999999997542 34566777776 678999999999999998754