Psyllid ID: psy5599

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MPERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKWKRRDVS
Secondary Structure (PSIPRED)
ccccccccccccEEEEcccHHHHHHHHHHHccEEEEEEEEcccccHHHHHHHHHHHHcccccccccccccccEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEccccHHHHHHHHcccEEEEEEEEcccccccEEEEccEHHHHccccccccccHccHccccccc
Coil and Loop (DISEMBL)
mperkipkevdgyigfanlpNQVFRKAVKKGFEFTLMVVDLKDvtsnvhyenfrcrklaglgtdgkprllnkwkrrdvs
Flexible Loop (DISEMBL)
mperkipkevdgyigfanlpNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFrcrklaglgtdgkprllnkwkrrdvs
Low Complexity Region (SEG)
MPERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKWKRRDVS
Disordered region (IsUnstruct)
*********VDGYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKLAGLGTDG**************
Disordered Region (DISOPRED)
********EVDGYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKLA********************
Disordered Region (DISEMBL)
MPERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKWKRRDVS
Disordered Region (DISPRO)
****KIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKLAGLGTDGK*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKWKRRDVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	79	2.2.26 [Sep-21-2011]
P40797	539	Protein peanut OS=Drosoph	yes	N/A	0.354	0.051	0.743	2e-11
Q9WVC0	436	Septin-7 OS=Rattus norveg	yes	N/A	0.417	0.075	0.787	4e-10
O55131	436	Septin-7 OS=Mus musculus	yes	N/A	0.417	0.075	0.787	4e-10
Q5R481	437	Septin-7 OS=Pongo abelii	yes	N/A	0.405	0.073	0.781	3e-09
Q16181	437	Septin-7 OS=Homo sapiens	yes	N/A	0.405	0.073	0.781	3e-09
Q6Q137	437	Septin-7 OS=Bos taurus GN	yes	N/A	0.405	0.073	0.781	3e-09
Q5R1W1	434	Septin-7 (Fragment) OS=Pa	yes	N/A	0.405	0.073	0.781	3e-09
Q6GLZ5	425	Septin-7 OS=Xenopus laevi	N/A	N/A	0.405	0.075	0.781	4e-09
Q5RA66	361	Septin-2 OS=Pongo abelii	no	N/A	0.481	0.105	0.736	4e-09
P42208	361	Septin-2 OS=Mus musculus	no	N/A	0.481	0.105	0.736	4e-09

>sp|P40797|PNUT_DROME Protein peanut OS=Drosophila melanogaster GN=pnut PE=1 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/39 (74%), Positives = 35/39 (89%)

Query: 1   MPERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
           +P R+ P E+ GY+GFANLPNQV+RKAVK+GFEFTLMVV
Sbjct: 110 LPVRQKPMEIAGYVGFANLPNQVYRKAVKRGFEFTLMVV 148

Involved in cytokinesis and possibly cellularization. Also acts as an enhancer of the sina gene, thus having a role in photoreceptor development.
Drosophila melanogaster (taxid: 7227)

>sp|Q9WVC0|SEPT7_RAT Septin-7 OS=Rattus norvegicus GN=Sept7 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/33 (78%), Positives = 32/33 (96%)

Query: 7  PKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
          PK ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct: 23 PKNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 55

Filament-forming cytoskeletal GTPase. Required for normal organization of the actin cytoskeleton. Required for normal progress through mitosis. Involved in cytokinesis. Required for normal association of CENPE with the kinetochore. Plays a role in ciliogenesis and collective cell movements.

Rattus norvegicus (taxid: 10116)

>sp|O55131|SEPT7_MOUSE Septin-7 OS=Mus musculus GN=Sept7 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/33 (78%), Positives = 32/33 (96%)

Query: 7  PKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
          PK ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct: 23 PKNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 55

Filament-forming cytoskeletal GTPase. Required for normal organization of the actin cytoskeleton. Required for normal progress through mitosis. Involved in cytokinesis. Required for normal association of CENPE with the kinetochore. Plays a role in ciliogenesis and collective cell movements.

Mus musculus (taxid: 10090)

>sp|Q5R481|SEPT7_PONAB Septin-7 OS=Pongo abelii GN=SEPT7 PE=2 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 31/32 (96%)

Query: 8  KEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
          K ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct: 25 KNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 56

Filament-forming cytoskeletal GTPase. Required for normal organization of the actin cytoskeleton. Required for normal progress through mitosis. Involved in cytokinesis. Required for normal association of CENPE with the kinetochore. Plays a role in ciliogenesis and collective cell movements.

Pongo abelii (taxid: 9601)

>sp|Q16181|SEPT7_HUMAN Septin-7 OS=Homo sapiens GN=SEPT7 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 31/32 (96%)

Query: 8  KEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
          K ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct: 25 KNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 56

Filament-forming cytoskeletal GTPase. Required for normal organization of the actin cytoskeleton. Required for normal progress through mitosis. Involved in cytokinesis. Required for normal association of CENPE with the kinetochore. Plays a role in ciliogenesis and collective cell movements.

Homo sapiens (taxid: 9606)

>sp|Q6Q137|SEPT7_BOVIN Septin-7 OS=Bos taurus GN=SEPT7 PE=2 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 31/32 (96%)

Query: 8  KEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
          K ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct: 25 KNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 56

Filament-forming cytoskeletal GTPase. Required for normal organization of the actin cytoskeleton. Required for normal progress through mitosis. Involved in cytokinesis. Required for normal association of CENPE with the kinetochore. Plays a role in ciliogenesis and collective cell movements.

Bos taurus (taxid: 9913)

>sp|Q5R1W1|SEPT7_PANTR Septin-7 (Fragment) OS=Pan troglodytes GN=SEPT7 PE=2 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 31/32 (96%)

Query: 8  KEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
          K ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct: 22 KNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 53

Filament-forming cytoskeletal GTPase. Required for normal organization of the actin cytoskeleton. Required for normal progress through mitosis. Involved in cytokinesis. Required for normal association of CENPE with the kinetochore. Plays a role in ciliogenesis and collective cell movements.

Pan troglodytes (taxid: 9598)

>sp|Q6GLZ5|SEPT7_XENLA Septin-7 OS=Xenopus laevis GN=sept7 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 31/32 (96%)

Query: 8  KEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
          K ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct: 6  KNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 37

Filament-forming cytoskeletal GTPase. Required for normal organization of the actin cytoskeleton. Required for normal progress through mitosis. Involved in cytokinesis (By similarity). Plays a role in ciliogenesis and collective cell movements including convergent extension during gastrulation. Controls cell elongation but not polarization during convergent extension.

Xenopus laevis (taxid: 8355)

>sp|Q5RA66|SEPT2_PONAB Septin-2 OS=Pongo abelii GN=SEPT2 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 31/38 (81%)

Query: 2  PERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
          P + I  E  GY+GFANLPNQV RK+VKKGFEFTLMVV
Sbjct: 6  PTQFINPETPGYVGFANLPNQVHRKSVKKGFEFTLMVV 43

Filament-forming cytoskeletal GTPase. Required for normal organization of the actin cytoskeleton. Plays a role in the biogenesis of polarized columnar-shaped epithelium by maintaining polyglutamylated microtubules, thus facilitating efficient vesicle transport, and by impeding MAP4 binding to tubulin. Required for the progression through mitosis. Forms a scaffold at the midplane of the mitotic splindle required to maintain CENPE localization at kinetochores and consequently chromosome congression. During anaphase, may be required for chromosome segregation and spindle elongation. Plays a role in ciliogenesis and collective cell movements. In cilia, required for the integrity of the diffusion barrier at the base of the primary cilium that prevents diffusion of transmembrane proteins between the cilia and plasma membranes: probably acts by regulating the assembly of the tectonic-like complex (also named B9 complex) by localizing TMEM231 protein.

Pongo abelii (taxid: 9601)

>sp|P42208|SEPT2_MOUSE Septin-2 OS=Mus musculus GN=Sept2 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/38 (73%), Positives = 31/38 (81%)

Query: 2  PERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
          P + I  E  GY+GFANLPNQV RK+VKKGFEFTLMVV
Sbjct: 6  PTQFINPETPGYVGFANLPNQVHRKSVKKGFEFTLMVV 43

Filament-forming cytoskeletal GTPase. Required for normal organization of the actin cytoskeleton. Plays a role in the biogenesis of polarized columnar-shaped epithelium by maintaining polyglutamylated microtubules, thus facilitating efficient vesicle transport, and by impeding MAP4 binding to tubulin. Required for the progression through mitosis. Forms a scaffold at the midplane of the mitotic splindle required to maintain CENPE localization at kinetochores and consequently chromosome congression. During anaphase, may be required for chromosome segregation and spindle elongation. Plays a role in ciliogenesis and collective cell movements (By similarity). In cilia, required for the integrity of the diffusion barrier at the base of the primary cilium that prevents diffusion of transmembrane proteins between the cilia and plasma membranes: probably acts by regulating the assembly of the tectonic-like complex (also named B9 complex) by localizing TMEM231 protein.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
170028232	447	peanut protein [Culex quinquefasciatus]	0.417	0.073	0.909	2e-10
242015572	332	Septin-7, putative [Pediculus humanus co	0.341	0.081	0.837	3e-10
157120289	459	septin [Aedes aegypti] gi|108883103|gb|E	0.291	0.050	0.909	3e-10
156554220	675	PREDICTED: protein peanut-like [Nasonia	0.405	0.047	0.909	6e-10
195149520	534	GL11211 [Drosophila persimilis] gi|19845	0.354	0.052	0.743	7e-10
340714570	711	PREDICTED: protein peanut-like [Bombus t	0.291	0.032	0.878	7e-10
195431351	546	GK15820 [Drosophila willistoni] gi|19415	0.354	0.051	0.743	7e-10
350411154	711	PREDICTED: protein peanut-like [Bombus i	0.291	0.032	0.878	7e-10
194753133	545	GF12347 [Drosophila ananassae] gi|190620	0.354	0.051	0.743	7e-10
194863543	541	GG23345 [Drosophila erecta] gi|195474647	0.354	0.051	0.743	7e-10

>gi|170028232|ref|XP_001842000.1| peanut protein [Culex quinquefasciatus] gi|167871825|gb|EDS35208.1| peanut protein [Culex quinquefasciatus]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/33 (90%), Positives = 33/33 (100%)

Query: 7   PKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
           PKE+DGY+GFANLPNQV+RKAVKKGFEFTLMVV
Sbjct: 88  PKELDGYVGFANLPNQVYRKAVKKGFEFTLMVV 120

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015572|ref|XP_002428427.1| Septin-7, putative [Pediculus humanus corporis] gi|212513039|gb|EEB15689.1| Septin-7, putative [Pediculus humanus corporis]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/37 (83%), Positives = 35/37 (94%)

Query: 3  ERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
          E K PKE+DGY+GFANLPNQV+RKAVKKGFEFTLM+V
Sbjct: 23 ETKRPKELDGYVGFANLPNQVYRKAVKKGFEFTLMIV 59

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157120289|ref|XP_001653590.1| septin [Aedes aegypti] gi|108883103|gb|EAT47328.1| AAEL001574-PA [Aedes aegypti]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/33 (90%), Positives = 33/33 (100%)

Query: 7  PKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
          PKE+DGY+GFANLPNQV+RKAVKKGFEFTLMVV
Sbjct: 38 PKELDGYVGFANLPNQVYRKAVKKGFEFTLMVV 70

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156554220|ref|XP_001600879.1| PREDICTED: protein peanut-like [Nasonia vitripennis]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/33 (90%), Positives = 33/33 (100%)

Query: 7   PKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
           PKE+DGY+GFANLPNQV+RKAVKKGFEFTLMVV
Sbjct: 255 PKELDGYVGFANLPNQVYRKAVKKGFEFTLMVV 287

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195149520|ref|XP_002015705.1| GL11211 [Drosophila persimilis] gi|198456295|ref|XP_001360284.2| GA21269 [Drosophila pseudoobscura pseudoobscura] gi|194109552|gb|EDW31595.1| GL11211 [Drosophila persimilis] gi|198135562|gb|EAL24859.2| GA21269 [Drosophila pseudoobscura pseudoobscura]

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/39 (74%), Positives = 35/39 (89%)

Query: 1   MPERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
           +P R+ P E+ GY+GFANLPNQV+RKAVK+GFEFTLMVV
Sbjct: 105 LPVRQKPMEIAGYVGFANLPNQVYRKAVKRGFEFTLMVV 143

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714570|ref|XP_003395800.1| PREDICTED: protein peanut-like [Bombus terrestris]

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/33 (87%), Positives = 33/33 (100%)

Query: 7   PKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
           PKE+DGY+GFANLPNQV+RKAVKKGF+FTLMVV
Sbjct: 240 PKELDGYVGFANLPNQVYRKAVKKGFDFTLMVV 272

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195431351|ref|XP_002063706.1| GK15820 [Drosophila willistoni] gi|194159791|gb|EDW74692.1| GK15820 [Drosophila willistoni]

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/39 (74%), Positives = 35/39 (89%)

Query: 1   MPERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
           +P R+ P E+ GY+GFANLPNQV+RKAVK+GFEFTLMVV
Sbjct: 117 LPVRQKPMEIAGYVGFANLPNQVYRKAVKRGFEFTLMVV 155

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411154|ref|XP_003489256.1| PREDICTED: protein peanut-like [Bombus impatiens]

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/33 (87%), Positives = 33/33 (100%)

Query: 7   PKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
           PKE+DGY+GFANLPNQV+RKAVKKGF+FTLMVV
Sbjct: 240 PKELDGYVGFANLPNQVYRKAVKKGFDFTLMVV 272

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194753133|ref|XP_001958872.1| GF12347 [Drosophila ananassae] gi|190620170|gb|EDV35694.1| GF12347 [Drosophila ananassae]

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/39 (74%), Positives = 35/39 (89%)

Query: 1   MPERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
           +P R+ P E+ GY+GFANLPNQV+RKAVK+GFEFTLMVV
Sbjct: 116 LPVRQKPMEIAGYVGFANLPNQVYRKAVKRGFEFTLMVV 154

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194863543|ref|XP_001970492.1| GG23345 [Drosophila erecta] gi|195474647|ref|XP_002089602.1| GE19185 [Drosophila yakuba] gi|190662359|gb|EDV59551.1| GG23345 [Drosophila erecta] gi|194175703|gb|EDW89314.1| GE19185 [Drosophila yakuba]

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/39 (74%), Positives = 35/39 (89%)

Query: 1   MPERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
           +P R+ P E+ GY+GFANLPNQV+RKAVK+GFEFTLMVV
Sbjct: 112 LPVRQKPMEIAGYVGFANLPNQVYRKAVKRGFEFTLMVV 150

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
FB|FBgn0013726	539	pnut "peanut" [Drosophila mela	0.493	0.072	0.743	3.4e-22
UNIPROTKB|D4A0F5	417	Sept7 "Septin-7" [Rattus norve	0.417	0.079	0.787	4.6e-18
MGI|MGI:1335094	436	Sept7 "septin 7" [Mus musculus	0.417	0.075	0.787	5.5e-18
RGD|620469	436	Sept7 "septin 7" [Rattus norve	0.417	0.075	0.787	5.5e-18
UNIPROTKB|F1LMC7	436	Sept7 "Septin-7" [Rattus norve	0.417	0.075	0.787	5.5e-18
UNIPROTKB|F1LYE8	437	Sept7 "Septin-7" [Rattus norve	0.417	0.075	0.787	5.5e-18
UNIPROTKB|H0Y3Y4	373	SEPT7 "Septin-7" [Homo sapiens	0.405	0.085	0.781	1.7e-17
UNIPROTKB|H0YFF6	381	SEPT7 "Septin-7" [Homo sapiens	0.405	0.083	0.781	1.9e-17
UNIPROTKB|F1NIP9	415	SEPT7 "Uncharacterized protein	0.405	0.077	0.781	2.6e-17
UNIPROTKB|F1SIK9	417	LOC100523875 "Uncharacterized	0.405	0.076	0.781	2.7e-17

FB|FBgn0013726 pnut "peanut" [Drosophila melanogaster (taxid:7227)]

 Score = 159 (61.0 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
 Identities = 29/39 (74%), Positives = 35/39 (89%)

Query:     1 MPERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
             +P R+ P E+ GY+GFANLPNQV+RKAVK+GFEFTLMVV
Sbjct:   110 LPVRQKPMEIAGYVGFANLPNQVYRKAVKRGFEFTLMVV 148

GO:0000910 "cytokinesis" evidence=ISS;IMP;NAS;TAS

GO:0042051 "compound eye photoreceptor development" evidence=NAS

GO:0045171 "intercellular bridge" evidence=NAS

GO:0016324 "apical plasma membrane" evidence=NAS

GO:0006903 "vesicle targeting" evidence=TAS

GO:0003779 "actin binding" evidence=IDA

GO:0006904 "vesicle docking involved in exocytosis" evidence=TAS

GO:0008017 "microtubule binding" evidence=IDA

GO:0005940 "septin ring" evidence=ISS

GO:0045172 "germline ring canal" evidence=NAS

GO:0007349 "cellularization" evidence=TAS

GO:0000915 "cytokinesis, actomyosin contractile ring assembly" evidence=NAS

GO:0007049 "cell cycle" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IGI

GO:0043065 "positive regulation of apoptotic process" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0031105 "septin complex" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IDA

UNIPROTKB|D4A0F5 Sept7 "Septin-7" [Rattus norvegicus (taxid:10116)]

 Score = 149 (57.5 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
 Identities = 26/33 (78%), Positives = 32/33 (96%)

Query:     7 PKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
             PK ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct:     4 PKNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 36

GO:0005525 "GTP binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0031105 "septin complex" evidence=IEA

MGI|MGI:1335094 Sept7 "septin 7" [Mus musculus (taxid:10090)]

 Score = 149 (57.5 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
 Identities = 26/33 (78%), Positives = 32/33 (96%)

Query:     7 PKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
             PK ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct:    23 PKNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 55

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0001725 "stress fiber" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0005938 "cell cortex" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0031105 "septin complex" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0043679 "axon terminus" evidence=IDA

GO:0045202 "synapse" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0051301 "cell division" evidence=IEA

RGD|620469 Sept7 "septin 7" [Rattus norvegicus (taxid:10116)]

 Score = 149 (57.5 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
 Identities = 26/33 (78%), Positives = 32/33 (96%)

Query:     7 PKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
             PK ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct:    23 PKNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 55

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0001725 "stress fiber" evidence=ISO

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005819 "spindle" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005938 "cell cortex" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=ISO

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0016020 "membrane" evidence=IDA

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0016476 "regulation of embryonic cell shape" evidence=ISS

GO:0030496 "midbody" evidence=IEA

GO:0031105 "septin complex" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0035085 "cilium axoneme" evidence=ISS

GO:0043679 "axon terminus" evidence=ISO

GO:0045202 "synapse" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=ISS

UNIPROTKB|F1LMC7 Sept7 "Septin-7" [Rattus norvegicus (taxid:10116)]

 Score = 149 (57.5 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
 Identities = 26/33 (78%), Positives = 32/33 (96%)

Query:     7 PKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
             PK ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct:    23 PKNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 55

GO:0005525 "GTP binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0031105 "septin complex" evidence=IEA

UNIPROTKB|F1LYE8 Sept7 "Septin-7" [Rattus norvegicus (taxid:10116)]

 Score = 149 (57.5 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
 Identities = 26/33 (78%), Positives = 32/33 (96%)

Query:     7 PKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
             PK ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct:    24 PKNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 56

GO:0005525 "GTP binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0031105 "septin complex" evidence=IEA

UNIPROTKB|H0Y3Y4 SEPT7 "Septin-7" [Homo sapiens (taxid:9606)]

 Score = 142 (55.0 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
 Identities = 25/32 (78%), Positives = 31/32 (96%)

Query:     8 KEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
             K ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct:     3 KNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 34

GO:0007049 "cell cycle" evidence=IEA

GO:0031105 "septin complex" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|H0YFF6 SEPT7 "Septin-7" [Homo sapiens (taxid:9606)]

 Score = 142 (55.0 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
 Identities = 25/32 (78%), Positives = 31/32 (96%)

Query:     8 KEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
             K ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct:    11 KNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 42

GO:0007049 "cell cycle" evidence=IEA

GO:0031105 "septin complex" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|F1NIP9 SEPT7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
 Identities = 25/32 (78%), Positives = 31/32 (96%)

Query:     8 KEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
             K ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct:     3 KNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 34

GO:0007049 "cell cycle" evidence=IEA

GO:0031105 "septin complex" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0043679 "axon terminus" evidence=IEA

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|F1SIK9 LOC100523875 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 142 (55.0 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
 Identities = 25/32 (78%), Positives = 31/32 (96%)

Query:     8 KEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
             K ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct:     5 KNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 36

GO:0045202 "synapse" evidence=IEA

GO:0043679 "axon terminus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0031105 "septin complex" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O55131	SEPT7_MOUSE	No assigned EC number	0.7878	0.4177	0.0756	yes	N/A
Q9WVC0	SEPT7_RAT	No assigned EC number	0.7878	0.4177	0.0756	yes	N/A
Q5R481	SEPT7_PONAB	No assigned EC number	0.7812	0.4050	0.0732	yes	N/A
P32457	CDC3_YEAST	No assigned EC number	0.5128	0.4810	0.0730	yes	N/A
Q16181	SEPT7_HUMAN	No assigned EC number	0.7812	0.4050	0.0732	yes	N/A
Q6Q137	SEPT7_BOVIN	No assigned EC number	0.7812	0.4050	0.0732	yes	N/A
Q5R1W1	SEPT7_PANTR	No assigned EC number	0.7812	0.4050	0.0737	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	79
pfam00735	280	pfam00735, Septin, Septin	2e-06
COG5019	373	COG5019, CDC3, Septin family protein [Cell divisio	5e-06
cd01850	275	cd01850, CDC_Septin, CDC/Septin GTPase family	8e-06
COG5019	373	COG5019, CDC3, Septin family protein [Cell divisio	6e-04

>gnl|CDD|201420 pfam00735, Septin, Septin

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 14/23 (60%), Positives = 18/23 (78%)

Query: 40  DLKDVTSNVHYENFRCRKLAGLG 62
           DLK+VT  +HYEN+R  KL+ LG
Sbjct: 253 DLKEVTHELHYENYRSEKLSALG 275

Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerise to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis. Length = 280

>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 41.9 bits (99), Expect = 5e-06
 Identities = 18/28 (64%), Positives = 22/28 (78%)

Query: 12 GYIGFANLPNQVFRKAVKKGFEFTLMVV 39
          GY+G +NLPNQ  RK  KKG +FT+MVV
Sbjct: 2  GYVGISNLPNQRHRKLSKKGIDFTIMVV 29

Length = 373

>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family

 Score = 41.4 bits (98), Expect = 8e-06
 Identities = 14/23 (60%), Positives = 16/23 (69%)

Query: 40  DLKDVTSNVHYENFRCRKLAGLG 62
           DLK+ T NVHYEN+R  KL  L 
Sbjct: 253 DLKETTHNVHYENYRSEKLEALK 275

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275

>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 36.1 bits (84), Expect = 6e-04
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 40  DLKDVTSNVHYENFRCRKLAGLGTDGKP 67
           +LK+ T N+ YEN+R  KL+GL   G+P
Sbjct: 274 ELKETTENLLYENYRTEKLSGLKNSGEP 301

Length = 373

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
KOG2655|consensus	366		99.35
KOG1547|consensus	336		99.23
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.14
KOG3859|consensus	406		99.13
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.84
KOG2655|consensus	366		98.75
KOG3859|consensus	406		98.73
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.66
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.53
KOG1547|consensus	336		98.44
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.21
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	97.52
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	93.87
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	93.56
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	93.5
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	93.08
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	92.91
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	92.83
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	92.81
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	92.8
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	92.61
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	92.56
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	92.56
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	92.55
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	92.54
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	92.27
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	92.14
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	91.96
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	91.74
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	91.59
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	91.56
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	91.51
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	91.01
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	90.74
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	90.72
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	90.66
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	90.64
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	90.62
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	90.58
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	90.54
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	90.46
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	90.42
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	90.36
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	90.33
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	90.33
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	89.96
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	89.73
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	89.71
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	89.57
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	89.54
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	89.32
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	89.14
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	89.13
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	88.93
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	88.81
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	88.81
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	88.71
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	88.66
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	88.6
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	88.59
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	88.42
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	88.34
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	88.22
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	88.2
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	88.15
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	88.12
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	88.04
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	87.99
PLN03108	210	Rab family protein; Provisional	87.97
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	87.81
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	87.71
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	87.68
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	87.31
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	87.07
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	86.96
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	86.87
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	86.85
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	86.84
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	86.81
COG1162	301	Predicted GTPases [General function prediction onl	86.71
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	86.63
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	86.48
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	86.41
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	86.21
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	86.11
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	86.1
cd00881	189	GTP_translation_factor GTP translation factor fami	86.05
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	85.88
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	85.84
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	85.71
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	85.68
PRK12288	347	GTPase RsgA; Reviewed	85.66
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	85.5
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	85.47
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	85.27
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	85.26
PRK12289	352	GTPase RsgA; Reviewed	85.26
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	85.24
PLN03110	216	Rab GTPase; Provisional	85.09
PTZ00369	189	Ras-like protein; Provisional	84.96
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	84.48
PLN03118	211	Rab family protein; Provisional	84.41
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	84.27
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	84.21
PRK04213	201	GTP-binding protein; Provisional	84.17
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	84.15
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	83.71
PRK09563	287	rbgA GTPase YlqF; Reviewed	83.42
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	83.27
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	83.26
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	83.03
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	82.93
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	82.91
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	82.87
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	82.82
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	82.51
COG3596	296	Predicted GTPase [General function prediction only	82.46
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	82.46
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	82.31
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	82.19
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	82.11
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	81.96
PRK07261	171	topology modulation protein; Provisional	81.9
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	81.75
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	81.72
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	81.56
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	81.5
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	81.49
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	81.4
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	81.33
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	81.24
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	80.95
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	80.77
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	80.5
smart00178	184	SAR Sar1p-like members of the Ras-family of small	80.33
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	80.21
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	80.16

>KOG2655|consensus

Probab=99.35  E-value=3.7e-13  Score=103.24  Aligned_cols=48  Identities=52%  Similarity=0.842  Sum_probs=46.0

Q ss_pred             ceeeeeCCChHHHHHHhhCceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          13 YIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        13 ~~G~~~lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      +||++++|+|+|++.+|+||.|++|+||++|+||+||+|++|...+..
T Consensus         1 ~vg~~~lP~q~~r~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~   48 (366)
T KOG2655|consen    1 YVGFANLPNQVHRKSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSG   48 (366)
T ss_pred             CCccccChHHHHHHHHhcCCceEEEEecCCCccHHHHHHHHHhhhccC
Confidence            699999999999999999999999999999999999999999997765

>KOG1547|consensus

Probab=99.23  E-value=4.7e-12  Score=94.73  Aligned_cols=56  Identities=23%  Similarity=0.447  Sum_probs=50.9

Q ss_pred             CCCccCCceeeeeCCChHHHHHHhhCceEeeeeecccCccccchhhhhhhhhhcCC
Q psy5599           6 IPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKLAGL   61 (79)
Q Consensus         6 ~~~~~~~~~G~~~lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r~~~L~~~   61 (79)
                      +....-+||||+++-+|..++.+|.||+||+||||.||+||+|++|++|.+++..-
T Consensus        19 ~~~~~lgyvGidtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~   74 (336)
T KOG1547|consen   19 INSNLLGYVGIDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDS   74 (336)
T ss_pred             ccCCccccccHHHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhc
Confidence            34444589999999999999999999999999999999999999999999998774

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.14  E-value=2.4e-11  Score=93.46  Aligned_cols=50  Identities=38%  Similarity=0.596  Sum_probs=47.0

Q ss_pred             CceeeeeCCChHHHHHHhhCceEeeeeecccCccccchhhhhhhhhhcCC
Q psy5599          12 GYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKLAGL   61 (79)
Q Consensus        12 ~~~G~~~lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r~~~L~~~   61 (79)
                      +++|++++|+|+|++..|+|+.||+|+||++|+||+||+|++|++.|..-
T Consensus         2 ~~vgi~~l~~~r~~~~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~   51 (373)
T COG5019           2 GYVGISNLPNQRHRKLSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDE   51 (373)
T ss_pred             CcCCcCcchHHHHHHHHhcCCceEEEEecCCCCchhHHHHhhhHhhccCC
Confidence            68999999999999999999999999999999999999999999976654

>KOG3859|consensus

Probab=99.13  E-value=2.9e-11  Score=92.09  Aligned_cols=57  Identities=23%  Similarity=0.433  Sum_probs=52.5

Q ss_pred             CCCccCCceeeeeCCChHHHHHHhhCceEeeeeecccCccccchhhhhhhhhhcCCC
Q psy5599           6 IPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKLAGLG   62 (79)
Q Consensus         6 ~~~~~~~~~G~~~lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r~~~L~~~~   62 (79)
                      +..++.|+|||+++|+|..++++..||.||+||+|+.|+||+|+++++|...+..-+
T Consensus        15 R~l~l~GHvGFdsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p   71 (406)
T KOG3859|consen   15 RTLQLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEP   71 (406)
T ss_pred             eeeeecCccCcccChHHHHHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCC
Confidence            445778999999999999999999999999999999999999999999999887644

>cd01850 CDC_Septin CDC/Septin

Probab=98.84  E-value=2.1e-10  Score=83.89  Aligned_cols=51  Identities=35%  Similarity=0.505  Sum_probs=47.7

Q ss_pred             CCc-eeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhhcCC
Q psy5599          11 DGY-IGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKLAGL   61 (79)
Q Consensus        11 ~~~-~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L~~~   61 (79)
                      ..| ||+++++|+.||||+++ .++|.+||++++..|+..|||+||+++|...
T Consensus       223 R~y~WG~~~v~n~~h~df~~Lr~~l~~~~~~~l~~~t~~~~Ye~yr~~~l~~~  275 (276)
T cd01850         223 RKYPWGVVEVENEEHCDFVKLRNLLIRTHLQDLKETTHNVHYENYRTEKLSSR  275 (276)
T ss_pred             ecCCccEEeecCcccccHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhcC
Confidence            345 99999999999999999 8999999999999999999999999998764

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>KOG2655|consensus

Probab=98.75  E-value=5.5e-10  Score=85.86  Aligned_cols=56  Identities=34%  Similarity=0.446  Sum_probs=51.6

Q ss_pred             Cc-eeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhhcCCCCCCCc
Q psy5599          12 GY-IGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKLAGLGTDGKP   67 (79)
Q Consensus        12 ~~-~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L~~~~~~~~~   67 (79)
                      .| ||+++++|+.||||.++ .++|.+||.++..+|+..|||+||+++|.........
T Consensus       240 ~YpWG~veien~~h~DF~~Lr~~Li~thl~dLk~~T~~~~YEnYR~~~L~~~~~~~~~  297 (366)
T KOG2655|consen  240 KYPWGTVEIENPEHCDFKKLRNLLIRTHLEDLKDTTNNLLYENYRTEKLEGLLYKGEN  297 (366)
T ss_pred             ecCCceeeccCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccCCc
Confidence            45 99999999999999999 8999999999999999999999999999998755543

>KOG3859|consensus

Probab=98.73  E-value=2.6e-09  Score=81.55  Aligned_cols=56  Identities=25%  Similarity=0.284  Sum_probs=53.0

Q ss_pred             eeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhhcCCCCCCCccc
Q psy5599          14 IGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKLAGLGTDGKPRL   69 (79)
Q Consensus        14 ~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L~~~~~~~~~~~   69 (79)
                      ||+++++|..||||+|+ .+++++.|-+++.-||+.|||.||..+|..++..++...
T Consensus       258 wG~v~vENE~HCDFVKLREmLirtNmedlReqTHtrhYElyRr~kL~~Mgf~dv~~~  314 (406)
T KOG3859|consen  258 WGTVQVENELHCDFVKLREMLIRTNMEDLREQTHTRHYELYRRCKLEEMGFKDVDPD  314 (406)
T ss_pred             CCceeecchhhhHHHHHHHHHccccHHHHhhhccccchHHHHHHHHHHcCCccCCCC
Confidence            99999999999999999 899999999999999999999999999999997776654

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.66  E-value=1.1e-09  Score=80.67  Aligned_cols=49  Identities=35%  Similarity=0.459  Sum_probs=45.5

Q ss_pred             eeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhhcCCC
Q psy5599          14 IGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKLAGLG   62 (79)
Q Consensus        14 ~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L~~~~   62 (79)
                      ||+++++|+.||||+++ .++|.+|++++++.|++.|||+||.++|....
T Consensus       227 WG~vev~n~~hsDF~~Lr~~Ll~~~l~dL~~~T~~~~YE~yR~~~L~~~~  276 (281)
T PF00735_consen  227 WGTVEVENPEHSDFLKLRNLLLGTHLQDLKDSTENVHYENYRTEKLSSRK  276 (281)
T ss_dssp             TEEEETT-TTTSSHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHH-
T ss_pred             CccccccccccccHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            99999999999999999 89999999999999999999999999998754

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.53  E-value=5.2e-09  Score=80.70  Aligned_cols=55  Identities=29%  Similarity=0.492  Sum_probs=50.7

Q ss_pred             CCc-eeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhhcCCCCCC
Q psy5599          11 DGY-IGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKLAGLGTDG   65 (79)
Q Consensus        11 ~~~-~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L~~~~~~~   65 (79)
                      ..| ||+++++|+.||||.++ .++|.+|+.++...|+..|||+||++.|.......
T Consensus       243 R~YpWG~v~Idd~~hsDF~~Lr~~Li~thL~~L~~~T~~~~YE~YR~e~L~~~~~~~  299 (373)
T COG5019         243 RKYPWGVVEIDDEEHSDFKKLRNLLIRTHLQELKETTENLLYENYRTEKLSGLKNSG  299 (373)
T ss_pred             eccCCcceecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence            345 99999999999999999 89999999999999999999999999999877544

>KOG1547|consensus

Probab=98.44  E-value=1.4e-08  Score=76.24  Aligned_cols=51  Identities=31%  Similarity=0.449  Sum_probs=47.8

Q ss_pred             CceeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhhcCCC
Q psy5599          12 GYIGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKLAGLG   62 (79)
Q Consensus        12 ~~~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L~~~~   62 (79)
                      ..||+++|+|-.||.|+-+ .|++++|+++++++|+..|||+||...|....
T Consensus       266 trWg~IeVen~nhCeF~~LRdfliRtHlQdlke~Ts~iHyE~yR~krLn~~~  317 (336)
T KOG1547|consen  266 TRWGIIEVENLNHCEFVLLRDFLIRTHLQDLKETTSNIHYETYRAKRLNELK  317 (336)
T ss_pred             cccceEEecccccchhHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHhhhc
Confidence            4599999999999999998 89999999999999999999999999988744

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.21  E-value=4.7e-07  Score=66.85  Aligned_cols=33  Identities=21%  Similarity=0.360  Sum_probs=26.7

Q ss_pred             hCceEeeeeecccCccccchhhhhhhhhhcCCC
Q psy5599          30 KGFEFTLMVVDLKDVTSNVHYENFRCRKLAGLG   62 (79)
Q Consensus        30 ~g~~fn~mvvglsglgkst~~e~~r~~~L~~~~   62 (79)
                      +|+.||+||+|++|+||+||+|+++...+....
T Consensus         1 kg~~fnImVvG~sG~GKTTFIntL~~~~~~~~~   33 (281)
T PF00735_consen    1 KGFNFNIMVVGESGLGKTTFINTLFNSDIISED   33 (281)
T ss_dssp             HEEEEEEEEEECTTSSHHHHHHHHHTSS-----
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhccccccc
Confidence            489999999999999999999999998776654

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd01850 CDC_Septin CDC/Septin

Probab=97.52  E-value=4.8e-05  Score=55.74  Aligned_cols=32  Identities=28%  Similarity=0.409  Sum_probs=29.1

Q ss_pred             hCceEeeeeecccCccccchhhhhhhhhhcCC
Q psy5599          30 KGFEFTLMVVDLKDVTSNVHYENFRCRKLAGL   61 (79)
Q Consensus        30 ~g~~fn~mvvglsglgkst~~e~~r~~~L~~~   61 (79)
                      +|+.|++|++|.+|+||++|+|+++...+...
T Consensus         1 ~g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~   32 (276)
T cd01850           1 KGFQFNIMVVGESGLGKSTFINTLFNTKLIPS   32 (276)
T ss_pred             CCcEEEEEEEcCCCCCHHHHHHHHHcCCCccc
Confidence            48999999999999999999999999887654

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd00154 Rab Rab family

Probab=93.87  E-value=0.032  Score=34.71  Aligned_cols=28  Identities=14%  Similarity=0.146  Sum_probs=23.9

Q ss_pred             EeeeeecccCccccchhhhhhhhhhcCC
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLAGL   61 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~~~   61 (79)
                      ++++++|..|.|||++++.|........
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~   28 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN   28 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCc
Confidence            4789999999999999999987766554

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01858 NGP_1 NGP-1

Probab=93.56  E-value=0.043  Score=36.09  Aligned_cols=28  Identities=11%  Similarity=0.220  Sum_probs=23.8

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +..++++++|.+++||++++|.+.....
T Consensus       100 ~~~~~v~~~G~~nvGKStliN~l~~~~~  127 (157)
T cd01858         100 KKQISVGFIGYPNVGKSSIINTLRSKKV  127 (157)
T ss_pred             ccceEEEEEeCCCCChHHHHHHHhcCCc
Confidence            3467899999999999999999986543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd04123 Rab21 Rab21 subfamily

Probab=93.50  E-value=0.039  Score=34.88  Aligned_cols=27  Identities=11%  Similarity=0.137  Sum_probs=23.4

Q ss_pred             EeeeeecccCccccchhhhhhhhhhcC
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      +++.++|.+|.|||++++.|+......
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~   27 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNE   27 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence            468999999999999999999876644

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01855 YqeH YqeH

Probab=93.08  E-value=0.055  Score=36.60  Aligned_cols=25  Identities=12%  Similarity=0.041  Sum_probs=22.5

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .+++++|.+|+||++++|.++....
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~  152 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDN  152 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence            5799999999999999999997654

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=92.91  E-value=0.061  Score=33.02  Aligned_cols=25  Identities=8%  Similarity=0.086  Sum_probs=21.0

Q ss_pred             eeeeecccCccccchhhhhhhhhhc
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+.|+|.+|.|||++++.|......
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~   25 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFP   25 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCc
Confidence            3789999999999999999987765

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=92.83  E-value=0.095  Score=38.08  Aligned_cols=30  Identities=17%  Similarity=0.264  Sum_probs=26.6

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ...++++++|.+|.|||+++|.++.+....
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~   58 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAA   58 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcc
Confidence            688999999999999999999999876543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd01866 Rab2 Rab2 subfamily

Probab=92.81  E-value=0.069  Score=34.95  Aligned_cols=28  Identities=11%  Similarity=0.293  Sum_probs=24.2

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      +.|+++++|.+|.|||++++.|......
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~   30 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ   30 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            4689999999999999999999876543

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=92.80  E-value=0.059  Score=37.34  Aligned_cols=24  Identities=8%  Similarity=-0.025  Sum_probs=21.1

Q ss_pred             EeeeeecccCccccchhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      =++.++|.||+||++++|.+....
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            458899999999999999998764

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd00157 Rho Rho (Ras homology) family

Probab=92.61  E-value=0.08  Score=34.01  Aligned_cols=25  Identities=16%  Similarity=0.199  Sum_probs=22.5

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      |+++++|.+|.|||++++.|.....
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~   25 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKF   25 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC
Confidence            5789999999999999999998765

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=92.56  E-value=0.061  Score=37.59  Aligned_cols=29  Identities=10%  Similarity=0.070  Sum_probs=25.0

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...|.++++|.+|+|||++++.|......
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~   39 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE   39 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCC
Confidence            56789999999999999999998866553

>cd01860 Rab5_related Rab5-related subfamily

Probab=92.56  E-value=0.071  Score=34.10  Aligned_cols=28  Identities=14%  Similarity=0.210  Sum_probs=24.3

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .+.++++|.++.|||++++.|....+..
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~   28 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSE   28 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence            3689999999999999999999877554

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=92.55  E-value=0.082  Score=34.47  Aligned_cols=29  Identities=14%  Similarity=0.232  Sum_probs=24.7

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ..++++++|.+|.|||++++.|.......
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~   30 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNP   30 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCc
Confidence            45899999999999999999998766443

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=92.54  E-value=0.084  Score=34.11  Aligned_cols=27  Identities=15%  Similarity=0.185  Sum_probs=23.2

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .|.++++|.+|+|||++++.|......
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~   28 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYT   28 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            478999999999999999999866543

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=92.27  E-value=0.086  Score=33.29  Aligned_cols=25  Identities=16%  Similarity=0.178  Sum_probs=22.2

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +.+.++|.+|+|||++++.|.....
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~   26 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHF   26 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC
Confidence            6789999999999999999987654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01864 Rab19 Rab19 subfamily

Probab=92.14  E-value=0.1  Score=33.74  Aligned_cols=27  Identities=15%  Similarity=0.404  Sum_probs=23.3

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ..|++.++|..|.|||++++.|.....
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~   28 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTF   28 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC
Confidence            368999999999999999999976554

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00175 RAB Rab subfamily of small GTPases

Probab=91.96  E-value=0.076  Score=33.81  Aligned_cols=25  Identities=16%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      |+++++|.+|.|||++++.|.....
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~   25 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKF   25 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4789999999999999999987655

Rab GTPases are implicated in vesicle trafficking.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=91.74  E-value=0.096  Score=40.80  Aligned_cols=25  Identities=8%  Similarity=0.076  Sum_probs=21.9

Q ss_pred             CceEeeeeecccCccccchhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRC   55 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~   55 (79)
                      ...+++-|.|++|.||++|+|.+|.
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrG   57 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRG   57 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhC
Confidence            6889999999999999999999995

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=91.59  E-value=0.095  Score=33.29  Aligned_cols=26  Identities=4%  Similarity=0.116  Sum_probs=22.3

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      +++.++|.+|+|||++++.|......
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~   26 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFV   26 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            46889999999999999999876643

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04113 Rab4 Rab4 subfamily

Probab=91.56  E-value=0.12  Score=33.09  Aligned_cols=27  Identities=11%  Similarity=0.261  Sum_probs=22.7

Q ss_pred             EeeeeecccCccccchhhhhhhhhhcC
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ++++++|.+|+|||++++.|.......
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~   27 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKE   27 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence            478999999999999999998765433

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=91.51  E-value=0.085  Score=32.71  Aligned_cols=24  Identities=13%  Similarity=0.246  Sum_probs=20.7

Q ss_pred             eeeeecccCccccchhhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .+.++|..|.||||++|.+.....
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~   24 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKL   24 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTS
T ss_pred             CEEEECCCCCCHHHHHHHHhcccc
Confidence            368999999999999999997543

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd04124 RabL2 RabL2 subfamily

Probab=91.01  E-value=0.12  Score=33.55  Aligned_cols=26  Identities=12%  Similarity=0.130  Sum_probs=22.1

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      +.+.++|.+|+|||++.+.|......
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~   26 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYE   26 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            46889999999999999999876543

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04176 Rap2 Rap2 subgroup

Probab=90.74  E-value=0.15  Score=32.69  Aligned_cols=27  Identities=11%  Similarity=0.172  Sum_probs=23.2

Q ss_pred             EeeeeecccCccccchhhhhhhhhhcC
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      |++.++|..|+|||++++.|.......
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~   28 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIE   28 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence            689999999999999999988766543

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01868 Rab11_like Rab11-like

Probab=90.72  E-value=0.2  Score=32.19  Aligned_cols=27  Identities=11%  Similarity=0.217  Sum_probs=23.3

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+.+.++|.++.|||++++.|......
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~   29 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFN   29 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            478999999999999999999876544

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=90.66  E-value=0.15  Score=33.44  Aligned_cols=25  Identities=12%  Similarity=0.086  Sum_probs=22.0

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .+++++|..|.|||++++.|.....
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~   26 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHF   26 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC
Confidence            5789999999999999999986554

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01865 Rab3 Rab3 subfamily

Probab=90.64  E-value=0.16  Score=33.05  Aligned_cols=26  Identities=12%  Similarity=0.254  Sum_probs=22.9

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      |.+.++|..|+|||++++.|......
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~   27 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFT   27 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            78999999999999999999876653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04114 Rab30 Rab30 subfamily

Probab=90.62  E-value=0.19  Score=32.40  Aligned_cols=29  Identities=14%  Similarity=0.251  Sum_probs=24.3

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+.+.++|.+|.|||++++.+......
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~   33 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFP   33 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            35688999999999999999998765543

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=90.58  E-value=0.18  Score=32.32  Aligned_cols=27  Identities=15%  Similarity=0.187  Sum_probs=22.6

Q ss_pred             EeeeeecccCccccchhhhhhhhhhcC
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      |.+.++|..|+|||++++.|.......
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~   27 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVD   27 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCc
Confidence            468899999999999999998766543

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01862 Rab7 Rab7 subfamily

Probab=90.54  E-value=0.13  Score=33.00  Aligned_cols=25  Identities=8%  Similarity=0.244  Sum_probs=21.8

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      |++.++|..|.|||++.+.|.....
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~   25 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKF   25 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4789999999999999999987654

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=90.46  E-value=0.15  Score=31.21  Aligned_cols=24  Identities=13%  Similarity=0.191  Sum_probs=21.9

Q ss_pred             EeeeeecccCccccchhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      +++.++|.+|.|||++.+.+....
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            678999999999999999998766

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04140 ARHI_like ARHI subfamily

Probab=90.42  E-value=0.17  Score=32.93  Aligned_cols=26  Identities=12%  Similarity=0.120  Sum_probs=22.9

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      +.+.++|..|+|||++++.|......
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~   27 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFR   27 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            67899999999999999999876653

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=90.36  E-value=0.18  Score=32.96  Aligned_cols=27  Identities=15%  Similarity=0.256  Sum_probs=23.1

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+++.++|.+|+|||++++.|......
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~   28 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFP   28 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            478999999999999999999866543

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=90.33  E-value=0.15  Score=32.26  Aligned_cols=26  Identities=15%  Similarity=0.252  Sum_probs=22.0

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      |++.++|.+|.|||++++.+......
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~   26 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFV   26 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCc
Confidence            57899999999999999999865543

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=90.33  E-value=0.28  Score=37.38  Aligned_cols=50  Identities=16%  Similarity=0.213  Sum_probs=36.8

Q ss_pred             cCCceeeeeCCChHHHH----HHhh----CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          10 VDGYIGFANLPNQVFRK----AVKK----GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        10 ~~~~~G~~~lpnq~~~~----~~K~----g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+.|+-+.|--...+    +-++    -..++++++|.+|+|||+++|++..+...
T Consensus         7 ~~~w~g~~~~~~~tq~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~   64 (313)
T TIGR00991         7 PREWVGIQQFPPATQTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIA   64 (313)
T ss_pred             CcceeccccCCHHHHHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcc
Confidence            34567999988733222    2222    36789999999999999999999987653

>cd01861 Rab6 Rab6 subfamily

Probab=89.96  E-value=0.16  Score=32.33  Aligned_cols=27  Identities=11%  Similarity=0.144  Sum_probs=22.9

Q ss_pred             EeeeeecccCccccchhhhhhhhhhcC
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      +++.++|..+.|||++++.|.......
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~   27 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDN   27 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCc
Confidence            368899999999999999998776543

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04122 Rab14 Rab14 subfamily

Probab=89.73  E-value=0.21  Score=32.35  Aligned_cols=27  Identities=15%  Similarity=0.266  Sum_probs=23.3

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .|.+.++|..|+|||++++.|....+.
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~   28 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFM   28 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            478999999999999999999876543

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04111 Rab39 Rab39 subfamily

Probab=89.71  E-value=0.25  Score=34.23  Aligned_cols=29  Identities=21%  Similarity=0.352  Sum_probs=24.8

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcCC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAGL   61 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~~   61 (79)
                      .|.+.++|.+|+|||++++.|....+...
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~   30 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV   30 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence            47899999999999999999987765443

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01863 Rab18 Rab18 subfamily

Probab=89.57  E-value=0.18  Score=32.19  Aligned_cols=25  Identities=8%  Similarity=0.165  Sum_probs=21.8

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      |++.++|..+.|||++++.|.....
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~   25 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTF   25 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4689999999999999999986654

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04117 Rab15 Rab15 subfamily

Probab=89.54  E-value=0.18  Score=32.86  Aligned_cols=27  Identities=15%  Similarity=0.246  Sum_probs=22.9

Q ss_pred             EeeeeecccCccccchhhhhhhhhhcC
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      |.++++|..|.|||+++..|.......
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~   27 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHS   27 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCC
Confidence            468999999999999999998766543

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04125 RabA_like RabA-like subfamily

Probab=89.32  E-value=0.19  Score=33.50  Aligned_cols=27  Identities=11%  Similarity=0.245  Sum_probs=23.1

Q ss_pred             EeeeeecccCccccchhhhhhhhhhcC
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      +.++++|.+|+|||++++.|.......
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~   27 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSE   27 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            468999999999999999998776543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04136 Rap_like Rap-like subfamily

Probab=89.14  E-value=0.27  Score=31.30  Aligned_cols=25  Identities=12%  Similarity=0.145  Sum_probs=21.9

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +.+.++|..|.|||++++.|.....
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~   26 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIF   26 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC
Confidence            6789999999999999999886554

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04135 Tc10 TC10 subfamily

Probab=89.13  E-value=0.27  Score=31.83  Aligned_cols=27  Identities=11%  Similarity=0.090  Sum_probs=22.6

Q ss_pred             EeeeeecccCccccchhhhhhhhhhcC
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      |.++++|..|.|||++++.|.......
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~   27 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPE   27 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence            468999999999999999988766543

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=88.93  E-value=0.23  Score=31.88  Aligned_cols=22  Identities=9%  Similarity=0.359  Sum_probs=19.2

Q ss_pred             eeeeecccCccccchhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCR   56 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~   56 (79)
                      |+.++|.+|.|||++++.+...
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~   22 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTL   22 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhh
Confidence            5789999999999999998653

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=88.81  E-value=0.22  Score=33.82  Aligned_cols=26  Identities=12%  Similarity=0.133  Sum_probs=22.7

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      +|+.++|.+|.|||++.|++..+...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~   26 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVF   26 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCcc
Confidence            47899999999999999999877654

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd04110 Rab35 Rab35 subfamily

Probab=88.81  E-value=0.27  Score=33.39  Aligned_cols=27  Identities=15%  Similarity=0.226  Sum_probs=23.5

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .|.++++|..|+|||++.+.|......
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~   32 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFS   32 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            588999999999999999999876543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=88.71  E-value=0.42  Score=30.41  Aligned_cols=25  Identities=20%  Similarity=0.159  Sum_probs=21.9

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +.+.++|.+|.|||++.+.|.....
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~~~   27 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQSYF   27 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCC
Confidence            6899999999999999999876554

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=88.66  E-value=0.25  Score=31.56  Aligned_cols=25  Identities=12%  Similarity=0.102  Sum_probs=21.4

Q ss_pred             eeeecccCccccchhhhhhhhhhcC
Q psy5599          36 LMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ++++|..|+||+++++.|.......
T Consensus         2 i~vvG~~~vGKtsl~~~~~~~~~~~   26 (162)
T PF00071_consen    2 IVVVGDSGVGKTSLINRLINGEFPE   26 (162)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSSTTS
T ss_pred             EEEECCCCCCHHHHHHHHHhhcccc
Confidence            6899999999999999998766443

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04127 Rab27A Rab27a subfamily

Probab=88.60  E-value=0.31  Score=31.86  Aligned_cols=26  Identities=8%  Similarity=0.109  Sum_probs=22.4

Q ss_pred             eEeeeeecccCccccchhhhhhhhhh
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .+.++++|.+|+|||++++.|.....
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~   29 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKF   29 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC
Confidence            47899999999999999999876554

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=88.59  E-value=0.28  Score=31.04  Aligned_cols=20  Identities=0%  Similarity=-0.009  Sum_probs=17.7

Q ss_pred             eeeecccCccccchhhhhhh
Q psy5599          36 LMVVDLKDVTSNVHYENFRC   55 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~   55 (79)
                      ++|+|.+|.||||+...+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999888763

...

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=88.42  E-value=0.25  Score=31.99  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=21.3

Q ss_pred             eeeeecccCccccchhhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .++++|.+++||++++|.+.....
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~  108 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKK  108 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            789999999999999999986654

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=88.34  E-value=0.25  Score=32.90  Aligned_cols=27  Identities=11%  Similarity=0.022  Sum_probs=23.3

Q ss_pred             CceEeeeeecccCccccchhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      .-.+++.++|.+|.|||++++.++...
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~   42 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRK   42 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            345688999999999999999998764

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04163 Era Era subfamily

Probab=88.22  E-value=0.28  Score=30.50  Aligned_cols=25  Identities=12%  Similarity=0.098  Sum_probs=21.6

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +.+.++|..|.|||++.|.+.....
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~~~   28 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQKI   28 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCce
Confidence            5689999999999999999886554

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=88.20  E-value=0.26  Score=33.42  Aligned_cols=26  Identities=8%  Similarity=0.125  Sum_probs=22.3

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      |.+.++|..|+|||++++.|......
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~   26 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFS   26 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            46889999999999999999876543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd00876 Ras Ras family

Probab=88.15  E-value=0.26  Score=31.01  Aligned_cols=23  Identities=13%  Similarity=0.078  Sum_probs=20.2

Q ss_pred             eeeeecccCccccchhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~   57 (79)
                      ++.++|.+|.|||++++.|....
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~   23 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGT   23 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999998655

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04132 Rho4_like Rho4-like subfamily

Probab=88.12  E-value=0.28  Score=32.42  Aligned_cols=25  Identities=12%  Similarity=0.084  Sum_probs=22.0

Q ss_pred             eeeeecccCccccchhhhhhhhhhc
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .++++|..|+|||++++.|......
T Consensus         2 ki~vvG~~~vGKTsli~~l~~~~~~   26 (187)
T cd04132           2 KIVVVGDGGCGKTCLLIVYSQGKFP   26 (187)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCcCC
Confidence            5889999999999999999877654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04177 RSR1 RSR1 subgroup

Probab=88.04  E-value=0.32  Score=31.68  Aligned_cols=27  Identities=11%  Similarity=0.202  Sum_probs=23.0

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      +|++.++|.+|.|||++.+.|......
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~   27 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFI   27 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            378999999999999999999866543

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=87.99  E-value=0.31  Score=35.42  Aligned_cols=27  Identities=15%  Similarity=0.251  Sum_probs=23.3

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      -.++++++|.+++|||+++|.+.....
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~  143 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKV  143 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence            358899999999999999999986543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PLN03108 Rab family protein; Provisional

Probab=87.97  E-value=0.34  Score=33.36  Aligned_cols=29  Identities=10%  Similarity=0.265  Sum_probs=24.6

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ..|.++++|..|.|||++++.|....+..
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~   33 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP   33 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence            46899999999999999999998765443

>cd04155 Arl3 Arl3 subfamily

Probab=87.81  E-value=0.39  Score=31.06  Aligned_cols=30  Identities=10%  Similarity=0.237  Sum_probs=24.9

Q ss_pred             hhCceEeeeeecccCccccchhhhhhhhhh
Q psy5599          29 KKGFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        29 K~g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +..-.+++.++|.+|.|||++++.+.....
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~   39 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDI   39 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCC
Confidence            334478999999999999999999987543

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=87.71  E-value=0.31  Score=32.07  Aligned_cols=25  Identities=12%  Similarity=0.165  Sum_probs=21.3

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      |.+.++|.+|+|||++++.|.....
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~   25 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEF   25 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC
Confidence            4689999999999999999876543

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04116 Rab9 Rab9 subfamily

Probab=87.68  E-value=0.39  Score=31.08  Aligned_cols=29  Identities=7%  Similarity=0.090  Sum_probs=24.4

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ..+++.++|..+.|||++.+.|.......
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~   32 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDT   32 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCc
Confidence            46889999999999999999998665543

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04106 Rab23_lke Rab23-like subfamily

Probab=87.31  E-value=0.31  Score=31.02  Aligned_cols=24  Identities=17%  Similarity=0.180  Sum_probs=20.9

Q ss_pred             eeeeecccCccccchhhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .+.++|.+|.|||++++.|.....
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~~   25 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGIF   25 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999999987544

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=87.07  E-value=0.3  Score=31.62  Aligned_cols=24  Identities=17%  Similarity=0.181  Sum_probs=20.6

Q ss_pred             eeeecccCccccchhhhhhhhhhc
Q psy5599          36 LMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ++++|..|+|||++++.|....+.
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~   24 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFP   24 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCC
Confidence            478999999999999999876653

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=86.96  E-value=0.34  Score=31.31  Aligned_cols=23  Identities=13%  Similarity=0.247  Sum_probs=19.6

Q ss_pred             eeeecccCccccchhhhhhhhhh
Q psy5599          36 LMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +.++|.+|+||+++++.|.....
T Consensus         2 i~vvG~~~~GKtsli~~~~~~~~   24 (165)
T cd04146           2 IAVLGASGVGKSALVVRFLTKRF   24 (165)
T ss_pred             EEEECCCCCcHHHHHHHHHhCcc
Confidence            67999999999999999876443

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01892 Miro2 Miro2 subfamily

Probab=86.87  E-value=0.42  Score=31.58  Aligned_cols=27  Identities=19%  Similarity=0.239  Sum_probs=24.0

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .|.+.++|.+|+|||++++.|......
T Consensus         4 ~~kv~~vG~~~vGKTsli~~~~~~~f~   30 (169)
T cd01892           4 VFLCFVLGAKGSGKSALLRAFLGRSFS   30 (169)
T ss_pred             EEEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            578999999999999999999887664

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=86.85  E-value=0.37  Score=30.09  Aligned_cols=25  Identities=12%  Similarity=0.189  Sum_probs=21.6

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +++.+.|.+|.||+++++.+.....
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~   26 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDR   26 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCce
Confidence            4688999999999999999987654

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=86.84  E-value=0.38  Score=31.35  Aligned_cols=27  Identities=7%  Similarity=-0.039  Sum_probs=17.8

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .=++.+.|++|+|||++.+.+....-.
T Consensus        24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~   50 (185)
T PF13191_consen   24 PRNLLLTGESGSGKTSLLRALLDRLAE   50 (185)
T ss_dssp             ---EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            345899999999999998877655443

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=86.81  E-value=0.46  Score=34.15  Aligned_cols=24  Identities=4%  Similarity=-0.099  Sum_probs=21.1

Q ss_pred             eeeeecccCccccchhhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .++++|.+|+|||+++|.+....-
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~  145 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVK  145 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhh
Confidence            588999999999999999986543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1162 Predicted GTPases [General function prediction only]

Probab=86.71  E-value=0.34  Score=36.88  Aligned_cols=23  Identities=4%  Similarity=-0.022  Sum_probs=19.9

Q ss_pred             eeeeecccCccccchhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~   57 (79)
                      .+-++|.||+|||+++|.+-.+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~  188 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPEL  188 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchh
Confidence            57789999999999999998643

>cd04118 Rab24 Rab24 subfamily

Probab=86.63  E-value=0.36  Score=32.12  Aligned_cols=26  Identities=8%  Similarity=0.199  Sum_probs=22.4

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      +.+.++|.+|+|||++++.|......
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~   26 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFL   26 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcC
Confidence            36889999999999999999876654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01859 MJ1464 MJ1464

Probab=86.48  E-value=0.27  Score=31.99  Aligned_cols=28  Identities=21%  Similarity=0.175  Sum_probs=23.8

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +..++++++|.+++||+++++.+..+..
T Consensus        99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~  126 (156)
T cd01859          99 GKEGKVGVVGYPNVGKSSIINALKGRHS  126 (156)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence            4567889999999999999999986543

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=86.41  E-value=0.47  Score=32.46  Aligned_cols=23  Identities=9%  Similarity=0.104  Sum_probs=20.7

Q ss_pred             EeeeeecccCccccchhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCR   56 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~   56 (79)
                      +++.++|.+|.|||+++|.++..
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~   24 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGV   24 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcc
Confidence            56889999999999999999864

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=86.21  E-value=0.39  Score=31.75  Aligned_cols=27  Identities=11%  Similarity=0.022  Sum_probs=23.9

Q ss_pred             CceEeeeeecccCccccchhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      +...++.++|.+|.|||++++.+....
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~   48 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRK   48 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999999754

>cd01893 Miro1 Miro1 subfamily

Probab=86.11  E-value=0.43  Score=31.06  Aligned_cols=25  Identities=4%  Similarity=0.123  Sum_probs=21.8

Q ss_pred             eeeeecccCccccchhhhhhhhhhc
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+.++|..|.|||++++.|......
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~   26 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFP   26 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCC
Confidence            5789999999999999999877653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01895 EngA2 EngA2 subfamily

Probab=86.10  E-value=0.44  Score=30.06  Aligned_cols=24  Identities=4%  Similarity=0.112  Sum_probs=21.2

Q ss_pred             EeeeeecccCccccchhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      +++.++|..|.|||++++.+....
T Consensus         3 ~~i~i~G~~~~GKstli~~l~~~~   26 (174)
T cd01895           3 IRIAIIGRPNVGKSSLVNALLGEE   26 (174)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCcc
Confidence            678999999999999999997654

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=86.05  E-value=0.43  Score=30.89  Aligned_cols=26  Identities=8%  Similarity=-0.138  Sum_probs=22.4

Q ss_pred             eeeeecccCccccchhhhhhhhhhcC
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      |+.++|..|.|||++.|.+.......
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~   26 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDI   26 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCC
Confidence            57899999999999999998876554

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=85.88  E-value=0.42  Score=30.67  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=21.3

Q ss_pred             eeeeecccCccccchhhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ++.++|..|.|||++++.|.....
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~   25 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKP   25 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Confidence            578999999999999999987654

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=85.84  E-value=0.66  Score=32.30  Aligned_cols=28  Identities=0%  Similarity=0.003  Sum_probs=22.8

Q ss_pred             EeeeeecccCccccchhhhhhhhhhcCC
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLAGL   61 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~~~   61 (79)
                      ++++++|.+|.|||++.|++........
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~   28 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKS   28 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS-
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceee
Confidence            5899999999999999999987665443

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=85.71  E-value=0.69  Score=30.67  Aligned_cols=27  Identities=7%  Similarity=0.210  Sum_probs=23.3

Q ss_pred             EeeeeecccCccccchhhhhhhhhhcC
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      +.+.++|..|+|||++...|.......
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~   29 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPD   29 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCC
Confidence            678999999999999999998776543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=85.68  E-value=0.38  Score=30.64  Aligned_cols=23  Identities=9%  Similarity=0.255  Sum_probs=20.4

Q ss_pred             eeeecccCccccchhhhhhhhhh
Q psy5599          36 LMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +.++|.+|.|||++++.|.....
T Consensus         2 i~i~G~~~~GKTsl~~~~~~~~~   24 (160)
T cd04156           2 VLLLGLDSAGKSTLLYKLKHAEL   24 (160)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCc
Confidence            67899999999999999987654

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PRK12288 GTPase RsgA; Reviewed

Probab=85.66  E-value=0.4  Score=36.53  Aligned_cols=24  Identities=8%  Similarity=-0.050  Sum_probs=20.6

Q ss_pred             eeeeecccCccccchhhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .++++|.||+||||++|.+.....
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~  230 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAE  230 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccc
Confidence            378999999999999999986543

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=85.50  E-value=0.61  Score=30.98  Aligned_cols=26  Identities=12%  Similarity=0.006  Sum_probs=22.2

Q ss_pred             eeeeecccCccccchhhhhhhhhhcC
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .++++|.++.||||+.+.+.......
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~~~   27 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELKRR   27 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhHc
Confidence            47899999999999999988776644

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=85.47  E-value=0.51  Score=29.27  Aligned_cols=23  Identities=4%  Similarity=-0.026  Sum_probs=19.1

Q ss_pred             eeeecccCccccchhhhhhhhhh
Q psy5599          36 LMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +.+.|.+|.|||++.+.|.....
T Consensus         7 ~~i~G~~G~GKT~~~~~~~~~~~   29 (131)
T PF13401_consen    7 LVISGPPGSGKTTLIKRLARQLN   29 (131)
T ss_dssp             EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred             cEEEcCCCCCHHHHHHHHHHHhH
Confidence            67899999999999999987653

>cd04175 Rap1 Rap1 subgroup

Probab=85.27  E-value=0.56  Score=30.12  Aligned_cols=25  Identities=16%  Similarity=0.174  Sum_probs=21.6

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +.+.++|..|.|||++.+.|.....
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~   26 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIF   26 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCC
Confidence            5788999999999999999986544

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=85.26  E-value=0.49  Score=32.43  Aligned_cols=27  Identities=15%  Similarity=0.228  Sum_probs=23.5

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .++++++|..++|||+++|.+......
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~  143 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRAC  143 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccc
Confidence            478999999999999999999876543

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK12289 GTPase RsgA; Reviewed

Probab=85.26  E-value=0.43  Score=36.54  Aligned_cols=23  Identities=9%  Similarity=-0.047  Sum_probs=20.2

Q ss_pred             eeeeecccCccccchhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~   57 (79)
                      .++++|.||+|||+++|.+....
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCcc
Confidence            38999999999999999998543

>cd01856 YlqF YlqF

Probab=85.24  E-value=0.5  Score=31.53  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=23.3

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      -.+.++++|.+++||+++++.+.....
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~  140 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKV  140 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence            347899999999999999999997654

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PLN03110 Rab GTPase; Provisional

Probab=85.09  E-value=0.61  Score=32.31  Aligned_cols=27  Identities=11%  Similarity=0.279  Sum_probs=23.4

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ..+.+.++|.+|+||+++++.|.....
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~   37 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEF   37 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC
Confidence            568999999999999999998876544

>PTZ00369 Ras-like protein; Provisional

Probab=84.96  E-value=0.57  Score=31.41  Aligned_cols=26  Identities=23%  Similarity=0.240  Sum_probs=22.6

Q ss_pred             eEeeeeecccCccccchhhhhhhhhh
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .|.+.++|..|+|||++.+.|.....
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~   30 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHF   30 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCC
Confidence            47899999999999999999886654

>cd04128 Spg1 Spg1p

Probab=84.48  E-value=0.54  Score=31.75  Aligned_cols=26  Identities=0%  Similarity=0.028  Sum_probs=22.1

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      +.+.++|.+|+|||+++..|......
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~   26 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFD   26 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            46889999999999999999876554

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PLN03118 Rab family protein; Provisional

Probab=84.41  E-value=0.73  Score=31.46  Aligned_cols=29  Identities=10%  Similarity=0.255  Sum_probs=24.5

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ..|.+.++|..|+|||++.+.|.......
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~   41 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVED   41 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCC
Confidence            46889999999999999999998766543

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=84.27  E-value=0.61  Score=30.24  Aligned_cols=27  Identities=15%  Similarity=0.087  Sum_probs=22.0

Q ss_pred             eeeecccCccccchhhhhhhhhhcCCC
Q psy5599          36 LMVVDLKDVTSNVHYENFRCRKLAGLG   62 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~~~L~~~~   62 (79)
                      +.++|..+.|||+|+|.|....+.+.+
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~   27 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSG   27 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSS
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCccc
Confidence            468999999999999999988775533

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd04154 Arl2 Arl2 subfamily

Probab=84.21  E-value=0.65  Score=30.40  Aligned_cols=28  Identities=7%  Similarity=0.230  Sum_probs=23.6

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .-.+.+.++|.+|.|||++++.|.....
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~   39 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDI   39 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC
Confidence            4557899999999999999999986644

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PRK04213 GTP-binding protein; Provisional

Probab=84.17  E-value=0.61  Score=31.25  Aligned_cols=28  Identities=11%  Similarity=0.138  Sum_probs=23.5

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +..+++.++|.+++|||++++.|.....
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~   34 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKV   34 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3457899999999999999999986553

>cd04144 Ras2 Ras2 subfamily

Probab=84.15  E-value=0.58  Score=31.38  Aligned_cols=25  Identities=12%  Similarity=0.050  Sum_probs=21.2

Q ss_pred             eeeecccCccccchhhhhhhhhhcC
Q psy5599          36 LMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      +.++|..|+|||++++.|....+..
T Consensus         2 i~ivG~~~vGKTsli~~l~~~~f~~   26 (190)
T cd04144           2 LVVLGDGGVGKTALTIQLCLNHFVE   26 (190)
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCc
Confidence            6799999999999999998766543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=83.71  E-value=0.75  Score=29.24  Aligned_cols=23  Identities=4%  Similarity=0.024  Sum_probs=19.4

Q ss_pred             eeeeecccCccccchhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~   57 (79)
                      +++++|.+|.||+++.+.+....
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999988777544

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=83.42  E-value=0.74  Score=33.67  Aligned_cols=27  Identities=11%  Similarity=0.266  Sum_probs=23.6

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      -.++++++|.+++|||+++|.+...+.
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~  146 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKI  146 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCc
Confidence            457899999999999999999987654

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=83.27  E-value=0.71  Score=29.02  Aligned_cols=24  Identities=4%  Similarity=0.134  Sum_probs=20.7

Q ss_pred             eeeeecccCccccchhhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .+.++|.+++|||++++.|.....
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~   25 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI   25 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc
Confidence            578999999999999999986654

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=83.26  E-value=0.63  Score=30.82  Aligned_cols=24  Identities=17%  Similarity=0.124  Sum_probs=21.3

Q ss_pred             eeeecccCccccchhhhhhhhhhc
Q psy5599          36 LMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      +.++|..|+|||++++.|......
T Consensus         3 i~ivG~~~vGKTsli~~~~~~~f~   26 (170)
T cd04108           3 VIVVGDLSVGKTCLINRFCKDVFD   26 (170)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCC
Confidence            689999999999999999987654

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04157 Arl6 Arl6 subfamily

Probab=83.03  E-value=0.64  Score=29.46  Aligned_cols=22  Identities=14%  Similarity=0.288  Sum_probs=19.4

Q ss_pred             eeeeecccCccccchhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCR   56 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~   56 (79)
                      ++.++|..+.|||++++.|...
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~   22 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPE   22 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHccc
Confidence            4689999999999999988865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01898 Obg Obg subfamily

Probab=82.93  E-value=0.59  Score=29.96  Aligned_cols=23  Identities=13%  Similarity=0.130  Sum_probs=20.0

Q ss_pred             eeeeecccCccccchhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~   57 (79)
                      ++.++|..+.|||++++.+....
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~   24 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAK   24 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998544

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04148 RGK RGK subfamily

Probab=82.91  E-value=0.64  Score=32.45  Aligned_cols=25  Identities=8%  Similarity=0.207  Sum_probs=21.4

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +.+.++|..|+|||++++.|.....
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~   25 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEY   25 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCc
Confidence            4689999999999999999975554

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04109 Rab28 Rab28 subfamily

Probab=82.87  E-value=0.65  Score=31.97  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=21.4

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      |.+.++|.+|+|||++++.|.....
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~   25 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGF   25 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCC
Confidence            4578999999999999999986554

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=82.82  E-value=0.78  Score=38.88  Aligned_cols=31  Identities=10%  Similarity=0.125  Sum_probs=26.8

Q ss_pred             hCceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          30 KGFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        30 ~g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      +.|.++++++|.+|+||++++|+++.+....
T Consensus       115 LdfslrIvLVGKTGVGKSSLINSILGekvf~  145 (763)
T TIGR00993       115 LDFSLNILVLGKSGVGKSATINSIFGEVKFS  145 (763)
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcccccc
Confidence            4677899999999999999999999876443

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=82.51  E-value=0.65  Score=31.69  Aligned_cols=25  Identities=4%  Similarity=0.132  Sum_probs=21.5

Q ss_pred             eeeeecccCccccchhhhhhhhhhc
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ++|++|.+|.||+|+.+.+..+.+.
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~   27 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR   27 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC
Confidence            5899999999999999988876553

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG3596 Predicted GTPase [General function prediction only]

Probab=82.46  E-value=0.73  Score=35.13  Aligned_cols=31  Identities=0%  Similarity=-0.001  Sum_probs=25.5

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcCCC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAGLG   62 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~~~   62 (79)
                      --.|+++.|..|.|||.++|.+|...+....
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~   68 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQGEVKEVS   68 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhccCceee
Confidence            4578899999999999999999965555543

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=82.46  E-value=0.73  Score=29.43  Aligned_cols=22  Identities=18%  Similarity=0.163  Sum_probs=19.2

Q ss_pred             EeeeeecccCccccchhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRC   55 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~   55 (79)
                      +.+.++|.+|.|||++.+.|..
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~   22 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHS   22 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3688999999999999988864

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04131 Rnd Rnd subfamily

Probab=82.31  E-value=0.92  Score=30.56  Aligned_cols=26  Identities=12%  Similarity=0.051  Sum_probs=22.4

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      +.+.++|.+|+|||+++..|......
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~   27 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYP   27 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCC
Confidence            56899999999999999999876554

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04121 Rab40 Rab40 subfamily

Probab=82.19  E-value=0.91  Score=31.18  Aligned_cols=27  Identities=11%  Similarity=0.162  Sum_probs=23.5

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ..+.++++|..|+|||+++..|.....
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~   31 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGST   31 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC
Confidence            458899999999999999999987554

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=82.11  E-value=1  Score=30.58  Aligned_cols=30  Identities=10%  Similarity=0.082  Sum_probs=24.9

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ...+.+.++|.+|+|||+++..|.......
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~   32 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE   32 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence            356789999999999999999998766543

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01874 Cdc42 Cdc42 subfamily

Probab=81.96  E-value=0.92  Score=30.22  Aligned_cols=25  Identities=16%  Similarity=0.159  Sum_probs=22.2

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +.+.++|..|+|||+++..|.....
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f   26 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKF   26 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC
Confidence            6789999999999999999987665

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PRK07261 topology modulation protein; Provisional

Probab=81.90  E-value=0.85  Score=30.86  Aligned_cols=21  Identities=0%  Similarity=0.067  Sum_probs=18.1

Q ss_pred             eeeeecccCccccchhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRC   55 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~   55 (79)
                      +++++|.+|.||||+-..+-.
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999887653

>cd01875 RhoG RhoG subfamily

Probab=81.75  E-value=0.99  Score=30.48  Aligned_cols=26  Identities=12%  Similarity=0.077  Sum_probs=22.8

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      |.+.++|.+|+|||+++..|......
T Consensus         4 ~ki~~vG~~~vGKTsli~~~~~~~f~   29 (191)
T cd01875           4 IKCVVVGDGAVGKTCLLICYTTNAFP   29 (191)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            78999999999999999998876653

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01870 RhoA_like RhoA-like subfamily

Probab=81.72  E-value=0.88  Score=29.44  Aligned_cols=26  Identities=12%  Similarity=0.051  Sum_probs=22.0

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ..+.++|.+|.|||++...|......
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~   27 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFP   27 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            36889999999999999999876554

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04159 Arl10_like Arl10-like subfamily

Probab=81.56  E-value=1  Score=27.82  Aligned_cols=23  Identities=9%  Similarity=0.151  Sum_probs=19.8

Q ss_pred             eeeecccCccccchhhhhhhhhh
Q psy5599          36 LMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +.++|.+|.|||++++.+.....
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~   24 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQF   24 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCC
Confidence            56899999999999999987643

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=81.50  E-value=0.79  Score=30.10  Aligned_cols=23  Identities=9%  Similarity=0.239  Sum_probs=20.0

Q ss_pred             eeeecccCccccchhhhhhhhhh
Q psy5599          36 LMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +.++|..|+|||++++.|.....
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~   24 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERS   24 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            57899999999999999987643

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=81.49  E-value=0.94  Score=28.85  Aligned_cols=26  Identities=15%  Similarity=0.190  Sum_probs=21.8

Q ss_pred             eeeeecccCccccchhhhhhhhhhcC
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .+.++|..+.|||++++.|.......
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~   27 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAA   27 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhccccc
Confidence            37899999999999999998766544

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04112 Rab26 Rab26 subfamily

Probab=81.40  E-value=0.82  Score=30.68  Aligned_cols=25  Identities=16%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +.+.++|..|+|||++++.|.....
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~   25 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAF   25 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3578999999999999998876554

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=81.33  E-value=0.92  Score=30.99  Aligned_cols=27  Identities=19%  Similarity=0.203  Sum_probs=22.4

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      -.+.+.++|.+|.|||++.+.|.....
T Consensus         8 ~~~kv~liG~~g~GKTtLi~~~~~~~~   34 (215)
T PTZ00132          8 PEFKLILVGDGGVGKTTFVKRHLTGEF   34 (215)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHhCCC
Confidence            347899999999999999988776554

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=81.24  E-value=0.89  Score=30.15  Aligned_cols=26  Identities=12%  Similarity=0.216  Sum_probs=22.1

Q ss_pred             eEeeeeecccCccccchhhhhhhhhh
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .+.+.++|..|+|||++++.|.....
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~   38 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGES   38 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCC
Confidence            57899999999999999999965443

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd01871 Rac1_like Rac1-like subfamily

Probab=80.95  E-value=1  Score=30.00  Aligned_cols=26  Identities=12%  Similarity=0.111  Sum_probs=21.7

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      +.+.++|..|+|||+++..|....+.
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~   27 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFP   27 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            57899999999999999887765543

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=80.77  E-value=0.94  Score=28.25  Aligned_cols=20  Identities=5%  Similarity=0.049  Sum_probs=18.0

Q ss_pred             eeeecccCccccchhhhhhh
Q psy5599          36 LMVVDLKDVTSNVHYENFRC   55 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~   55 (79)
                      +.++|.+|.|||++.+.+..
T Consensus         2 i~l~G~~g~GKTtL~~~l~~   21 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTN   21 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhc
Confidence            56899999999999999984

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=80.50  E-value=0.95  Score=29.63  Aligned_cols=28  Identities=11%  Similarity=0.032  Sum_probs=23.6

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .-..+++++|.+++||++++|.+.....
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~  125 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLK  125 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHcccc
Confidence            3457799999999999999999987653

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=80.33  E-value=0.96  Score=30.30  Aligned_cols=27  Identities=11%  Similarity=0.250  Sum_probs=23.3

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+.+.++|..|.|||++++.|....+.
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~~~~   43 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKNDRLA   43 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence            478999999999999999999876543

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01894 EngA1 EngA1 subfamily

Probab=80.21  E-value=0.7  Score=28.89  Aligned_cols=20  Identities=15%  Similarity=0.350  Sum_probs=17.7

Q ss_pred             eecccCccccchhhhhhhhh
Q psy5599          38 VVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        38 vvglsglgkst~~e~~r~~~   57 (79)
                      ++|..|.|||++++.+..+.
T Consensus         2 l~G~~~~GKssl~~~l~~~~   21 (157)
T cd01894           2 IVGRPNVGKSTLFNRLTGRR   21 (157)
T ss_pred             ccCCCCCCHHHHHHHHhCCc
Confidence            68999999999999998664

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01878 HflX HflX subfamily

Probab=80.16  E-value=1.3  Score=29.77  Aligned_cols=27  Identities=7%  Similarity=0.062  Sum_probs=23.4

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      -.+++.++|..|.|||++++.+.....
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~   66 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADV   66 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchh
Confidence            358899999999999999999887653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	79
2qag_C	418	Crystal Structure Of Human Septin Trimer 267 Length		3e-10
2qag_A	361	Crystal Structure Of Human Septin Trimer 267 Length		3e-10
2qa5_A	315	Crystal Structure Of Sept2 G-Domain Length = 315		2e-09
2qnr_A	301	Human Septin 2 In Complex With Gdp Length = 301		1e-04
3tw4_A	271	Crystal Structure Of Human Septin 7 Gtpase Domain L		2e-04
3t5d_A	274	Crystal Structure Of Septin 7 In Complex With Gdp L		3e-04

>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267 Length = 418

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 31/32 (96%)
Query: 8  KEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
          K ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct: 6  KNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 37

>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267 Length = 361

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 31/38 (81%)
Query: 2  PERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
          P + I  E  GY+GFANLPNQV RK+VKKGFEFTLMVV
Sbjct: 6  PTQFINPETPGYVGFANLPNQVHRKSVKKGFEFTLMVV 43

>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain Length = 315

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 30/39 (76%)
Query: 1  MPERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
           P + I  E  GY+GFANLPNQV RK+VKKGFEFTL VV
Sbjct: 5  QPTQFINPETPGYVGFANLPNQVHRKSVKKGFEFTLXVV 43

>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp Length = 301

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/23 (82%), Positives = 21/23 (91%)
Query: 17 ANLPNQVFRKAVKKGFEFTLMVV 39
          +NLPNQV RK+VKKGFEFTL VV
Sbjct: 2  SNLPNQVHRKSVKKGFEFTLXVV 24

>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain Length = 271

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/22 (77%), Positives = 20/22 (90%)
Query: 40  DLKDVTSNVHYENFRCRKLAGL 61
           DLKDVT+NVHYEN+R RKLA +
Sbjct: 249 DLKDVTNNVHYENYRSRKLAAV 270

>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp Length = 274

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/21 (80%), Positives = 19/21 (90%)
Query: 40  DLKDVTSNVHYENFRCRKLAG 60
           DLKDVT+NVHYEN+R RKLA 
Sbjct: 254 DLKDVTNNVHYENYRSRKLAA 274

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	79
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	4e-12
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	1e-05
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	2e-11
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	8e-05
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	8e-10
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	7e-06
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	2e-08
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	3e-07
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	9e-07

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418

 Score = 58.7 bits (141), Expect = 4e-12
 Identities = 25/33 (75%), Positives = 31/33 (93%)

Query: 7  PKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVV 39
           K ++GY+GFANLPNQV+RK+VK+GFEFTLMVV
Sbjct: 5  QKNLEGYVGFANLPNQVYRKSVKRGFEFTLMVV 37

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418

 Score = 40.2 bits (93), Expect = 1e-05
 Identities = 20/34 (58%), Positives = 24/34 (70%)

Query: 39  VDLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNK 72
            DLKDVT+NVHYEN+R RKLA +  +G     NK
Sbjct: 276 QDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNK 309

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 57.1 bits (137), Expect = 2e-11
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 1  MPERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVD 40
          + E      + G++GF +LP+Q+  K+V +GF F ++ V 
Sbjct: 10 VGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVG 49

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 37.8 bits (87), Expect = 8e-05
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 40  DLKDVTSNVHYENFRCRKLAGLGTDG 65
           DL++ T   HYE +R  KL  +G   
Sbjct: 285 DLREQTHTRHYELYRRCKLEEMGFKD 310

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 361

 Score = 52.2 bits (124), Expect = 8e-10
 Identities = 28/39 (71%), Positives = 31/39 (79%)

Query: 2  PERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVD 40
          P + I  E  GY+GFANLPNQV RK+VKKGFEFTLMVV 
Sbjct: 6  PTQFINPETPGYVGFANLPNQVHRKSVKKGFEFTLMVVG 44

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 361

 Score = 41.0 bits (95), Expect = 7e-06
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 40  DLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNKWK 74
           DL++VT ++HYENFR  +L   G   +   +NK +
Sbjct: 286 DLQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQ 320

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301

 Score = 47.9 bits (113), Expect = 2e-08
 Identities = 20/23 (86%), Positives = 22/23 (95%)

Query: 17 ANLPNQVFRKAVKKGFEFTLMVV 39
          +NLPNQV RK+VKKGFEFTLMVV
Sbjct: 2  SNLPNQVHRKSVKKGFEFTLMVV 24

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301

 Score = 44.4 bits (104), Expect = 3e-07
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 40  DLKDVTSNVHYENFRCRKLAGLGTDGKPRLLNK 72
           DL++VT ++HYENFR  +L   G   +   +NK
Sbjct: 267 DLQEVTQDLHYENFRSERLKRGGRKVENEDMNK 299

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Length = 274

 Score = 43.2 bits (101), Expect = 9e-07
 Identities = 17/21 (80%), Positives = 19/21 (90%)

Query: 40  DLKDVTSNVHYENFRCRKLAG 60
           DLKDVT+NVHYEN+R RKLA 
Sbjct: 254 DLKDVTNNVHYENYRSRKLAA 274

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.06
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.02
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.78
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.69
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.58
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.52
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.15
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.31
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.14
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.03
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.61
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.34
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.28
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.39
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.35
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	93.17
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	93.07
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	92.85
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.81
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	92.68
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	92.67
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	92.67
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	92.65
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	92.64
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	92.58
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.53
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.49
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	92.45
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	92.3
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	92.28
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	92.24
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.24
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	92.2
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	92.12
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	92.03
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	92.01
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.01
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	91.95
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	91.94
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	91.93
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	91.91
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	91.9
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	91.86
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	91.86
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.8
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	91.73
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	91.71
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	91.66
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	91.63
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	91.52
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	91.5
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.43
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	91.37
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	91.33
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	91.31
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	91.31
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	91.27
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	91.12
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	91.04
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	91.02
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	90.94
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	90.9
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	90.88
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	90.8
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	90.7
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	90.7
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	90.7
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	90.67
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	90.59
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	90.59
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	90.56
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	90.53
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	90.52
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	90.48
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	90.36
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	90.3
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	90.3
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	90.28
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	90.28
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	90.26
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	90.24
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	90.21
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	90.11
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	90.07
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	90.01
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	89.92
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	89.8
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	89.76
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	89.74
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	89.73
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	89.66
2ged_A	193	SR-beta, signal recognition particle receptor beta	89.64
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	89.64
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	89.59
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	89.57
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	89.33
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	89.31
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	89.3
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	89.08
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	88.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	88.92
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	88.8
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	88.71
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	88.62
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	88.43
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	88.39
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	88.14
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	88.01
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	87.95
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	87.88
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	87.85
2hf9_A	226	Probable hydrogenase nickel incorporation protein	87.61
2fh5_B	214	SR-beta, signal recognition particle receptor beta	87.58
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	87.48
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	87.41
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	87.38
1nrj_B	218	SR-beta, signal recognition particle receptor beta	87.29
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	87.13
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	86.92
2wji_A	165	Ferrous iron transport protein B homolog; membrane	86.67
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	86.6
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	86.57
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	86.57
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	86.5
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	85.67
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	85.57
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	84.19
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	84.06
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	84.06
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	83.82
3llu_A	196	RAS-related GTP-binding protein C; structural geno	83.26
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	83.23
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	83.05
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	82.61
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	82.29
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	82.23
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	81.79
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	81.32

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.06  E-value=2.9e-12  Score=91.72  Aligned_cols=45  Identities=31%  Similarity=0.506  Sum_probs=42.8

Q ss_pred             eeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          14 IGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        14 ~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ||+++++|+.||||+++ .++|++||+++++.|++.|||+||+++|
T Consensus       225 wg~~~v~n~~h~df~~lr~~l~~~~~~~l~~~t~~~~ye~~r~~~l  270 (270)
T 3sop_A          225 WGIIEVENLNHCEFALLRDFVIRTHLQDLKEVTHNIHYETYRAKRL  270 (270)
T ss_dssp             C-CEESSCTTTCSHHHHHHHHHTTTHHHHHHHHHHTHHHHHHHHHC
T ss_pred             ceEEEeCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999 8999999999999999999999999875

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.02  E-value=7.6e-12  Score=90.30  Aligned_cols=52  Identities=29%  Similarity=0.440  Sum_probs=45.3

Q ss_pred             eeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhhcCCCCCCC
Q psy5599          14 IGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKLAGLGTDGK   66 (79)
Q Consensus        14 ~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L~~~~~~~~   66 (79)
                      ||+++++|+.||||+++ .++| +||+++++.|++.|||+||+++|..++..+.
T Consensus       241 wg~~~v~n~~h~df~~lr~~l~-~~~~~l~~~t~~~~ye~~r~~~l~~~~~~~~  293 (301)
T 2qnr_A          241 WGVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGGRKVE  293 (301)
T ss_dssp             TEEEETTCTTTCSHHHHHHHHH-HTHHHHHHHHHHTHHHHHHHHHHHC------
T ss_pred             CceEeeCCCccCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            99999999999999999 8999 9999999999999999999999999886543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.78  E-value=5.9e-11  Score=90.92  Aligned_cols=50  Identities=28%  Similarity=0.372  Sum_probs=42.4

Q ss_pred             eeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhhcCCCC
Q psy5599          14 IGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKLAGLGT   63 (79)
Q Consensus        14 ~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L~~~~~   63 (79)
                      ||+++|+|+.||||+++ .++|.+||+++++.|++.|||+||+++|..++.
T Consensus       258 WG~~even~~h~DF~~Lr~~l~~t~~~dL~~~T~~~~YE~yR~~~L~~~~~  308 (427)
T 2qag_B          258 WGTVQVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMGF  308 (427)
T ss_dssp             CCCCC-----CCSSHHHHHHHHHTSTTHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred             CceEEeCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999 899999999999999999999999999987653

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.69  E-value=6.1e-10  Score=82.17  Aligned_cols=49  Identities=31%  Similarity=0.478  Sum_probs=42.3

Q ss_pred             eeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhhcCCCC
Q psy5599          14 IGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKLAGLGT   63 (79)
Q Consensus        14 ~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L~~~~~   63 (79)
                      ||+++++|+.||+|+++ .++| +||+++++.|++.|||+||+++|...+.
T Consensus       260 wg~~~ven~~h~df~~Lr~~l~-~~~~dl~~~t~~~~ye~yr~~~l~~~~~  309 (361)
T 2qag_A          260 WGVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGGR  309 (361)
T ss_dssp             SCCEESSCC-CCTHHHHHHHHH-HCCGGGTHHHHTTTHHHHHTTTC-----
T ss_pred             CceEecCCCccCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999 8999 9999999999999999999999988663

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.58  E-value=1.6e-09  Score=76.07  Aligned_cols=46  Identities=43%  Similarity=0.548  Sum_probs=44.7

Q ss_pred             eeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          14 IGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        14 ~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ||+++++|..||+|.++ .++|++||+++...|++.|||+||+++|.
T Consensus       227 wg~~~ve~~~~~df~~lr~~l~~~~~~~l~~~t~~~~ye~yr~~~l~  273 (274)
T 3t5d_A          227 WGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLA  273 (274)
T ss_dssp             SCEEESSCTTTCSHHHHHHTTTTTTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             cceEEecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999 89999999999999999999999999885

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.52  E-value=1.4e-09  Score=82.58  Aligned_cols=49  Identities=41%  Similarity=0.510  Sum_probs=43.9

Q ss_pred             ceeeeeCCChHHHHHHhh-CceEeeeeecccCccccchhhhhhhhhhcCC
Q psy5599          13 YIGFANLPNQVFRKAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKLAGL   61 (79)
Q Consensus        13 ~~G~~~lpnq~~~~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L~~~   61 (79)
                      .||+++|+|+.||+|+++ .++|.+|+.++++.|++.|||+||+++|..+
T Consensus       249 ~wg~i~Ven~~h~df~~Lr~~Li~~~~~dl~~~T~~~~Ye~yR~~~l~~~  298 (418)
T 2qag_C          249 PWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAV  298 (418)
T ss_dssp             SSCEECC--CCSSTTTHHHHHHHTTSHHHHHHHHHHHTHHHHHHHHCC--
T ss_pred             cceEEEecchhhCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence            499999999999999999 8999999999999999999999999999987

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.15  E-value=4.1e-07  Score=66.98  Aligned_cols=54  Identities=50%  Similarity=0.730  Sum_probs=37.8

Q ss_pred             CCCCCCccCCceeeeeCCChHHHHHHhhCceEeeeeecccCccccchhhhhhhh
Q psy5599           3 ERKIPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCR   56 (79)
Q Consensus         3 ~~~~~~~~~~~~G~~~lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r~~   56 (79)
                      ..+...+..+++|+.+++.+.+++.++.++.|+++++|.+|.|||++++.++..
T Consensus         7 ~~~~~~~~~~~v~~~~l~~~~~~k~~~~~~~~~I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A            7 TQFINPETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             --------------CCHHHHHHTHHHHHCCEECEEECCCTTSCHHHHHHHHTTC
T ss_pred             cccCcCCCCceEEeccchHHhCCeeecCCCCEEEEEEcCCCCCHHHHHHHHhCC
Confidence            345566778999999999999999999999999999999999999999997654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.31  E-value=7.6e-05  Score=51.89  Aligned_cols=51  Identities=12%  Similarity=0.180  Sum_probs=41.5

Q ss_pred             ccCCceeeeeCCChHHHH-------HHhhC-ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599           9 EVDGYIGFANLPNQVFRK-------AVKKG-FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus         9 ~~~~~~G~~~lpnq~~~~-------~~K~g-~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+|+|+.++|++.+..       ..+.+ -.++++++|.+|.|||+++|.|+...+.
T Consensus         7 ~~~~~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~~~   65 (270)
T 1h65_A            7 TVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVV   65 (270)
T ss_dssp             -CEECGGGGGSCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCS
T ss_pred             hhhhhcchhhccHHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCCcc
Confidence            446789999999997766       44444 4899999999999999999999977653

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.14  E-value=8.8e-05  Score=56.19  Aligned_cols=52  Identities=50%  Similarity=0.848  Sum_probs=37.0

Q ss_pred             CCccCCceeeeeCCChHHHHHHhhCceEeeeeecccCccccchhhhhhhhhh
Q psy5599           7 PKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus         7 ~~~~~~~~G~~~lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +..+.+++++.+++.+.....+..|+.|+++++|.+|.||||+++.|.....
T Consensus         5 ~~~~~~~l~~~~l~~~y~~~~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C            5 QKNLEGYVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             ----------CCCCCCTTTTTCC-CCCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred             cccCcCcEEEEecceeECCEEEecCCCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3456678999999998877777789999999999999999999999987654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.03  E-value=0.00016  Score=50.48  Aligned_cols=32  Identities=31%  Similarity=0.422  Sum_probs=24.6

Q ss_pred             HhhCceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          28 VKKGFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        28 ~K~g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      +++|+.|+++++|.+|+|||+++|+++.....
T Consensus         3 ~~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~   34 (274)
T 3t5d_A            3 LGSGFEFTLMVVGESGLGKSTLINSLFLTDLY   34 (274)
T ss_dssp             ----CEEEEEEEECTTSSHHHHHHHHSSSCC-
T ss_pred             CcCccEEEEEEECCCCCCHHHHHHHHhCCCcc
Confidence            56799999999999999999999998765543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.61  E-value=0.00062  Score=48.72  Aligned_cols=39  Identities=51%  Similarity=0.695  Sum_probs=21.9

Q ss_pred             eCCChHHHHHHhhCceEeeeeecccCccccchhhhhhhh
Q psy5599          18 NLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCR   56 (79)
Q Consensus        18 ~lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r~~   56 (79)
                      +|+.+...+.+..++.|+++++|.+|.||||+++.++..
T Consensus         3 ~l~~~~~~~~~l~~~~~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A            3 NLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             ---------------CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred             CCcceECCEEEEcCCCEEEEEECCCCCCHHHHHHHHhCC
Confidence            567777777788899999999999999999999997764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.34  E-value=0.0016  Score=49.74  Aligned_cols=53  Identities=25%  Similarity=0.479  Sum_probs=38.3

Q ss_pred             CCCccCCceeeeeCCChHHHHHHhhCceEeeeeecccCccccchhhhhhhhhh
Q psy5599           6 IPKEVDGYIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus         6 ~~~~~~~~~G~~~lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ....+.+.+++...+.+..+..++.|..|+++++|.+|.||||+++.+....+
T Consensus        15 ~~l~~~~~~~y~~~~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l   67 (427)
T 2qag_B           15 RTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF   67 (427)
T ss_dssp             --CCCCCCC-CC--CHHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred             ceEEEeeEEEECCeecCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc
Confidence            45566677788776655566666679999999999999999999999987643

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.28  E-value=0.0018  Score=45.81  Aligned_cols=29  Identities=17%  Similarity=0.336  Sum_probs=24.8

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      |.|+++++|.+|.||||+++.++......
T Consensus         1 f~f~v~lvG~nGaGKSTLln~L~g~~~~~   29 (270)
T 3sop_A            1 FDFNIMVVGQSGLGKSTLVNTLFKSQVSR   29 (270)
T ss_dssp             CEEEEEEEESSSSSHHHHHHHHHHHHC--
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            78999999999999999999999765443

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.39  E-value=0.0052  Score=39.82  Aligned_cols=46  Identities=7%  Similarity=-0.018  Sum_probs=23.8

Q ss_pred             ceeeeeCCChHHHHHHhhCceEeeeeecccCccccchhhhhhhhhh
Q psy5599          13 YIGFANLPNQVFRKAVKKGFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        13 ~~G~~~lpnq~~~~~~K~g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      +-|++.++++.+.+.....-.+++.++|..|.||+++++.|.....
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~   53 (199)
T 2p5s_A            8 HHHSSGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEF   53 (199)
T ss_dssp             --------------------CEEEEEESSTTSSHHHHHHHHHHCCC
T ss_pred             ccccCCcccccccCCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCC
Confidence            4578888888888888888889999999999999999999987654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.35  E-value=0.055  Score=33.07  Aligned_cols=29  Identities=10%  Similarity=0.104  Sum_probs=25.0

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ..+++.++|..|.|||++++.|.......
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~   32 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK   32 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCC
Confidence            46899999999999999999998765543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=93.17  E-value=0.059  Score=33.12  Aligned_cols=29  Identities=10%  Similarity=0.167  Sum_probs=25.0

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|.+|.|||++++.|......
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~   32 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFN   32 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCC
Confidence            35689999999999999999999876654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.07  E-value=0.064  Score=32.74  Aligned_cols=28  Identities=14%  Similarity=0.158  Sum_probs=24.1

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .+++.++|..|.|||++++.|.......
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~   30 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE   30 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            4789999999999999999998766543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=92.85  E-value=0.072  Score=32.34  Aligned_cols=27  Identities=11%  Similarity=0.111  Sum_probs=23.8

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+++.++|..|.|||++++.|......
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~   30 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFV   30 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccC
Confidence            478999999999999999999876643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.81  E-value=0.073  Score=32.58  Aligned_cols=27  Identities=11%  Similarity=0.075  Sum_probs=23.9

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+++.++|..|.|||++++.|......
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~   32 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDSFD   32 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCC
Confidence            589999999999999999999877643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=92.68  E-value=0.079  Score=32.33  Aligned_cols=29  Identities=14%  Similarity=0.165  Sum_probs=24.5

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      -.+++.++|..|.|||++++.|.......
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~   33 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHE   33 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCT
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence            35889999999999999999998765443

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=92.67  E-value=0.077  Score=32.38  Aligned_cols=27  Identities=19%  Similarity=0.207  Sum_probs=23.4

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+++.++|..|.|||++++.|......
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~   29 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFV   29 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            478999999999999999999876543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=92.67  E-value=0.08  Score=31.97  Aligned_cols=28  Identities=18%  Similarity=0.204  Sum_probs=23.9

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .+++.++|..|.|||++++.|.......
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~   30 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVD   30 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCcc
Confidence            4789999999999999999998765543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=92.65  E-value=0.08  Score=32.10  Aligned_cols=28  Identities=14%  Similarity=0.202  Sum_probs=24.0

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .+++.++|..|.|||++++.|.......
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~   30 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIE   30 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcc
Confidence            4789999999999999999998766543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=92.64  E-value=0.051  Score=33.31  Aligned_cols=27  Identities=11%  Similarity=0.153  Sum_probs=23.7

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+++.++|..|.|||++++.|......
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~   29 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFN   29 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCC
Confidence            588999999999999999999876543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=92.58  E-value=0.084  Score=32.96  Aligned_cols=28  Identities=18%  Similarity=0.223  Sum_probs=24.3

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .|++.++|..|.|||++++.|.......
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~   31 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNHFVD   31 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence            5889999999999999999998766543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.53  E-value=0.057  Score=33.50  Aligned_cols=28  Identities=11%  Similarity=0.165  Sum_probs=24.2

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      -.+++.++|..|.|||++++.|......
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~   33 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNKFD   33 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            4689999999999999999999876543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.49  E-value=0.081  Score=32.33  Aligned_cols=27  Identities=11%  Similarity=0.121  Sum_probs=23.5

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+++.++|..|.|||++++.|......
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~   29 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFR   29 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            578999999999999999999876543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=92.45  E-value=0.082  Score=32.61  Aligned_cols=30  Identities=13%  Similarity=0.306  Sum_probs=25.7

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ...+++.++|..|.|||++++.|.......
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~   42 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMA   42 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence            457999999999999999999998776543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=92.30  E-value=0.088  Score=32.47  Aligned_cols=29  Identities=14%  Similarity=0.210  Sum_probs=24.5

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      -.+++.++|..|.|||++++.|.......
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~   41 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDN   41 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence            35899999999999999999998765543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=92.28  E-value=0.063  Score=33.50  Aligned_cols=29  Identities=7%  Similarity=0.117  Sum_probs=25.0

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|..|.|||++++.|......
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~   37 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFN   37 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            45789999999999999999999876543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=92.24  E-value=0.064  Score=33.18  Aligned_cols=28  Identities=18%  Similarity=0.035  Sum_probs=24.1

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      -.+++.++|..|.|||++++.|......
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~~~   35 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSYFV   35 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCcCc
Confidence            3589999999999999999999876543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.24  E-value=0.054  Score=33.18  Aligned_cols=26  Identities=8%  Similarity=0.234  Sum_probs=22.7

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      +++.++|.+|+|||++++.|......
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~   26 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIV   26 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcC
Confidence            47899999999999999999876654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=92.20  E-value=0.095  Score=33.24  Aligned_cols=29  Identities=14%  Similarity=0.203  Sum_probs=25.0

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      -.+++.++|..|.|||++++.|.......
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~   47 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPD   47 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence            46899999999999999999998766543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=92.12  E-value=0.1  Score=32.68  Aligned_cols=30  Identities=17%  Similarity=0.071  Sum_probs=25.3

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .-.+++.++|..|.|||++++.|.......
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~   45 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVD   45 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence            457999999999999999999999765443

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=92.03  E-value=0.1  Score=32.41  Aligned_cols=30  Identities=7%  Similarity=0.025  Sum_probs=25.5

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ...+++.++|..|.|||++++.|.......
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~   39 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVE   39 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTT
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCC
Confidence            456899999999999999999998766543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=92.01  E-value=0.071  Score=32.99  Aligned_cols=29  Identities=7%  Similarity=0.077  Sum_probs=24.5

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .-.+++.++|..|.|||++++.|......
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~   34 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYS   34 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCC
Confidence            45789999999999999999999876543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.01  E-value=0.1  Score=32.43  Aligned_cols=28  Identities=11%  Similarity=0.080  Sum_probs=24.5

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      -.+++.++|..|.|||++++.|....+.
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~   44 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDEFV   44 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCC
Confidence            3689999999999999999999976643

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=91.95  E-value=0.071  Score=32.97  Aligned_cols=29  Identities=14%  Similarity=0.211  Sum_probs=24.0

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .-.+++.++|..|.|||++++.|......
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~   35 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS   35 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC--
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            46789999999999999999999866544

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=91.94  E-value=0.075  Score=33.59  Aligned_cols=27  Identities=19%  Similarity=0.210  Sum_probs=23.8

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+++.++|..|.|||++++.|......
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~~~~   47 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQNHFV   47 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcCCCc
Confidence            589999999999999999999876544

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.93  E-value=0.069  Score=33.20  Aligned_cols=29  Identities=17%  Similarity=0.234  Sum_probs=25.1

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|..|.|||++++.|......
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~   36 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFL   36 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCC
Confidence            45689999999999999999999876653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=91.91  E-value=0.094  Score=32.49  Aligned_cols=27  Identities=7%  Similarity=0.042  Sum_probs=23.4

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      -.+++.++|..|.|||++++.|.....
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~   31 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETF   31 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGT
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcC
Confidence            358899999999999999999986654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.90  E-value=0.079  Score=33.79  Aligned_cols=29  Identities=10%  Similarity=0.265  Sum_probs=25.6

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...|++.++|..|.|||++++.|......
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~   49 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFT   49 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCC
Confidence            57899999999999999999999976644

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=91.86  E-value=0.12  Score=32.08  Aligned_cols=28  Identities=14%  Similarity=0.182  Sum_probs=23.9

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .+++.++|.+|.|||++++.|....+..
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~   32 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTNAFPG   32 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence            5789999999999999999998766543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=91.86  E-value=0.11  Score=32.54  Aligned_cols=30  Identities=17%  Similarity=0.310  Sum_probs=25.4

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ...+++.++|..|.|||++++.|.......
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~   37 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD   37 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence            456899999999999999999998766543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.80  E-value=0.11  Score=32.93  Aligned_cols=30  Identities=13%  Similarity=0.285  Sum_probs=25.9

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ...+++.++|..|.|||++++.|.......
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~   52 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSH   52 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCC
Confidence            567999999999999999999998766543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=91.73  E-value=0.11  Score=33.02  Aligned_cols=28  Identities=11%  Similarity=0.080  Sum_probs=24.4

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      -.+++.++|..|.|||++++.|....+.
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~   40 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYDEFV   40 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            4689999999999999999999876643

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=91.71  E-value=0.11  Score=32.48  Aligned_cols=29  Identities=3%  Similarity=0.000  Sum_probs=25.0

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|..|.|||++++.|......
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~   33 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFH   33 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCC
Confidence            34689999999999999999999987654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=91.66  E-value=0.071  Score=33.42  Aligned_cols=26  Identities=12%  Similarity=0.144  Sum_probs=22.7

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      +++.++|..|.|||++++.|......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~   27 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVR   27 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCc
Confidence            67899999999999999999876543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=91.63  E-value=0.074  Score=32.81  Aligned_cols=28  Identities=7%  Similarity=0.033  Sum_probs=22.5

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      -.+++.++|..|+|||++++.|......
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~   30 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQER   30 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC---
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCc
Confidence            3588999999999999999999876543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=91.52  E-value=0.13  Score=32.44  Aligned_cols=30  Identities=13%  Similarity=0.215  Sum_probs=25.7

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ...+++.++|..|.|||++++.|.......
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~   43 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE   43 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCC
Confidence            467899999999999999999998766543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=91.50  E-value=0.076  Score=32.63  Aligned_cols=28  Identities=7%  Similarity=0.211  Sum_probs=24.0

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      -.+++.++|..|.|||++++.|......
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~   33 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVV   33 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3578999999999999999999876543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.43  E-value=0.12  Score=33.01  Aligned_cols=29  Identities=10%  Similarity=-0.001  Sum_probs=25.1

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .-.+++.++|..|.|||++++.|......
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~   49 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFD   49 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCC
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence            45799999999999999999999876643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=91.37  E-value=0.091  Score=33.49  Aligned_cols=29  Identities=10%  Similarity=0.288  Sum_probs=25.2

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|..|.|||++++.|......
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~   47 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQ   47 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence            45789999999999999999999876654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=91.33  E-value=0.068  Score=33.67  Aligned_cols=27  Identities=15%  Similarity=0.298  Sum_probs=23.4

Q ss_pred             CceEeeeeecccCccccchhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      .-.+++.++|..|.|||++++.|....
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            356899999999999999999998765

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=91.31  E-value=0.093  Score=33.30  Aligned_cols=29  Identities=10%  Similarity=0.250  Sum_probs=25.3

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|..|.|||++++.|......
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~   48 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFT   48 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            45799999999999999999999877654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=91.31  E-value=0.094  Score=32.22  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.7

Q ss_pred             eEeeeeecccCccccchhhhhhh
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRC   55 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~   55 (79)
                      .|++.++|.+|.|||++++.|..
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh
Confidence            47899999999999999999864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=91.27  E-value=0.13  Score=32.95  Aligned_cols=29  Identities=7%  Similarity=0.251  Sum_probs=25.0

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|..|.|||++++.|......
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~   34 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFT   34 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            35689999999999999999999876654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=91.12  E-value=0.091  Score=32.76  Aligned_cols=28  Identities=14%  Similarity=0.031  Sum_probs=24.7

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .+.+.++|..|+|||++++.|.......
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~   34 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTGSYQV   34 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHSCCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence            5889999999999999999999876654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.04  E-value=0.14  Score=32.40  Aligned_cols=29  Identities=10%  Similarity=0.108  Sum_probs=24.6

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .-.+++.++|..|.|||++++.|......
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~   34 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFR   34 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCC
Confidence            34689999999999999999999876554

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=91.02  E-value=0.15  Score=32.43  Aligned_cols=29  Identities=14%  Similarity=0.103  Sum_probs=25.7

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|..|+|||++++.|....+.
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~   49 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEIP   49 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCCC
Confidence            56799999999999999999999987653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=90.94  E-value=0.091  Score=31.95  Aligned_cols=24  Identities=8%  Similarity=0.259  Sum_probs=21.7

Q ss_pred             EeeeeecccCccccchhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      .++.++|..|.|||++++.|....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999998765

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=90.90  E-value=0.16  Score=32.69  Aligned_cols=31  Identities=6%  Similarity=-0.031  Sum_probs=25.6

Q ss_pred             hCceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          30 KGFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        30 ~g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ..-.+++.++|..|.|||++++.|.......
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~   51 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSE   51 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCS
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCC
Confidence            3457899999999999999999999876553

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=90.88  E-value=0.16  Score=31.91  Aligned_cols=27  Identities=7%  Similarity=0.178  Sum_probs=23.9

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+++.++|..|.||+++++.|......
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~   41 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFD   41 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            589999999999999999999876644

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=90.80  E-value=0.091  Score=36.03  Aligned_cols=44  Identities=18%  Similarity=0.263  Sum_probs=32.3

Q ss_pred             eeeeCCChHHH-------HHHhh-CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          15 GFANLPNQVFR-------KAVKK-GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        15 G~~~lpnq~~~-------~~~K~-g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      |+.++++....       ..... .-.+++.++|..|.|||+++|.|.....
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~   61 (262)
T 3def_A           10 GFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQV   61 (262)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSCC
T ss_pred             HHhhccHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            77777764332       22222 3579999999999999999999997664

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=90.70  E-value=0.087  Score=33.29  Aligned_cols=27  Identities=15%  Similarity=0.288  Sum_probs=23.4

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      -.+++.++|..|+|||++++.|.....
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~~~   46 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMNEV   46 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTTSC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC
Confidence            358899999999999999999987654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=90.70  E-value=0.17  Score=32.29  Aligned_cols=29  Identities=7%  Similarity=0.180  Sum_probs=24.7

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .-.+++.++|..|.|||++++.|......
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~   34 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFS   34 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCC
Confidence            45789999999999999999999876644

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=90.70  E-value=0.16  Score=32.26  Aligned_cols=29  Identities=14%  Similarity=0.119  Sum_probs=25.0

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .-.+++.++|..|.|||++++.|......
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~   48 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFN   48 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            34689999999999999999999876654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=90.67  E-value=0.11  Score=32.51  Aligned_cols=28  Identities=14%  Similarity=0.239  Sum_probs=12.4

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ...+++.++|..|+|||++++.|.....
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~   33 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAF   33 (183)
T ss_dssp             SEEEEEEEECCCCC--------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCC
Confidence            3568999999999999999999886543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=90.59  E-value=0.085  Score=32.34  Aligned_cols=26  Identities=8%  Similarity=0.079  Sum_probs=21.1

Q ss_pred             eEeeeeecccCccccchhhhhhhhhh
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .|++.++|.+|.|||++++.|.....
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~   27 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVED   27 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC--
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccc
Confidence            46899999999999999999875443

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=90.59  E-value=0.18  Score=31.48  Aligned_cols=28  Identities=7%  Similarity=0.064  Sum_probs=23.9

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      -.+++.++|..|.|||++++.|......
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~   32 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFV   32 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCC
Confidence            3688999999999999999999865543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=90.56  E-value=0.12  Score=33.00  Aligned_cols=29  Identities=10%  Similarity=0.227  Sum_probs=24.8

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .-.+++.++|..|+|||++++.|......
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~   47 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFI   47 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCC
Confidence            45789999999999999999999877643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.53  E-value=0.16  Score=32.56  Aligned_cols=28  Identities=11%  Similarity=0.114  Sum_probs=23.9

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      -.+++.++|..|+||+++++.|......
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~   46 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDKFN   46 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCCCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            4589999999999999999999876653

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=90.52  E-value=0.11  Score=33.60  Aligned_cols=29  Identities=17%  Similarity=0.303  Sum_probs=23.1

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|..|.|||++++.|......
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~   51 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK   51 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC----
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCC
Confidence            56799999999999999999999866554

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=90.48  E-value=0.084  Score=33.40  Aligned_cols=26  Identities=12%  Similarity=0.019  Sum_probs=22.7

Q ss_pred             ceEeeeeecccCccccchhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      -.+++.++|..|.|||++++.|....
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            46889999999999999999998765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=90.36  E-value=0.13  Score=32.98  Aligned_cols=30  Identities=10%  Similarity=0.070  Sum_probs=25.8

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .-.+++.++|.+|+|||++++.|.......
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~   47 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQ   47 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHSSCCC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            567999999999999999999998766543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.30  E-value=0.17  Score=32.31  Aligned_cols=30  Identities=13%  Similarity=0.132  Sum_probs=25.1

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .-.+++.++|..|.|||++++.|.......
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~   55 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIW   55 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCc
Confidence            456899999999999999999999876543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=90.30  E-value=0.11  Score=33.66  Aligned_cols=28  Identities=11%  Similarity=0.193  Sum_probs=24.4

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ...+++.++|..|.|||++++.|.....
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~   50 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKF   50 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCC
Confidence            5679999999999999999999986544

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=90.28  E-value=0.14  Score=31.72  Aligned_cols=28  Identities=11%  Similarity=0.119  Sum_probs=23.8

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .+++.++|..|.|||++++.|.......
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~   35 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHSKVTE   35 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTTCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcccc
Confidence            5679999999999999999998765543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=90.28  E-value=0.099  Score=33.19  Aligned_cols=26  Identities=8%  Similarity=0.166  Sum_probs=23.0

Q ss_pred             ceEeeeeecccCccccchhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      -.+++.++|..|.|||++++.|....
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCC
Confidence            35889999999999999999998766

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=90.26  E-value=0.17  Score=32.43  Aligned_cols=29  Identities=14%  Similarity=0.248  Sum_probs=25.0

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|..|.|||++++.|......
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~   34 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYT   34 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            45689999999999999999999876654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=90.24  E-value=0.094  Score=32.62  Aligned_cols=28  Identities=7%  Similarity=-0.007  Sum_probs=23.5

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ...+++.++|..|.|||++++.|.....
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~   33 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTF   33 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3458899999999999999999987654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.21  E-value=0.13  Score=33.79  Aligned_cols=29  Identities=14%  Similarity=0.251  Sum_probs=25.3

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|.+|+|||++++.|......
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~   52 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFP   52 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCC
Confidence            56799999999999999999999876543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.11  E-value=0.13  Score=33.37  Aligned_cols=30  Identities=13%  Similarity=0.022  Sum_probs=25.5

Q ss_pred             hCceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          30 KGFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        30 ~g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .-..+++.++|..|.|||++++.|......
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~   51 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFP   51 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHHSSCC
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhcCCCC
Confidence            345789999999999999999999876543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=90.01  E-value=0.12  Score=32.95  Aligned_cols=30  Identities=10%  Similarity=0.067  Sum_probs=21.8

Q ss_pred             hCceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          30 KGFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        30 ~g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ..-.+++.++|..|+|||++++.|......
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~   46 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYP   46 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC----
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            356789999999999999999999876543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=89.92  E-value=0.12  Score=33.14  Aligned_cols=29  Identities=14%  Similarity=0.360  Sum_probs=23.0

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|..|.|||++++.|......
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~   52 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFC   52 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC----
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            46789999999999999999999876543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=89.80  E-value=0.11  Score=32.48  Aligned_cols=27  Identities=15%  Similarity=0.143  Sum_probs=23.6

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      -.+++.++|..|.|||++++.|.....
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~   48 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRKI   48 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCcc
Confidence            457899999999999999999987763

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=89.76  E-value=0.15  Score=32.35  Aligned_cols=28  Identities=11%  Similarity=0.096  Sum_probs=24.7

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ..+++.++|..|+||+++++.|....+.
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~~   44 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAFP   44 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5689999999999999999999977543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=89.74  E-value=0.11  Score=33.78  Aligned_cols=29  Identities=3%  Similarity=0.092  Sum_probs=24.4

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...|++.++|..|.|||++++.|......
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~   37 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFE   37 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTT
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            57899999999999999999999865543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=89.73  E-value=0.13  Score=34.41  Aligned_cols=29  Identities=10%  Similarity=0.125  Sum_probs=24.8

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .-.+++.++|.+|.|||+++|.+......
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~   55 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVF   55 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcC
Confidence            46799999999999999999999876653

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=89.66  E-value=0.17  Score=33.01  Aligned_cols=29  Identities=10%  Similarity=0.151  Sum_probs=24.7

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|..|.|||++++.|......
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~   41 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFE   41 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHHT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            46789999999999999999997766543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=89.64  E-value=0.12  Score=32.64  Aligned_cols=28  Identities=0%  Similarity=0.125  Sum_probs=24.0

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .-.+++.++|..|.|||++++.|.....
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~   73 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSV   73 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3457899999999999999999987653

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=89.64  E-value=0.14  Score=33.48  Aligned_cols=28  Identities=7%  Similarity=-0.028  Sum_probs=22.3

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      -.+++.++|..|+|||++++.|......
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~   60 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFP   60 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC----
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCC
Confidence            4689999999999999999999876543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=89.59  E-value=0.12  Score=33.29  Aligned_cols=27  Identities=15%  Similarity=0.241  Sum_probs=23.4

Q ss_pred             CceEeeeeecccCccccchhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      ...+++.++|.+|.|||++++.|....
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~   57 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDT   57 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCC
Confidence            457999999999999999999987543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=89.57  E-value=0.23  Score=31.39  Aligned_cols=29  Identities=10%  Similarity=0.094  Sum_probs=24.4

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|..|+|||++++.|......
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~   33 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP   33 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            35689999999999999999999876543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=89.33  E-value=0.13  Score=34.06  Aligned_cols=27  Identities=7%  Similarity=0.082  Sum_probs=23.8

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+++.++|.+|+|||++++.|......
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~~~~   55 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRANVD   55 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTTCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence            578999999999999999999876653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=89.31  E-value=0.16  Score=32.89  Aligned_cols=24  Identities=21%  Similarity=0.182  Sum_probs=21.3

Q ss_pred             CceEeeeeecccCccccchhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFR   54 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r   54 (79)
                      .-.+.+.++|.+|+|||++++.|.
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHH
Confidence            457899999999999999999985

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.30  E-value=0.15  Score=32.29  Aligned_cols=28  Identities=14%  Similarity=0.261  Sum_probs=24.2

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .-.+++.++|..|.|||++++.|.....
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~   41 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEV   41 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4578999999999999999999986543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=89.08  E-value=0.13  Score=32.63  Aligned_cols=26  Identities=15%  Similarity=0.179  Sum_probs=7.3

Q ss_pred             CceEeeeeecccCccccchhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCR   56 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~   56 (79)
                      ...+++.++|.+|.|||++++.|...
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEEEC-----------------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhC
Confidence            35689999999999999999999876

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=88.97  E-value=0.19  Score=32.43  Aligned_cols=29  Identities=10%  Similarity=0.068  Sum_probs=25.1

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|..|.|||++++.|......
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~   51 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFP   51 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCC
Confidence            45789999999999999999999876653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=88.92  E-value=0.15  Score=31.79  Aligned_cols=27  Identities=7%  Similarity=0.208  Sum_probs=23.6

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      -.+++.++|..|.|||++++.|.....
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~   43 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEV   43 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCc
Confidence            578999999999999999999986554

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=88.80  E-value=0.12  Score=36.14  Aligned_cols=25  Identities=4%  Similarity=0.238  Sum_probs=22.6

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ++++++|.+|+|||+++|.+.....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            7999999999999999999986654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=88.71  E-value=0.24  Score=32.14  Aligned_cols=30  Identities=17%  Similarity=0.214  Sum_probs=24.4

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .-.+++.++|..|.|||++++.|....+..
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~   57 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPG   57 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCC
Confidence            456899999999999999999998766543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=88.62  E-value=0.2  Score=32.87  Aligned_cols=29  Identities=10%  Similarity=0.219  Sum_probs=25.3

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|..|+||+++++.|......
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~   39 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFN   39 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCC
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCC
Confidence            56799999999999999999999876544

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=88.43  E-value=0.19  Score=32.53  Aligned_cols=28  Identities=21%  Similarity=0.358  Sum_probs=24.7

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ...+++.++|..|+||+++++.|.....
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~   54 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAF   54 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCC
Confidence            5679999999999999999999987654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=88.39  E-value=0.15  Score=32.15  Aligned_cols=30  Identities=3%  Similarity=0.101  Sum_probs=23.4

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .-.+++.++|..|+|||++++.|.......
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~   44 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSS   44 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC---
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCcc
Confidence            356789999999999999999998766544

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=88.14  E-value=0.25  Score=30.97  Aligned_cols=25  Identities=4%  Similarity=0.251  Sum_probs=21.9

Q ss_pred             eEeeeeecccCccccchhhhhhhhh
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      .+++.++|.+|.|||++++.|....
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~~   31 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGEN   31 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4789999999999999999998643

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=88.01  E-value=0.21  Score=32.76  Aligned_cols=30  Identities=7%  Similarity=-0.075  Sum_probs=24.5

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      -..+++.++|..|+|||++++.|.......
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~   54 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPE   54 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCC
Confidence            456899999999999999999998766543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=87.95  E-value=0.23  Score=31.96  Aligned_cols=28  Identities=11%  Similarity=0.002  Sum_probs=24.3

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      -.+++.++|..|+|||++++.|......
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~   35 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFP   35 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4689999999999999999999876543

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=87.88  E-value=0.18  Score=32.03  Aligned_cols=22  Identities=14%  Similarity=0.158  Sum_probs=20.2

Q ss_pred             EeeeeecccCccccchhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRC   55 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~   55 (79)
                      +.+.++|.+|+|||++.+.|..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5789999999999999999876

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=87.85  E-value=0.23  Score=32.51  Aligned_cols=29  Identities=10%  Similarity=0.094  Sum_probs=24.9

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|..|+|||++++.|......
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~   54 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP   54 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            56799999999999999999999876553

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=87.61  E-value=0.53  Score=30.59  Aligned_cols=28  Identities=4%  Similarity=-0.183  Sum_probs=23.8

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .-.+.+.++|..|+|||++.+.|.....
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4568899999999999999999987643

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=87.58  E-value=0.19  Score=32.40  Aligned_cols=29  Identities=10%  Similarity=0.139  Sum_probs=23.1

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .-.+++.++|.+|.|||++++.|......
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~   33 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYR   33 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcc
Confidence            34678999999999999999999876643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=87.48  E-value=0.19  Score=35.47  Aligned_cols=27  Identities=4%  Similarity=0.208  Sum_probs=23.6

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      -.++++++|.+++|||+++|.+.....
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~  145 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNI  145 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCce
Confidence            458899999999999999999986653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=87.41  E-value=0.23  Score=31.87  Aligned_cols=27  Identities=7%  Similarity=0.204  Sum_probs=23.0

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      -.+++.++|..|.|||++++.|.....
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~   54 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGEI   54 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCCc
Confidence            468899999999999999999975443

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=87.38  E-value=0.27  Score=31.73  Aligned_cols=25  Identities=8%  Similarity=0.094  Sum_probs=21.8

Q ss_pred             ceEeeeeecccCccccchhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCR   56 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~   56 (79)
                      ..+.+.++|.+|+|||++++.|...
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3588999999999999999998743

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=87.29  E-value=0.21  Score=32.33  Aligned_cols=28  Identities=0%  Similarity=0.125  Sum_probs=24.6

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .-.+++.++|..|.|||++++.|.....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~   37 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV   37 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            5678899999999999999999987664

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=87.13  E-value=0.32  Score=31.22  Aligned_cols=27  Identities=11%  Similarity=0.271  Sum_probs=23.3

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ..+.+.++|.+|.|||++++.|.....
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~   30 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEF   30 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCC
Confidence            468899999999999999999987543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=86.92  E-value=0.23  Score=31.30  Aligned_cols=27  Identities=4%  Similarity=0.126  Sum_probs=23.2

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      -.+++.++|..|.|||++++.|.....
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~   47 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDV   47 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCC
Confidence            468999999999999999999975443

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=86.67  E-value=0.32  Score=30.30  Aligned_cols=25  Identities=4%  Similarity=0.251  Sum_probs=21.4

Q ss_pred             eEeeeeecccCccccchhhhhhhhh
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      .+.+.++|.+|.|||++++.|....
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCC
Confidence            3678999999999999999997543

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=86.60  E-value=0.13  Score=33.07  Aligned_cols=29  Identities=14%  Similarity=0.146  Sum_probs=24.5

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .-.+++.++|..|.|||++++.|....+.
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~   56 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP   56 (204)
Confidence            56789999999999999999888765543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=86.57  E-value=0.21  Score=32.03  Aligned_cols=27  Identities=15%  Similarity=0.229  Sum_probs=22.8

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+++.++|.+|.|||++++.|......
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~~~~   49 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKNDRLA   49 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            457899999999999999999876544

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=86.57  E-value=0.34  Score=31.11  Aligned_cols=28  Identities=11%  Similarity=0.262  Sum_probs=23.9

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ...+.+.++|.+|.|||++++.|.....
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~   54 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEF   54 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCC
Confidence            4568999999999999999999886543

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=86.50  E-value=0.27  Score=33.22  Aligned_cols=27  Identities=15%  Similarity=0.260  Sum_probs=23.3

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .|.+.++|.+|+|||++++.|......
T Consensus        13 ~~KivlvGd~~VGKTsLi~r~~~~~f~   39 (216)
T 4dkx_A           13 KFKLVFLGEQSVGKTSLITRFMYDSFD   39 (216)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             cEEEEEECcCCcCHHHHHHHHHhCCCC
Confidence            478999999999999999999876543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=85.67  E-value=0.43  Score=29.71  Aligned_cols=24  Identities=4%  Similarity=-0.003  Sum_probs=20.1

Q ss_pred             CceEeeeeecccCccccchhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFR   54 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r   54 (79)
                      ...+++.++|..|.|||++++.+.
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~   35 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIY   35 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHHH
Confidence            467899999999999999995443

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=85.57  E-value=0.34  Score=30.73  Aligned_cols=26  Identities=8%  Similarity=0.244  Sum_probs=22.7

Q ss_pred             ceEeeeeecccCccccchhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      -.+.+.++|.+|+|||++++.|....
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~   40 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASED   40 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCC
Confidence            46889999999999999999987653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=84.19  E-value=0.41  Score=32.23  Aligned_cols=27  Identities=7%  Similarity=0.102  Sum_probs=23.2

Q ss_pred             CceEeeeeecccCccccchhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      .-.+++.++|.+|.|||++.|.|....
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCC
Confidence            346899999999999999999998665

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=84.06  E-value=0.43  Score=30.11  Aligned_cols=24  Identities=4%  Similarity=0.152  Sum_probs=21.0

Q ss_pred             EeeeeecccCccccchhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      +.+.++|.+|.|||++++.|....
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            568899999999999999998654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=84.06  E-value=0.18  Score=32.67  Aligned_cols=26  Identities=4%  Similarity=0.006  Sum_probs=23.0

Q ss_pred             ceEeeeeecccCccccchhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      -.+++.++|..|.|||++++.|....
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            35789999999999999999998765

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=83.82  E-value=0.5  Score=31.65  Aligned_cols=25  Identities=8%  Similarity=0.126  Sum_probs=22.2

Q ss_pred             CceEeeeeecccCccccchhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRC   55 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~   55 (79)
                      ...+.+.++|.+|+|||++++.|..
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            4568999999999999999999874

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=83.26  E-value=0.42  Score=30.58  Aligned_cols=25  Identities=8%  Similarity=0.070  Sum_probs=19.9

Q ss_pred             CceEeeeeecccCccccchhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRC   55 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~   55 (79)
                      .-.+++.++|..|+|||++++.+..
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            3578899999999999999885544

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=83.23  E-value=0.52  Score=32.53  Aligned_cols=26  Identities=8%  Similarity=0.109  Sum_probs=22.8

Q ss_pred             eEeeeeecccCccccchhhhhhhhhh
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .+++.++|..|.|||++++.|.....
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~~   30 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTKQ   30 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTCE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCC
Confidence            57899999999999999999986553

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=83.05  E-value=0.45  Score=30.45  Aligned_cols=27  Identities=4%  Similarity=0.049  Sum_probs=21.8

Q ss_pred             CceEeeeeecccCccccchhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      .--+.+.++|.+|.||||+++.+....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            334678999999999999999887544

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=82.61  E-value=0.52  Score=32.22  Aligned_cols=29  Identities=10%  Similarity=0.011  Sum_probs=25.0

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ...+++.++|..|+|||++++.|....+.
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~  181 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFP  181 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCC
Confidence            55689999999999999999999876653

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=82.29  E-value=0.52  Score=30.40  Aligned_cols=26  Identities=12%  Similarity=0.167  Sum_probs=21.6

Q ss_pred             eEeeeeecccCccccchhhhhhhhhh
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .+.+.++|.+|.|||++++.|....+
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~~~   50 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDDRL   50 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            46799999999999999999986554

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=82.23  E-value=0.85  Score=29.49  Aligned_cols=27  Identities=7%  Similarity=-0.076  Sum_probs=22.5

Q ss_pred             CceEeeeeecccCccccchhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      .-...+.++|..|.||||+.+.|....
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            345679999999999999999987653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=81.79  E-value=0.59  Score=32.00  Aligned_cols=26  Identities=12%  Similarity=0.086  Sum_probs=22.4

Q ss_pred             eEeeeeecccCccccchhhhhhhhhh
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .+++.++|..|.|||+++|.|.....
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCc
Confidence            47899999999999999999976543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=81.32  E-value=0.57  Score=34.19  Aligned_cols=23  Identities=13%  Similarity=0.057  Sum_probs=21.3

Q ss_pred             EeeeeecccCccccchhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCR   56 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~   56 (79)
                      .+++++|.+++|||+++|+++..
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhh
Confidence            47999999999999999999977

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	79
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.15
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.33
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.0
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.78
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.66
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.56
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.54
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.52
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.52
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.39
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	93.24
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.19
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.12
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.11
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.05
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.03
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	92.98
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.91
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	92.83
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.82
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	92.74
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.67
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.65
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	92.63
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	92.63
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.34
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.23
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	92.12
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	91.93
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	91.92
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	91.92
d1nrjb_	209	Signal recognition particle receptor beta-subunit	91.78
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	91.72
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	91.68
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	91.61
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.59
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	91.58
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	91.57
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	91.57
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	91.53
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	91.39
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	91.33
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	91.25
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	91.22
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	91.18
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	91.05
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	90.86
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	90.79
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	90.52
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	90.31
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	90.18
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	89.83
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	89.8
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	89.8
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	89.58
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	89.53
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	89.32
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	89.14
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	88.85
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.66
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.58
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	88.46
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	87.96
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	87.85
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	87.82
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	87.7
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	87.55
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	87.15
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	86.85
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	86.61
d2fh5b1	207	Signal recognition particle receptor beta-subunit	86.41
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	85.16
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	85.05
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	84.21
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	83.53
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	83.49
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	82.39
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	82.18
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	80.26

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.15  E-value=0.0043  Score=41.66  Aligned_cols=49  Identities=12%  Similarity=0.209  Sum_probs=37.3

Q ss_pred             ceeeeeCCChHHHHH------Hhh--CceEeeeeecccCccccchhhhhhhhhhcCC
Q psy5599          13 YIGFANLPNQVFRKA------VKK--GFEFTLMVVDLKDVTSNVHYENFRCRKLAGL   61 (79)
Q Consensus        13 ~~G~~~lpnq~~~~~------~K~--g~~fn~mvvglsglgkst~~e~~r~~~L~~~   61 (79)
                      ++|..++|+..+...      ++.  --.++++++|.+|.|||+++|+++.+.....
T Consensus         4 ~~~~~~~~~~~~~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~v   60 (257)
T d1h65a_           4 WSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSI   60 (257)
T ss_dssp             CGGGGGSCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCC
T ss_pred             hhhHhhhhHHHHHHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCCCceee
Confidence            568888887555532      122  3679999999999999999999998776543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.33  E-value=0.0091  Score=37.06  Aligned_cols=29  Identities=7%  Similarity=0.197  Sum_probs=24.9

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .+|.++++|.+|+|||+|++.|.......
T Consensus         1 ~~~Kv~vvG~~~vGKSSLi~~l~~~~f~~   29 (184)
T d1vg8a_           1 VLLKVIILGDSGVGKTSLMNQYVNKKFSN   29 (184)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCC
Confidence            36889999999999999999998866443

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.00  E-value=0.012  Score=34.72  Aligned_cols=28  Identities=7%  Similarity=0.236  Sum_probs=24.2

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .+++.++|.+|+|||++++.|.......
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~   32 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVT   32 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcc
Confidence            4789999999999999999998776544

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=93.78  E-value=0.016  Score=34.06  Aligned_cols=27  Identities=7%  Similarity=0.176  Sum_probs=23.2

Q ss_pred             eeeeecccCccccchhhhhhhhhhcCC
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKLAGL   61 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L~~~   61 (79)
                      .+.++|.+++|||++++.|........
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~~~~~   28 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGEIVTT   28 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcc
Confidence            578999999999999999988776543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.66  E-value=0.013  Score=35.61  Aligned_cols=28  Identities=11%  Similarity=0.128  Sum_probs=24.1

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      +|.+.++|.+++|||++++.|.......
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~   29 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNP   29 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCC
Confidence            5789999999999999999998766443

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.014  Score=35.58  Aligned_cols=28  Identities=18%  Similarity=0.204  Sum_probs=24.0

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .|.+.++|.+++|||++++.|.......
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~   30 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVD   30 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence            4789999999999999999998765443

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.021  Score=34.75  Aligned_cols=27  Identities=11%  Similarity=0.121  Sum_probs=23.4

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .|.++++|.+|+|||++++.|......
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~   28 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFR   28 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            478999999999999999999876543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.015  Score=35.50  Aligned_cols=29  Identities=10%  Similarity=0.163  Sum_probs=25.1

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      +.|.+.++|..|+|||++++.|.......
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~   30 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFND   30 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCS
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCc
Confidence            47899999999999999999998766544

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=93.52  E-value=0.012  Score=35.55  Aligned_cols=29  Identities=14%  Similarity=0.253  Sum_probs=25.0

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .-.|+++++|..|.|||++++.+...+..
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~   41 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVV   41 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            55689999999999999999999876544

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.014  Score=36.17  Aligned_cols=26  Identities=12%  Similarity=0.181  Sum_probs=22.8

Q ss_pred             ceEeeeeecccCccccchhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      ..|.++++|..|+|||++++.|....
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~   29 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNK   29 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCC
Confidence            56889999999999999999987644

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.024  Score=34.63  Aligned_cols=29  Identities=17%  Similarity=0.320  Sum_probs=24.8

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ..|.+.++|..|+|||++.+.|.......
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~   32 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKD   32 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCT
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCc
Confidence            56889999999999999999998766543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.19  E-value=0.027  Score=34.41  Aligned_cols=27  Identities=7%  Similarity=0.261  Sum_probs=23.5

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ..|.++++|.+|+|||++++.|.....
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~   30 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSF   30 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCC
Confidence            468899999999999999999987653

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.029  Score=34.02  Aligned_cols=29  Identities=14%  Similarity=0.171  Sum_probs=24.5

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcCC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAGL   61 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~~   61 (79)
                      .|.+.++|.+|+|||++++.|.......-
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~   31 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEK   31 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSC
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCc
Confidence            47899999999999999999987765443

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=93.11  E-value=0.017  Score=34.85  Aligned_cols=28  Identities=14%  Similarity=0.340  Sum_probs=23.9

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .|++.++|..|.|||++++.|.......
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~   29 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDT   29 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSS
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCc
Confidence            4789999999999999999998766544

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.019  Score=35.03  Aligned_cols=29  Identities=14%  Similarity=0.165  Sum_probs=24.9

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ..|.++++|.+|+|||++++.|.......
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~   33 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHE   33 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCT
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCc
Confidence            57899999999999999999998766443

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.03  E-value=0.032  Score=33.59  Aligned_cols=29  Identities=14%  Similarity=0.214  Sum_probs=24.8

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcCC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAGL   61 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~~   61 (79)
                      .|.++++|.+|+|||++.+.|.......-
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~   30 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDR   30 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCc
Confidence            57899999999999999999988765543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.98  E-value=0.021  Score=34.78  Aligned_cols=27  Identities=7%  Similarity=0.134  Sum_probs=23.3

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .|.+.++|.+++|||++++.|......
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~   28 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYS   28 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCC
Confidence            478999999999999999999876543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.019  Score=35.11  Aligned_cols=26  Identities=19%  Similarity=0.151  Sum_probs=23.0

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      |.++++|.+|+|||++++.|......
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~   31 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQSYFV   31 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            78999999999999999999876644

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.022  Score=34.91  Aligned_cols=28  Identities=11%  Similarity=0.293  Sum_probs=23.9

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ..|.+.++|.+|+|||++++.|......
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~   29 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ   29 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCC
Confidence            3688999999999999999998876543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.82  E-value=0.03  Score=35.08  Aligned_cols=30  Identities=13%  Similarity=0.244  Sum_probs=25.6

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .+.|.+.++|..++|||++++.|.......
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~   33 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN   33 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCT
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCC
Confidence            467899999999999999999998765444

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.023  Score=35.41  Aligned_cols=29  Identities=10%  Similarity=0.084  Sum_probs=25.1

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ..|.++++|.+|+|||++++.|.......
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~   36 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSYANDAFPE   36 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhhCCCCC
Confidence            67899999999999999999998766443

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.025  Score=34.40  Aligned_cols=27  Identities=15%  Similarity=0.266  Sum_probs=23.5

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .|.+.++|.+|+|||++++.|......
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~   30 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFM   30 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            588999999999999999999876543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.025  Score=34.98  Aligned_cols=28  Identities=14%  Similarity=0.182  Sum_probs=23.9

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .+.++++|.+|+|||++++.|.......
T Consensus         5 ~iKivviG~~~vGKTsli~~~~~~~f~~   32 (183)
T d1mh1a_           5 AIKCVVVGDGAVGKTCLLISYTTNAFPG   32 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCc
Confidence            4789999999999999999998766433

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.63  E-value=0.023  Score=34.90  Aligned_cols=28  Identities=14%  Similarity=0.239  Sum_probs=12.3

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ...|.+.++|..++|||++++.|.....
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~   31 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAF   31 (173)
T ss_dssp             SEEEEEEEECCCCC--------------
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCC
Confidence            4568899999999999999999886553

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.025  Score=34.64  Aligned_cols=28  Identities=11%  Similarity=0.165  Sum_probs=24.0

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      -.|.+.++|.+++|||+|++.|......
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~   32 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFD   32 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            4688999999999999999999876543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.34  E-value=0.027  Score=34.38  Aligned_cols=29  Identities=14%  Similarity=0.232  Sum_probs=24.6

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ..|.+.++|.+|+|||++++.|.......
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~   32 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP   32 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCT
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCC
Confidence            46889999999999999999998765443

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.23  E-value=0.044  Score=33.53  Aligned_cols=28  Identities=18%  Similarity=0.153  Sum_probs=24.2

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .|.+.++|.+|+|||++.+.|.......
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~   31 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVP   31 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCT
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCc
Confidence            4789999999999999999998876544

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.12  E-value=0.032  Score=32.41  Aligned_cols=27  Identities=19%  Similarity=0.324  Sum_probs=22.9

Q ss_pred             eeeeecccCccccchhhhhhhhhhcCC
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKLAGL   61 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L~~~   61 (79)
                      .+.++|.+++|||++.+.|........
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~   28 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATL   28 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCee
Confidence            478999999999999999998776543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.93  E-value=0.025  Score=34.26  Aligned_cols=24  Identities=13%  Similarity=0.246  Sum_probs=21.3

Q ss_pred             eeeecccCccccchhhhhhhhhhc
Q psy5599          36 LMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      +.++|.+++|||+++|.+..+...
T Consensus         8 I~iiG~~nvGKSSLin~L~~~~~~   31 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLGQKIS   31 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHTCSEE
T ss_pred             EEEECCCCCCHHHHHHHHhCCCce
Confidence            789999999999999999976654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.92  E-value=0.037  Score=33.34  Aligned_cols=27  Identities=15%  Similarity=0.250  Sum_probs=23.2

Q ss_pred             EeeeeecccCccccchhhhhhhhhhcC
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      |.+.++|..|+|||++++.|.......
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~   27 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDN   27 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCS
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCC
Confidence            578999999999999999998766544

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=91.92  E-value=0.032  Score=33.29  Aligned_cols=26  Identities=8%  Similarity=0.156  Sum_probs=22.3

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      |.+.++|.++.|||+++|.|..+...
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~   27 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAA   27 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCce
Confidence            67899999999999999999866543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.78  E-value=0.04  Score=34.03  Aligned_cols=27  Identities=0%  Similarity=0.014  Sum_probs=23.5

Q ss_pred             EeeeeecccCccccchhhhhhhhhhcC
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      -++.++|.++.|||+++|.|..+...+
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~~   30 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVRP   30 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            478999999999999999999876554

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=91.72  E-value=0.034  Score=34.03  Aligned_cols=25  Identities=8%  Similarity=0.189  Sum_probs=22.5

Q ss_pred             EeeeeecccCccccchhhhhhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      |++.++|..+.|||+++|.+.....
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~~~   33 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNKER   33 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCc
Confidence            7899999999999999999987654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.68  E-value=0.028  Score=33.54  Aligned_cols=27  Identities=11%  Similarity=0.119  Sum_probs=23.1

Q ss_pred             EeeeeecccCccccchhhhhhhhhhcC
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      +.+.++|.++.|||+++|.+..+....
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~   27 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAI   27 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcee
Confidence            468899999999999999998876543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.61  E-value=0.047  Score=33.41  Aligned_cols=28  Identities=11%  Similarity=0.258  Sum_probs=23.7

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      -+|.+.++|..|+|||++++.|......
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~   30 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFN   30 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            3688999999999999999999875543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.59  E-value=0.039  Score=33.73  Aligned_cols=28  Identities=11%  Similarity=0.097  Sum_probs=23.8

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .|.+.++|.+++|||++++.|.......
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~   31 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVE   31 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCc
Confidence            5789999999999999999998766433

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.58  E-value=0.039  Score=33.85  Aligned_cols=28  Identities=18%  Similarity=0.086  Sum_probs=23.9

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .|.++++|..|+|||++++.|.......
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~~~f~~   33 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQSYFVS   33 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCCS
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCc
Confidence            4789999999999999999998766443

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.039  Score=33.49  Aligned_cols=28  Identities=18%  Similarity=0.190  Sum_probs=23.9

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .|.+.++|.+|+|||++++.|.......
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~   30 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVE   30 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence            4778999999999999999998776543

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.039  Score=33.87  Aligned_cols=28  Identities=7%  Similarity=0.153  Sum_probs=23.4

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .|.+.++|..|+|||++++.|.......
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~   34 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDP   34 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCT
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCC
Confidence            4679999999999999999998765433

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.53  E-value=0.032  Score=34.25  Aligned_cols=28  Identities=11%  Similarity=0.169  Sum_probs=21.1

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ..|.+.++|.+|+|||++++.|......
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~   29 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFE   29 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            4688999999999999999998766543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.39  E-value=0.04  Score=33.41  Aligned_cols=24  Identities=13%  Similarity=0.196  Sum_probs=21.1

Q ss_pred             eeeeecccCccccchhhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ++.++|.++.|||+++|.+..++.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~   25 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKV   25 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            578999999999999999987654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.04  Score=33.65  Aligned_cols=28  Identities=14%  Similarity=0.164  Sum_probs=24.0

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ++.+.++|.+|+|||++++.|.......
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~   29 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIW   29 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence            5778999999999999999999866443

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.25  E-value=0.04  Score=33.35  Aligned_cols=27  Identities=11%  Similarity=0.124  Sum_probs=22.8

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      -+.+.++|.+|+|||++++.|......
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~   28 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFT   28 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCC
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            367899999999999999999875543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.22  E-value=0.067  Score=32.29  Aligned_cols=30  Identities=17%  Similarity=0.281  Sum_probs=24.6

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcCCC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAGLG   62 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~~~   62 (79)
                      .+.+.++|..|+|||++.+.|........+
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~   31 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTG   31 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence            467899999999999999999876655443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.18  E-value=0.035  Score=37.46  Aligned_cols=22  Identities=9%  Similarity=0.016  Sum_probs=19.4

Q ss_pred             eeeeecccCccccchhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCR   56 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~   56 (79)
                      ++.++|.||+|||+++|.+..+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTT
T ss_pred             eEEEECCCCCCHHHHHHhhcch
Confidence            5789999999999999999754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.05  E-value=0.048  Score=33.06  Aligned_cols=28  Identities=11%  Similarity=0.054  Sum_probs=23.8

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .|.+.++|.+|+|||++.+.|.......
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~   31 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDP   31 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCT
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCc
Confidence            4678999999999999999998766543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.044  Score=33.42  Aligned_cols=26  Identities=8%  Similarity=0.110  Sum_probs=20.9

Q ss_pred             EeeeeecccCccccchhhhhhhhhhc
Q psy5599          34 FTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      |.+.++|.+|+|||++++.|......
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~   27 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDG   27 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccC
Confidence            77899999999999999998765543

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.79  E-value=0.051  Score=33.02  Aligned_cols=28  Identities=18%  Similarity=0.256  Sum_probs=24.3

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .+.|.+.++|..++|||++++.|.....
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~   31 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAF   31 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCC
Confidence            3578899999999999999999987654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=90.52  E-value=0.058  Score=32.58  Aligned_cols=27  Identities=15%  Similarity=0.190  Sum_probs=23.1

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+++.++|.+++|||++.+.|......
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~   28 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFN   28 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            478899999999999999999876644

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.31  E-value=0.059  Score=32.53  Aligned_cols=28  Identities=7%  Similarity=0.105  Sum_probs=23.2

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .+.+.++|.+|+|||++++.|.......
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~~f~~   31 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEGQFVD   31 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCc
Confidence            3578999999999999999998765443

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.18  E-value=0.052  Score=32.30  Aligned_cols=28  Identities=11%  Similarity=0.122  Sum_probs=22.1

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      -..++.++|.+|+|||++++.|......
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~   39 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLG   39 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence            3567899999999999999999876543

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.83  E-value=0.06  Score=32.93  Aligned_cols=25  Identities=20%  Similarity=0.193  Sum_probs=21.8

Q ss_pred             eeeeecccCccccchhhhhhhhhhc
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+.++|.++.|||+++|.|......
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~~   31 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKVA   31 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce
Confidence            4899999999999999999876543

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=89.80  E-value=0.059  Score=32.56  Aligned_cols=28  Identities=7%  Similarity=0.273  Sum_probs=23.9

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      -.+.+.++|..++|||++++.|......
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~~~~~~   42 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLASEDIS   42 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4678999999999999999999766543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.80  E-value=0.092  Score=32.62  Aligned_cols=29  Identities=17%  Similarity=0.076  Sum_probs=25.0

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcCC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAGL   61 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~~   61 (79)
                      .+++.++|..|+|||++++.|........
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~   33 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQVL   33 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCCC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCc
Confidence            58899999999999999999988776443

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=89.58  E-value=0.058  Score=32.84  Aligned_cols=26  Identities=8%  Similarity=0.184  Sum_probs=22.2

Q ss_pred             ceEeeeeecccCccccchhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      -.+.++++|.+++|||++++.|....
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCC
Confidence            46889999999999999999886543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.11  Score=31.60  Aligned_cols=29  Identities=7%  Similarity=-0.054  Sum_probs=23.9

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcCC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAGL   61 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~~   61 (79)
                      ...++++|.+|+|||++++.|.......-
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~   30 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEV   30 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSS
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCC
Confidence            34688999999999999999988765543

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.32  E-value=0.12  Score=31.07  Aligned_cols=29  Identities=14%  Similarity=0.118  Sum_probs=24.4

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcCC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAGL   61 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~~   61 (79)
                      .+.+.++|..|+|||++++.|.......-
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~   31 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAEN   31 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTT
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcc
Confidence            36789999999999999999998775543

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=89.14  E-value=0.063  Score=31.72  Aligned_cols=21  Identities=5%  Similarity=-0.026  Sum_probs=18.5

Q ss_pred             eeeecccCccccchhhhhhhh
Q psy5599          36 LMVVDLKDVTSNVHYENFRCR   56 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~~   56 (79)
                      +-++|.+|.||||+.+.+-..
T Consensus         5 i~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            678999999999999998754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.85  E-value=0.087  Score=32.19  Aligned_cols=26  Identities=8%  Similarity=0.098  Sum_probs=22.1

Q ss_pred             ceEeeeeecccCccccchhhhhhhhh
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      .-|.+.++|.+|+|||++.+.|....
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCc
Confidence            35789999999999999999887543

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.66  E-value=0.097  Score=31.65  Aligned_cols=27  Identities=11%  Similarity=0.207  Sum_probs=23.2

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhc
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .+.+.++|..|+|||++...|......
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~   28 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS   28 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            478999999999999999999766654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.58  E-value=0.085  Score=32.20  Aligned_cols=23  Identities=4%  Similarity=0.190  Sum_probs=20.4

Q ss_pred             eEeeeeecccCccccchhhhhhh
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRC   55 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~   55 (79)
                      ++.+.++|.+|+|||++.+.|+-
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f   24 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRI   24 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            47789999999999999999953

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=88.46  E-value=0.077  Score=32.42  Aligned_cols=29  Identities=7%  Similarity=0.200  Sum_probs=24.1

Q ss_pred             CceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      .-.+.+.++|.+|+|||++++.|......
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~   43 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVV   43 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            45789999999999999999988655443

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.96  E-value=0.11  Score=32.19  Aligned_cols=28  Identities=14%  Similarity=0.150  Sum_probs=23.6

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .+.+.++|.+|+|||++.+.|.......
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~   30 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPS   30 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCC
Confidence            3678999999999999999998776543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.85  E-value=0.044  Score=37.11  Aligned_cols=23  Identities=9%  Similarity=-0.016  Sum_probs=18.5

Q ss_pred             eeeeecccCccccchhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~   57 (79)
                      .+.++|.||+|||+++|.+....
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            35688999999999999998643

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.82  E-value=0.12  Score=31.94  Aligned_cols=28  Identities=11%  Similarity=0.082  Sum_probs=23.3

Q ss_pred             eEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      .+.+.++|.+|+|||++++.|.......
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~   29 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPE   29 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCC
Confidence            3567899999999999999998876543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=87.70  E-value=0.09  Score=32.46  Aligned_cols=23  Identities=13%  Similarity=0.192  Sum_probs=20.1

Q ss_pred             eeeeecccCccccchhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~   57 (79)
                      .+.++|.+|.||||++|.+..+.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            68999999999999999998643

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.55  E-value=0.14  Score=36.19  Aligned_cols=27  Identities=7%  Similarity=0.001  Sum_probs=23.7

Q ss_pred             CceEeeeeecccCccccchhhhhhhhh
Q psy5599          31 GFEFTLMVVDLKDVTSNVHYENFRCRK   57 (79)
Q Consensus        31 g~~fn~mvvglsglgkst~~e~~r~~~   57 (79)
                      ...+++.++|.+|.|||+++|.++...
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            356899999999999999999999644

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.15  E-value=0.099  Score=31.94  Aligned_cols=21  Identities=10%  Similarity=0.085  Sum_probs=17.8

Q ss_pred             EeeeeecccCccccchhhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENFR   54 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~r   54 (79)
                      +-++|+|++|.||||+-+.+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~   23 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLT   23 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            347899999999999877665

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=86.85  E-value=0.11  Score=31.34  Aligned_cols=24  Identities=17%  Similarity=0.311  Sum_probs=19.0

Q ss_pred             eeeeecccCccccchhhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ++.++|..+.|||++++.|.....
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~   25 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKK   25 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            478999999999999999975543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.61  E-value=0.13  Score=32.14  Aligned_cols=20  Identities=5%  Similarity=0.135  Sum_probs=17.4

Q ss_pred             eeeecccCccccchhhhhhh
Q psy5599          36 LMVVDLKDVTSNVHYENFRC   55 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~   55 (79)
                      ++++|.+|.||||+...+..
T Consensus        17 iil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          17 VVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHTG
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999877754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.41  E-value=0.13  Score=32.04  Aligned_cols=25  Identities=12%  Similarity=0.212  Sum_probs=21.7

Q ss_pred             eeeeecccCccccchhhhhhhhhhc
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ++.++|..+.|||++++.|......
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~   26 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYR   26 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCC
Confidence            5789999999999999999876543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=85.16  E-value=0.11  Score=30.82  Aligned_cols=26  Identities=4%  Similarity=0.051  Sum_probs=21.5

Q ss_pred             eEeeeeecccCccccchhhhhhhhhh
Q psy5599          33 EFTLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        33 ~fn~mvvglsglgkst~~e~~r~~~L   58 (79)
                      .+++-++|.++.|||+++|.+...+.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~~~   41 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQKS   41 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            57789999999999999999976553

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.05  E-value=0.22  Score=31.80  Aligned_cols=28  Identities=7%  Similarity=0.135  Sum_probs=23.5

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhc
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLA   59 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~   59 (79)
                      ..+.++++|..|+|||++...|+.....
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~~   32 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHVV   32 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCcC
Confidence            3577899999999999999999866543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=84.21  E-value=0.17  Score=33.69  Aligned_cols=29  Identities=7%  Similarity=0.209  Sum_probs=24.7

Q ss_pred             ceEeeeeecccCccccchhhhhhhhhhcC
Q psy5599          32 FEFTLMVVDLKDVTSNVHYENFRCRKLAG   60 (79)
Q Consensus        32 ~~fn~mvvglsglgkst~~e~~r~~~L~~   60 (79)
                      ..++++++|...+|||+++|.++.++...
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~  139 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNIAK  139 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred             CceEEEEEecCccchhhhhhhhhccceEE
Confidence            56889999999999999999999766433

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=83.53  E-value=0.2  Score=29.28  Aligned_cols=20  Identities=10%  Similarity=0.245  Sum_probs=15.7

Q ss_pred             EeeeeecccCccccchhhhh
Q psy5599          34 FTLMVVDLKDVTSNVHYENF   53 (79)
Q Consensus        34 fn~mvvglsglgkst~~e~~   53 (79)
                      +.+.+.|.+|.||||.=..+
T Consensus         7 ~~I~l~G~~GsGKTTia~~L   26 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARAL   26 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            45688999999999875444

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=83.49  E-value=0.18  Score=29.45  Aligned_cols=21  Identities=10%  Similarity=0.142  Sum_probs=18.3

Q ss_pred             eeeeecccCccccchhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRC   55 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~   55 (79)
                      +|.+.|.+|+||||+.+.+-.
T Consensus         9 ~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999887654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=82.39  E-value=0.16  Score=30.78  Aligned_cols=24  Identities=4%  Similarity=-0.013  Sum_probs=20.2

Q ss_pred             eeeeecccCccccchhhhhhhhhh
Q psy5599          35 TLMVVDLKDVTSNVHYENFRCRKL   58 (79)
Q Consensus        35 n~mvvglsglgkst~~e~~r~~~L   58 (79)
                      ++-++|.+++|||+++|.|..+..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~   26 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHP   26 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            367899999999999999986543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=82.18  E-value=0.27  Score=28.50  Aligned_cols=21  Identities=5%  Similarity=0.189  Sum_probs=17.2

Q ss_pred             eeeecccCccccchhhhhhhh
Q psy5599          36 LMVVDLKDVTSNVHYENFRCR   56 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~~   56 (79)
                      +.++|.+|.||||+-+.+..+
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            568999999999998776543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.26  E-value=0.29  Score=29.39  Aligned_cols=21  Identities=19%  Similarity=0.178  Sum_probs=17.9

Q ss_pred             eeeecccCccccchhhhhhhh
Q psy5599          36 LMVVDLKDVTSNVHYENFRCR   56 (79)
Q Consensus        36 ~mvvglsglgkst~~e~~r~~   56 (79)
                      +-++|.+|.||||+.+.+-..
T Consensus         4 i~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            458999999999999988654