Psyllid ID: psy5713

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLLQLTSDLIFHDFY
Secondary Structure (PSIPRED)
cccccccEEEEEEccccHHHHcccccccEEEEEccEEcccccHHHHHHHHHccccEEEEEEEEcccccccccccccEEccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEccccccHHHHcccccccEEEEEccEEcccccHHHHHHHHHccccEEEEEEEcccccccEEEHHHHHHccc
Coil and Loop (DISEMBL)
mdepmdtifikhvrphspaaaaglvpgdrvvavnnqtiadlpYAEVVQLIQNSPAYLhllvvpkendllqltsdlifhdfy
Flexible Loop (DISEMBL)
MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLLQLTSDLIFHDFY
Low Complexity Region (SEG)
MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLLQLTSDLIFHDFY
Disordered region (IsUnstruct)
*******IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLLQLTSDLIFHD**
Disordered Region (DISOPRED)
***PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLLQLTSD**FHDFY
Disordered Region (DISEMBL)
MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLLQLTSDLIFHDFY
Disordered Region (DISPRO)
***PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLLQLTSDLIFHDFY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLLQLTSDLIFHDFY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
Q71M21	1902	Rho GTPase-activating pro	N/A	N/A	0.851	0.036	0.507	8e-14
A2RUV4	1935	Rho GTPase-activating pro	yes	N/A	0.851	0.035	0.507	8e-14
Q6DFG0	1926	Rho GTPase-activating pro	N/A	N/A	0.851	0.035	0.507	1e-13
Q5T5U3	1957	Rho GTPase-activating pro	yes	N/A	0.851	0.035	0.492	1e-13
Q6DFV3	1944	Rho GTPase-activating pro	yes	N/A	0.851	0.035	0.492	2e-13
Q9P227	1491	Rho GTPase-activating pro	no	N/A	0.851	0.046	0.507	4e-13
Q69ZH9	1483	Rho GTPase-activating pro	no	N/A	0.851	0.046	0.521	6e-13
Q9JHL1	337	Na(+)/H(+) exchange regul	no	N/A	0.728	0.175	0.457	8e-06
Q9JJ40	523	Na(+)/H(+) exchange regul	no	N/A	0.716	0.110	0.465	1e-05
Q3T0X8	520	Na(+)/H(+) exchange regul	no	N/A	0.716	0.111	0.448	1e-05

>sp|Q71M21|RH21B_XENLA Rho GTPase-activating protein 21-B OS=Xenopus laevis GN=arhgap21-b PE=2 SV=1

 Score = 75.9 bits (185), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/69 (50%), Positives = 49/69 (71%)

Query: 3   EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
           EPMDTIF+K V+   PA  AGL  GDR++ VN +++    Y++V+ LIQNS + L L V+
Sbjct: 100 EPMDTIFVKQVKEGGPAHEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDSTLELSVM 159

Query: 63  PKENDLLQL 71
           PK+ D+LQL
Sbjct: 160 PKDEDILQL 168

GTPase-activating protein (GAP) for rhoa and cdc42.
Xenopus laevis (taxid: 8355)

>sp|A2RUV4|RHG21_XENTR Rho GTPase-activating protein 21 OS=Xenopus tropicalis GN=arhgap21 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/69 (50%), Positives = 49/69 (71%)

Query: 3   EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
           EPMDTIF+K V+   PA  AGL  GDR++ VN +++    Y++V+ LIQNS + L L V+
Sbjct: 101 EPMDTIFVKQVKEGGPAHEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDSTLELSVM 160

Query: 63  PKENDLLQL 71
           PK+ D+LQL
Sbjct: 161 PKDEDILQL 169

GTPase-activating protein (GAP) for rhoa and cdc42.

Xenopus tropicalis (taxid: 8364)

>sp|Q6DFG0|RH21A_XENLA Rho GTPase-activating protein 21-A OS=Xenopus laevis GN=arhgap21-a PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/69 (50%), Positives = 49/69 (71%)

Query: 3   EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
           EPMDTIF+K V+   PA  AGL  GDR++ VN +++    Y++V+ LIQNS + L L V+
Sbjct: 100 EPMDTIFVKQVKEGGPAHEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDSTLELSVM 159

Query: 63  PKENDLLQL 71
           PK+ D+LQL
Sbjct: 160 PKDEDILQL 168

GTPase-activating protein (GAP) for rhoa and cdc42.

Xenopus laevis (taxid: 8355)

>sp|Q5T5U3|RHG21_HUMAN Rho GTPase-activating protein 21 OS=Homo sapiens GN=ARHGAP21 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 48/69 (69%)

Query: 3   EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
           EPMDTIF+K V+   PA  AGL  GDR++ VN +++    Y++V+ LIQNS   L L V+
Sbjct: 96  EPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVM 155

Query: 63  PKENDLLQL 71
           PK+ D+LQ+
Sbjct: 156 PKDEDILQV 164

Functions as a GTPase-activating protein (GAP) for RHOA and CDC42. Downstream partner of ARF1 which may control Golgi apparatus structure and function. Also required for CTNNA1 recruitment to adherens junctions.

Homo sapiens (taxid: 9606)

>sp|Q6DFV3|RHG21_MOUSE Rho GTPase-activating protein 21 OS=Mus musculus GN=Arhgap21 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 48/69 (69%)

Query: 3   EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
           EPMDTIF+K V+   PA  AGL  GDR++ VN +++    Y++V+ LIQNS   L L V+
Sbjct: 102 EPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVM 161

Query: 63  PKENDLLQL 71
           PK+ D+LQ+
Sbjct: 162 PKDEDILQV 170

Functions as a GTPase-activating protein (GAP) for RHOA and CDC42. Downstream partner of ARF1 which may control Golgi apparatus structure and function. Also required for CTNNA1 recruitment to adherens junctions.

Mus musculus (taxid: 10090)

>sp|Q9P227|RHG23_HUMAN Rho GTPase-activating protein 23 OS=Homo sapiens GN=ARHGAP23 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/69 (50%), Positives = 49/69 (71%)

Query: 3   EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
           EPMDTIF+K+V+   PA  AGL  GDR+V VN +++    Y++V+ LIQNS   L L ++
Sbjct: 93  EPMDTIFVKNVKEDGPAHRAGLRTGDRLVKVNGESVIGKTYSQVIALIQNSDDTLELSIM 152

Query: 63  PKENDLLQL 71
           PK+ D+LQL
Sbjct: 153 PKDEDILQL 161

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.

Homo sapiens (taxid: 9606)

>sp|Q69ZH9|RHG23_MOUSE Rho GTPase-activating protein 23 OS=Mus musculus GN=Arhgap23 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 49/69 (71%)

Query: 3   EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
           EPMDTIF+K+V+   PA  AGL  GDR+V VN ++I    Y++V+ LIQNS   L L ++
Sbjct: 93  EPMDTIFVKNVKDGGPAHRAGLRTGDRLVKVNGESIIGKTYSQVIGLIQNSDDTLELSIM 152

Query: 63  PKENDLLQL 71
           PK+ D+LQL
Sbjct: 153 PKDEDILQL 161

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.

Mus musculus (taxid: 10090)

>sp|Q9JHL1|NHRF2_MOUSE Na(+)/H(+) exchange regulatory cofactor NHE-RF2 OS=Mus musculus GN=Slc9a3r2 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 33/59 (55%)

Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
          FI+ V P SPA AA L  GDR+V VN   +    + +VVQ I+       LLVV KE D
Sbjct: 35 FIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGETHHQVVQRIKAVEGQTQLLVVDKETD 93

Scaffold protein that connects plasma membrane proteins with members of the ezrin/moesin/radixin family and thereby helps to link them to the actin cytoskeleton and to regulate their surface expression. Necessary for cAMP-mediated phosphorylation and inhibition of SLC9A3. May also act as scaffold protein in the nucleus.

Mus musculus (taxid: 10090)

>sp|Q9JJ40|NHRF3_RAT Na(+)/H(+) exchange regulatory cofactor NHE-RF3 OS=Rattus norvegicus GN=Pdzk1 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 36/58 (62%)

Query: 10  IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
           IK + P SPA AAGL   D VVAVN +++  L +  VV++I+N      LLV+ KE D
Sbjct: 268 IKDIEPGSPAEAAGLKNNDLVVAVNGESVEALDHDGVVEMIRNGGDQTTLLVLDKEAD 325

A scaffold protein that connects plasma membrane proteins and regulatory components, regulating their surface expression in epithelial cells apical domains. May be involved in the coordination of a diverse range of regulatory processes for ion transport and second messenger cascades. In complex with SLC9A3R1, may cluster proteins that are functionally dependent in a mutual fashion and modulate the trafficking and the activity of the associated membrane proteins. May play a role in the cellular mechanisms associated with multidrug resistance through its interaction with ABCC2 and PDZK1IP1. May potentiate the CFTR chloride channel activity (By similarity). May function to connect SCARB1 with the cellular machineries for intracellular cholesterol transport and/or metabolism. May be involved in the regulation of proximal tubular Na(+)-dependent inorganic phosphate cotransport therefore playing an important role in tubule function (By similarity). Component of a complex, composed of PDZK1, SYNGAP1, KLHL17 and NMDA receptors. Interacts (via PDZ1 domain) directly with KLHL17; the interaction is important for integrity of actin cytoskeleton structures in neurons.

Rattus norvegicus (taxid: 10116)

>sp|Q3T0X8|NHRF3_BOVIN Na(+)/H(+) exchange regulatory cofactor NHE-RF3 OS=Bos taurus GN=PDZK1 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 34/58 (58%)

Query: 10  IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
           IK + P SPA  AGL   D VVAVN +++  L +  VV++I+       LLVV KE D
Sbjct: 267 IKDIDPKSPAEKAGLKNNDLVVAVNGKSVESLDHDSVVEMIRKGGDQTSLLVVDKETD 324

A scaffold protein that connects plasma membrane proteins and regulatory components, regulating their surface expression in epithelial cells apical domains. May be involved in the coordination of a diverse range of regulatory processes for ion transport and second messenger cascades. In complex with SLC9A3R1, may cluster proteins that are functionally dependent in a mutual fashion and modulate the trafficking and the activity of the associated membrane proteins. May play a role in the cellular mechanisms associated with multidrug resistance through its interaction with ABCC2 and PDZK1IP1. May potentiate the CFTR chloride channel activity. May function to connect SCARB1 with the cellular machineries for intracellular cholesterol transport and/or metabolism. May be involved in the regulation of proximal tubular Na(+)-dependent inorganic phosphate cotransport therefore playing an important role in tubule function.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
328723163	1671	PREDICTED: hypothetical protein LOC10057	0.864	0.041	0.614	7e-18
328723159	1658	PREDICTED: hypothetical protein LOC10057	0.864	0.042	0.614	8e-18
328723167	1434	PREDICTED: hypothetical protein LOC10057	0.864	0.048	0.614	1e-17
328723165	1421	PREDICTED: hypothetical protein LOC10057	0.864	0.049	0.614	2e-17
328723161	1594	PREDICTED: hypothetical protein LOC10057	0.827	0.042	0.597	1e-15
328723157	1581	PREDICTED: hypothetical protein LOC10057	0.827	0.042	0.597	1e-15
242008479	1702	conserved hypothetical protein [Pediculu	0.864	0.041	0.571	3e-15
383847432	2296	PREDICTED: uncharacterized protein LOC10	0.864	0.030	0.585	8e-15
270013936	1997	hypothetical protein TcasGA2_TC012615 [T	0.864	0.035	0.585	9e-15
189241157	1655	PREDICTED: similar to Rho GTPase activat	0.864	0.042	0.585	2e-14

>gi|328723163|ref|XP_003247776.1| PREDICTED: hypothetical protein LOC100574987 isoform 4 [Acyrthosiphon pisum]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/70 (61%), Positives = 55/70 (78%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           DEPMDTIF+KHVR   PA+ AGL  GDR+++VN +T+A   YA VVQ+IQ +  +L+LLV
Sbjct: 75  DEPMDTIFVKHVREFGPASVAGLSTGDRIISVNGETVAGKSYAHVVQVIQQTQCHLYLLV 134

Query: 62  VPKENDLLQL 71
           VP END+LQL
Sbjct: 135 VPMENDILQL 144

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723159|ref|XP_003247774.1| PREDICTED: hypothetical protein LOC100574987 isoform 2 [Acyrthosiphon pisum]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/70 (61%), Positives = 55/70 (78%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           DEPMDTIF+KHVR   PA+ AGL  GDR+++VN +T+A   YA VVQ+IQ +  +L+LLV
Sbjct: 75  DEPMDTIFVKHVREFGPASVAGLSTGDRIISVNGETVAGKSYAHVVQVIQQTQCHLYLLV 134

Query: 62  VPKENDLLQL 71
           VP END+LQL
Sbjct: 135 VPMENDILQL 144

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723167|ref|XP_003247778.1| PREDICTED: hypothetical protein LOC100574987 isoform 6 [Acyrthosiphon pisum]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/70 (61%), Positives = 55/70 (78%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           DEPMDTIF+KHVR   PA+ AGL  GDR+++VN +T+A   YA VVQ+IQ +  +L+LLV
Sbjct: 75  DEPMDTIFVKHVREFGPASVAGLSTGDRIISVNGETVAGKSYAHVVQVIQQTQCHLYLLV 134

Query: 62  VPKENDLLQL 71
           VP END+LQL
Sbjct: 135 VPMENDILQL 144

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723165|ref|XP_003247777.1| PREDICTED: hypothetical protein LOC100574987 isoform 5 [Acyrthosiphon pisum]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/70 (61%), Positives = 55/70 (78%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           DEPMDTIF+KHVR   PA+ AGL  GDR+++VN +T+A   YA VVQ+IQ +  +L+LLV
Sbjct: 75  DEPMDTIFVKHVREFGPASVAGLSTGDRIISVNGETVAGKSYAHVVQVIQQTQCHLYLLV 134

Query: 62  VPKENDLLQL 71
           VP END+LQL
Sbjct: 135 VPMENDILQL 144

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723161|ref|XP_003247775.1| PREDICTED: hypothetical protein LOC100574987 isoform 3 [Acyrthosiphon pisum]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/67 (59%), Positives = 52/67 (77%)

Query: 5  MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64
          MDTIF+KHVR   PA+ AGL  GDR+++VN +T+A   YA VVQ+IQ +  +L+LLVVP 
Sbjct: 1  MDTIFVKHVREFGPASVAGLSTGDRIISVNGETVAGKSYAHVVQVIQQTQCHLYLLVVPM 60

Query: 65 ENDLLQL 71
          END+LQL
Sbjct: 61 ENDILQL 67

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723157|ref|XP_003247773.1| PREDICTED: hypothetical protein LOC100574987 isoform 1 [Acyrthosiphon pisum]

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/67 (59%), Positives = 52/67 (77%)

Query: 5  MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64
          MDTIF+KHVR   PA+ AGL  GDR+++VN +T+A   YA VVQ+IQ +  +L+LLVVP 
Sbjct: 1  MDTIFVKHVREFGPASVAGLSTGDRIISVNGETVAGKSYAHVVQVIQQTQCHLYLLVVPM 60

Query: 65 ENDLLQL 71
          END+LQL
Sbjct: 61 ENDILQL 67

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008479|ref|XP_002425031.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508680|gb|EEB12293.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 53/70 (75%)

Query: 1  MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
          ++EPMDTIF+K V   + A AAGL  GDR+++VN +TIA   YA+VVQ I N+P  L+LL
Sbjct: 16 LNEPMDTIFVKAVHEGTSAHAAGLETGDRILSVNGETIAGKTYAQVVQQIHNTPERLNLL 75

Query: 61 VVPKENDLLQ 70
          VVPKE D++Q
Sbjct: 76 VVPKEEDIIQ 85

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847432|ref|XP_003699358.1| PREDICTED: uncharacterized protein LOC100876381 [Megachile rotundata]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 53/70 (75%)

Query: 1   MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
           +DEPMDTIF+K VR +SPAA AGL  GDR+V+V+ +   D  YA+VVQ IQ +  +L LL
Sbjct: 93  IDEPMDTIFVKQVRANSPAAEAGLRTGDRLVSVDGKATRDEQYAKVVQRIQQAGPWLRLL 152

Query: 61  VVPKENDLLQ 70
           VV KE+D+LQ
Sbjct: 153 VVSKEDDILQ 162

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013936|gb|EFA10384.1| hypothetical protein TcasGA2_TC012615 [Tribolium castaneum]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 53/70 (75%)

Query: 1   MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
           +  PMDTIF+K+V+  SPA  AGL  GDR+V VN+  + +  YA+VVQLIQN+P  L LL
Sbjct: 114 LSAPMDTIFVKNVKDPSPAKRAGLQKGDRLVKVNDVLVTNKSYAQVVQLIQNTPDCLQLL 173

Query: 61  VVPKENDLLQ 70
           VVPKE+D+LQ
Sbjct: 174 VVPKEDDILQ 183

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241157|ref|XP_974551.2| PREDICTED: similar to Rho GTPase activating protein 21 [Tribolium castaneum]

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 53/70 (75%)

Query: 1   MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
           +  PMDTIF+K+V+  SPA  AGL  GDR+V VN+  + +  YA+VVQLIQN+P  L LL
Sbjct: 78  LSAPMDTIFVKNVKDPSPAKRAGLQKGDRLVKVNDVLVTNKSYAQVVQLIQNTPDCLQLL 137

Query: 61  VVPKENDLLQ 70
           VVPKE+D+LQ
Sbjct: 138 VVPKEDDILQ 147

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
ZFIN|ZDB-GENE-030131-4944	1793	arhgap21b "Rho GTPase activati	0.975	0.044	0.493	9.4e-14
UNIPROTKB|F1NS04	1955	ARHGAP21 "Uncharacterized prot	0.851	0.035	0.507	7.3e-13
UNIPROTKB|F1MMP0	1248	Bt.110851 "Uncharacterized pro	0.876	0.056	0.507	9e-13
UNIPROTKB|E7ESW5	1131	ARHGAP21 "Rho GTPase-activatin	0.851	0.061	0.492	1.3e-12
UNIPROTKB|F8W9U9	1165	ARHGAP21 "Rho GTPase-activatin	0.851	0.059	0.492	1.3e-12
UNIPROTKB|F1SB02	1137	ARHGAP23 "Uncharacterized prot	0.851	0.060	0.507	1.7e-12
UNIPROTKB|F1P8A3	1141	ARHGAP23 "Uncharacterized prot	0.851	0.060	0.507	1.7e-12
UNIPROTKB|J9NRV8	1143	ARHGAP23 "Uncharacterized prot	0.851	0.060	0.507	1.7e-12
UNIPROTKB|J9P272	1151	ARHGAP23 "Uncharacterized prot	0.851	0.059	0.507	1.7e-12
UNIPROTKB|I3LCH8	1157	ARHGAP23 "Uncharacterized prot	0.851	0.059	0.507	1.7e-12

ZFIN|ZDB-GENE-030131-4944 arhgap21b "Rho GTPase activating protein 21b" [Danio rerio (taxid:7955)]

 Score = 194 (73.4 bits), Expect = 9.4e-14, P = 9.4e-14
 Identities = 41/83 (49%), Positives = 55/83 (66%)

Query:     3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
             EPMDTIF+K V+   PA +AGL  GDR+V VN ++I    Y++V+ LIQNS  +L L V+
Sbjct:    98 EPMDTIFVKQVKEGGPAHSAGLCTGDRIVKVNGESIIGKTYSQVIGLIQNSHTFLELCVM 157

Query:    63 PKENDLLQL--TSDLIF--HDFY 81
             PK+ D+LQL  + D     HD Y
Sbjct:   158 PKDEDILQLAYSQDAYLKGHDAY 180

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

UNIPROTKB|F1NS04 ARHGAP21 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 186 (70.5 bits), Expect = 7.3e-13, P = 7.3e-13
 Identities = 35/69 (50%), Positives = 49/69 (71%)

Query:     3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
             EPMDTIF+K V+   PA  AGL  GDR++ VN +++    Y++V+ LIQNS + L L V+
Sbjct:    76 EPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDSMLELSVM 135

Query:    63 PKENDLLQL 71
             PK+ D+LQL
Sbjct:   136 PKDEDILQL 144

GO:0005543 "phospholipid binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0051683 "establishment of Golgi localization" evidence=IEA

GO:0051684 "maintenance of Golgi location" evidence=IEA

GO:0072384 "organelle transport along microtubule" evidence=IEA

UNIPROTKB|F1MMP0 Bt.110851 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 183 (69.5 bits), Expect = 9.0e-13, P = 9.0e-13
 Identities = 36/71 (50%), Positives = 50/71 (70%)

Query:     3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
             EPMDTIF+K+V+   PA  AGL  GDR+V VN +++    Y++V+ LIQNS   L L ++
Sbjct:    94 EPMDTIFVKNVKDDGPAHRAGLRTGDRLVKVNGESVIGKTYSQVIALIQNSDDTLELSIM 153

Query:    63 PKENDLLQLTS 73
             PK+ D+LQL S
Sbjct:   154 PKDEDILQLDS 164

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|E7ESW5 ARHGAP21 "Rho GTPase-activating protein 21" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 34/69 (49%), Positives = 48/69 (69%)

Query:     3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
             EPMDTIF+K V+   PA  AGL  GDR++ VN +++    Y++V+ LIQNS   L L V+
Sbjct:    97 EPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVM 156

Query:    63 PKENDLLQL 71
             PK+ D+LQ+
Sbjct:   157 PKDEDILQV 165

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F8W9U9 ARHGAP21 "Rho GTPase-activating protein 21" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 34/69 (49%), Positives = 48/69 (69%)

Query:     3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
             EPMDTIF+K V+   PA  AGL  GDR++ VN +++    Y++V+ LIQNS   L L V+
Sbjct:    97 EPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVM 156

Query:    63 PKENDLLQL 71
             PK+ D+LQ+
Sbjct:   157 PKDEDILQV 165

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1SB02 ARHGAP23 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 180 (68.4 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 35/69 (50%), Positives = 49/69 (71%)

Query:     3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
             EPMDTIF+K+V+   PA  AGL  GDR+V VN +++    Y++V+ LIQNS   L L ++
Sbjct:    77 EPMDTIFVKNVKDDGPAHRAGLRTGDRLVKVNGESVIGKTYSQVIALIQNSDDTLELSIM 136

Query:    63 PKENDLLQL 71
             PK+ D+LQL
Sbjct:   137 PKDEDILQL 145

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1P8A3 ARHGAP23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 35/69 (50%), Positives = 49/69 (71%)

Query:     3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
             EPMDTIF+K+V+   PA  AGL  GDR+V VN +++    Y++V+ LIQNS   L L ++
Sbjct:    94 EPMDTIFVKNVKDDGPAHRAGLRTGDRLVKVNGESVIGKTYSQVIALIQNSDDTLELSIM 153

Query:    63 PKENDLLQL 71
             PK+ D+LQL
Sbjct:   154 PKDEDILQL 162

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|J9NRV8 ARHGAP23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 35/69 (50%), Positives = 49/69 (71%)

Query:     3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
             EPMDTIF+K+V+   PA  AGL  GDR+V VN +++    Y++V+ LIQNS   L L ++
Sbjct:    84 EPMDTIFVKNVKDDGPAHRAGLRTGDRLVKVNGESVIGKTYSQVIALIQNSDDTLELSIM 143

Query:    63 PKENDLLQL 71
             PK+ D+LQL
Sbjct:   144 PKDEDILQL 152

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|J9P272 ARHGAP23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 35/69 (50%), Positives = 49/69 (71%)

Query:     3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
             EPMDTIF+K+V+   PA  AGL  GDR+V VN +++    Y++V+ LIQNS   L L ++
Sbjct:   100 EPMDTIFVKNVKDDGPAHRAGLRTGDRLVKVNGESVIGKTYSQVIALIQNSDDTLELSIM 159

Query:    63 PKENDLLQL 71
             PK+ D+LQL
Sbjct:   160 PKDEDILQL 168

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|I3LCH8 ARHGAP23 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 180 (68.4 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 35/69 (50%), Positives = 49/69 (71%)

Query:     3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
             EPMDTIF+K+V+   PA  AGL  GDR+V VN +++    Y++V+ LIQNS   L L ++
Sbjct:    77 EPMDTIFVKNVKDDGPAHRAGLRTGDRLVKVNGESVIGKTYSQVIALIQNSDDTLELSIM 136

Query:    63 PKENDLLQL 71
             PK+ D+LQL
Sbjct:   137 PKDEDILQL 145

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2RUV4	RHG21_XENTR	No assigned EC number	0.5072	0.8518	0.0356	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	81
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	2e-17
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	2e-15
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	7e-12
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	3e-11
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	1e-10
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	4e-10
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	2e-06
COG3975	558	COG3975, COG3975, Predicted protease with the C-te	2e-05
cd00990	80	cd00990, PDZ_glycyl_aminopeptidase, PDZ domain ass	3e-05
TIGR00225	334	TIGR00225, prc, C-terminal peptidase (prc)	3e-05
COG0793	406	COG0793, Prc, Periplasmic protease [Cell envelope	4e-05
TIGR02037	428	TIGR02037, degP_htrA_DO, periplasmic serine protea	5e-05
pfam13180	81	pfam13180, PDZ_2, PDZ domain	8e-05
PRK10779	449	PRK10779, PRK10779, zinc metallopeptidase RseP; Pr	2e-04
PRK10942	473	PRK10942, PRK10942, serine endoprotease; Provision	2e-04
TIGR02037	428	TIGR02037, degP_htrA_DO, periplasmic serine protea	3e-04
PLN00049	389	PLN00049, PLN00049, carboxyl-terminal processing p	3e-04
TIGR00054	419	TIGR00054, TIGR00054, RIP metalloprotease RseP	0.001
PRK10942	473	PRK10942, PRK10942, serine endoprotease; Provision	0.002
COG0750	375	COG0750, COG0750, Predicted membrane-associated Zn	0.002
TIGR03900	973	TIGR03900, prc_long_Delta, putative carboxyl-termi	0.002
PRK10139	455	PRK10139, PRK10139, serine endoprotease; Provision	0.004
PRK10898	353	PRK10898, PRK10898, serine endoprotease; Provision	0.004

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 69.1 bits (170), Expect = 2e-17
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          IF+  V P  PA   GL  GDR++ VN  ++  L + E V+L++NS   + L V 
Sbjct: 28 IFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 63.9 bits (156), Expect = 2e-15
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64
          + +  V P SPAA AGL  GD ++ VN  ++  L + E V L++ +   + L V+  
Sbjct: 28 VVVSSVVPGSPAAKAGLRVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG 84

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 54.9 bits (133), Expect = 7e-12
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 6  DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
            IF+  V P   A A GL  GDR++++N Q + +L + E V  ++ S   + L +
Sbjct: 24 PGIFVSEVLPGGAAEAGGLQEGDRILSINGQDLENLSHDEAVLALKGSGGEVTLTI 79

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 53.1 bits (128), Expect = 3e-11
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
                + +  V P SPA  AGL  GD ++AVN   + +L   +V +L++   
Sbjct: 9  GGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEV 61

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 51.8 bits (125), Expect = 1e-10
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 1  MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
          +      + I  V P SPAA AG+  GD +VA++ + +  L   +VV+L++   
Sbjct: 8  LKYDDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKA 61

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 50.3 bits (121), Expect = 4e-10
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 4  PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
          P     I  V P SPAA AGL  GDR++A+N Q I    + ++V  +Q +P     L V 
Sbjct: 10 PPIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLTVE 67

Query: 64 KENDLLQLT 72
          +  + + LT
Sbjct: 68 RNGETITLT 76

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 41.5 bits (98), Expect = 2e-06
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55
          + +  V P SPAA AGL PGD ++AVN + +  +  A++ + +     
Sbjct: 26 VLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSV--ADLRRALAELKP 71

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

>gnl|CDD|226483 COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only]

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6   DTIFIKHVRPHSPAAAAGLVPGDRVVAVN 34
               I  V P  PA  AGL PGD++VA+N
Sbjct: 462 GHEKITFVFPGGPAYKAGLSPGDKIVAIN 490

Length = 558

>gnl|CDD|238490 cd00990, PDZ_glycyl_aminopeptidase, PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

 Score = 38.2 bits (89), Expect = 3e-05
 Identities = 15/25 (60%), Positives = 17/25 (68%)

Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVN 34
          +  VR  SPA  AGLV GD +VAVN
Sbjct: 16 VTFVRDDSPADKAGLVAGDELVAVN 40

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 80

>gnl|CDD|232883 TIGR00225, prc, C-terminal peptidase (prc)

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 5   MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
              I I      SPA  AG+ PGD+++ +N +++A +   + V LI+   
Sbjct: 61  DGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKK 110

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database [Protein fate, Degradation of proteins, peptides, and glycopeptides, Protein fate, Protein modification and repair]. Length = 334

>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 15/53 (28%), Positives = 29/53 (54%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
            E +  + +      SPAA AG+ PGD ++ ++ +++  +   E V+LI+  P
Sbjct: 108 MEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKP 160

Length = 406

>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family

 Score = 39.1 bits (92), Expect = 5e-05
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 13  VRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVV 62
           V   SPAA AGL PGD +++VN Q ++ +  AE+ +++  +     + LL++
Sbjct: 369 VVSGSPAARAGLQPGDVILSVNQQPVSSV--AELRKVLARAKKGGRVALLIL 418

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428

>gnl|CDD|221961 pfam13180, PDZ_2, PDZ domain

 Score = 36.8 bits (86), Expect = 8e-05
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLP 42
          +  V+  SPAA AGL PGD +++++ + +  L 
Sbjct: 17 VVSVKEGSPAAKAGLKPGDIILSIDGKKVNSLT 49

Length = 81

>gnl|CDD|182723 PRK10779, PRK10779, zinc metallopeptidase RseP; Provisional

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 13  VRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLLQLT 72
           V+P+S A+ AGL  GDR+V V+ Q +    +   V L++++P     L + ++   L LT
Sbjct: 228 VQPNSAASKAGLQAGDRIVKVDGQPLTQ--WQTFVTLVRDNPGKPLALEIERQGSPLSLT 285

Length = 449

>gnl|CDD|236802 PRK10942, PRK10942, serine endoprotease; Provisional

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 10  IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
           + +V+P +PAA  GL  GD ++  N Q + ++  AE+ +++ + P+ L L
Sbjct: 412 VDNVKPGTPAAQIGLKKGDVIIGANQQPVKNI--AELRKILDSKPSVLAL 459

Length = 473

>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 9   FIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPYA 44
            +  V P SPA  AGL  GD + +VN + I   ADL  A
Sbjct: 260 LVAQVLPGSPAEKAGLKAGDVITSVNGKPISSFADLRRA 298

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428

>gnl|CDD|177681 PLN00049, PLN00049, carboxyl-terminal processing protease; Provisional

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 15  PHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQ---NSPAYLHLLVVPKENDL 68
           P  PAA AG+ PGD ++A++  +   L   E    +Q    S   L L   P+   +
Sbjct: 111 PGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPETRLV 167

Length = 389

>gnl|CDD|232801 TIGR00054, TIGR00054, RIP metalloprotease RseP

 Score = 35.6 bits (82), Expect = 0.001
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 10  IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL 69
           +  V P+SPA  AGL  GD + ++N + +    + + V  ++ +P     + V +  + L
Sbjct: 206 LSDVTPNSPAEKAGLKEGDYIQSINGEKL--RSWTDFVSAVKENPGKSMDIKVERNGETL 263

Query: 70  QLTSDLIFHD 79
            ++  L    
Sbjct: 264 SIS--LTPEA 271

Members of this nearly universal bacterial protein family are regulated intramembrane proteolysis (RIP) proteases. Older and synonymous gene symbols include yaeL in E. coli, mmpA in Caulobacter crescentus, etc. This family includes a region that hits the PDZ domain, found in a number of proteins targeted to the membrane by binding to a peptide ligand. The N-terminal region of this family contains a perfectly conserved motif HEXGH as found in a number of metalloproteinases, where the Glu is the active site and the His residues coordinate the metal cation [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 419

>gnl|CDD|236802 PRK10942, PRK10942, serine endoprotease; Provisional

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 9   FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIA 39
           F+  V P+S AA AG+  GD + ++N + I+
Sbjct: 314 FVSQVLPNSSAAKAGIKAGDVITSLNGKPIS 344

Length = 473

>gnl|CDD|223821 COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 9   FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLP 42
            +  V P S AA AGL PGDR+VAV+ + +A   
Sbjct: 132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVASWD 165

Length = 375

>gnl|CDD|234386 TIGR03900, prc_long_Delta, putative carboxyl-terminal-processing protease, deltaproteobacterial

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 13  VRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
           V P +PAA AGL   D +V +++++  ++   + V  ++  P
Sbjct: 158 VIPGTPAARAGLQRNDVIVKIDDESTVNMTLNDAVGRLRGPP 199

This model describes a multidomain protein of about 1070 residues, restricted to the order Myxococcales in the Deltaproteobacteria. Members contain a PDZ domain (pfam00595), an S41 family peptidase domain (pfam03572), and an SH3 domain (pfam06347). A core region of this family, including PDZ and S41 regions, is described by TIGR00225, C-terminal processing peptidase, which recognizes the Prc protease. The species distribution of this family approximates that of largely Deltaproteobacterial C-terminal putative protein-sorting domain, TIGR03901, analogous to LPXTG and PEP-CTERM, but the co-occurrence may reflect shared restriction to the Myxococcales rather than a substrate/target relationship. Length = 973

>gnl|CDD|182262 PRK10139, PRK10139, serine endoprotease; Provisional

 Score = 33.8 bits (77), Expect = 0.004
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
           I I  V   SPAA AGL   D ++ VN   +  +  AE+ +++   PA + L +V + N+
Sbjct: 392 IKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIV-RGNE 448

Query: 68  LLQL 71
            + L
Sbjct: 449 SIYL 452

Length = 455

>gnl|CDD|182820 PRK10898, PRK10898, serine endoprotease; Provisional

 Score = 33.4 bits (77), Expect = 0.004
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 3   EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQ 36
           + +  I +  V P  PAA AG+   D +++VNN+
Sbjct: 276 DQLQGIVVNEVSPDGPAAKAGIQVNDLIISVNNK 309

Length = 353

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	99.54
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.49
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	99.49
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	99.38
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	99.38
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	99.37
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	99.34
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	99.34
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	99.31
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	99.3
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	99.3
PRK10139	455	serine endoprotease; Provisional	99.18
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	99.14
PRK10139	455	serine endoprotease; Provisional	99.12
KOG3550|consensus	207		99.11
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.09
PRK10942	473	serine endoprotease; Provisional	99.09
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	99.09
PLN00049	389	carboxyl-terminal processing protease; Provisional	99.08
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.08
PRK10898	353	serine endoprotease; Provisional	99.08
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	99.08
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.07
PRK10942	473	serine endoprotease; Provisional	99.06
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.04
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.0
KOG3553|consensus	124		98.97
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.94
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.81
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	98.79
KOG3209|consensus	984		98.77
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	98.75
KOG3580|consensus	1027		98.7
PRK11186	667	carboxy-terminal protease; Provisional	98.68
KOG3209|consensus	984		98.59
KOG3580|consensus	1027		98.55
KOG3549|consensus	505		98.52
KOG3606|consensus	358		98.52
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	98.52
KOG3129|consensus	231		98.49
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	98.44
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	98.34
KOG1892|consensus	1629		98.3
KOG3651|consensus	429		98.3
KOG3551|consensus	506		98.26
PRK09681	276	putative type II secretion protein GspC; Provision	98.25
KOG3552|consensus	1298		98.23
COG3031	275	PulC Type II secretory pathway, component PulC [In	98.14
KOG3542|consensus	1283		98.12
KOG3532|consensus	1051		98.08
KOG3571|consensus	626		97.97
PF12812	78	PDZ_1: PDZ-like domain	97.91
KOG1320|consensus	473		97.89
KOG0609|consensus	542		97.89
COG3975	558	Predicted protease with the C-terminal PDZ domain	97.84
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	97.81
KOG1421|consensus	955		97.68
KOG0606|consensus	1205		97.62
KOG3605|consensus	829		97.28
KOG3938|consensus	334		97.27
KOG3834|consensus	462		96.75
KOG1421|consensus	955		96.66
KOG1738|consensus	638		96.49
COG0750	375	Predicted membrane-associated Zn-dependent proteas	96.31
KOG3605|consensus	829		96.28
KOG2921|consensus	484		94.26
PF11874	183	DUF3394: Domain of unknown function (DUF3394); Int	92.3
KOG4407|consensus	1973		92.08
KOG3834|consensus	462		89.14
KOG4371|consensus	1332		83.11

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=99.54  E-value=1.8e-13  Score=69.42  Aligned_cols=61  Identities=30%  Similarity=0.536  Sum_probs=53.8

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      .+++|..|.++|||+++||++||.|++|||.++.  +..++...+...  +.++.+++.|++...
T Consensus        14 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g~~~   76 (82)
T PF13180_consen   14 GGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDGEEL   76 (82)
T ss_dssp             SSEEEEEESTTSHHHHTTS-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETTEEE
T ss_pred             CeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence            5899999999999999999999999999999998  899999988543  369999999987765

...

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.49  E-value=3.7e-13  Score=67.99  Aligned_cols=57  Identities=37%  Similarity=0.605  Sum_probs=53.2

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV   62 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~   62 (81)
                      .+++|..+.++++|+++||+.||.|++|||.++.++++.++...++..++.+.|++.
T Consensus        25 ~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~   81 (81)
T PF00595_consen   25 KGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ   81 (81)
T ss_dssp             EEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred             CCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence            489999999999999999999999999999999999999999999998888888763

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=99.49  E-value=9.8e-13  Score=66.30  Aligned_cols=63  Identities=22%  Similarity=0.361  Sum_probs=55.2

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      ...|+.|..|.++++|+++||++||.|++|||.++.  ++.++...+...  +..+.+++.|++...
T Consensus         8 ~~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g~~~   72 (79)
T cd00991           8 AVAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPSTTKL   72 (79)
T ss_pred             cCCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECCEEE
Confidence            456899999999999999999999999999999999  889999888764  468889998877544

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=99.38  E-value=1.3e-11  Score=60.50  Aligned_cols=56  Identities=32%  Similarity=0.539  Sum_probs=49.6

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEE
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLV   61 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v   61 (81)
                      .+++|..+.+++||+.+||++||.|++|||.++.+++..++...++... ..+.+++
T Consensus        13 ~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136          13 GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            3899999999999999999999999999999999777799999998765 5677664

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=99.38  E-value=1.5e-11  Score=62.83  Aligned_cols=61  Identities=30%  Similarity=0.489  Sum_probs=53.3

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~   67 (81)
                      ..|++|..+.++++|.++|+++||.|++|||.++.  ++.++...+...  +..+.+.+.|++..
T Consensus        23 ~~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~--~~~~~~~~l~~~~~~~~i~l~v~r~g~~   85 (90)
T cd00987          23 TKGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVK--SVADLRRALAELKPGDKVTLTVLRGGKE   85 (90)
T ss_pred             CCEEEEEEECCCCHHHHcCCCcCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            45899999999999999999999999999999999  888888888664  46888998887644

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=99.37  E-value=1.8e-11  Score=61.29  Aligned_cols=61  Identities=36%  Similarity=0.479  Sum_probs=52.5

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~~   67 (81)
                      ...++|..+.++++|+++||++||+|++|||.++.  ++.++...+... +..+.+++.|++..
T Consensus        11 ~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~~~   72 (79)
T cd00989          11 PIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNGET   72 (79)
T ss_pred             ccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECCEE
Confidence            34588999999999999999999999999999999  888988888764 46888888887654

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=99.34  E-value=4.1e-11  Score=60.45  Aligned_cols=59  Identities=32%  Similarity=0.487  Sum_probs=52.1

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      .+++|..+.++++|+++||++||.|++||+.++.+++..+....+...+..+.+.+.|+
T Consensus        26 ~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r~   84 (85)
T smart00228       26 GGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG   84 (85)
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence            68999999999999999999999999999999998878777777776656888888775

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=99.34  E-value=3.4e-11  Score=60.58  Aligned_cols=56  Identities=38%  Similarity=0.599  Sum_probs=50.1

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEE
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV   61 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v   61 (81)
                      .+++|..+.++++|..+|+++||+|++|||.++..+++.++...+......+.+.+
T Consensus        26 ~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v   81 (82)
T cd00992          26 GGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV   81 (82)
T ss_pred             CCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence            57999999999999999999999999999999998899999999987656666554

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=99.31  E-value=8.3e-11  Score=59.63  Aligned_cols=60  Identities=30%  Similarity=0.486  Sum_probs=52.1

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~   64 (81)
                      ..+++|..+.+++||.++||++||.|++|||.++.+++..++...+... +..+.+++.|+
T Consensus        12 ~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988          12 DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            4678999999999999999999999999999999966558888888653 46888998887

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=99.30  E-value=5.9e-11  Score=59.64  Aligned_cols=61  Identities=26%  Similarity=0.436  Sum_probs=52.3

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~   68 (81)
                      ..|+.|..|.++++|.. +|++||.|++|||.++.  ++.++...+..  .+..+.+++.|++...
T Consensus         7 ~~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g~~~   69 (79)
T cd00986           7 YHGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREEKEL   69 (79)
T ss_pred             ecCEEEEEECCCCchhh-CCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence            46899999999999997 79999999999999999  88899888874  2368899998877654

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=99.30  E-value=3.7e-11  Score=60.32  Aligned_cols=62  Identities=27%  Similarity=0.333  Sum_probs=49.4

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ...++.|..|.++++|+.+||++||+|++|||.++.  ++.++...+ ..+..+.+++.|++...
T Consensus        10 ~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~--~~~~~l~~~-~~~~~v~l~v~r~g~~~   71 (80)
T cd00990          10 EEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVD--ALQDRLKEY-QAGDPVELTVFRDDRLI   71 (80)
T ss_pred             cCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhH--HHHHHHHhc-CCCCEEEEEEEECCEEE
Confidence            345799999999999999999999999999999998  555544433 23368888888876544

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK10139 serine endoprotease; Provisional

Probab=99.18  E-value=4.7e-10  Score=72.12  Aligned_cols=61  Identities=31%  Similarity=0.463  Sum_probs=55.4

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      .|++|..|.++++|.++||++||.|++|||+++.  +++++...+...++.+.+.+.|++...
T Consensus       390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~~~  450 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNESI  450 (455)
T ss_pred             CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCEEE
Confidence            5799999999999999999999999999999999  899999999876678889999987654

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=99.14  E-value=6.8e-10  Score=66.91  Aligned_cols=63  Identities=21%  Similarity=0.159  Sum_probs=55.0

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      ...|+.|..+.++++++++||+.||.|++|||+++.  ++.++...+...  +..+.+++.|++...
T Consensus       189 ~~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G~~~  253 (259)
T TIGR01713       189 KLEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDGQRE  253 (259)
T ss_pred             ceeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECCEEE
Confidence            346999999999999999999999999999999999  888888888764  258999999988654

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>PRK10139 serine endoprotease; Provisional

Probab=99.12  E-value=1e-09  Score=70.55  Aligned_cols=62  Identities=24%  Similarity=0.396  Sum_probs=54.5

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~   68 (81)
                      ..|++|..|.++|||+++||++||+|++|||+++.  ++.++...+..  .+..+.+++.|++...
T Consensus       289 ~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~V~R~G~~~  352 (455)
T PRK10139        289 QRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGKPL  352 (455)
T ss_pred             CCceEEEEECCCChHHHCCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            46899999999999999999999999999999999  89999888865  3468899999887654

>KOG3550|consensus

Probab=99.11  E-value=5.3e-10  Score=62.23  Aligned_cols=63  Identities=24%  Similarity=0.379  Sum_probs=56.6

Q ss_pred             CCCCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           2 DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         2 ~~~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      .+++.+++|+.+.||+.|++.| |+.||.++++||..+++..++....+++...+.+.+.+.-.
T Consensus       111 keqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvvryt  174 (207)
T KOG3550|consen  111 KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVVRYT  174 (207)
T ss_pred             cccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEEecC
Confidence            4688999999999999999987 99999999999999999999999999988878888877543

>TIGR00054 RIP metalloprotease RseP

Probab=99.09  E-value=1e-09  Score=69.97  Aligned_cols=61  Identities=25%  Similarity=0.473  Sum_probs=53.7

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~~~   68 (81)
                      .++.|..|.++|||+++|+++||+|++|||+++.  ++.++...+.... ..+.+++.|++...
T Consensus       203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~~~  264 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLR--SWTDFVSAVKENPGKSMDIKVERNGETL  264 (420)
T ss_pred             cCcEEEEECCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCceEEEEEECCEEE
Confidence            3688999999999999999999999999999999  8999999887643 57889998887654

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10942 serine endoprotease; Provisional

Probab=99.09  E-value=1.2e-09  Score=70.51  Aligned_cols=61  Identities=26%  Similarity=0.539  Sum_probs=55.3

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      .+++|..|.++|+|+++||++||.|++||++++.  ++.++.+.+...+..+.+++.|++...
T Consensus       408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~--s~~dl~~~l~~~~~~v~l~V~R~g~~~  468 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVK--NIAELRKILDSKPSVLALNIQRGDSSI  468 (473)
T ss_pred             CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCEEE
Confidence            4789999999999999999999999999999999  899999999886678889999987654

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=99.09  E-value=1.4e-09  Score=67.94  Aligned_cols=61  Identities=23%  Similarity=0.378  Sum_probs=54.2

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~   68 (81)
                      .|++|..|.+++||+++||++||+|++|||+++.  ++.++...+..  .+..+.+++.|++...
T Consensus       278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g~~~  340 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQGKQL  340 (351)
T ss_pred             ccceEeecCCCChHHHCCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            6899999999999999999999999999999999  88999888865  3468999999987654

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=99.08  E-value=2.4e-09  Score=67.70  Aligned_cols=61  Identities=23%  Similarity=0.388  Sum_probs=52.6

Q ss_pred             ceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCCc
Q psy5713           7 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKEND   67 (81)
Q Consensus         7 ~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~~   67 (81)
                      +++|..|.++|||.++||++||+|++|||+++.++++.++...+... +..+.+++.|++..
T Consensus       103 g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~~  164 (389)
T PLN00049        103 GLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPET  164 (389)
T ss_pred             cEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            79999999999999999999999999999999987788888777653 35888888887643

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=99.08  E-value=2.2e-09  Score=68.53  Aligned_cols=61  Identities=30%  Similarity=0.516  Sum_probs=54.8

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      .|++|..|.++|+|.++||++||.|++|||+++.  ++.++.+++...  ++.+.+.+.|++...
T Consensus       362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~~~  424 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGATI  424 (428)
T ss_pred             CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            6899999999999999999999999999999999  889999988753  468999999987654

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10898 serine endoprotease; Provisional

Probab=99.08  E-value=2.1e-09  Score=67.22  Aligned_cols=62  Identities=24%  Similarity=0.467  Sum_probs=54.0

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~   68 (81)
                      ..|++|..|.+++||+++||+.||+|++|||+++.  ++.++...+..  .+..+.+++.|++...
T Consensus       278 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~--s~~~l~~~l~~~~~g~~v~l~v~R~g~~~  341 (353)
T PRK10898        278 LQGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDKQL  341 (353)
T ss_pred             CCeEEEEEECCCChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            47899999999999999999999999999999999  88888877764  3368999999987654

>TIGR00225 prc C-terminal peptidase (prc)

Probab=99.08  E-value=2.2e-09  Score=66.59  Aligned_cols=63  Identities=25%  Similarity=0.447  Sum_probs=52.9

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc-CCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN-SPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~-~~~~~~l~v~~~~~~   67 (81)
                      .++++|..|.+++||+++||++||+|++|||.++.+++..++...+.. .+..+.+++.|++..
T Consensus        61 ~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~  124 (334)
T TIGR00225        61 DGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKS  124 (334)
T ss_pred             CCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCC
Confidence            357889999999999999999999999999999997766777777754 346889999887643

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=99.07  E-value=1.7e-09  Score=69.00  Aligned_cols=62  Identities=27%  Similarity=0.431  Sum_probs=54.3

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      ..|++|..|.++|||+++||+.||.|++|||.++.  ++.++...+...  +..+.+++.|++...
T Consensus       256 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~--~~~~~~~~l~~~~~g~~v~l~v~R~g~~~  319 (428)
T TIGR02037       256 QRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPIS--SFADLRRAIGTLKPGKKVTLGILRKGKEK  319 (428)
T ss_pred             CCceEEEEccCCCChHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            46899999999999999999999999999999999  888888887653  368999999987654

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10942 serine endoprotease; Provisional

Probab=99.06  E-value=2.7e-09  Score=68.95  Aligned_cols=62  Identities=24%  Similarity=0.398  Sum_probs=54.4

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      ..|++|..|.+++||+++||+.||+|+++||+++.  ++.++...+...  +..+.+.+.|++...
T Consensus       310 ~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~G~~~  373 (473)
T PRK10942        310 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGKPV  373 (473)
T ss_pred             CCceEEEEECCCChHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCeEE
Confidence            46899999999999999999999999999999999  889998888653  368899999887654

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.04  E-value=2.9e-09  Score=68.36  Aligned_cols=60  Identities=32%  Similarity=0.546  Sum_probs=52.8

Q ss_pred             ceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCCcc
Q psy5713           7 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKENDL   68 (81)
Q Consensus         7 ~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~~~   68 (81)
                      ++.|..|.++|||+++|+++||+|+++||+++.  ++.++...+.... +.+.+++.|++...
T Consensus       222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~~~  282 (449)
T PRK10779        222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLALEIERQGSPL  282 (449)
T ss_pred             CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEEEEEEECCEEE
Confidence            478999999999999999999999999999999  8999998887643 58889999887654

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.00  E-value=4.1e-09  Score=67.70  Aligned_cols=59  Identities=22%  Similarity=0.289  Sum_probs=50.3

Q ss_pred             eEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCCcc
Q psy5713           8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKENDL   68 (81)
Q Consensus         8 ~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~~~   68 (81)
                      ..|..|.++|||+++|+++||+|+++||+++.  ++.++...+....  .++.+++.|+++..
T Consensus       128 ~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~--~~~~l~~~v~~~~~g~~v~v~v~R~gk~~  188 (449)
T PRK10779        128 PVVGEIAPNSIAAQAQIAPGTELKAVDGIETP--DWDAVRLALVSKIGDESTTITVAPFGSDQ  188 (449)
T ss_pred             ccccccCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhhccCCceEEEEEeCCccc
Confidence            46889999999999999999999999999999  7888877665432  57999999987644

>KOG3553|consensus

Probab=98.97  E-value=9.4e-10  Score=57.23  Aligned_cols=59  Identities=27%  Similarity=0.377  Sum_probs=49.5

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP   63 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~   63 (81)
                      .+.|++|.+|..||||+.+||+.+|+|+++||....-.+++...+.+++. +.+.+.+.|
T Consensus        57 tD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k~-~vl~mLVaR  115 (124)
T KOG3553|consen   57 TDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITKE-EVLRMLVAR  115 (124)
T ss_pred             CCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhHh-HHHHHHHHh
Confidence            46899999999999999999999999999999998877899988888764 444444443

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.94  E-value=1.1e-08  Score=65.11  Aligned_cols=60  Identities=25%  Similarity=0.483  Sum_probs=54.1

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCC
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKE   65 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~   65 (81)
                      +++.|....+++||+++|+++||.|++|||.++.+.+..++.+.++... ..++|++.|.+
T Consensus       112 ~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~  172 (406)
T COG0793         112 GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAG  172 (406)
T ss_pred             CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcC
Confidence            7888999999999999999999999999999999888888888887765 59999999963

>TIGR00054 RIP metalloprotease RseP

Probab=98.81  E-value=3.1e-08  Score=63.29  Aligned_cols=61  Identities=23%  Similarity=0.337  Sum_probs=51.4

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+..|..|.++|||+++|+++||+|+++||+++.  ++.++...+.....++.+.+.|+++.
T Consensus       127 ~~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~--~~~dl~~~ia~~~~~v~~~I~r~g~~  187 (420)
T TIGR00054       127 EVGPVIELLDKNSIALEAGIEPGDEILSVNGNKIP--GFKDVRQQIADIAGEPMVEILAEREN  187 (420)
T ss_pred             CCCceeeccCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhhcccceEEEEEecCc
Confidence            35778999999999999999999999999999999  88888887765556777777775443

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=98.79  E-value=5e-08  Score=62.31  Aligned_cols=53  Identities=28%  Similarity=0.355  Sum_probs=44.4

Q ss_pred             EEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE-eCCC
Q psy5713          10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV-PKEN   66 (81)
Q Consensus        10 V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~-~~~~   66 (81)
                      |..|.|+|+|+++|+++||+|++|||+++.  +|.++...+..  ..+.+.+. +++.
T Consensus         2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~--Dw~D~~~~l~~--e~l~L~V~~rdGe   55 (433)
T TIGR03279         2 ISAVLPGSIAEELGFEPGDALVSINGVAPR--DLIDYQFLCAD--EELELEVLDANGE   55 (433)
T ss_pred             cCCcCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHhcC--CcEEEEEEcCCCe
Confidence            567899999999999999999999999999  88998877743  56777775 4443

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>KOG3209|consensus

Probab=98.77  E-value=1.8e-08  Score=67.23  Aligned_cols=56  Identities=39%  Similarity=0.622  Sum_probs=52.5

Q ss_pred             EEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713          10 IKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus        10 V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      |..+.+||||++.| |+.||.|+++||..+-+++|.++.++++..+..++|++...+
T Consensus       782 iGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~e  838 (984)
T KOG3209|consen  782 IGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPE  838 (984)
T ss_pred             ccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEcChh
Confidence            67899999999999 999999999999999999999999999999999999998654

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=98.75  E-value=1.4e-07  Score=59.94  Aligned_cols=62  Identities=23%  Similarity=0.398  Sum_probs=50.9

Q ss_pred             CCceEEEeeC--------CCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVR--------PHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~--------~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~~~   68 (81)
                      .+|+.|....        .++||..+|++.||.|++|||.++.  ++.++...+.... ..+.+.+.|++...
T Consensus       104 t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V~LtV~R~Ge~~  174 (402)
T TIGR02860       104 TKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIK--NMDDLANLINKAGGEKLTLTIERGGKII  174 (402)
T ss_pred             cCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCeEEEEEEECCEEE
Confidence            5677775542        3589999999999999999999999  8999998887654 68889998887654

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG3580|consensus

Probab=98.70  E-value=9.4e-09  Score=67.76  Aligned_cols=77  Identities=26%  Similarity=0.390  Sum_probs=57.9

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCCcceeeecccccccCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKENDLLQLTSDLIFHDFY   81 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~~   81 (81)
                      +-|+||.+|..|+||.+.||+.||+|+++|.++..++..++....|...+  ..+++...+....+-.+..+.+.++||
T Consensus       428 DVGIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k~Dvyr~iv~s~vGDSFy  506 (1027)
T KOG3580|consen  428 DVGIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSKADVYRDIVASGVGDSFY  506 (1027)
T ss_pred             ceeEEEeecccCCchhhccccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhhhHHHHHHHhccCCceeE
Confidence            45899999999999999999999999999999999998999888887665  455555444433333333444444443

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.68  E-value=1.4e-07  Score=63.19  Aligned_cols=60  Identities=27%  Similarity=0.429  Sum_probs=49.3

Q ss_pred             CCceEEEeeCCCCHHhhC-CCCCCCEEEEEC--CE---EcCCCCHHHHHHHHHcCC-CeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAA-GLVPGDRVVAVN--NQ---TIADLPYAEVVQLIQNSP-AYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~-gl~~gd~i~~in--g~---~~~~~~~~~~~~~l~~~~-~~~~l~v~~~   64 (81)
                      .++++|..|.||+||+++ ||++||.|++||  |.   .+.+++..++...++... ..+.|++.|.
T Consensus       254 ~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        254 DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            456889999999999998 899999999999  43   445677888888887654 5889998873

>KOG3209|consensus

Probab=98.59  E-value=2.6e-07  Score=61.96  Aligned_cols=60  Identities=18%  Similarity=0.352  Sum_probs=52.7

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP   63 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~   63 (81)
                      .+=+++|.++..++||.+.| ++.||+|+.|||.+..+++|..+..++++.+..+.+.+.|
T Consensus       921 ynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vll~Lr~  981 (984)
T KOG3209|consen  921 YNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVLLLLRR  981 (984)
T ss_pred             cccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEEEEecc
Confidence            44569999999999999999 9999999999999999999999999999876666555544

>KOG3580|consensus

Probab=98.55  E-value=2.5e-07  Score=61.30  Aligned_cols=64  Identities=27%  Similarity=0.467  Sum_probs=57.4

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcce
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL   69 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~~   69 (81)
                      ..+||..+...+.|.+.| |+.||.|++|||....+++..+..+++..+.+.+.+.+.|+.+...
T Consensus       219 SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qtL  283 (1027)
T KOG3580|consen  219 SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQTL  283 (1027)
T ss_pred             chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCcee
Confidence            347788888889888887 9999999999999999999999999999998999999999877663

>KOG3549|consensus

Probab=98.52  E-value=3.2e-07  Score=57.31  Aligned_cols=58  Identities=26%  Similarity=0.375  Sum_probs=53.5

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV   62 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~   62 (81)
                      +-+++|+++..+-.|+..| |-.||.|++|||..+..+.++++.++++..++.+++++.
T Consensus        79 n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~  137 (505)
T KOG3549|consen   79 NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLTVK  137 (505)
T ss_pred             CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEEeH
Confidence            4568899999999999999 999999999999999999999999999999998888874

>KOG3606|consensus

Probab=98.52  E-value=5.5e-07  Score=54.58  Aligned_cols=65  Identities=26%  Similarity=0.398  Sum_probs=57.0

Q ss_pred             CCCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           3 EPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         3 ~~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ++.-|++|+.+.||+.|...| |..+|+++.+||+.+.+.+.+++..++-.....+.+++...++.
T Consensus       191 ekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNLIiTVkPANQR  256 (358)
T KOG3606|consen  191 EKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLIITVKPANQR  256 (358)
T ss_pred             cccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccceEEEecccccc
Confidence            455689999999999999999 88999999999999999999999999988778888888754443

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=1.5e-06  Score=54.33  Aligned_cols=63  Identities=25%  Similarity=0.371  Sum_probs=54.4

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~~~   68 (81)
                      ...|++|..+.+++||.++|++.||.|+++||.++.  +..++...+....  ..+.+.+.|+++..
T Consensus       268 ~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~~~r~g~~~  332 (347)
T COG0265         268 VAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALKLLRGGKER  332 (347)
T ss_pred             CCCceEEEecCCCChHHHcCCCCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEEEEECCEEE
Confidence            356799999999999999999999999999999999  8888888776553  58999999986554

>KOG3129|consensus

Probab=98.49  E-value=1.1e-06  Score=51.39  Aligned_cols=61  Identities=21%  Similarity=0.414  Sum_probs=47.8

Q ss_pred             eEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCC-HHHHHHHHHcCC-CeEEEEEEeCCCcc
Q psy5713           8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLP-YAEVVQLIQNSP-AYLHLLVVPKENDL   68 (81)
Q Consensus         8 ~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~-~~~~~~~l~~~~-~~~~l~v~~~~~~~   68 (81)
                      ++|..|.|+|||+.+||+.||.|+.+.+....+.. ...+....+... ..+.+++.|.+...
T Consensus       141 a~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v  203 (231)
T KOG3129|consen  141 AVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKV  203 (231)
T ss_pred             EEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEE
Confidence            57899999999999999999999999988877443 444444444443 68889999988765

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=98.44  E-value=2e-06  Score=47.58  Aligned_cols=62  Identities=26%  Similarity=0.424  Sum_probs=45.7

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCC-CCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCCc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKEND   67 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~-gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~~   67 (81)
                      ...++.|..|.|+|||+.+||.+ .|.|+.+++....  +.+++...+.... .++.+.+......
T Consensus        41 ~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~--~~~~l~~~v~~~~~~~l~L~Vyns~~~  104 (138)
T PF04495_consen   41 EEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLD--DEDDLFELVEANENKPLQLYVYNSKTD  104 (138)
T ss_dssp             CCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE----STCHHHHHHHHTTTS-EEEEEEETTTT
T ss_pred             ccceEEEeEecCCCHHHHCCccccccEEEEccceecC--CHHHHHHHHHHcCCCcEEEEEEECCCC
Confidence            35578899999999999999998 6999999998888  6678888887665 5888888865443

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=98.34  E-value=5.6e-06  Score=42.55  Aligned_cols=60  Identities=27%  Similarity=0.361  Sum_probs=40.6

Q ss_pred             CCceEEEeeCCC--------CHHhhCC--CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPH--------SPAAAAG--LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~--------s~a~~~g--l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~   66 (81)
                      +++..|.++.++        ||....|  ++.||.|++|||+++.  .-.++..+|.... ..+.|++.+.+.
T Consensus        11 ~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~--~~~~~~~lL~~~agk~V~Ltv~~~~~   81 (88)
T PF14685_consen   11 NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVT--ADANPYRLLEGKAGKQVLLTVNRKPG   81 (88)
T ss_dssp             TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-B--TTB-HHHHHHTTTTSEEEEEEE-STT
T ss_pred             CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECC--CCCCHHHHhcccCCCEEEEEEecCCC
Confidence            467788888776        6666766  6699999999999998  5566777776554 689999987664

>KOG1892|consensus

Probab=98.30  E-value=1.4e-06  Score=60.27  Aligned_cols=64  Identities=20%  Similarity=0.338  Sum_probs=58.1

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      .-|++|.+|.+|++|+..| |..||.++++||+..-+.+.+....++.+.+..+++.|...+..+
T Consensus       959 klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKqgAiy 1023 (1629)
T KOG1892|consen  959 KLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQGAIY 1023 (1629)
T ss_pred             ccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEEEehhhhhhHH
Confidence            3489999999999999999 999999999999999999999999999999899999988766544

>KOG3651|consensus

Probab=98.30  E-value=4.1e-06  Score=51.65  Aligned_cols=56  Identities=30%  Similarity=0.405  Sum_probs=50.9

Q ss_pred             ceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713           7 TIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV   62 (81)
Q Consensus         7 ~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~   62 (81)
                      .++|..|..++||.+.| ++.||.|+.|||+.+.+.+--++.+.++...+.+.+.+-
T Consensus        31 ClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~IhyN   87 (429)
T KOG3651|consen   31 CLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIHYN   87 (429)
T ss_pred             eEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEEeh
Confidence            47889999999999999 999999999999999999999999999988788888763

>KOG3551|consensus

Probab=98.26  E-value=1.5e-06  Score=54.90  Aligned_cols=56  Identities=27%  Similarity=0.348  Sum_probs=50.4

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEE
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV   61 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v   61 (81)
                      -++.|+++.+|-.|++.+ |..||.|+++||....+.++++..+.+++.++.+.+.+
T Consensus       110 MPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~lev  166 (506)
T KOG3551|consen  110 MPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLEV  166 (506)
T ss_pred             CceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeeee
Confidence            357889999999999999 99999999999999999999999999999987666655

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=98.25  E-value=5.2e-06  Score=50.58  Aligned_cols=55  Identities=27%  Similarity=0.406  Sum_probs=42.8

Q ss_pred             eeCCC---CHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCCcc
Q psy5713          12 HVRPH---SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKENDL   68 (81)
Q Consensus        12 ~v~~~---s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~~~   68 (81)
                      .+.|+   ..-.++||+.||.+++|||.++.  +..+...++....  ..+.+++.|++...
T Consensus       210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL~--D~~qa~~l~~~L~~~tei~ltVeRdGq~~  269 (276)
T PRK09681        210 AVKPGADRSLFDASGFKEGDIAIALNQQDFT--DPRAMIALMRQLPSMDSIQLTVLRKGARH  269 (276)
T ss_pred             EECCCCcHHHHHHcCCCCCCEEEEeCCeeCC--CHHHHHHHHHHhccCCeEEEEEEECCEEE
Confidence            45565   35677899999999999999999  6676555555433  68999999998765

>KOG3552|consensus

Probab=98.23  E-value=2.8e-06  Score=58.55  Aligned_cols=58  Identities=26%  Similarity=0.541  Sum_probs=52.4

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      .+++|..|.+|+|+.-. |++||+|+.|||.+++...++.+..+++.+...+.|+|.+.
T Consensus        75 rPviVr~VT~GGps~GK-L~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP  132 (1298)
T KOG3552|consen   75 RPVIVRFVTEGGPSIGK-LQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP  132 (1298)
T ss_pred             CceEEEEecCCCCcccc-ccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence            57889999999998743 99999999999999999999999999999988999998863

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=98.14  E-value=1.4e-05  Score=47.77  Aligned_cols=64  Identities=23%  Similarity=0.272  Sum_probs=51.7

Q ss_pred             CCCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCCcc
Q psy5713           3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKENDL   68 (81)
Q Consensus         3 ~~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~~~   68 (81)
                      ++-.|..+.-..+++.-+..||+.||..++||+....  +.+++..+++...  ..+.+++.|+|..-
T Consensus       204 eki~Gyr~~pgkd~slF~~sglq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~qlTv~R~G~rh  269 (275)
T COG3031         204 EKIEGYRFEPGKDGSLFYKSGLQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQLTVIRRGKRH  269 (275)
T ss_pred             CceEEEEecCCCCcchhhhhcCCCcceEEEecCcccC--CHHHHHHHHHhhhcCcceEEEEEecCccc
Confidence            3445666666777888899999999999999999999  7888887776544  68899999988653

>KOG3542|consensus

Probab=98.12  E-value=5e-06  Score=56.13  Aligned_cols=59  Identities=32%  Similarity=0.452  Sum_probs=49.2

Q ss_pred             CCCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713           3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV   62 (81)
Q Consensus         3 ~~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~   62 (81)
                      +...|++|..|.||+.|.+.|++.||+|+.+||+..+..+..-+..+++.. -.+.+++.
T Consensus       559 EkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrnn-thLtltvK  617 (1283)
T KOG3542|consen  559 EKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRNN-THLTLTVK  617 (1283)
T ss_pred             cccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcCC-ceEEEEEe
Confidence            445689999999999999999999999999999999988888888888765 34444443

>KOG3532|consensus

Probab=98.08  E-value=2.5e-05  Score=52.79  Aligned_cols=57  Identities=28%  Similarity=0.366  Sum_probs=49.0

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP   63 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~   63 (81)
                      +.-+.|..|.++++|.++.+.+||.+++|||+|+.  +..++.+.++.....+.+.+++
T Consensus       397 ~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~  453 (1051)
T KOG3532|consen  397 NRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVER  453 (1051)
T ss_pred             ceEEEEEEecCCChhhHhcCCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEee
Confidence            34466889999999999999999999999999999  8899999998876666666554

>KOG3571|consensus

Probab=97.97  E-value=1.8e-05  Score=51.59  Aligned_cols=60  Identities=20%  Similarity=0.437  Sum_probs=51.7

Q ss_pred             CCCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC---CCeEEEEEE
Q psy5713           3 EPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS---PAYLHLLVV   62 (81)
Q Consensus         3 ~~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~---~~~~~l~v~   62 (81)
                      ..++|++|..+.+++.-+.-| +.+||-|++||....++++.+++...|+..   +.++.+++.
T Consensus       274 rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvA  337 (626)
T KOG3571|consen  274 RGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVA  337 (626)
T ss_pred             CCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEe
Confidence            467899999999999888888 999999999999999999999999988753   356777664

>PF12812 PDZ_1: PDZ-like domain

Probab=97.91  E-value=8.4e-05  Score=37.37  Aligned_cols=46  Identities=20%  Similarity=0.257  Sum_probs=38.7

Q ss_pred             eEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC
Q psy5713           8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA   55 (81)
Q Consensus         8 ~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~   55 (81)
                      .++.....++++...++..|..|.+||++++.  +.+++.+.+++.++
T Consensus        32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ipd   77 (78)
T PF12812_consen   32 GVYVAVSGGSLAFAGGISKGFIITSVNGKPTP--DLDDFIKVVKKIPD   77 (78)
T ss_pred             EEEEEecCCChhhhCCCCCCeEEEeECCcCCc--CHHHHHHHHHhCCC
Confidence            45556678888888779999999999999999  89999998887543

>KOG1320|consensus

Probab=97.89  E-value=0.0001  Score=47.99  Aligned_cols=61  Identities=26%  Similarity=0.427  Sum_probs=49.9

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~~~   68 (81)
                      +++.++.|.|++++...++..||+|.++||+++.  +..++...+..+.  +++.+...+..+..
T Consensus       398 q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~--n~~~l~~~i~~~~~~~~v~vl~~~~~e~~  460 (473)
T KOG1320|consen  398 QLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVK--NLKHLYELIEECSTEDKVAVLDRRSAEDA  460 (473)
T ss_pred             eEEEEEEeccCCCcccccccCCCEEEEECCEEee--chHHHHHHHHhcCcCceEEEEEecCccce
Confidence            4688999999999999999999999999999999  7888999888764  36655555544443

>KOG0609|consensus

Probab=97.89  E-value=4.9e-05  Score=49.80  Aligned_cols=58  Identities=22%  Similarity=0.416  Sum_probs=53.7

Q ss_pred             ceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           7 TIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         7 ~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      .++|..+..|+.+.+.| |..||.|+.+||..+.+.+..++..+++...+.+++.+...
T Consensus       147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkiiP~  205 (542)
T KOG0609|consen  147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKIIPS  205 (542)
T ss_pred             ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEccc
Confidence            68899999999999999 99999999999999998899999999999888999888755

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=97.84  E-value=4e-05  Score=50.24  Aligned_cols=34  Identities=41%  Similarity=0.551  Sum_probs=31.0

Q ss_pred             CCCCceEEEeeCCCCHHhhCCCCCCCEEEEECCE
Q psy5713           3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQ   36 (81)
Q Consensus         3 ~~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~   36 (81)
                      ...++.+|..|.++|||..|||.+||+|++|||.
T Consensus       459 ~~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~  492 (558)
T COG3975         459 SEGGHEKITFVFPGGPAYKAGLSPGDKIVAINGI  492 (558)
T ss_pred             ccCCeeEEEecCCCChhHhccCCCccEEEEEcCc
Confidence            3456778999999999999999999999999999

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=97.81  E-value=0.00024  Score=44.16  Aligned_cols=56  Identities=16%  Similarity=0.312  Sum_probs=47.9

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeC
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPK   64 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~   64 (81)
                      .|+++..+..++++... |..||.|.++||.++.  +..++...+...  ++.+++.+.|.
T Consensus       130 ~gvyv~~v~~~~~~~gk-l~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~  187 (342)
T COG3480         130 AGVYVLSVIDNSPFKGK-LEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERH  187 (342)
T ss_pred             eeEEEEEccCCcchhce-eccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEec
Confidence            47888888889888754 9999999999999999  899999988754  37999999863

>KOG1421|consensus

Probab=97.68  E-value=0.00025  Score=48.14  Aligned_cols=61  Identities=25%  Similarity=0.460  Sum_probs=51.5

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~~~   68 (81)
                      .+-++|..|.+++|+.+. |++||.++++|+.-+.  ++.++.+.+... ++.+.|++.|++...
T Consensus       302 tgmLvV~~vL~~gpa~k~-Le~GDillavN~t~l~--df~~l~~iLDegvgk~l~LtI~Rggqel  363 (955)
T KOG1421|consen  302 TGMLVVETVLPEGPAEKK-LEPGDILLAVNSTCLN--DFEALEQILDEGVGKNLELTIQRGGQEL  363 (955)
T ss_pred             ceeEEEEEeccCCchhhc-cCCCcEEEEEcceehH--HHHHHHHHHhhccCceEEEEEEeCCEEE
Confidence            344788999999999986 9999999999988887  788888887654 579999999988755

>KOG0606|consensus

Probab=97.62  E-value=0.00017  Score=50.85  Aligned_cols=54  Identities=31%  Similarity=0.401  Sum_probs=48.3

Q ss_pred             EEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713           9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV   62 (81)
Q Consensus         9 ~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~   62 (81)
                      .|..|.+++||..+|++.+|.|+.+||.++.++.+.++++.+...++.+.+.+.
T Consensus       661 ~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~tt  714 (1205)
T KOG0606|consen  661 SVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLRTT  714 (1205)
T ss_pred             eeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCCeeEEEee
Confidence            477899999999999999999999999999999999999999887776666543

>KOG3605|consensus

Probab=97.28  E-value=0.00079  Score=45.49  Aligned_cols=56  Identities=25%  Similarity=0.477  Sum_probs=44.1

Q ss_pred             eEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC--eEEEEEEe
Q psy5713           8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLHLLVVP   63 (81)
Q Consensus         8 ~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~--~~~l~v~~   63 (81)
                      ++|....+++||.+.| |-.||.|++|||...-++.......+++...+  .+++++.+
T Consensus       675 VViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~  733 (829)
T KOG3605|consen  675 VVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVS  733 (829)
T ss_pred             HHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEec
Confidence            3455678899999999 99999999999999998877777777776542  55555543

>KOG3938|consensus

Probab=97.27  E-value=0.00045  Score=42.14  Aligned_cols=61  Identities=21%  Similarity=0.349  Sum_probs=51.4

Q ss_pred             CCCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEe
Q psy5713           3 EPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVP   63 (81)
Q Consensus         3 ~~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~   63 (81)
                      ...+..+|..+.++|.-++.- ++.||.|-+|||..+-++.|.++.+.|+..+  ...++.+..
T Consensus       146 NG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLie  209 (334)
T KOG3938|consen  146 NGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIE  209 (334)
T ss_pred             CCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeec
Confidence            345668899999999998876 9999999999999999999999999998765  466665553

>KOG3834|consensus

Probab=96.75  E-value=0.0087  Score=38.81  Aligned_cols=62  Identities=23%  Similarity=0.315  Sum_probs=49.0

Q ss_pred             CCCCceEEEeeCCCCHHhhCCCCC-CCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           3 EPMDTIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         3 ~~~~~~~V~~v~~~s~a~~~gl~~-gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      .+..|..|.+|..++++.++|+.+ -|-|++|||..++. +.+.+...++...+.++++++...
T Consensus        12 ggteg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sekVkltv~n~k   74 (462)
T KOG3834|consen   12 GGTEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEKVKLTVYNSK   74 (462)
T ss_pred             CCceeEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccceEEEEEecc
Confidence            456788999999999999999665 88999999999973 455666666666566888887543

>KOG1421|consensus

Probab=96.66  E-value=0.016  Score=39.95  Aligned_cols=51  Identities=16%  Similarity=0.274  Sum_probs=46.3

Q ss_pred             CCCCCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC
Q psy5713           1 MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP   54 (81)
Q Consensus         1 ~~~~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~   54 (81)
                      |++-.+|++|.....||||.+ +|+....|..+||..+.  +.+++...+...+
T Consensus       857 ~edlp~gvyvt~rg~gspalq-~l~aa~fitavng~~t~--~lddf~~~~~~ip  907 (955)
T KOG1421|consen  857 VEDLPEGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDTN--TLDDFYHMLLEIP  907 (955)
T ss_pred             HhccCCceEEeecccCChhHh-hcchheeEEEecccccC--cHHHHHHHHhhCC
Confidence            356678999999999999999 89999999999999999  8999999998765

>KOG1738|consensus

Probab=96.49  E-value=0.0054  Score=41.28  Aligned_cols=58  Identities=24%  Similarity=0.353  Sum_probs=49.0

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV   62 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~   62 (81)
                      ++..+|+.+.+++||+..+ +..||.+++||+..+-+|....+...++....-+.+++.
T Consensus       224 dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lk  282 (638)
T KOG1738|consen  224 DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLK  282 (638)
T ss_pred             CCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeee
Confidence            4556788899999999988 999999999999998889999999988877655666654

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=96.31  E-value=0.05  Score=34.40  Aligned_cols=52  Identities=40%  Similarity=0.687  Sum_probs=42.2

Q ss_pred             EEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-Ce---EEEEEEe
Q psy5713          10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AY---LHLLVVP   63 (81)
Q Consensus        10 V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~---~~l~v~~   63 (81)
                      +..+..++++..++++.||.++++|+.++.  ++.++........ ..   +.+.+.|
T Consensus       133 ~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~i~~~~  188 (375)
T COG0750         133 VGEVAPKSAAALAGLRPGDRIVAVDGEKVA--SWDDVRRLLVAAAGDVFNLLTILVIR  188 (375)
T ss_pred             eeecCCCCHHHHcCCCCCCEEEeECCEEcc--CHHHHHHHHHhccCCcccceEEEEEe
Confidence            346889999999999999999999999999  8888777665433 23   6777777

>KOG3605|consensus

Probab=96.28  E-value=0.0028  Score=43.03  Aligned_cols=53  Identities=25%  Similarity=0.430  Sum_probs=44.5

Q ss_pred             EEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEE
Q psy5713           9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV   61 (81)
Q Consensus         9 ~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v   61 (81)
                      +|..+..|+.|.+.|++.|..|+.|||+.+--..|+-+.++|...-+.+++..
T Consensus       759 iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMKT  811 (829)
T KOG3605|consen  759 IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMKT  811 (829)
T ss_pred             EeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhhc
Confidence            36678899999999999999999999999976789999999877655555543

>KOG2921|consensus

Probab=94.26  E-value=0.13  Score=33.42  Aligned_cols=47  Identities=15%  Similarity=0.284  Sum_probs=38.1

Q ss_pred             CCCceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHc
Q psy5713           4 PMDTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQN   52 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~   52 (81)
                      -..++.|..|...||+..- ||.+||.|.++||-+++  +.+|....++.
T Consensus       218 ~g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~--~v~dW~ecl~t  265 (484)
T KOG2921|consen  218 HGEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVH--KVSDWLECLAT  265 (484)
T ss_pred             cCceEEEEeccccCCCcCcccCCccceEEecCCcccC--CHHHHHHHHHh
Confidence            3568899999998887764 69999999999999999  66666665554

>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised

Probab=92.30  E-value=0.4  Score=28.00  Aligned_cols=31  Identities=23%  Similarity=0.244  Sum_probs=27.3

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEEC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVN   34 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~in   34 (81)
                      .++.+.|..|..||+|.++|+.-++.|.++.
T Consensus       120 e~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~  150 (183)
T PF11874_consen  120 EGGKVIVDEVEFGSPAEKAGIDFDWEITEVE  150 (183)
T ss_pred             eCCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence            4567889999999999999999999998863

This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.

>KOG4407|consensus

Probab=92.08  E-value=0.087  Score=38.95  Aligned_cols=59  Identities=53%  Similarity=0.826  Sum_probs=49.7

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP   63 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~   63 (81)
                      .+.+++..|.+++++.-+.|+.||.++.+|..++.++...+++..+.+....+.+.+..
T Consensus       142 ~eT~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P  200 (1973)
T KOG4407|consen  142 METIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVP  200 (1973)
T ss_pred             hhhhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCceecc
Confidence            34678899999999999999999999999999999888888888888876555555543

>KOG3834|consensus

Probab=89.14  E-value=1.2  Score=29.43  Aligned_cols=51  Identities=31%  Similarity=0.406  Sum_probs=38.6

Q ss_pred             EEeeCCCCHHhhCCCC-CCCEEEEE-CCEEcCCCCHHHHHHHHHcCC-CeEEEEEEe
Q psy5713          10 IKHVRPHSPAAAAGLV-PGDRVVAV-NNQTIADLPYAEVVQLIQNSP-AYLHLLVVP   63 (81)
Q Consensus        10 V~~v~~~s~a~~~gl~-~gd~i~~i-ng~~~~~~~~~~~~~~l~~~~-~~~~l~v~~   63 (81)
                      |..|.+++||..+||+ -.|-|+.+ +.+.-   ..+|+...+.... +.+.+.++.
T Consensus       113 vl~V~p~SPaalAgl~~~~DYivG~~~~~~~---~~eDl~~lIeshe~kpLklyVYN  166 (462)
T KOG3834|consen  113 VLSVEPNSPAALAGLRPYTDYIVGIWDAVMH---EEEDLFTLIESHEGKPLKLYVYN  166 (462)
T ss_pred             eeecCCCCHHHhcccccccceEecchhhhcc---chHHHHHHHHhccCCCcceeEee
Confidence            5688999999999977 68999888 44444   5677777776654 577777764

>KOG4371|consensus

Probab=83.11  E-value=2  Score=31.58  Aligned_cols=60  Identities=23%  Similarity=0.429  Sum_probs=45.0

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP   63 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~   63 (81)
                      ..+++++..+..++.|...| ++.||.+...+|.++.++........+.-.-+.+.+++.+
T Consensus      1268 ~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~ 1328 (1332)
T KOG4371|consen 1268 MSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTR 1328 (1332)
T ss_pred             cCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehh
Confidence            45678888888888888777 9999999999999999887766555554333555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	81
2yuy_A	126	Solution Structure Of Pdz Domain Of Rho Gtpase Acti		1e-13
1gq4_A	90	Structural Determinants Of The Nherf Interaction Wi		1e-06
2ocs_A	88	The Crystal Structure Of The First Pdz Domain Of Hu		3e-06
1gq5_A	91	Structural Determinants Of The Nherf Interaction Wi		7e-06
1g9o_A	91	First Pdz Domain Of The Human Na+H+ EXCHANGER REGUL		7e-06
2d90_A	102	Solution Structure Of The Third Pdz Domain Of Pdz D		8e-06
1i92_A	91	Structural Basis Of The Nherf Pdz1-Cftr Interaction		8e-06
2jxo_A	98	Structure Of The Second Pdz Domain Of Nherf-1 Lengt		8e-06
2he4_A	90	The Crystal Structure Of The Second Pdz Domain Of H		1e-05
2v90_A	96	Crystal Structure Of The 3rd Pdz Domain Of Intestin		1e-05
3r68_A	95	Molecular Analysis Of The Pdz3 Domain Of Pdzk1 Leng		1e-05
1uew_A	114	Solution Structure Of The Forth Pdz Domain Of Human		2e-05
2kjd_A	128	Solution Structure Of Extended Pdz2 Domain From Nhe		2e-05
2vsp_A	91	Crystal Structure Of The Fourth Pdz Domain Of Pdz D		2e-05
2krg_A	216	Solution Structure Of Human Sodium HYDROGEN EXCHANG		2e-05
3r69_A	89	Molecular Analysis Of The Interaction Of The Hdl-Re		2e-05
3tmh_A	87	Crystal Structure Of Dual-Specific A-Kinase Anchori		3e-05
2ozf_A	92	The Crystal Structure Of The 2nd Pdz Domain Of The		3e-05
2eej_A	96	Solution Structure Of Fourth Pdz Domain Of Pdz Doma		3e-05
2dls_A	93	Solution Structure Of The Pdz Domain Of Human Rho G		4e-05
3ngh_A	106	Molecular Analysis Of The Interaction Of The Hdl Re		5e-05
2edz_A	114	Solution Structures Of The Pdz Domain Of Mus Muscul		5e-05
4f8k_A	109	Molecular Analysis Of The Interaction Between The P		5e-05
2iwq_A	123	7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz		1e-04
2fcf_A	103	The Crystal Structure Of The 7th Pdz Domain Of Mpdz		1e-04
2kbs_A	92	Solution Structure Of Harmonin Pdz2 In Complex With		2e-04
2egk_A	101	Crystal Structure Of Tamalin Pdz-Intrinsic Ligand F		2e-04
2pnt_A	98	Crystal Structure Of The Pdz Domain Of Human Grasp		2e-04
2ego_A	96	Crystal Structure Of Tamalin Pdz Domain Length = 96		2e-04
1x5n_A	114	Solution Structure Of The Second Pdz Domain Of Harm		3e-04
2eei_A	106	Solution Structure Of Second Pdz Domain Of Pdz Doma		3e-04
2daz_A	124	Solution Structure Of The 7th Pdz Domain Of Inad-Li		4e-04
2kqf_A	96	Solution Structure Of Mast205-Pdz Complexed With Th		8e-04

>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating Protein 21 Length = 126

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 3   EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
           EPMDTIF+K V+   PA  AGL  GDR++ VN +++    Y++V+ LIQNS   L L V+
Sbjct: 58  EPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVM 117
Query: 63  PKEN 66
           PK++
Sbjct: 118 PKDS 121

>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With Beta2ar And Pdgfr Length = 90

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL 68
          +I+ V P SPA  AGL+ GDR+V VN + +    + +VV  I+ +   + LLVV  END 
Sbjct: 29 YIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPENDS 88
Query: 69 L 69
          L
Sbjct: 89 L 89

>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human Nherf-2 (slc9a3r2) Length = 88

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
          FI+ V P SPA AA L  GDR+V VN   +    + +VVQ I+       LLVV +E+
Sbjct: 28 FIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGETHHQVVQRIKAVEGQTRLLVVDQED 85

>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With Beta2- Ar And Pdgfr Length = 91

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
          +I+ V P SPA  AGL+ GDR+V VN + +    + +VV  I+ +   + LLVV  E D
Sbjct: 30 YIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPEED 88

>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY Factor Length = 91

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
          +I+ V P SPA  AGL+ GDR+V VN + +    + +VV  I+ +   + LLVV  E D
Sbjct: 30 YIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD 88

>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain Containing Protein 1 Length = 102

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
           IK + P SPA AAGL   D VVAVN +++  L +  VV++I+       LLV+ KE
Sbjct: 33 IIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKE 89

>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction Length = 91

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
          +I+ V P SPA  AGL+ GDR+V VN + +    + +VV  I+ +   + LLVV  E D
Sbjct: 30 YIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPEQD 88

>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1 Length = 98

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
          FI+ V P SPA A+GL   DR+V VN   +    + +VV  I+       LLVV +E D
Sbjct: 36 FIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94

>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding Motif Length = 90

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 2  DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          D+     +I+ V P SPAA +GL   DR++ VN Q +  L +AEVV  I+       LLV
Sbjct: 24 DKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 83
Query: 62 V 62
          V
Sbjct: 84 V 84

>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And Kidney-enriched Pdz Domain Ikepp (pdzd3) Length = 96

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
          F+  V P  PA  AG+  GDR+VAV  +++  L + E V  IQ   + + L VV  E D
Sbjct: 33 FLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEAD 91

>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1 Length = 95

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
           IK + P SPA AAGL   D VVAVN +++  L +  VV++I+       LLV+ KE
Sbjct: 32 IIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKE 88

>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein) Length = 114

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 17  SPA-AAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
           SPA   A L  GDR++AVN Q+I ++P+A++V+LI+++   + L ++P+E
Sbjct: 54  SPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQE 103

>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1 (150- 270) Length = 128

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
          FI+ V P SPA A+GL   DR+V VN   +    + +VV  I+       LLVV +E D
Sbjct: 36 FIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94

>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain- Containing Protein 1 Length = 91

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
          FIK V+   PA  AGL   D ++ VN   + D PY +VV  IQ+S   + LLV  K+
Sbjct: 30 FIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKK 86

>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE Regulatory Factor 1(150-358) Length = 216

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
          FI+ V P SPA A+GL   DR+V VN   +    + +VV  I+       LLVV +E D
Sbjct: 36 FIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94

>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1 Length = 89

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
           IK + P SPA AAGL   D VVAVN +++  L +  VV++I+       LLV+ K+
Sbjct: 29 IIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKQ 85

>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring Protein 2 In Complex With Camp-Dependent Protein Kinase A Type Ii Alpha And Pdzk1 Length = 87

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
          FIK V+   PA  AGL   D ++ VN   + D PY +VV  IQ+S   + LLV  K+
Sbjct: 30 FIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKK 86

>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human Nherf-1 (Slc9a3r1) Length = 92

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
          FI+ V P SPA A+GL   DR+V VN   +    + +VV  I+       LLVV +E +
Sbjct: 31 FIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETE 89

>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain Containing Protein 1 Length = 96

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
          FIK V+   PA  AGL   D ++ VN   + D PY +VV  IQ+S   + LLV  K++
Sbjct: 34 FIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKS 91

>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine Nucleotide Exchange Factor 11 Length = 93

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
          + ++ VRP   A  AG+  GDR++ VN   + +  + EVV+LI+ S AY+ L
Sbjct: 31 VLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVAL 81

>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor Sr-Bi With The Adaptor Protein Pdzk1 Length = 106

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 1  MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
          +++  D   I+ +   SPA  AGL+ GDRV+ +N   +    +A+VV+L++ S   + LL
Sbjct: 21 IEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL 80
Query: 61 VV 62
          V+
Sbjct: 81 VL 82

>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz Domain-Containing Protein 1 Length = 114

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 1  MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
          +++  D   I+ +   SPA  AGL+ GDRV+ +N   +    +A+VV+L++ S   + LL
Sbjct: 33 IEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL 92
Query: 61 VV 62
          V+
Sbjct: 93 VL 94

>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The Prostacyclin Receptor And The First Pdz Domain Of Pdzk1 Length = 109

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 1  MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
          +++  D   I+ +   SPA  AGL+ GDRV+ +N   +    +A+VV+L++ S   + LL
Sbjct: 22 IEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL 81
Query: 61 VV 62
          V+
Sbjct: 82 VL 83

>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz Length = 123

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 3   EPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS 53
           E M  IFIKHV   SPA   G L PGDR+V V+   + D  + + V+ I+ +
Sbjct: 56  EVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA 107

>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz (Mupp-1) Length = 103

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 3  EPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS 53
          E M  IFIKHV   SPA   G L PGDR+V V+   + D  + + V+ I+ +
Sbjct: 36 EVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA 87

>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The Carboxyl Tail Peptide Of Cadherin23 Length = 92

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
          IFI HV+P S +A  GL  GD++V VN    ++L + E V ++++S +    +V     +
Sbjct: 29 IFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRE 88
Query: 68 LL 69
          L 
Sbjct: 89 LF 90

>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion Protein Length = 101

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
          F+  V   SPA  AGL PGD + +VN   +  + + E+V +I+ S   L L
Sbjct: 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRL 90

>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1) In Complex With The C-Terminal Peptide Of The Metabotropic Glutamate Receptor Type 1 Length = 98

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
          F+  V   SPA  AGL PGD + +VN   +  + + E+V +I+ S   L L
Sbjct: 40 FVCRVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRL 90

>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain Length = 96

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
          F+  V   SPA  AGL PGD + +VN   +  + + E+V +I+ S   L L
Sbjct: 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRL 90

>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin Protein Length = 114

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
           IFI HV+P S +A  GL  GD++V VN    ++L + E V ++++S +    +V     +
Sbjct: 43  IFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRE 102
Query: 68  LL 69
           L 
Sbjct: 103 LF 104

>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain Containing Protein 1 Length = 106

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
          +++  + P   A  AG++  D ++ VN + + D  + EVV+ ++ S + +  L+V KE D
Sbjct: 34 VYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETD 93

>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like Protein Length = 124

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 2   DEPMDTIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
           D    +IF+  + P  PAAA G +  GD ++ +NNQ +    +     +I+ +P+ + L+
Sbjct: 47  DRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLV 106
Query: 61  VVPKENDLLQLTS 73
            +  E+ + Q+ S
Sbjct: 107 FIRNEDAVNQMAS 119

>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The C-Terminus Of A Rabies Virus G Protein Length = 96

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
           + HV    PA+ AGL  GD +  VN + +  L + EVV+LI  S   + +   P EN
Sbjct: 39 MVWHVEDGGPASEAGLRQGDLITHVNGEPVHGLVHTEVVELILKSGNKVAISTTPLEN 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	81
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	5e-23
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	9e-22
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	4e-21
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	4e-21
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	7e-21
2d90_A	102	PDZ domain containing protein 1; structural genomi	1e-20
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	2e-20
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	5e-20
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	7e-20
3khf_A	99	Microtubule-associated serine/threonine-protein ki	1e-19
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	1e-19
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	1e-19
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	1e-19
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	6e-19
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	2e-18
2ego_A	96	General receptor for phosphoinositides 1- associat	2e-18
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	5e-18
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	7e-18
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	8e-18
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	1e-17
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	1e-17
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	2e-17
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	1e-16
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	1e-16
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	2e-16
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	3e-16
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	4e-16
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	7e-16
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	9e-16
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	1e-15
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	1e-15
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	1e-15
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	2e-15
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	2e-15
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	2e-15
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	3e-15
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	7e-15
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	1e-14
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	2e-14
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	2e-14
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	3e-14
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	3e-14
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	3e-14
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	3e-14
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	3e-14
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	4e-14
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	1e-12
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	4e-14
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	5e-14
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	6e-14
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	6e-14
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	9e-14
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	1e-13
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	1e-13
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	1e-13
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	1e-13
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	2e-13
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	2e-13
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	2e-11
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	2e-13
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	2e-13
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	2e-13
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	4e-13
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	2e-13
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	3e-13
2opg_A	98	Multiple PDZ domain protein; structural protein, s	3e-13
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	3e-13
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	3e-13
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	4e-13
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	4e-13
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	5e-13
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	4e-13
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	4e-13
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	5e-13
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	5e-13
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	6e-13
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	5e-10
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	7e-13
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	7e-13
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	8e-13
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	8e-13
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	9e-13
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	9e-13
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	9e-13
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	1e-12
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-12
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	1e-12
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	1e-12
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	1e-12
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	2e-12
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	2e-12
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	2e-12
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	3e-12
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	3e-12
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	3e-12
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	3e-12
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	4e-12
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	4e-12
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	4e-12
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	4e-12
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	4e-12
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	5e-12
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	6e-12
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	7e-12
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	7e-12
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	7e-12
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	7e-12
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	7e-12
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	8e-12
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	8e-12
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	8e-12
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	8e-07
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	9e-12
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	9e-12
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	9e-12
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-11
2awx_A	105	Synapse associated protein 97; membrane protein, s	1e-11
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	1e-11
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	1e-11
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	1e-11
2fne_A	117	Multiple PDZ domain protein; structural protein, s	2e-11
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	2e-11
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	2e-11
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	2e-11
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	2e-11
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	3e-11
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	3e-11
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	4e-11
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	4e-11
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	4e-11
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	4e-11
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	5e-11
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	5e-11
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	5e-11
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	6e-11
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	6e-11
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	6e-11
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	9e-11
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	9e-11
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	1e-10
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	1e-10
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	1e-10
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	1e-10
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	1e-10
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	2e-10
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-10
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-08
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-04
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	2e-10
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	2e-10
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	2e-10
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	3e-10
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	4e-10
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	5e-10
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	1e-09
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	1e-09
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	1e-09
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	1e-09
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	5e-09
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	1e-08
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	2e-08
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	2e-08
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	4e-08
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	2e-05
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	4e-08
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	5e-08
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	6e-08
3k50_A	403	Putative S41 protease; structural genomics, joint	6e-08
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	8e-08
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	8e-08
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	1e-05
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	1e-07
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	1e-06
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	8e-07
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	1e-06
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	2e-06
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	2e-06
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	2e-06
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	2e-06
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	4e-06
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	5e-06
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	1e-05
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	1e-05
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	3e-05
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	3e-05
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	1e-04
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	3e-05
2kl1_A	94	YLBL protein; structure genomics, structural genom	5e-05
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	5e-05
4fgm_A	597	Aminopeptidase N family protein; structural genomi	5e-05
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	1e-04
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	3e-04

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 84.2 bits (208), Expect = 5e-23
 Identities = 31/67 (46%), Positives = 44/67 (65%)

Query: 1   MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
             EPMDTIF+K V+   PA  AGL  GDR++ VN +++    Y++V+ LIQNS   L L 
Sbjct: 56  RLEPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELS 115

Query: 61  VVPKEND 67
           V+PK++ 
Sbjct: 116 VMPKDSG 122

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 79.6 bits (197), Expect = 9e-22
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          D+     +I+ V P SPAA +GL   DR++ VN Q +  L +AEVV  I+       LLV
Sbjct: 24 DKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 83

Query: 62 VPKENDL 68
          V     L
Sbjct: 84 VGPSTRL 90

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 78.5 bits (194), Expect = 4e-21
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
           F+  V P  PA  AG+  GDR+VAV  +++  L + E V  IQ   + + L VV  E D
Sbjct: 32 QFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEAD 91

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 78.1 bits (193), Expect = 4e-21
 Identities = 24/60 (40%), Positives = 32/60 (53%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
           FIK V+   PA  AGL   D ++ VN   + D PY +VV  IQ+S   + LLV  K+  
Sbjct: 29 SFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKAQ 88

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 77.0 bits (190), Expect = 1e-20
 Identities = 26/66 (39%), Positives = 37/66 (56%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
            IK + P SPA AAGL   D VVAVN +++  L +  VV++I+       LLV+ KE +
Sbjct: 32 QIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAE 91

Query: 68 LLQLTS 73
           +   S
Sbjct: 92 SIYSLS 97

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 76.5 bits (189), Expect = 2e-20
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          ++     +I+ V P SPA  AGL+ GDR+V VN + +    + +VV  I+ +   + LLV
Sbjct: 23 EKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLV 82

Query: 62 VPKEND 67
          V  E D
Sbjct: 83 VDPETD 88

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 75.4 bits (186), Expect = 5e-20
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
            IK + P SPA AAGL   D VVAVN +++  L +  VV++I+       LLV+ KE +
Sbjct: 31 QIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKELE 90

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 75.6 bits (186), Expect = 7e-20
 Identities = 21/66 (31%), Positives = 38/66 (57%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          ++  D   I+ +   SPA  AGL+ GDRV+ +N   +    +A+VV+L++ S   + LLV
Sbjct: 34 EKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 93

Query: 62 VPKEND 67
          +  ++ 
Sbjct: 94 LDGDSY 99

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 74.7 bits (184), Expect = 1e-19
 Identities = 19/66 (28%), Positives = 30/66 (45%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          D       +  V   SPA  AGL  GD +  +N +++  L + +VV+L+  S   + L  
Sbjct: 30 DVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRT 89

Query: 62 VPKEND 67
             EN 
Sbjct: 90 TALENT 95

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 74.8 bits (184), Expect = 1e-19
 Identities = 21/66 (31%), Positives = 38/66 (57%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          ++  D   I+ +   SPA  AGL+ GDRV+ +N   +    +A+VV+L++ S   + LLV
Sbjct: 22 EKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 81

Query: 62 VPKEND 67
          +  ++ 
Sbjct: 82 LDGDSY 87

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 74.7 bits (184), Expect = 1e-19
 Identities = 17/60 (28%), Positives = 34/60 (56%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
          +++  + P   A  AG++  D ++ VN + + D  + EVV+ ++ S + +  L+V KE D
Sbjct: 34 VYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETD 93

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 74.7 bits (184), Expect = 1e-19
 Identities = 25/66 (37%), Positives = 34/66 (51%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          D+     FI+ V P SPA A+GL   DR+V VN   +    + +VV  I+       LLV
Sbjct: 29 DKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV 88

Query: 62 VPKEND 67
          V +E D
Sbjct: 89 VDRETD 94

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 73.3 bits (180), Expect = 6e-19
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
                   I  ++  SPA  AGL  GD +  +N  +     Y +VV LI++S   L +  
Sbjct: 44  CSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103

Query: 62  V 62
           +
Sbjct: 104 L 104

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 74.4 bits (182), Expect = 2e-18
 Identities = 25/66 (37%), Positives = 34/66 (51%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          D+     FI+ V P SPA A+GL   DR+V VN   +    + +VV  I+       LLV
Sbjct: 29 DKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV 88

Query: 62 VPKEND 67
          V +E D
Sbjct: 89 VDRETD 94

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 71.3 bits (175), Expect = 2e-18
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
           F+  V   SPA  AGL PGD + +VN   +  + + E+V +I+ S   L L  + 
Sbjct: 39 TFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 71.4 bits (175), Expect = 5e-18
 Identities = 25/66 (37%), Positives = 34/66 (51%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          D+     FI+ V P SPA A+GL   DR+V VN   +    + +VV  I+       LLV
Sbjct: 29 DKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV 88

Query: 62 VPKEND 67
          V +E D
Sbjct: 89 VDRETD 94

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 69.6 bits (171), Expect = 7e-18
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
            +  V   SPA   GL  GD+++AVN   +    + +VV+LI      LH+++  
Sbjct: 25 CVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE 80

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 70.1 bits (172), Expect = 8e-18
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
          + ++ V    PA  AGL   D V+ +N + +      E+   I++ P+ + LLV    
Sbjct: 38 VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVS 95

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 69.9 bits (171), Expect = 1e-17
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 1   MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
                   +++ V     A  AGL  GD ++ VN Q +  + + +VV +I+     L + 
Sbjct: 40  TPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 99

Query: 61  VVP 63
           VV 
Sbjct: 100 VVM 102

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 70.4 bits (172), Expect = 1e-17
 Identities = 16/67 (23%), Positives = 28/67 (41%)

Query: 1   MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
                   +++ V     A  AGL  GD ++ VN Q +  + + +VV +I+     L + 
Sbjct: 60  TPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 119

Query: 61  VVPKEND 67
           VV     
Sbjct: 120 VVMVTRH 126

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 68.5 bits (168), Expect = 2e-17
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          +++K++RP  P    GL P DR++ VN+    D     VV LI  S   L L++
Sbjct: 34 VYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVI 87

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 67.1 bits (164), Expect = 1e-16
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IF+  V   SPA  + L   D ++A+NN   +     E  + +  +    HL++
Sbjct: 30 IFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVM 83

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 66.9 bits (164), Expect = 1e-16
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          + I  V   S AA A L PGD + A+N ++   + + E    I+    +L L V
Sbjct: 34 LTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSV 87

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 66.2 bits (162), Expect = 2e-16
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          + ++ V    PA  AGL   D V+ +N + +      E+   I++ P+ + LLV 
Sbjct: 26 VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVW 80

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 66.2 bits (162), Expect = 3e-16
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          + I  + P S AAAA L PGD ++A++      + +A+    I+ +   L L +
Sbjct: 31 LVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKI 84

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 65.4 bits (160), Expect = 4e-16
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          I +  V     A AA L PGD +VA+N Q+  ++ +AE    I+ S + L L +
Sbjct: 32 IIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQL 85

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 64.6 bits (158), Expect = 7e-16
 Identities = 10/54 (18%), Positives = 24/54 (44%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          + I  ++    AA A +  GD V++++      + + E    I+     L++ +
Sbjct: 29 LTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTL 82

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 64.6 bits (158), Expect = 9e-16
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          + I  + P   AA AG+  GD V++++ +    L + E    I+     L L +
Sbjct: 29 LSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGL 82

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 64.3 bits (157), Expect = 1e-15
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
          + ++ VRP   A  AG+  GDR++ VN   + +  + EVV+LI++   Y+ L ++   
Sbjct: 31 VLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGA-YVALTLLGSS 87

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 64.3 bits (157), Expect = 1e-15
 Identities = 9/54 (16%), Positives = 25/54 (46%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          + I  ++    A+ A +  GD V++++  +   + + E    I+     L++ +
Sbjct: 31 LTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTL 84

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 63.8 bits (156), Expect = 1e-15
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          I +  V     A  A L PGD +VA+N ++   + +AE    I+ SP+ L L +
Sbjct: 28 IMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQL 81

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 63.4 bits (155), Expect = 2e-15
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          + I  + P S AA + L  GD VVA++      + + E    I+++   L L +
Sbjct: 27 LTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL 80

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 64.4 bits (157), Expect = 2e-15
 Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
                   I  +   SPA     L  GDR++AVN Q+I ++P+A++V+LI+++   + L 
Sbjct: 39  STITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLR 98

Query: 61  VVPKEN 66
           ++P+E 
Sbjct: 99  IIPQEE 104

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 63.5 bits (155), Expect = 2e-15
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64
          I  +   S AA  GL+    +  +N Q +  L  +++  ++  S   + + ++P 
Sbjct: 27 ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA 81

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 64.1 bits (156), Expect = 3e-15
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVV 62
          + +  + PH  A+ AG   GD +V++       L  +EV++L+++     + + VV
Sbjct: 38 VQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV 93

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 62.4 bits (152), Expect = 7e-15
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          + I  V P S AA A L  GD + A++ +  +++ + E    I+     L L V
Sbjct: 29 LAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTV 82

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 62.1 bits (151), Expect = 1e-14
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
           IFI HV+P S +A  GL  GD++V VN    ++L + E V ++++S + L + +V     
Sbjct: 43  IFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-LTISIVAAAGR 101

Query: 68  LLQLTSD 74
            L +T  
Sbjct: 102 ELFMTDR 108

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 61.6 bits (150), Expect = 2e-14
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           IFI  V    PAA AG+  GD+++ VN   +    + E V+ ++ +   + + V
Sbjct: 48  IFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 60.9 bits (148), Expect = 2e-14
 Identities = 12/55 (21%), Positives = 28/55 (50%)

Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
           I  +     A   G+  G R++ +N Q++   P+ ++V ++ N+   +H+  +P
Sbjct: 34 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP 88

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 60.8 bits (148), Expect = 3e-14
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          + +  V     A    L PGD+++ +NN+   DL +   V +++ +   L + VV
Sbjct: 33 LTVVAVTAGGSAHG-KLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVV 86

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 61.2 bits (149), Expect = 3e-14
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IFI  V P S A  AGL  GD+V+AVN+    D+ +++ V++++ +   + + V
Sbjct: 43 IFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAR-EISMRV 95

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 61.1 bits (149), Expect = 3e-14
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 2  DEPMDT-IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
          D   DT + ++ +    PA   G L  GD V+ +N ++   L +A+ V+ I+     LHL
Sbjct: 33 DVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHL 92

Query: 60 LV 61
          ++
Sbjct: 93 VI 94

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 60.8 bits (148), Expect = 3e-14
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IF+  V   S A  AGL  GD++  VN  ++        V+++ +S   LH++V
Sbjct: 38 IFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTSSS-RLHMMV 90

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 61.8 bits (150), Expect = 3e-14
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
           I+I  V P S A  +GL  GD+++ VN ++  ++ + E V+L+++S  +L L V 
Sbjct: 48  IYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSR-HLILTVK 101

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 62.8 bits (153), Expect = 4e-14
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           + I  VRP  PA   G + PGDR+++V+   +    +AE + +++       LL+
Sbjct: 137 VVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLI 191

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 58.6 bits (142), Expect = 1e-12
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
            + ++R    AA +  L  GD + AVN   +A   + E++ L++N    + L V  +  
Sbjct: 35 PRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELP 94

Query: 67 D 67
           
Sbjct: 95 P 95

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 60.9 bits (148), Expect = 4e-14
 Identities = 12/58 (20%), Positives = 22/58 (37%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
           I++  V   S A  AGL  GD+++  N   +      +   +I      + +L     
Sbjct: 44  IYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNP 101

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 60.4 bits (147), Expect = 5e-14
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IFI  V    PAA AG+  GD+++ VN   +    + E V+ ++ +   + + V
Sbjct: 36 IFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 89

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 61.0 bits (148), Expect = 6e-14
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
           IF+  V   SPAA  GL  GD+++ VNN    ++   E V  + + P    + ++
Sbjct: 53  IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL 107

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 60.9 bits (148), Expect = 6e-14
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
           D    +IF+  + P  PAAA G +  GD ++ +NNQ +    +     +I+ +P+ + L+
Sbjct: 47  DRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLV 106

Query: 61  VVPKENDLLQLTS 73
            +  E+ + Q+ S
Sbjct: 107 FIRNEDAVNQMAS 119

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 59.2 bits (144), Expect = 9e-14
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IF+K +   S AA  G +  GD V+ +N     ++   +   LI+ S   L ++V
Sbjct: 23 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVV 77

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 59.6 bits (145), Expect = 1e-13
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
          IFIK + P SPA   G L  GDR++++N + + +     V+ LI+ +   + L +   +
Sbjct: 39 IFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQTFD 97

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 60.0 bits (145), Expect = 1e-13
 Identities = 11/70 (15%), Positives = 31/70 (44%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           ++ +  +++  V+    A+  GL  GD ++ +NN+    L  + +   +      L +  
Sbjct: 40  EDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRT 99

Query: 62  VPKENDLLQL 71
            P+  + ++ 
Sbjct: 100 YPELEEGVES 109

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 59.4 bits (144), Expect = 1e-13
 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVV 62
           + +  + P+  A+ AG   GD +V++       L  +EV++L+++     + + VV
Sbjct: 46  VQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVV 101

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 59.9 bits (145), Expect = 1e-13
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
             I ++   SPA   G L  GDRV+A+N     D  + E  QL+++S     + + 
Sbjct: 47  PLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLE 102

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 59.3 bits (144), Expect = 2e-13
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          ++I+ + P SPAAA G L  GDR++ VN  ++  L Y   V LI++    +  LV
Sbjct: 38 LYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLV 92

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 60.6 bits (147), Expect = 2e-13
 Identities = 13/57 (22%), Positives = 31/57 (54%)

Query: 6  DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          + IF++ V+ +SPA+  GL  GD+V+ +N +  A     +  ++++ +      + +
Sbjct: 27 NGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 83

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 55.2 bits (133), Expect = 2e-11
 Identities = 10/52 (19%), Positives = 24/52 (46%)

Query: 12  HVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
            +   S AA  GL+    +  +N Q +  L  +++  ++  S   + + ++P
Sbjct: 113 SIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP 164

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 58.9 bits (143), Expect = 2e-13
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          I++  V P S A   GL  GD+++ VN++++A + +AE V+ ++ S   L L V 
Sbjct: 37 IYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSK-KLVLSVY 90

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 58.6 bits (142), Expect = 2e-13
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IF+K +   S AA  G +  GD V+ +N     ++   +   LI+ S   L ++V
Sbjct: 25 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVV 79

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 60.5 bits (147), Expect = 2e-13
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           I++  +     A   G L  GD+++AVN+  + D+ + + V  ++N+   ++L V
Sbjct: 132 IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 186

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 60.1 bits (146), Expect = 4e-13
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          IFI  + P   AA  G L   D ++ VN   + ++ ++  V+ ++ + + + L V+
Sbjct: 37 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM 92

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 58.5 bits (142), Expect = 2e-13
 Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
          +  MD +++  +    PA   G +  GD+++ +N ++  D+ +A  ++LI++    + LL
Sbjct: 33 EYKMD-LYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLL 91

Query: 61 V 61
          +
Sbjct: 92 L 92

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 59.1 bits (143), Expect = 3e-13
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 6   DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLHLLV 61
             + I H+     AA+ G L PGD +++V +  +      E ++L+QN      L +  
Sbjct: 49  PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKA 107

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 58.1 bits (141), Expect = 3e-13
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
          D  +  I I  V     A   G L  GD+++ VN   +    + E + +++ +P  + L 
Sbjct: 26 DTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLT 85

Query: 61 V 61
          +
Sbjct: 86 L 86

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 58.6 bits (142), Expect = 3e-13
 Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
                 I I  ++P S    +G L PGD +++++  ++      E  +L+ +    + L 
Sbjct: 38  LRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLE 97

Query: 61  VVPKENDLLQLTS 73
           ++P       L  
Sbjct: 98  ILPVPQSQRPLRP 110

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 58.1 bits (141), Expect = 3e-13
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLHLLVVPKE 65
            +K +       + GL  GD +V VN + +  L + +VV ++  SP    + LLV  + 
Sbjct: 29 QRVKQIVD--SPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT 86

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 59.0 bits (143), Expect = 4e-13
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
           I++K V P S A   G +   D++VAV+   I      +VV++++N+   +HL +V ++
Sbjct: 48  IYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRK 106

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 60.2 bits (146), Expect = 4e-13
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
          +       I ++   SPA   G L  GDRV+A+N     D  + E  QL+++S     + 
Sbjct: 32 ETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVT 91

Query: 61 VV 62
          + 
Sbjct: 92 LE 93

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 59.8 bits (145), Expect = 5e-13
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
           + I  ++  S A   G L  GD+++A++N  +      + VQ++Q     + L +   E+
Sbjct: 137 LVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDED 196

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 58.6 bits (142), Expect = 4e-13
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
            +I  + P   A   G L+ G +V+  N   +    Y EV  +I        + V    N
Sbjct: 51  AYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLN 110

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 58.0 bits (141), Expect = 4e-13
 Identities = 11/55 (20%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IF+K +   S     G +  GD+++AV+   +      + V++++++   + L +
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 89

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 58.2 bits (141), Expect = 5e-13
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
          D P++ I I  V     AA  G L  GD+++ VN   + +  + E +  ++ +P  + L+
Sbjct: 39 DTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLV 98

Query: 61 V 61
          V
Sbjct: 99 V 99

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 57.8 bits (140), Expect = 5e-13
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
             + T  I ++    PA  +G L  GDR+ A+N  ++  LP A     ++ + +   + 
Sbjct: 33 GSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVT 92

Query: 61 VV 62
          + 
Sbjct: 93 LS 94

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 61.1 bits (147), Expect = 6e-13
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
             I  +     A   G+  G R++ +N Q++    + ++VQ + NS   +H+  +P   
Sbjct: 317 GIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAM 375

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 52.7 bits (125), Expect = 5e-10
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
              + T+ + ++    PAA +G L  GD+++++N  ++  LP A    +I+       + 
Sbjct: 228 GSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVK 287

Query: 61  VV 62
           + 
Sbjct: 288 LN 289

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 57.3 bits (139), Expect = 7e-13
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
          +EP D I I  +     A   G +  GDR++A+N+ ++   P +E + L+Q +   + L 
Sbjct: 26 EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK 85

Query: 61 VVPKE 65
          +  + 
Sbjct: 86 IKKQT 90

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 57.7 bits (140), Expect = 7e-13
 Identities = 15/55 (27%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           I++K + P S AA  G + P D+++ V++  +  +  ++VV++++N+   + LL+
Sbjct: 46  IYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLL 100

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 57.2 bits (139), Expect = 8e-13
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          + I  VRP  PA   G + PGDR+++V+   +    +AE + +++       LL+
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLI 88

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 57.8 bits (140), Expect = 8e-13
 Identities = 10/62 (16%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
          D     I +  V P+  A+  G +  G+ V+++N +++    + + + +++ +      +
Sbjct: 38 DLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAV 97

Query: 61 VV 62
          +V
Sbjct: 98 IV 99

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 57.4 bits (139), Expect = 9e-13
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
           IFI  V P   A   G L  G R++ VN Q++  L + E VQL+++    L +LV 
Sbjct: 46  IFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVC 101

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 56.9 bits (138), Expect = 9e-13
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IF+K +     A   G L  GD ++ +N     ++   +  +LI+ S   L L+V
Sbjct: 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVV 77

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 57.4 bits (139), Expect = 9e-13
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          I++K V P   A + G +  GDRV+AVN  ++    + + V+ ++N+   +HLL+
Sbjct: 44 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 98

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 56.8 bits (138), Expect = 1e-12
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          I++K V P   A + G +  GDRV+AVN  ++    + + V+ ++N+   +HLL+
Sbjct: 35 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 89

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 57.4 bits (139), Expect = 1e-12
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
           IFI  + P   AA    L  GDR+V +   +   + + + V L++N+   + + VV   +
Sbjct: 55  IFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGD 114

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 57.0 bits (138), Expect = 1e-12
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64
          I I  + P  PA   G L  GD ++AVN   + D  + E V ++      +   VV  
Sbjct: 37 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYV 94

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 57.0 bits (138), Expect = 1e-12
 Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           +++  +    PA  +G +  GD ++ +N +T  ++ ++  ++LI+N    + L +
Sbjct: 51  LYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFL 105

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 57.1 bits (138), Expect = 1e-12
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
           IFIK V   SPA     L  GD+++ V+   + +  ++E V+ I+N+   +  +V 
Sbjct: 52  IFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQ 107

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 56.6 bits (137), Expect = 2e-12
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          IF+  +    PAA  G L   DR++ VN + ++   + + V+  + +   + + V+
Sbjct: 43 IFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVL 98

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 55.8 bits (135), Expect = 2e-12
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          I I  +     A     L  GD +++VN + ++   + E VQ ++ +   + L V
Sbjct: 32 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 56.6 bits (137), Expect = 2e-12
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL-LVVPKE 65
           I++K++ P   A   G L  GDR++ VN   +      EVV L++++     + L+V ++
Sbjct: 60  IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119

Query: 66  ND 67
            D
Sbjct: 120 ED 121

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 56.2 bits (136), Expect = 3e-12
 Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IF+K V     A   G +   D++V V+  ++  +       +++N+   +  ++
Sbjct: 42 IFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVI 96

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 56.3 bits (136), Expect = 3e-12
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           I++  ++ +  AA  G L  GD++++VN Q + +L + + V L +N+   + L V
Sbjct: 49  IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 103

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 55.8 bits (135), Expect = 3e-12
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL- 59
          DEP   I I  V     A   G L PGD +V V+   +A   +  V+ L+ ++     + 
Sbjct: 30 DEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVN 89

Query: 60 LVVPKE 65
          L V ++
Sbjct: 90 LTVRRK 95

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 55.8 bits (135), Expect = 3e-12
 Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
           + ++ + P   A   G L  GD ++ +    +  +   +V Q+++N    + +LV     
Sbjct: 40  VVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPA 99

Query: 67  DLLQLTS 73
             + +TS
Sbjct: 100 GDISVTS 106

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 55.8 bits (135), Expect = 4e-12
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IFIKHV   SPA   G L PGDR+V V+   + D  + + V+ I+ +   +  +V
Sbjct: 41 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 55.9 bits (135), Expect = 4e-12
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV-PKE 65
           I++  V P    +  G +  GD ++ V+   + ++  +E V L++ + + + L  +  KE
Sbjct: 55  IYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKE 114

Query: 66  NDLL 69
             ++
Sbjct: 115 GSIV 118

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 55.8 bits (135), Expect = 4e-12
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IF+  +     A  AG L  GDRV+++N   + +  +   V L+  +   + LL+
Sbjct: 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLL 94

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 55.8 bits (135), Expect = 4e-12
 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IFI  +    PA  +G L  GD++++VN   + +  + +    ++N+   + ++ 
Sbjct: 37 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA 91

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 55.8 bits (135), Expect = 4e-12
 Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IF+  +    PA  +G L  GDR+++VN   + +  + +    ++ +   + ++ 
Sbjct: 41 IFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVA 95

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 55.0 bits (133), Expect = 5e-12
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          I+I  +     A   G L  GDR++AVNN  + D+ + E V  ++N+   ++L V
Sbjct: 35 IYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKV 89

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 55.0 bits (133), Expect = 6e-12
 Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
            I  +           L  GD +   N   +  LP+     L + +   + + V 
Sbjct: 33 CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVT 88

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 54.6 bits (132), Expect = 7e-12
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLH 58
          DEP + + IK +    PAA  G +  GD +V+VN+  +    +A+VV++ Q+ P    + 
Sbjct: 21 DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVD 80

Query: 59 LLV 61
          L +
Sbjct: 81 LEL 83

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 55.5 bits (134), Expect = 7e-12
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
          D P+  + +  V     A   G +V GD ++A+N + + D   AE    +Q +       
Sbjct: 39 DSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDW 98

Query: 61 V 61
          +
Sbjct: 99 I 99

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 55.0 bits (133), Expect = 7e-12
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          I++  ++ +  AA  G L  GD++++VN Q + +L + + V L +N+   + L V
Sbjct: 39 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 55.1 bits (133), Expect = 7e-12
 Identities = 12/74 (16%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV---- 62
           IF+K V     A   G +   D +V V+  ++  +  +    +++N+   +  ++     
Sbjct: 37  IFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERP 96

Query: 63  PKENDLLQLTSDLI 76
            +++++ QL    +
Sbjct: 97  GEQSEVAQLIQQTL 110

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 55.5 bits (134), Expect = 7e-12
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLH 58
           DEP + + +K V P  PAA  G +  GD +V +N   +    +A+VV+L Q+ P    ++
Sbjct: 40  DEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVN 99

Query: 59  LLV 61
           L++
Sbjct: 100 LVL 102

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 54.6 bits (132), Expect = 8e-12
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          +FI  +     AA  G L   DRV+A+N   +         Q+IQ S   ++L +
Sbjct: 31 VFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTI 85

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 55.8 bits (134), Expect = 8e-12
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
           I++  V    PA  AGL  GD+++ VN   +  + + +  + +      +  L+V ++
Sbjct: 66  IYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 123

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 56.8 bits (137), Expect = 8e-12
 Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
             I  +           L  GD +   N   +  LP+     L + +   + + V 
Sbjct: 138 CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVT 193

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 43.3 bits (102), Expect = 8e-07
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 1   MDEPMDT-IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTI--ADLPYAEVVQLIQNSPAY 56
            +  + T   I HV P    AA   L   D +  +N   I    +   +V QL   +   
Sbjct: 39  KNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEK 98

Query: 57  LHLLVVPKEND 67
              L V + + 
Sbjct: 99  AVTLTVFRADP 109

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 56.5 bits (136), Expect = 9e-12
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           +FI H+     A + GL  GD +V +N  +I+   + EV+ LI+     + + V
Sbjct: 112 LFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTEKT-VSIKV 164

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 55.0 bits (133), Expect = 9e-12
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL-LVVPKE 65
           I++K++ P   A   G L  GDR++ VN   +A     EVV L++++     + L+V ++
Sbjct: 41  IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQ 100

Query: 66  ND 67
            +
Sbjct: 101 EE 102

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 54.7 bits (132), Expect = 9e-12
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
           I I+ +     A  +G L+PGDR+V+VN   + +   AE V++++  P  L  L +
Sbjct: 46  IVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGI 101

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 55.2 bits (133), Expect = 1e-11
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           IFIKHV   SPA   G L PGDR+V V+   + D  + + V+ I+ +   +  +V
Sbjct: 61  IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 54.7 bits (132), Expect = 1e-11
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
           I++  +     A   G L  GD+++AVN+ ++ ++ + E V  ++N+  +++L V  K  
Sbjct: 35  IYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVA-KPT 93

Query: 67  DLLQLTSDLIFH 78
            +         H
Sbjct: 94  SMYISRHHHHHH 105

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 54.7 bits (132), Expect = 1e-11
 Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
            I  +           L  GD +   N   +  LP+     L + +   + + V 
Sbjct: 27 CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVT 82

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 54.8 bits (132), Expect = 1e-11
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
           I I  + P  PA   G L  GD ++AVN   + D  + E V ++      +   VV
Sbjct: 55  ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 54.7 bits (132), Expect = 1e-11
 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IFI  +    PA  +G L  GD++++VN   + +  + +    ++N+   + ++ 
Sbjct: 40 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA 94

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 54.3 bits (131), Expect = 2e-11
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
           I++K V     A+  G L  GD+++AVN Q++  + + E V +++ +   + L+V+
Sbjct: 55  IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVL 110

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 54.5 bits (131), Expect = 2e-11
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8  IFIKHVRPHSPAAAA--GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          + +  V P +PA      L  GD+VV +N + IA+  + +VV  I+ S       ++
Sbjct: 43 VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELM 99

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 53.8 bits (130), Expect = 2e-11
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          I+I  V P   A   G L  GD++++VN  ++    + + V+L++ +   + L+V 
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVR 87

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 53.6 bits (129), Expect = 2e-11
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 8  IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL---LVVP 63
           FIK ++      +   +  GD + ++N + I    + +V + ++           L+ P
Sbjct: 30 AFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEP 89

Query: 64 KE 65
          K+
Sbjct: 90 KK 91

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 54.4 bits (131), Expect = 2e-11
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIA-DLPYAEVVQLIQNSPAYLHLLVV 62
           IF+K V+P S A     L   D+++A+N+  +  ++ + + + L+Q +   L L+V 
Sbjct: 56  IFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVA 112

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 53.1 bits (128), Expect = 3e-11
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 1  MDEPMDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
           DE    I +  +     A  +GL+  GD +  VN   + D    E++Q++  S   +  
Sbjct: 23 KDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITF 82

Query: 60 LVVPKEND 67
           ++P   +
Sbjct: 83 KIIPGSKE 90

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 53.5 bits (129), Expect = 3e-11
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          I I  V    PA    L   DRV  VN  ++ ++ +A  VQ ++ S     + +
Sbjct: 41 IVISDVLKGGPAEG-QLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITI 93

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 53.6 bits (129), Expect = 4e-11
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL-LVVPKE 65
            FI  V+  S A   G L PGD V+  N + +    + EV  +I  S     + LVV + 
Sbjct: 67  AFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS 126

Query: 66  N 66
            
Sbjct: 127 G 127

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 53.3 bits (128), Expect = 4e-11
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8   IFIKHVRPHSPAAAA--GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
           + +  V P +PA      L  GD+VV +N + IA+  + +VV  I+ S       ++
Sbjct: 45  VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELM 101

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 53.3 bits (128), Expect = 4e-11
 Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          + I  +     A  +G +  GD ++AVN++ + DL Y   +++++   +  H++++
Sbjct: 28 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI 83

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 52.7 bits (127), Expect = 4e-11
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          + +  +     AA +  +  GD +V +N   +      E + LI+ S   L L+V
Sbjct: 37 LTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRILKLIV 90

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 53.1 bits (128), Expect = 5e-11
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           I++  +     A   G L  GDR++ VNN ++ ++ + E V +++N+   ++L V
Sbjct: 56  IYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKV 110

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 52.7 bits (127), Expect = 5e-11
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IFI  + P   AA  G L   D V+ VN   ++++ ++  V+ ++ +   + L+V
Sbjct: 36 IFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVV 90

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 53.3 bits (128), Expect = 5e-11
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLH 58
           DEP + + IK +    PAA  G +  GD +V+VN+  +    +A+VV++ Q+ P    + 
Sbjct: 39  DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVD 98

Query: 59  LLV 61
           L +
Sbjct: 99  LEL 101

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 52.7 bits (127), Expect = 6e-11
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          I++K V     A   G L  GD++++V+ +++  L      +L+  + + + L V
Sbjct: 40 IYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEV 94

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 52.8 bits (127), Expect = 6e-11
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           I I  V P  PA    L   DRVV VN   + D+ ++  VQ ++ S     ++V
Sbjct: 48  IVISDVLPGGPADG-LLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVV 100

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 52.3 bits (126), Expect = 6e-11
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL- 59
          +EP + I+I H+ P   A   G L  GD +++V+   +    +  VVQL+Q +    H+ 
Sbjct: 23 NEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVN 82

Query: 60 LVV 62
          L V
Sbjct: 83 LTV 85

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 52.0 bits (125), Expect = 9e-11
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
          +       I  ++    A   G L  G  ++ VN  T+    + E  ++I  +       
Sbjct: 28 NTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRD 87

Query: 61 VV 62
           +
Sbjct: 88 YI 89

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 52.5 bits (126), Expect = 9e-11
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           ++I  V  ++PAA  G +  GD +  VN ++I      EV ++IQ     + +  
Sbjct: 52  LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 106

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 52.5 bits (126), Expect = 1e-10
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
            E +  IFI  + P   A + GL+   D V+ VN   ++     +V  ++  +   L + 
Sbjct: 61  LEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIIT 120

Query: 61  VVP 63
           V P
Sbjct: 121 VRP 123

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 52.1 bits (125), Expect = 1e-10
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 3   EPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
             MD++ I  +     A  +G L  GD V+ +N   I      EV  L+ +    L  ++
Sbjct: 45  NEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVL 104

Query: 62  VPKEN 66
           +P   
Sbjct: 105 IPSSG 109

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A Length = 91

 Score = 51.3 bits (123), Expect = 1e-10
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 4  PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
          P++ + +++V+P+S A+ AGL  GDR+V V+ Q +    +   V L++++P     L + 
Sbjct: 3  PIEPV-LENVQPNSAASXAGLQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIE 59

Query: 64 KENDLLQLT 72
          ++   L LT
Sbjct: 60 RQGSPLSLT 68

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 52.5 bits (126), Expect = 1e-10
 Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
           + I  +   + +  +  + PGD ++ +    +  L   E   +I+  P     +V+ +++
Sbjct: 59  LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKS 118

Query: 67  DLLQLTS 73
              + T+
Sbjct: 119 LQSKETT 125

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 51.6 bits (124), Expect = 1e-10
 Identities = 7/61 (11%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 6  DTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64
           +  +  +         G +  GD ++ +N   + +    ++ + ++ +   + L V+P 
Sbjct: 36 QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPN 95

Query: 65 E 65
          +
Sbjct: 96 Q 96

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 53.0 bits (127), Expect = 2e-10
 Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           IF+K V     A   G +   D +V V+  ++  +  +    +++N+   +  ++
Sbjct: 113 IFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMI 167

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 54.1 bits (129), Expect = 2e-10
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
           IFI  + P   AA  G L   D ++ VN   + ++ ++  V+ ++ + + + L V+ ++ 
Sbjct: 91  IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP 150

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 48.7 bits (115), Expect = 2e-08
 Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 8   IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
           IFI  +    PA  +G +  GD++++VN   + +  + +    ++N+   + ++   K  
Sbjct: 333 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 392

Query: 67  D 67
           +
Sbjct: 393 E 393

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 37.6 bits (86), Expect = 1e-04
 Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 1   MDEPMDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
                ++I++  +     A   G +  GD+++AVN+  + D+ + + V  ++N+   ++L
Sbjct: 179 HIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYL 238

Query: 60  L 60
            
Sbjct: 239 K 239

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 51.7 bits (124), Expect = 2e-10
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           ++I  V  ++PAA  G +  GD +  VN ++I      EV ++IQ     + +  
Sbjct: 47  LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 101

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 51.8 bits (124), Expect = 2e-10
 Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          + I  +     A  +G +  GD ++AVN++ + DL Y   +++++   +  H++++
Sbjct: 35 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI 90

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 50.7 bits (122), Expect = 2e-10
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          +F+  +     A A G L+ GD+++ VN + + +     V  L++ S   + L V
Sbjct: 31 VFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEV 85

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 51.3 bits (123), Expect = 3e-10
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS 53
          ++I  V P       G L PGD++V++N +++  + + E   +I  +
Sbjct: 43 VYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRA 89

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 50.4 bits (120), Expect = 4e-10
 Identities = 11/62 (17%), Positives = 27/62 (43%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          ++ +  +++  V+    A+  GL  GD ++ +NN+    L  + +   +      L +  
Sbjct: 31 EDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRT 90

Query: 62 VP 63
           P
Sbjct: 91 YP 92

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 50.1 bits (120), Expect = 5e-10
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IF+  V+P  PA+   L PGD+++  N  +  ++ + + V L++     + L++
Sbjct: 45 IFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII 97

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 49.3 bits (118), Expect = 1e-09
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IF+  V+P  PA+   L PGD+++  N  +  ++ + + V L++     + L++
Sbjct: 37 IFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII 89

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 49.3 bits (118), Expect = 1e-09
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLHLLV 61
            +K +         GL  GD +V +N Q + +L + EVV ++++ P      L++
Sbjct: 34 QRVKQILD--IQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLII 87

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 49.8 bits (119), Expect = 1e-09
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL------L 60
           IFIK +     A   G L   D+++AVN +T+      E ++ ++ S +          L
Sbjct: 57  IFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQL 116

Query: 61  VVPKEND 67
           V+ + + 
Sbjct: 117 VILRRSG 123

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 49.3 bits (118), Expect = 1e-09
 Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIAD-LPYAEVVQLIQNSPAYLHLLV 61
           IF++ ++  S A   G L   D+++A+N Q +   + + + + ++Q +   + L++
Sbjct: 51  IFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVI 106

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 47.3 bits (113), Expect = 5e-09
 Identities = 7/59 (11%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 6  DTIFIKHVRPHSPAA-AAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
          +   +  +           L  GD +  +N  ++A+    ++ ++++     +   +VP
Sbjct: 25 NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP 83

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 47.0 bits (112), Expect = 1e-08
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 2  DEPMDT-IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQN---SPAY 56
          +E  D  I+I  +      AA G + PGD ++ VN+    ++   + V+++++    P  
Sbjct: 28 NERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGP 87

Query: 57 LHLLVV 62
          + L V 
Sbjct: 88 IVLTVA 93

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 46.4 bits (110), Expect = 2e-08
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 17 SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLV 61
                GL  GD +  + +Q + +L + +VV++++  P  A + LL+
Sbjct: 43 DSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLI 89

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 46.4 bits (110), Expect = 2e-08
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 2   DEPMDT-IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
           D+  D  I+I  + P+S AA  G +  GDR++ +N   + +   A  + L         L
Sbjct: 43  DDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVAL-LTSEENKNFSL 101

Query: 60  LVV 62
           L+ 
Sbjct: 102 LIA 104

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 47.3 bits (113), Expect = 4e-08
 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           + + +V+  +PAA  GL  GD ++  N Q + ++  AE+ +++ + P+ L L +
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLALNI 436

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 9   FIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPY 43
           F+  V P+S AA AG+  GD + ++N + I   A L  
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRA 326

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 47.5 bits (112), Expect = 4e-08
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64
          IF+  V   SPAA  GL  GD+++ VNN    ++   E V  + + P    + ++ +
Sbjct: 33 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQ 89

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 47.0 bits (111), Expect = 5e-08
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
           I I  +     A     L  GD +++VN + ++   + E VQ ++ +   + L
Sbjct: 105 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVL 157

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 46.8 bits (110), Expect = 6e-08
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
          IF+  V   SPAA  GL  GD+++ VNN    ++   E V  + + P    + ++ ++ 
Sbjct: 25 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKK 83

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Length = 403

 Score = 46.7 bits (111), Expect = 6e-08
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 1   MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55
            ++      I +V P SPA  AGL  G  ++ +N   I     +E++Q       
Sbjct: 85  DNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVESELLQGSTRQLQ 139

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 44.4 bits (105), Expect = 8e-08
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 6  DTIFIKHVRPHSPAA-AAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
            + I  +      A    L  GD +  VN Q +   P   + +L++N+   + L ++ 
Sbjct: 29 GELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDP-RALQELLRNASGSVILKILS 86

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 46.5 bits (111), Expect = 8e-08
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 10  IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           I  V   SPAA AGL   D ++ VN   +  +  AE+ +++   PA + L +
Sbjct: 367 IDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQI 416

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 39.9 bits (94), Expect = 1e-05
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 9   FIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPY 43
           F+  V P S +A AG+  GD + ++N + +   A+L  
Sbjct: 266 FVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRS 303

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 10  IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           +     +S    AG+ PGD +++ N + + D+    +  + Q     L + V
Sbjct: 390 VVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQEKKKELLVQV 439

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 1   MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPY 43
             E      +  V P+SPA  AGL  GD +  +N+  I     +  
Sbjct: 277 YPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKT 322

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Length = 113

 Score = 42.3 bits (100), Expect = 8e-07
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN 52
          + I  V   SPA  AGL PGD ++A+  Q + +    +V + ++ 
Sbjct: 37 VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT 79

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 42.1 bits (98), Expect = 1e-06
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 7   TIFIKHVRPH--SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           T+ +K V     SP     + PGDR++ +N   +  L   EV   I+ +   L LL+
Sbjct: 45  TVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLI 101

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 42.6 bits (99), Expect = 2e-06
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          IF+  V+P  PA+   L PGD+++  N  +  ++ + + V L++     + L++V
Sbjct: 26 IFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 79

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A Length = 95

 Score = 41.1 bits (96), Expect = 2e-06
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIAD 40
          +  +  +S AA A + PG  + AV+     D
Sbjct: 6  VGEIAANSIAAEAQIAPGTELKAVDGIETPD 36

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens} Length = 112

 Score = 41.1 bits (97), Expect = 2e-06
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS 53
          I+++ V P+SP+   G+  GD +V VN + + D   +E+ + +   
Sbjct: 37 IYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAVLTE 80

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A Length = 388

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 17  SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQ 51
            PA  AG   GD +V V+   +  +   +V  L+Q
Sbjct: 110 GPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQ 144

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Length = 324

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 9   FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIAD 40
            I  V     AA AG+  G  V  V+++ I  
Sbjct: 245 KIVEVVAGGAAANAGVPKGVVVTKVDDRPINS 276

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Length = 318

 Score = 41.4 bits (98), Expect = 5e-06
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIAD 40
           I +  V P  PAA AG+   D +++V+N+    
Sbjct: 246 IVVNEVSPDGPAANAGIQVNDLIISVDNKPAIS 278

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPYA 44
           + I  V   SPA  AGL PGD ++A+  Q +    D+  A
Sbjct: 258 VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEA 297

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPYA 44
            +I  V P +PA A GL   D ++++N Q++    D+   
Sbjct: 256 AYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDV 295

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5 Length = 105

 Score = 38.0 bits (88), Expect = 3e-05
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
          +   +      + GL  GD  VA+N   + D     +  L Q+  
Sbjct: 41 VSPGKDPVLFESIGLQDGDMAVALNGLDLTD--PNVMNTLFQSMN 83

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} Length = 209

 Score = 39.3 bits (91), Expect = 3e-05
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 1   MDEPMDTIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
                +   +  V  +SPAA AGL P  D ++  +           +++  +  P  L L
Sbjct: 107 DGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKP--LKL 164

Query: 60  LVVPKEND 67
            V   + D
Sbjct: 165 YVYNTDTD 172

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} Length = 209

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 10 IKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSP 54
          +  V+ +SP   AGL P  D +V++N   +       +  L++ + 
Sbjct: 20 VLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDT-LKDLLKANV 64

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Length = 345

 Score = 39.1 bits (92), Expect = 3e-05
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 9   FIKHVRPHSPAAAAGLVPGDRVVAVNNQTI---ADLPY 43
           F+  V P S +A AG+  GD + ++N + +   A+L  
Sbjct: 266 FVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRS 303

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans} Length = 94

 Score = 37.3 bits (87), Expect = 5e-05
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55
          +++  V P+ PAA   L  GDR+ A++ Q I      ++V  ++   A
Sbjct: 7  VYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINT--SEQIVSYVREKQA 51

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5 Length = 87

 Score = 37.1 bits (86), Expect = 5e-05
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55
          +   +      + GL  GD  VA+N   + D     +  L Q+   
Sbjct: 23 VSPGKDPVLFESIGLQDGDMAVALNGLDLTD--PNVMNTLFQSMNE 66

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Length = 597

 Score = 38.5 bits (88), Expect = 5e-05
 Identities = 8/48 (16%), Positives = 21/48 (43%)

Query: 1   MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQ 48
                  + + +V     A  AGL  GD+++A+++    +     +++
Sbjct: 491 YKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRILE 538

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis} Length = 91

 Score = 36.1 bits (84), Expect = 1e-04
 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55
          I+   V  + PA    +  GD++++ + +        +++  I +  A
Sbjct: 3  IYASSVVENMPAKG-KIEVGDKIISADGKNYQS--AEKLIDYISSKKA 47

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Length = 125

 Score = 35.6 bits (82), Expect = 3e-04
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55
          + I  V P SPA+   L PG  + ++N    ++L        ++    
Sbjct: 27 VQIDSVVPGSPASKV-LTPGLVIESINGMPTSNL--TTYSAALKTISV 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	81
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.62
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.62
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.61
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.61
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.6
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.6
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.6
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.6
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.59
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.59
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.59
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.59
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.59
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.58
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.58
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.58
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.58
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.58
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.58
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.58
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.58
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.57
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.57
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.57
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.57
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.57
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.56
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.56
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.56
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.56
2ego_A	96	General receptor for phosphoinositides 1- associat	99.56
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.56
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.56
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.56
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.56
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.56
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.56
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.56
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.56
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.56
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.55
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.55
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.55
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.55
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.55
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.55
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.55
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.55
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.55
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.55
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.55
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.54
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.54
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.54
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.54
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.54
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.54
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.54
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.54
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.54
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.53
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.53
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.53
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.53
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.53
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.53
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.53
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.53
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.52
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.52
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.52
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.52
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.52
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.52
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.52
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.52
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.52
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.52
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.52
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.51
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.51
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.51
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.51
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.51
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.51
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.51
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.51
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.51
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.51
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.51
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.51
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.5
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.5
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.5
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.5
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.5
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.5
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.5
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.5
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.5
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.49
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.49
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.49
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.49
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.49
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.49
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.49
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.48
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.48
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.48
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.47
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.47
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.47
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.47
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.47
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.46
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.46
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	99.46
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.46
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.46
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.46
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.45
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.45
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	99.45
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	99.45
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.45
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.44
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.44
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.44
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.44
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.44
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.44
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.43
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.43
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.43
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.43
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	99.43
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.43
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.43
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.42
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.41
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.41
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	99.41
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.4
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.4
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	99.4
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	99.4
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	99.4
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.4
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.4
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.39
2kl1_A	94	YLBL protein; structure genomics, structural genom	99.39
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.39
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.38
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.38
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.38
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.38
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.37
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.37
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.37
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.35
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.35
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	99.35
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.34
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.33
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.32
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.32
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.32
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.31
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.31
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	99.31
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	99.29
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	99.28
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.28
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.27
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	99.27
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	99.26
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.26
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.89
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.22
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.19
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	99.19
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.17
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.17
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.16
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	99.13
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.13
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.13
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.12
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.04
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.01
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	99.0
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.98
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.88
3k50_A	403	Putative S41 protease; structural genomics, joint	98.88
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.85
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.85
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.76
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	98.63
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	98.5
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.48

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.62  E-value=1.4e-14  Score=73.71  Aligned_cols=63  Identities=38%  Similarity=0.488  Sum_probs=57.1

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.+++||+++||++||.|++|||.++.++++.++...++..+..+.+++.|.+..
T Consensus        27 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~   89 (90)
T 2he4_A           27 RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR   89 (90)
T ss_dssp             SSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEEECCCCC
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEccCCC
Confidence            358999999999999999999999999999999998888999999988778999999987653

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.62  E-value=1.1e-14  Score=74.89  Aligned_cols=64  Identities=36%  Similarity=0.464  Sum_probs=57.8

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.++|||+++||++||.|++|||.++.++++.++...+...+..+.+++.|++...
T Consensus        29 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~   92 (96)
T 2v90_A           29 RPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEADR   92 (96)
T ss_dssp             CEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECCCTTS
T ss_pred             CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEECCCCcc
Confidence            3479999999999999999999999999999999977799999999887789999999987654

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.61  E-value=8e-15  Score=74.46  Aligned_cols=63  Identities=22%  Similarity=0.267  Sum_probs=56.4

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.+++||+++||++||.|++|||+++.++++.++...+...+..+.+++.|++..
T Consensus        26 ~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   88 (89)
T 2q3g_A           26 NVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAITS   88 (89)
T ss_dssp             TEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEEEEEECCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeCCCC
Confidence            457899999999999999999999999999999998889999988887778899999887653

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.61  E-value=1.8e-14  Score=72.90  Aligned_cols=61  Identities=30%  Similarity=0.396  Sum_probs=55.9

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      .+++|..|.++|||+++||++||.|++|||.++.++++.++...++..+..+.+++.|++.
T Consensus        26 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~   86 (87)
T 2pa1_A           26 TPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRITS   86 (87)
T ss_dssp             EEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEEECCC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEecCC
Confidence            5789999999999999999999999999999999777999999998877889999998763

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.60  E-value=1.9e-14  Score=73.39  Aligned_cols=64  Identities=23%  Similarity=0.329  Sum_probs=55.7

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.+++||+++||+.||.|++|||.++.++++.++...+...+..+.+++.|++...
T Consensus        23 ~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~   86 (91)
T 2f5y_A           23 DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVPQV   86 (91)
T ss_dssp             SSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEECC---
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCCC
Confidence            3568999999999999999999999999999999988899999999877678999999977654

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.60  E-value=2.2e-14  Score=72.66  Aligned_cols=62  Identities=16%  Similarity=0.216  Sum_probs=55.5

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.+++||+++||++||.|++|||.++.++++.++...+...+..+.+++.|++.
T Consensus        26 ~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~   87 (88)
T 2uzc_A           26 NMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRESD   87 (88)
T ss_dssp             TEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCC
T ss_pred             CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCC
Confidence            45789999999999999999999999999999999888889998888777799999988653

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.60  E-value=2.6e-14  Score=72.80  Aligned_cols=62  Identities=27%  Similarity=0.386  Sum_probs=56.6

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      .+++|..|.++|||+++||++||.|++|||.++.++++.++...+...+..+.+++.|++..
T Consensus        27 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~~   88 (91)
T 2pkt_A           27 QPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSEHE   88 (91)
T ss_dssp             EEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEECCC
T ss_pred             CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcc
Confidence            57899999999999999999999999999999998888899999988668999999997764

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.60  E-value=2.8e-14  Score=73.24  Aligned_cols=64  Identities=25%  Similarity=0.256  Sum_probs=57.6

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.++|||+++| |++||.|++|||.++.+.++.++...+...+..+.+++.|++...
T Consensus        28 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~   92 (95)
T 2vwr_A           28 EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGKPE   92 (95)
T ss_dssp             SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEEESCSC
T ss_pred             CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEcCCcCc
Confidence            4589999999999999999 999999999999999988899988888877789999999876543

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.59  E-value=1.7e-14  Score=74.22  Aligned_cols=63  Identities=25%  Similarity=0.451  Sum_probs=57.3

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.+++||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++..
T Consensus        31 ~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~   94 (97)
T 2jil_A           31 SRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYDVSE   94 (97)
T ss_dssp             CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEEEECCC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Confidence            5689999999999999999 99999999999999997779999999988668999999987654

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.59  E-value=4.5e-14  Score=73.92  Aligned_cols=64  Identities=23%  Similarity=0.406  Sum_probs=58.3

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.+++||+++| |++||.|++|||.++.++++.++...++..+..+.+++.|++...
T Consensus        31 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~   95 (106)
T 4amh_A           31 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAKPGSGE   95 (106)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEEEECCSSSC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCCC
Confidence            4589999999999999999 999999999999999988999999999888789999999987543

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.59  E-value=3.5e-14  Score=73.14  Aligned_cols=64  Identities=23%  Similarity=0.422  Sum_probs=57.4

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.+++||+++| |++||.|++|||.++.++++.++...++..+..+.+++.|++...
T Consensus        29 ~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~~   93 (97)
T 1n7e_A           29 FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ   93 (97)
T ss_dssp             TSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCCCC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCCC
Confidence            3689999999999999999 999999999999999988899999999866679999999876553

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.59  E-value=1.4e-14  Score=72.90  Aligned_cols=61  Identities=25%  Similarity=0.289  Sum_probs=54.5

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ..+++|..|.++|||+++||++||.|++|||.++.++++.++...+...+..+.+++.|++
T Consensus        24 ~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~   84 (85)
T 1rgw_A           24 NMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK   84 (85)
T ss_dssp             TSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEESCC
T ss_pred             CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            3478999999999999999999999999999999988889999888776678899988865

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.59  E-value=5.5e-14  Score=73.87  Aligned_cols=64  Identities=25%  Similarity=0.381  Sum_probs=57.5

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ...+++|..|.+++||+++||++||.|++|||+++.+.++.++...+...+..+.|++.|++..
T Consensus        44 ~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~  107 (110)
T 1x5q_A           44 DDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGP  107 (110)
T ss_dssp             TCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEECSSC
T ss_pred             CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhCCCCeEEEEEEECCcc
Confidence            4678999999999999999999999999999999998878888888877668999999998754

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.58  E-value=2.4e-14  Score=72.76  Aligned_cols=63  Identities=11%  Similarity=0.275  Sum_probs=56.5

Q ss_pred             CCceEEEeeCCCCHHhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAA-AGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~-~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.+++||++ +||++||.|++|||.++.++++.++...++..+..+.+++.|.+..
T Consensus        24 ~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~   87 (88)
T 1kwa_A           24 LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE   87 (88)
T ss_dssp             GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEEECCCCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEECCcCC
Confidence            45799999999999999 7899999999999999999999999999988767888888886543

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.58  E-value=4.3e-14  Score=72.33  Aligned_cols=61  Identities=30%  Similarity=0.432  Sum_probs=55.3

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ..+++|..|.+++||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++
T Consensus        32 ~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~g   93 (94)
T 2fe5_A           32 DNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG   93 (94)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEEEECCC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCC
Confidence            4589999999999999999 999999999999999988889999888877778999998865

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.58  E-value=5.4e-14  Score=72.22  Aligned_cols=62  Identities=29%  Similarity=0.496  Sum_probs=56.6

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.++|||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++.
T Consensus        32 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~   94 (96)
T 1d5g_A           32 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS   94 (96)
T ss_dssp             SSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEECCSC
T ss_pred             cCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCCC
Confidence            4689999999999999999 9999999999999999889999999998877899999988654

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.58  E-value=6.9e-14  Score=72.07  Aligned_cols=63  Identities=22%  Similarity=0.400  Sum_probs=57.6

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      .+++|..|.+++||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++...
T Consensus        30 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~   93 (98)
T 2opg_A           30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPY   93 (98)
T ss_dssp             CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEECSSCC
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCCCCC
Confidence            589999999999999999 999999999999999988899999988877789999999987654

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.58  E-value=1.3e-14  Score=74.04  Aligned_cols=63  Identities=38%  Similarity=0.526  Sum_probs=53.9

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.++|||+++||++||.|++|||.++.++++.++...+...+..+.+++.|++..
T Consensus        26 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~   88 (91)
T 2vsp_A           26 LPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKAQ   88 (91)
T ss_dssp             CSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEEEEC----
T ss_pred             CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeCCcc
Confidence            457899999999999999999999999999999998899999999987777999999987654

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.58  E-value=3e-14  Score=73.45  Aligned_cols=61  Identities=30%  Similarity=0.496  Sum_probs=55.2

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ..+++|..|.++|||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++
T Consensus        36 ~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g   97 (98)
T 1ihj_A           36 TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQTFD   97 (98)
T ss_dssp             EEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC-
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCC
Confidence            3489999999999999999 999999999999999988889999999887789999999875

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.58  E-value=6.2e-14  Score=72.07  Aligned_cols=64  Identities=25%  Similarity=0.389  Sum_probs=56.4

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ...+++|..|.+++||+++||++||.|++|||.++.+++..+....+...+..+.+++.|++..
T Consensus        32 ~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~   95 (97)
T 2w4f_A           32 DDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERET   95 (97)
T ss_dssp             TBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEECCSSC
T ss_pred             CCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEEEEeCCcc
Confidence            4578999999999999999999999999999999998777777777766678999999998754

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.58  E-value=4.7e-14  Score=73.22  Aligned_cols=64  Identities=23%  Similarity=0.341  Sum_probs=58.1

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.+++||+++| |++||.|++|||.++.+.++.++...++..+..+.+++.|++...
T Consensus        33 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~   97 (102)
T 2i1n_A           33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRRQPPP   97 (102)
T ss_dssp             CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEEEECCCC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCCC
Confidence            5689999999999999999 999999999999999988899999999887789999999876543

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.57  E-value=2.7e-14  Score=76.00  Aligned_cols=62  Identities=24%  Similarity=0.410  Sum_probs=57.1

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.++++|+++| |++||.|++|||.++.++++.++...++..+..+.|++.|++.
T Consensus        53 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~  115 (117)
T 2byg_A           53 DNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT  115 (117)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEEEE
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            4689999999999999999 9999999999999999999999999999877899999988653

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.57  E-value=5.1e-14  Score=73.56  Aligned_cols=65  Identities=20%  Similarity=0.331  Sum_probs=59.0

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ...+++|..|.+++||+++| |++||.|++|||.++.+.++.++...++..+..+.+++.|++..+
T Consensus        36 ~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~  101 (106)
T 3axa_A           36 DKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIR  101 (106)
T ss_dssp             SSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCSSC
T ss_pred             CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCccc
Confidence            45689999999999999999 999999999999999988999999999887789999999987654

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.57  E-value=4e-14  Score=73.14  Aligned_cols=61  Identities=30%  Similarity=0.387  Sum_probs=56.1

Q ss_pred             ceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           7 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         7 ~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      +++|..|.++|||+++||+.||.|++|||.++.++++.++...+...+..+.+++.|.+..
T Consensus        35 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~   95 (99)
T 3khf_A           35 HHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTALENT   95 (99)
T ss_dssp             EEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEECSCSS
T ss_pred             CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEEEEECCCc
Confidence            6689999999999999999999999999999999999999999998778999999987653

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.57  E-value=7.2e-14  Score=71.25  Aligned_cols=62  Identities=23%  Similarity=0.322  Sum_probs=56.1

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.++|||+++| |++||.|++|||.++.+.++.++...+...+..+.+++.|.+.
T Consensus        28 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~   90 (92)
T 2qg1_A           28 DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIST   90 (92)
T ss_dssp             SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEECCCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcccc
Confidence            4689999999999999999 9999999999999999888889998888777889999988753

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.57  E-value=1.3e-13  Score=70.19  Aligned_cols=62  Identities=37%  Similarity=0.516  Sum_probs=53.9

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.++|||+++||++||.|++|||.++.++++.++...++..++.+.+.+.+.+.
T Consensus        26 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~~   87 (91)
T 1g9o_A           26 KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET   87 (91)
T ss_dssp             CSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcCCc
Confidence            35899999999999999999999999999999999888999999998877766666665443

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=4.1e-14  Score=72.53  Aligned_cols=62  Identities=27%  Similarity=0.300  Sum_probs=55.4

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.+++||+++||++||.|++|||+++.++++.++...+...+..+.+++.|++.
T Consensus        31 ~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~   92 (94)
T 2eeg_A           31 SAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSSGPS   92 (94)
T ss_dssp             TSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEEEEEECCSS
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            45789999999999999999999999999999999888888888888766789999988764

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.56  E-value=5.3e-14  Score=71.95  Aligned_cols=62  Identities=19%  Similarity=0.380  Sum_probs=55.6

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.+++||+++| |+.||.|++|||.++.+.++.++...++..++.+.+++.+...
T Consensus        27 ~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~   89 (93)
T 3o46_A           27 TGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPGSK   89 (93)
T ss_dssp             TCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEEEEECC--
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCC
Confidence            5689999999999999999 9999999999999998889999999998887788998887543

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.56  E-value=4.1e-14  Score=72.51  Aligned_cols=62  Identities=40%  Similarity=0.528  Sum_probs=55.4

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      .+++|..|.++|||+++||+.||.|++|||.++.++++.++...++..++.+.+++.|.+..
T Consensus        29 ~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~r~~~~   90 (95)
T 3r68_A           29 KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKELE   90 (95)
T ss_dssp             CSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEECC--
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEECCccc
Confidence            48999999999999999999999999999999998888999999998778888888876654

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.56  E-value=7.4e-14  Score=72.87  Aligned_cols=64  Identities=22%  Similarity=0.398  Sum_probs=57.2

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.++|+|+++| |+.||.|++|||.++.+.++.++...++..+..+.+++.|++...
T Consensus        32 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~   96 (105)
T 2awx_A           32 DNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY   96 (105)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCCSEEEEEEECCCC--
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCCCCC
Confidence            4589999999999999999 999999999999999988899999999887789999999987654

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.56  E-value=7.6e-14  Score=71.78  Aligned_cols=60  Identities=32%  Similarity=0.474  Sum_probs=54.1

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      ..+++|..|.+++||+++||++||.|++|||.++.++++.++...+...++.+.+++.+.
T Consensus        36 ~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~   95 (96)
T 2ego_A           36 EMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYG   95 (96)
T ss_dssp             CEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEECC
T ss_pred             CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEC
Confidence            347899999999999999999999999999999998779999999988777888888764

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.56  E-value=1.2e-13  Score=70.28  Aligned_cols=60  Identities=32%  Similarity=0.528  Sum_probs=53.8

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      ..+++|..|.+++||+++||++||.|++|||+++.++++.++...+...+..+.+++.|+
T Consensus        31 ~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   90 (91)
T 1m5z_A           31 EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN   90 (91)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEEC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            368999999999999999999999999999999998888888888877677899998875

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.56  E-value=5.8e-14  Score=72.93  Aligned_cols=61  Identities=34%  Similarity=0.519  Sum_probs=54.4

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      .+++|..|.++|||+++| |++||.|++|||.++.++++.++..++...++.+.+++.|...
T Consensus        39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  100 (103)
T 2fcf_A           39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS  100 (103)
T ss_dssp             --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCC
T ss_pred             CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCC
Confidence            589999999999999999 9999999999999999777999999998877789999988654

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.56  E-value=9e-14  Score=70.80  Aligned_cols=63  Identities=27%  Similarity=0.441  Sum_probs=54.0

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      .+++|..|.++|+|+++| |+.||.|++|||.++.++++.++...+...++.+.+++.|++...
T Consensus        23 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~~~   86 (92)
T 3cyy_A           23 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDERAT   86 (92)
T ss_dssp             EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEC-----
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCcee
Confidence            478899999999999999 999999999999999988999999999877678899999877654

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.56  E-value=4.4e-14  Score=73.98  Aligned_cols=64  Identities=23%  Similarity=0.472  Sum_probs=57.2

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ...+++|..|.+++||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++..
T Consensus        42 ~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~  106 (108)
T 2jre_A           42 EATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRLPL  106 (108)
T ss_dssp             CCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHHHCSEEEEEEEECCCC
T ss_pred             CCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcC
Confidence            34589999999999999999 99999999999999998889999988887667999999987654

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.56  E-value=4.7e-14  Score=71.65  Aligned_cols=62  Identities=24%  Similarity=0.430  Sum_probs=54.8

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      .+++|..|.++++|+++| |+.||.|++|||.++.+.++.++...++..++.+.+++.+....
T Consensus        21 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v~~~~~~   83 (88)
T 3e17_A           21 SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLEH   83 (88)
T ss_dssp             EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEECCC---
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEeCCCcc
Confidence            478999999999999999 99999999999999988899999999999888999998765443

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.56  E-value=5.4e-14  Score=74.85  Aligned_cols=62  Identities=26%  Similarity=0.492  Sum_probs=56.8

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      .+++|..|.++|||+++| |++||.|++|||.++.++++.++...++..+..+.+++.|++..
T Consensus        53 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~~  115 (117)
T 2fne_A           53 LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDET  115 (117)
T ss_dssp             EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECSCE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence            479999999999999999 99999999999999999999999999988777899999987653

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.56  E-value=9.3e-14  Score=71.96  Aligned_cols=62  Identities=26%  Similarity=0.432  Sum_probs=56.2

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.++++|+++| |+.||.|++|||+++.++++.++...+...+..+.+++.|++.
T Consensus        36 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~   98 (101)
T 2jik_A           36 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLE   98 (101)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCCSEEEEEEEEESC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCC
Confidence            4689999999999999999 9999999999999999888999999888777789999988654

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.56  E-value=5.8e-14  Score=74.64  Aligned_cols=63  Identities=22%  Similarity=0.285  Sum_probs=57.6

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      .+++|..|.++++|+++| |++||.|++|||.++.++++.++..+++..+..+.|++.|++...
T Consensus        49 ~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~  112 (117)
T 1ujd_A           49 IGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNMS  112 (117)
T ss_dssp             EEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESSCCCC
T ss_pred             cCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEECCccc
Confidence            378999999999999999 999999999999999988999999999887789999999887654

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.56  E-value=6.2e-14  Score=74.91  Aligned_cols=63  Identities=25%  Similarity=0.397  Sum_probs=57.7

Q ss_pred             CceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      .+++|..|.+++||+++ ||++||.|++|||.++.++++.++...++..++.+.|++.|++...
T Consensus        53 ~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~~~  116 (120)
T 2iwo_A           53 VPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVS  116 (120)
T ss_dssp             EEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEECCTTSS
T ss_pred             CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCccc
Confidence            47899999999999999 8999999999999999988999999999988889999999877653

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.55  E-value=7e-14  Score=73.01  Aligned_cols=63  Identities=33%  Similarity=0.483  Sum_probs=56.8

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.++|||+++||++||.|++|||.++.++++.++...+...+..+.+++.|++..
T Consensus        25 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~   87 (106)
T 3ngh_A           25 TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSY   87 (106)
T ss_dssp             CCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEEEECHHHH
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEECCee
Confidence            457999999999999999999999999999999998888899999987778999999986543

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.55  E-value=1.1e-13  Score=72.77  Aligned_cols=63  Identities=32%  Similarity=0.555  Sum_probs=57.1

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      .+++|..|.+++||+++| |++||.|++|||.++.++++.++...++..  +..+.+++.|++..+
T Consensus        39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~  104 (111)
T 2koj_A           39 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAF  104 (111)
T ss_dssp             SCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECCCCC
T ss_pred             cCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCCc
Confidence            689999999999999999 999999999999999888899999999875  578999999987655

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.55  E-value=2.4e-14  Score=73.43  Aligned_cols=63  Identities=30%  Similarity=0.377  Sum_probs=56.8

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.+++||+++||++||.|++|||.++.++++.++...+...+..+.+++.|++..
T Consensus        29 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~~   91 (94)
T 1vb7_A           29 HTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGP   91 (94)
T ss_dssp             TEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCCC
T ss_pred             CCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCcC
Confidence            347899999999999999999999999999999998888999999987768899999987654

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.55  E-value=3.9e-14  Score=73.28  Aligned_cols=60  Identities=13%  Similarity=0.318  Sum_probs=54.2

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      ..+++|..|.+++||+++| |++||.|++|||.++.++++.++...++..++.+.+++.+.
T Consensus        35 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~L~V~~~   95 (97)
T 2ejy_A           35 KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPN   95 (97)
T ss_dssp             TCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEEEEEECC
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            4689999999999999999 99999999999999997779999999988767888888754

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.55  E-value=7e-14  Score=74.55  Aligned_cols=61  Identities=18%  Similarity=0.313  Sum_probs=56.4

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      ...+++|..|.++++|+++| |++||.|++|||.++.++++.++...++..+..+.+++.|.
T Consensus        51 ~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~v~R~  112 (118)
T 3b76_A           51 WDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEV  112 (118)
T ss_dssp             CCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCSEEEEEEEEE
T ss_pred             CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            34679999999999999999 99999999999999999999999999998888999998874

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.55  E-value=7.7e-14  Score=73.65  Aligned_cols=62  Identities=19%  Similarity=0.416  Sum_probs=56.1

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.++++|+++| |++||.|++|||.++.++++.++...++..+..+.+++.|++.
T Consensus        48 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~  110 (112)
T 2r4h_A           48 NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGET  110 (112)
T ss_dssp             TCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECCEE
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            4689999999999999999 9999999999999999888999998888777899999988653

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.55  E-value=1.2e-13  Score=69.46  Aligned_cols=59  Identities=29%  Similarity=0.377  Sum_probs=52.4

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEe
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVP   63 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~   63 (81)
                      ..+++|..|.+++||+++| |++||.|++|||.++.++++.++...+...  +..+.+++.|
T Consensus        24 ~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R   85 (85)
T 2i04_A           24 DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR   85 (85)
T ss_dssp             TBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence            4569999999999999999 999999999999999988899999999876  4688887754

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.55  E-value=6.6e-14  Score=73.50  Aligned_cols=63  Identities=22%  Similarity=0.422  Sum_probs=55.7

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC---CCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS---PAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~---~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.+++||+++| |++||.|++|||+++.++++.++...++..   +..+.|++.|....
T Consensus        32 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~~   98 (108)
T 3cbz_A           32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGG   98 (108)
T ss_dssp             CCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC-
T ss_pred             CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCCCC
Confidence            5689999999999999999 999999999999999988899999999765   45799999886543

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.55  E-value=4.1e-14  Score=74.67  Aligned_cols=65  Identities=15%  Similarity=0.252  Sum_probs=58.8

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ...+++|..|.++|||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++...
T Consensus        33 ~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~   98 (113)
T 2g5m_B           33 EKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGE   98 (113)
T ss_dssp             CCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSCSSCEEEEEECCCCT
T ss_pred             CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCCCCC
Confidence            35689999999999999999 999999999999999988899999989887789999999987654

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.55  E-value=9.3e-14  Score=74.52  Aligned_cols=62  Identities=35%  Similarity=0.534  Sum_probs=56.1

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.++|||+++| |++||.|++|||.++.++++.++...++..++.+.+++.|...
T Consensus        58 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  120 (123)
T 2iwq_A           58 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS  120 (123)
T ss_dssp             CCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEECCCC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            3589999999999999999 9999999999999999777999999998877789999887543

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.55  E-value=1.6e-13  Score=71.82  Aligned_cols=63  Identities=21%  Similarity=0.386  Sum_probs=57.0

Q ss_pred             CCCceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ...+++|..|.+++||+++ ||++||.|++|||.++.+.++.++...++..+..+.+++.|...
T Consensus        39 ~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~  102 (107)
T 1uhp_A           39 SSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTS  102 (107)
T ss_dssp             CSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCS
T ss_pred             CCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCC
Confidence            3568999999999999999 89999999999999999889999999998877899999988654

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.54  E-value=1.1e-13  Score=75.65  Aligned_cols=65  Identities=22%  Similarity=0.331  Sum_probs=56.4

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~~~   68 (81)
                      ...|++|..|.+++||+++||++||.|++|||.++.++++.++..++.... ..+.+++.|++...
T Consensus        62 ~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~  127 (139)
T 2vz5_A           62 TDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQK  127 (139)
T ss_dssp             TCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEEECC---
T ss_pred             CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEECCEEE
Confidence            357899999999999999999999999999999999888999999998743 68999999987654

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.54  E-value=2.5e-13  Score=72.68  Aligned_cols=64  Identities=27%  Similarity=0.346  Sum_probs=57.6

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.++++|+++| |+.||.|++|||+++.++++.++..+++..  +..+.|++.|+....
T Consensus        43 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~  109 (123)
T 1ueq_A           43 DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLP  109 (123)
T ss_dssp             SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESCCCC
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCCC
Confidence            5679999999999999999 999999999999999988999999999884  479999999976544

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.54  E-value=1.1e-13  Score=68.79  Aligned_cols=59  Identities=27%  Similarity=0.457  Sum_probs=53.2

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      .+++|..|.++++|+++| |++||.|++|||.++.++++.++...+....+.+.+++.|+
T Consensus        21 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   80 (81)
T 2rcz_A           21 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD   80 (81)
T ss_dssp             EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence            478999999999999999 99999999999999998899999999987667888888775

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.54  E-value=1.1e-13  Score=73.20  Aligned_cols=63  Identities=25%  Similarity=0.451  Sum_probs=57.3

Q ss_pred             CCceEEEeeCCCCHHhhCCC-CCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGL-VPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl-~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.+++||+++|+ +.||.|++|||+++.++++.++..+++..++.+.+++.|.+..
T Consensus        47 ~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~  110 (113)
T 1va8_A           47 MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSGP  110 (113)
T ss_dssp             SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEEECCCCC
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcc
Confidence            46899999999999999998 9999999999999998899999999988777899999987654

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.54  E-value=2.9e-14  Score=71.53  Aligned_cols=61  Identities=28%  Similarity=0.424  Sum_probs=54.4

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ..+++|..|.+++||+++||++||.|++|||.++.++++.++...+...+..+.+++.|+.
T Consensus        22 ~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~   82 (83)
T 2kv8_A           22 QAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAEGV   82 (83)
T ss_dssp             SSSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEEEEECCC
T ss_pred             CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCC
Confidence            3478899999999999999999999999999999988889999998776678899988864

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.54  E-value=5.3e-14  Score=73.05  Aligned_cols=64  Identities=39%  Similarity=0.510  Sum_probs=57.0

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.+++||+++||+.||.|++|||.++.++++.++...+...+..+.+++.|++...
T Consensus        29 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~   92 (102)
T 2d90_A           29 QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAES   92 (102)
T ss_dssp             SSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEEEEECSTTCCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCCce
Confidence            4689999999999999999999999999999999987789999998877789999998866543

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.54  E-value=5.1e-14  Score=74.70  Aligned_cols=64  Identities=19%  Similarity=0.337  Sum_probs=58.4

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcC-CCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIA-DLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~-~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.+++||+++| |++||.|++|||.++. ++++.++...+...+..+.+++.|++...
T Consensus        48 ~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~  113 (117)
T 2o2t_A           48 ELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSLPQ  113 (117)
T ss_dssp             CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCCSEEEEEEESSCCGG
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCEEEEEEEeCCcce
Confidence            4589999999999999999 9999999999999998 88999999999887789999999987654

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.9e-13  Score=70.77  Aligned_cols=62  Identities=26%  Similarity=0.410  Sum_probs=55.6

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.+++||+++||++||.|++|||.++.++++.++...++. +..+.+++.|++..
T Consensus        35 ~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l~v~R~g~~   96 (100)
T 2eeh_A           35 GLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS-SSRLHMMVRRMGSG   96 (100)
T ss_dssp             TCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS-CSSEEEEEEECSCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC-CCEEEEEEEECCcC
Confidence            468999999999999999999999999999999998778888888877 58899999997654

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.54  E-value=1.9e-13  Score=71.07  Aligned_cols=61  Identities=23%  Similarity=0.374  Sum_probs=54.3

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPK   64 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~   64 (81)
                      ...|++|..|.++|||+++||++||.|++|||.++.+.++.++...+.... ..+.+++.|+
T Consensus        43 ~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           43 TDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             TCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred             CCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence            467899999999999999999999999999999999888999999997643 6888888774

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=1e-13  Score=70.77  Aligned_cols=63  Identities=24%  Similarity=0.386  Sum_probs=56.0

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ...+++|..|.+++||+++| |++||.|++|||+++.++++.++...+...+..+.+++.|+..
T Consensus        28 ~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~   91 (93)
T 2dkr_A           28 QNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSGPS   91 (93)
T ss_dssp             SSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEEEEEECCCCS
T ss_pred             CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEeCCC
Confidence            35689999999999999996 9999999999999999888999999998777788898887653

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.53  E-value=5.7e-14  Score=73.09  Aligned_cols=64  Identities=14%  Similarity=0.166  Sum_probs=56.6

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.+++||+++||++||.|++|||+++.++++.++...+...+..+.+++.|++...
T Consensus        28 ~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~~   91 (103)
T 1wf7_A           28 NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA   91 (103)
T ss_dssp             TEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCCSCCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCcC
Confidence            3468899999999999999999999999999999988888888888777788999998877654

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.53  E-value=1.4e-13  Score=70.01  Aligned_cols=60  Identities=22%  Similarity=0.242  Sum_probs=54.3

Q ss_pred             CCceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      ..+++|..|.++|||+++ ||++||.|++|||.++.++++.++...+...+..+.+++.|.
T Consensus        29 ~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v~l~v~r~   89 (90)
T 1qav_A           29 KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM   89 (90)
T ss_dssp             TEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEC
T ss_pred             CCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEe
Confidence            357899999999999999 899999999999999998899999999988778888888763

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.53  E-value=7.4e-14  Score=70.94  Aligned_cols=61  Identities=28%  Similarity=0.449  Sum_probs=53.9

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~   65 (81)
                      ..+++|..|.++|||+++| |++||.|++|||.++.+.++.++...+...+  ..+.+++.|..
T Consensus        26 ~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~~   89 (90)
T 2q9v_A           26 GEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQTR   89 (90)
T ss_dssp             TSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEECC
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecc
Confidence            3579999999999999999 9999999999999998779999999887764  38999988753

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.53  E-value=9.2e-14  Score=72.51  Aligned_cols=62  Identities=24%  Similarity=0.396  Sum_probs=56.8

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.+++||+++| |++||.|++|||+++.++++.++...++..+..+.|++.|++.
T Consensus        37 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~   99 (105)
T 1wha_A           37 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG   99 (105)
T ss_dssp             CCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEECCC
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            4689999999999999999 9999999999999999888999999998777789999998754

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.53  E-value=1.2e-13  Score=72.41  Aligned_cols=62  Identities=15%  Similarity=0.178  Sum_probs=55.4

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..|++|..|.+++||+++| |++||.|++|||+++.+.++.++...+...++.+.+++.|...
T Consensus        24 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~   86 (106)
T 2la8_A           24 EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKP   86 (106)
T ss_dssp             SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEEEEECCS
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCC
Confidence            4589999999999999999 9999999999999999888888888888777789999988643

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.53  E-value=8.3e-14  Score=74.06  Aligned_cols=63  Identities=21%  Similarity=0.452  Sum_probs=57.4

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      .+++|..|.++++|+++| |++||.|++|||+++.+.++.++..+++..+..+.|++.|.+...
T Consensus        42 ~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~  105 (117)
T 1v62_A           42 SVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQ  105 (117)
T ss_dssp             CEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEEECCBTTBC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCCCC
Confidence            349999999999999999 999999999999999877999999999977789999999877654

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.53  E-value=1e-13  Score=70.42  Aligned_cols=61  Identities=23%  Similarity=0.249  Sum_probs=53.1

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~   65 (81)
                      ..+++|..|.++|||+++||++||.|++|||.++.+.++.++..++..  .+..+.+++.|++
T Consensus        27 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g   89 (90)
T 2eaq_A           27 IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG   89 (90)
T ss_dssp             TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence            457899999999999999999999999999999954589999988874  3478999998865

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.52  E-value=8.5e-14  Score=72.86  Aligned_cols=63  Identities=16%  Similarity=0.291  Sum_probs=57.2

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.+++||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++..
T Consensus        39 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~  102 (107)
T 1wf8_A           39 KLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPS  102 (107)
T ss_dssp             EEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEEEEEECCC
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCCCC
Confidence            4589999999999999999 99999999999999998889999999988778999999886543

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.52  E-value=1.9e-13  Score=71.26  Aligned_cols=61  Identities=31%  Similarity=0.418  Sum_probs=55.1

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.+++||+++||++||.|++|||.++.++++.++...++. +..+.+++.|+..
T Consensus        40 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~v~l~v~r~~~  100 (104)
T 1wi2_A           40 QLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT-AREISMRVRFFSG  100 (104)
T ss_dssp             CCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH-SSSEEEEEECCCC
T ss_pred             CCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCEEEEEEEECCC
Confidence            358999999999999999999999999999999997779999999988 5789999988654

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.52  E-value=5.6e-14  Score=73.14  Aligned_cols=64  Identities=28%  Similarity=0.359  Sum_probs=56.8

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND   67 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~   67 (81)
                      ...+++|..|.+++||+++| |++||.|++|||+++.++++.++..+++..  +..+.|++.|+...
T Consensus        32 ~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~   98 (103)
T 1uep_A           32 PGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLS   98 (103)
T ss_dssp             TTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCCCC
Confidence            35679999999999999999 999999999999999887899999999876  57999999987543

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.52  E-value=6.1e-14  Score=73.50  Aligned_cols=64  Identities=28%  Similarity=0.470  Sum_probs=58.1

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.+++||+++| |+.||.|++|||.++.++++.++...+...+..+.+++.|++...
T Consensus        41 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~  105 (108)
T 1q7x_A           41 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPT  105 (108)
T ss_dssp             SCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHTTSEEEEEEECCCCSC
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCccC
Confidence            4689999999999999999 999999999999999988888999999887789999999876543

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.52  E-value=6.1e-14  Score=72.69  Aligned_cols=61  Identities=25%  Similarity=0.364  Sum_probs=55.3

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      .+++|..|.+++||+++||++||.|++|||+++.++++.++...++..+..+.+++.|+..
T Consensus        36 ~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~   96 (100)
T 1whd_A           36 SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSG   96 (100)
T ss_dssp             SSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEEEEECCS
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            5788999999999999999999999999999999888999999998777789999988754

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.52  E-value=2.6e-13  Score=72.52  Aligned_cols=61  Identities=31%  Similarity=0.538  Sum_probs=54.9

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~   65 (81)
                      ..+++|..|.+++||+++| |++||+|++|||.++.++++.++...++..  +..+.+++.|++
T Consensus        57 ~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g  120 (121)
T 2kom_A           57 SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQE  120 (121)
T ss_dssp             SCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence            3689999999999999999 999999999999999987889999999874  478999998865

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.52  E-value=3.6e-13  Score=70.65  Aligned_cols=59  Identities=27%  Similarity=0.322  Sum_probs=53.7

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      .|++|..|.++++|+++||+.||.|++|||+++.++++.++...++..+..+.+++.+.
T Consensus        45 ~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~  103 (109)
T 1q3o_A           45 ALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV  103 (109)
T ss_dssp             SSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEEC
Confidence            37999999999999999999999999999999998888999999987777888888764

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.52  E-value=4.5e-14  Score=74.68  Aligned_cols=64  Identities=33%  Similarity=0.472  Sum_probs=57.6

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ...+++|..|.++|||+++||++||.|++|||.++.++++.++...++..+..+.+++.|++..
T Consensus        36 ~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~   99 (114)
T 2edz_A           36 DTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSY   99 (114)
T ss_dssp             TCCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEEEEEECHHHH
T ss_pred             CCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCcc
Confidence            3568999999999999999999999999999999998788999999987778999999987654

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.52  E-value=2.5e-13  Score=69.66  Aligned_cols=61  Identities=26%  Similarity=0.517  Sum_probs=55.0

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ...+++|..|.+++||++ ||++||.|++|||.++.++++.++...+...+..+.+++.|+.
T Consensus        33 ~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~   93 (95)
T 1mfg_A           33 DDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV   93 (95)
T ss_dssp             TCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEEEEC
T ss_pred             CCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhhcCCCeEEEEEEeCC
Confidence            456899999999999999 9999999999999999988898988888877789999998864

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.52  E-value=1.8e-13  Score=73.74  Aligned_cols=61  Identities=25%  Similarity=0.391  Sum_probs=56.0

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      .+++|..|.++++|+++| |+.||.|++|||.++.+.++.++..+++..+..+.+++.|.+.
T Consensus        65 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  126 (128)
T 1nf3_C           65 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQ  126 (128)
T ss_dssp             EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHTTTSEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            479999999999999999 9999999999999998889999999998777789999988764

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.51  E-value=2.4e-13  Score=73.61  Aligned_cols=61  Identities=30%  Similarity=0.414  Sum_probs=55.6

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCC
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKEN   66 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~   66 (81)
                      .+++|..|.++++|+++| |++||.|++|||+++.+.++.++..+++...  ..+.|++.|++.
T Consensus        65 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~  128 (131)
T 1wfg_A           65 LCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGP  128 (131)
T ss_dssp             EEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEECS
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCCC
Confidence            489999999999999999 9999999999999999889999999998764  789999988654

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.51  E-value=2.1e-13  Score=71.65  Aligned_cols=64  Identities=33%  Similarity=0.560  Sum_probs=58.2

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.+++||+++| |++||.|++|||+++.+.++.++...+...+..+.|++.|++...
T Consensus        35 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~   99 (110)
T 1um1_A           35 APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVET   99 (110)
T ss_dssp             CSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEEEEEECCCHHH
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcce
Confidence            4689999999999999999 999999999999999988899999999887789999999887544

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.51  E-value=2.9e-13  Score=71.31  Aligned_cols=61  Identities=21%  Similarity=0.282  Sum_probs=53.9

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC-eEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~-~~~l~v~~~~   65 (81)
                      ..+++|..|.+++||+++||+.||.|++|||.++.++++.++...++..++ .+.+++.|..
T Consensus        43 ~~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~  104 (109)
T 2vsv_A           43 NAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL  104 (109)
T ss_dssp             SSSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred             CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence            356789999999999999999999999999999998889999999987665 4899888754

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.51  E-value=1.6e-13  Score=70.38  Aligned_cols=61  Identities=18%  Similarity=0.401  Sum_probs=55.3

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ..+++|..|.+++||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++
T Consensus        32 ~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~g   93 (97)
T 2iwn_A           32 PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG   93 (97)
T ss_dssp             CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEEE
T ss_pred             CCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            5689999999999999999 999999999999999988888988888876679999998764

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.51  E-value=2.3e-13  Score=68.68  Aligned_cols=58  Identities=29%  Similarity=0.449  Sum_probs=52.2

Q ss_pred             CceEEEeeCCCCHHhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713           6 DTIFIKHVRPHSPAAA-AGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP   63 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~-~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~   63 (81)
                      .+++|..|.++|||++ +||++||.|++|||.++.++++.++...++..+..+.+++..
T Consensus        28 ~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~~   86 (87)
T 4e34_A           28 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVY   86 (87)
T ss_dssp             EEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred             CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            4689999999999999 799999999999999999889999999998877788887753

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=1.6e-13  Score=71.45  Aligned_cols=63  Identities=24%  Similarity=0.355  Sum_probs=56.4

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.+++||+++| |++||.|++|||+++.++++.++...++..+..+.|++.|++..
T Consensus        37 ~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~  100 (104)
T 2djt_A           37 DTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSG  100 (104)
T ss_dssp             ECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSEEEEEECCCCCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            4689999999999999999 99999999999999998888999988887668999999887653

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.51  E-value=1.2e-13  Score=73.15  Aligned_cols=63  Identities=25%  Similarity=0.434  Sum_probs=57.5

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      .+++|..|.++++|+++| |+.||.|++|||+++.++++.++...++..+..+.|++.|++...
T Consensus        43 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~  106 (116)
T 2dm8_A           43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHY  106 (116)
T ss_dssp             SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSEEEEEEECCSSCC
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCccc
Confidence            589999999999999999 999999999999999988899999999877789999999877655

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.51  E-value=2.7e-13  Score=73.50  Aligned_cols=61  Identities=26%  Similarity=0.317  Sum_probs=55.7

Q ss_pred             ceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           7 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         7 ~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      |++|..|.++++|+++||+.||.|++|||.++.++++.++...++..+..+.+++.+....
T Consensus        66 gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~~~~~~  126 (132)
T 3l4f_D           66 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRH  126 (132)
T ss_dssp             SEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHHHHHHHHTTTEEEEEEECCCC-
T ss_pred             CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCCC
Confidence            7999999999999999999999999999999998899999999988878999999876543

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.51  E-value=1.9e-13  Score=72.48  Aligned_cols=65  Identities=18%  Similarity=0.192  Sum_probs=55.7

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcce
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL   69 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~~   69 (81)
                      ..+++|..|.+++||+++||++||+|++|||+++.+++..+....+...+..+.+++.|++..+.
T Consensus        41 ~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~  105 (117)
T 1uit_A           41 KGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHVHQ  105 (117)
T ss_dssp             TSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEECCCSCCCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCchhh
Confidence            46899999999999999999999999999999999777776665555556799999999877664

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.51  E-value=2.1e-13  Score=68.57  Aligned_cols=55  Identities=20%  Similarity=0.399  Sum_probs=51.0

Q ss_pred             EEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713           9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP   63 (81)
Q Consensus         9 ~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~   63 (81)
                      .|..+.+++||+++||+.||.|++|||+++.+++++++...++..+..++|++.+
T Consensus        26 ~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~L~v~p   80 (82)
T 1r6j_A           26 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP   80 (82)
T ss_dssp             EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEe
Confidence            3788999999999999999999999999999999999999999877899998875

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.51  E-value=6e-14  Score=72.84  Aligned_cols=63  Identities=19%  Similarity=0.398  Sum_probs=56.5

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      .+++|..|.+++||+++| |+.||.|++|||+++.++++.++...++..+..+.+++.|++...
T Consensus        36 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~   99 (103)
T 1wfv_A           36 MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGSG   99 (103)
T ss_dssp             EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEEEECTTCSS
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCCC
Confidence            489999999999999999 999999999999999988899998888866689999999887654

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.51  E-value=2.4e-13  Score=69.96  Aligned_cols=60  Identities=15%  Similarity=0.177  Sum_probs=54.5

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      ..+++|..|.+++||+++| |++||.|++|||.++.+.++.++...+...++.+.+++.|.
T Consensus        30 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~   90 (96)
T 2qkv_A           30 EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRP   90 (96)
T ss_dssp             SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECC
T ss_pred             CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEEeC
Confidence            3579999999999999999 99999999999999998888888888888778899999875

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.50  E-value=1.5e-13  Score=72.28  Aligned_cols=64  Identities=17%  Similarity=0.365  Sum_probs=57.4

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.++++|+++| |+.||.|++|||+++.++++.++...++..+..+.+++.|++...
T Consensus        37 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~~  101 (111)
T 2dlu_A           37 TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGD  101 (111)
T ss_dssp             SSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEEEEEEEESCTTC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCCCc
Confidence            3689999999999999999 999999999999999988899999988876689999999876553

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.50  E-value=2.4e-13  Score=72.88  Aligned_cols=64  Identities=27%  Similarity=0.513  Sum_probs=58.1

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.+++||+++| |++||.|++|||.++.++++.++...++..+..+.|++.|++...
T Consensus        50 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~  114 (124)
T 2daz_A           50 RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAV  114 (124)
T ss_dssp             SCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSEEEEEEEECTTHH
T ss_pred             cCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Confidence            3589999999999999999 999999999999999988899999888887789999999987654

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.50  E-value=4.4e-14  Score=73.54  Aligned_cols=64  Identities=28%  Similarity=0.397  Sum_probs=57.6

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcce
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL   69 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~~   69 (81)
                      .+++|..|.+++||+++||++||.|++|||+++.++++.++..++...+..+.+++.|++....
T Consensus        29 ~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~~~~   92 (103)
T 1v5l_A           29 QPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLW   92 (103)
T ss_dssp             EEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTTTTS
T ss_pred             CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCeEcc
Confidence            4789999999999999999999999999999999767999999998777899999999877653

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.50  E-value=2.5e-13  Score=72.65  Aligned_cols=65  Identities=28%  Similarity=0.392  Sum_probs=57.3

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcce
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDLL   69 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~~   69 (81)
                      ..+++|..|.+++||+++| |++||.|++|||+++.++++.++..+++..  +..+.|++.|++...+
T Consensus        44 ~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~  111 (122)
T 1v5q_A           44 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESV  111 (122)
T ss_dssp             SSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEECCCSC
T ss_pred             CCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEECCcccc
Confidence            4568999999999999999 999999999999999976799999999775  4689999999876553

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.50  E-value=3.2e-13  Score=69.09  Aligned_cols=61  Identities=33%  Similarity=0.543  Sum_probs=53.9

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.+++||+++||+.||.|++|||+++.++++.++...++ .+..+.|++.|++.
T Consensus        28 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~v~l~v~R~~~   88 (93)
T 2dls_A           28 DRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVALTLLGSSS   88 (93)
T ss_dssp             SSSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT-SSSEEEEEEECCCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc-CCCEEEEEEEECCC
Confidence            46889999999999999999999999999999999887888777776 46899999998754

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.50  E-value=5.3e-13  Score=71.64  Aligned_cols=64  Identities=28%  Similarity=0.388  Sum_probs=56.2

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.+++||+++||++||.|++|||.++.++++.++...+..  .+..+.+++.|++..+
T Consensus        50 ~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~  115 (124)
T 3tsv_A           50 DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVY  115 (124)
T ss_dssp             TSCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCchh
Confidence            468999999999999999999999999999999998777999998874  4578999999876544

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.50  E-value=3.9e-13  Score=69.85  Aligned_cols=62  Identities=21%  Similarity=0.398  Sum_probs=56.1

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      .+++|..|.++|||+++| |++||.|++|||.++.++++.++...+...+..+.+++.|++..
T Consensus        35 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~   97 (104)
T 3i4w_A           35 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEE   97 (104)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECHHH
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECcch
Confidence            489999999999999999 99999999999999988899999988888778999999887543

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.50  E-value=3.8e-13  Score=75.71  Aligned_cols=60  Identities=17%  Similarity=0.293  Sum_probs=55.9

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      ..+++|..|.++++|+++| |+.||.|++|||.++.++++.++...++..+..+.|++.|+
T Consensus       110 ~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g~~v~L~V~R~  170 (170)
T 3egg_C          110 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE  170 (170)
T ss_dssp             SBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCCSEEEEEEEEC
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            4679999999999999999 99999999999999998899999999998878999999874

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.50  E-value=4.7e-13  Score=71.76  Aligned_cols=60  Identities=25%  Similarity=0.381  Sum_probs=55.2

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      ..+++|..|.+++||+++| |+.||.|++|||.++.++++.++...++..++.+.+++.|.
T Consensus        44 ~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~  104 (125)
T 3hpk_A           44 CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL  104 (125)
T ss_dssp             CSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             CCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            3568999999999999999 99999999999999999999999999998878899998873

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.49  E-value=3.6e-13  Score=70.13  Aligned_cols=63  Identities=27%  Similarity=0.393  Sum_probs=55.4

Q ss_pred             CceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      .+++|..|.++++|+++ ||+.||.|++|||.++.++++.++...++..++.+.|++.+.....
T Consensus        35 ~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~~   98 (103)
T 2dc2_A           35 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEH   98 (103)
T ss_dssp             EEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEEEEEEECC---
T ss_pred             CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecCCcc
Confidence            47899999999999995 9999999999999999988999999999988889999998865543

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.49  E-value=3.3e-13  Score=68.86  Aligned_cols=56  Identities=21%  Similarity=0.446  Sum_probs=51.1

Q ss_pred             EEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         9 ~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      +|..|.++|||+++||+.||.|++|||.++.+.++.++...++..+..+.+++.+.
T Consensus        34 ~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~p~   89 (90)
T 1y7n_A           34 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA   89 (90)
T ss_dssp             EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEECC
T ss_pred             EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            79999999999999999999999999999987799999999987777888888753

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.49  E-value=2e-13  Score=73.55  Aligned_cols=64  Identities=28%  Similarity=0.485  Sum_probs=57.8

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ...+++|..|.+++||+++| |++||.|++|||.++.++++.++..+++..+..+.|++.|++..
T Consensus        44 ~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~  108 (129)
T 2dmz_A           44 EASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTS  108 (129)
T ss_dssp             CCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHCCSSEEEEEEEESSS
T ss_pred             CCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence            34689999999999999999 99999999999999998789999999988667999999987654

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=1.5e-13  Score=71.78  Aligned_cols=64  Identities=27%  Similarity=0.494  Sum_probs=57.0

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.+++||+++||++||.|++|||.++..+++.++...+...+..+.+++.|.+...
T Consensus        31 ~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~~   94 (106)
T 2eei_A           31 KKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDK   94 (106)
T ss_dssp             CCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHHCSEEEEEECCTTTSC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCchhh
Confidence            4689999999999999999999999999999999988899999888776678999998876544

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.49  E-value=2.3e-13  Score=73.27  Aligned_cols=63  Identities=25%  Similarity=0.438  Sum_probs=57.5

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcC-CCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIA-DLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~-~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      .+++|..|.++++|+++| |++||.|++|||.++. ++++.++..+++..+..+.|++.|+....
T Consensus        54 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~  118 (128)
T 2db5_A           54 VDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHT  118 (128)
T ss_dssp             EEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSEEEEEEEECCCSS
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCeEEEEEEcCCCCC
Confidence            479999999999999999 9999999999999997 99999999999887789999999876543

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.49  E-value=2.8e-13  Score=70.82  Aligned_cols=59  Identities=36%  Similarity=0.484  Sum_probs=53.1

Q ss_pred             CceEEEeeCCCCHHhhCC--CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC----eEEEEEEeC
Q psy5713           6 DTIFIKHVRPHSPAAAAG--LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA----YLHLLVVPK   64 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g--l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~----~~~l~v~~~   64 (81)
                      .+++|..|.++++|+++|  |+.||.|++|||.++.++++.++...++..++    .+.|++.|+
T Consensus        43 ~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r~  107 (107)
T 3nfk_A           43 MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN  107 (107)
T ss_dssp             EEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEECC
T ss_pred             CCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEEcC
Confidence            468999999999999999  99999999999999999999999999987654    888888763

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=4.2e-13  Score=71.49  Aligned_cols=63  Identities=25%  Similarity=0.409  Sum_probs=56.9

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.++++|+++| |++||.|++|||+++.++++.++...++..+..+.|++.|+...
T Consensus        46 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~  109 (120)
T 2eno_A           46 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQV  109 (120)
T ss_dssp             CCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHCSEEEEEEEEEEEC
T ss_pred             CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcC
Confidence            5689999999999999999 99999999999999998889999998887677899999886554

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.48  E-value=9.5e-14  Score=71.59  Aligned_cols=62  Identities=32%  Similarity=0.422  Sum_probs=53.0

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC-eEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~-~~~l~v~~~~~   66 (81)
                      ..+++|..|.++|||+++||++||.|++|||.++.++++.++...+...++ .+.+++.|++.
T Consensus        32 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~   94 (98)
T 2jxo_A           32 KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD   94 (98)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEECCHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCch
Confidence            348999999999999999999999999999999997679999999987754 55577766543

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.48  E-value=2.5e-13  Score=72.03  Aligned_cols=62  Identities=27%  Similarity=0.443  Sum_probs=56.2

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.++++|+++| |+.||.|++|||.++.+.++.++...++..+..+.|++.|...
T Consensus        49 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~  111 (117)
T 2ehr_A           49 LKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS  111 (117)
T ss_dssp             CCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHTSCSSEEEEECCBSC
T ss_pred             cCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            4689999999999999999 9999999999999999888999999998877889999877544

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=4.2e-13  Score=68.48  Aligned_cols=60  Identities=20%  Similarity=0.256  Sum_probs=53.6

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ..+++|..|.+++||+++| |++||.|++|||.++ +.++.++...++..++.+.+++.|..
T Consensus        28 ~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v~l~v~~~~   88 (91)
T 2e7k_A           28 GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILKILSGP   88 (91)
T ss_dssp             SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSBCEEEECCS
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            4689999999999999987 999999999999999 66999999999887778888888753

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.47  E-value=4.2e-13  Score=70.35  Aligned_cols=62  Identities=29%  Similarity=0.527  Sum_probs=55.5

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKE   65 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~   65 (81)
                      ...+++|..|.+++||+++| |++||.|++|||+++.++++.++...++..+ ..+.|++.|..
T Consensus        42 ~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~~  105 (108)
T 2d92_A           42 TRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP  105 (108)
T ss_dssp             TCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCC
T ss_pred             CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            35679999999999999999 9999999999999999889999999998864 68889988764

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.47  E-value=6e-13  Score=71.77  Aligned_cols=61  Identities=28%  Similarity=0.355  Sum_probs=55.3

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCC
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEN   66 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~   66 (81)
                      .+++|..|.++++|+++| |+.||.|++|||.++.++++.++..+++..  +..+.+++.|+..
T Consensus        43 ~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  106 (129)
T 2kpk_A           43 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYP  106 (129)
T ss_dssp             EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECSC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence            468999999999999999 999999999999999988899999999876  4689999998754

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.47  E-value=3.8e-13  Score=69.89  Aligned_cols=61  Identities=26%  Similarity=0.517  Sum_probs=55.3

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ...+++|..|.+++||++ ||++||.|++|||.++.++++.++...+...+..+.+++.|+.
T Consensus        41 ~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~  101 (103)
T 1n7t_A           41 DDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV  101 (103)
T ss_dssp             SCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEEEECCC
T ss_pred             CCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhhcCCCeEEEEEEecC
Confidence            456899999999999999 9999999999999999988899999988877789999998864

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=5.3e-14  Score=75.62  Aligned_cols=63  Identities=46%  Similarity=0.771  Sum_probs=57.1

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.+++||+++||++||.|++|||.++.++++.++..+++..+..+.|++.|.+..
T Consensus        60 ~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~  122 (126)
T 2yuy_A           60 MDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDSG  122 (126)
T ss_dssp             CCCCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCCC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCCC
Confidence            356899999999999999999999999999999998899999999988778999999887653

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.47  E-value=3.3e-13  Score=71.33  Aligned_cols=62  Identities=35%  Similarity=0.516  Sum_probs=56.0

Q ss_pred             ceEEEeeCCCCHHhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           7 TIFIKHVRPHSPAAA-AGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         7 ~~~V~~v~~~s~a~~-~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      +++|..|.+++||++ +||++||.|++|||+++.++++.++..++...+..+.|++.|++...
T Consensus        44 ~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~  106 (114)
T 1uew_A           44 PHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELN  106 (114)
T ss_dssp             SCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEEECCCSCCC
T ss_pred             CeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcCC
Confidence            569999999999999 99999999999999999977799999999887689999999876654

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.46  E-value=5.7e-13  Score=68.49  Aligned_cols=57  Identities=23%  Similarity=0.436  Sum_probs=50.3

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP   63 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~   63 (81)
                      ..+++|..|.++|||+++||+.||.|++|||+++.++++.++...+.+  ..+.+++..
T Consensus        34 ~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~--~~l~ltV~~   90 (94)
T 3kzd_A           34 IRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ--PSLGLLVRT   90 (94)
T ss_dssp             SCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHS--SEEEEEEEE
T ss_pred             cCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CeEEEEEEe
Confidence            458999999999999999999999999999999998899999998875  566666653

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.46  E-value=1.8e-12  Score=66.60  Aligned_cols=63  Identities=13%  Similarity=0.280  Sum_probs=55.6

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKEN   66 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~   66 (81)
                      ....++|..+.++++|++.| |..||.|++|||+++.++++.++.++|+..+  .+++|.+.+..+
T Consensus        26 g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p~~   91 (95)
T 3gge_A           26 GVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKK   91 (95)
T ss_dssp             SSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEECS
T ss_pred             CCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECccc
Confidence            35568999999999999999 9999999999999999999999999999865  478888876543

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=99.46  E-value=1e-12  Score=68.06  Aligned_cols=63  Identities=16%  Similarity=0.295  Sum_probs=55.2

Q ss_pred             CCCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         3 ~~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      -...|++|..|.++|||+. ||++||.|++|||.++.  ++.++...+...  +..+.+++.|++...
T Consensus         4 ~~~~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~--~~~dl~~~l~~~~~g~~v~l~v~R~g~~~   68 (100)
T 3i18_A            4 VTYDGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFK--SSQEFIDYIHSKKVGDTVKINYKHGDKNE   68 (100)
T ss_dssp             CCCCCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCS--SHHHHHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred             EeCCCEEEEEeCCCCchHH-CCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence            4567999999999999995 99999999999999999  889999988763  468999999987654

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.46  E-value=1.2e-12  Score=68.40  Aligned_cols=62  Identities=26%  Similarity=0.302  Sum_probs=53.3

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.+++||+ +||++||.|++|||+++.+++..+....+...+..+.+++.|++..
T Consensus        38 ~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   99 (107)
T 2h2b_A           38 ETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGG   99 (107)
T ss_dssp             CCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEESCC
T ss_pred             CCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhhCCCCEEEEEEEECCCC
Confidence            4689999999999999 9999999999999999998777666666666668999999887654

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.46  E-value=7.6e-13  Score=75.06  Aligned_cols=64  Identities=23%  Similarity=0.348  Sum_probs=57.6

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.++++|+++| |++||.|++|||.++.++++.++...++..++.+.|++.|++...
T Consensus       129 ~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~  193 (196)
T 3gsl_A          129 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAE  193 (196)
T ss_dssp             BCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEEEEEEEEEESCCC
T ss_pred             CCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCeEEEEEeCCCCcc
Confidence            3579999999999999999 999999999999999977799999999887789999999876543

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.46  E-value=2.4e-13  Score=73.23  Aligned_cols=62  Identities=24%  Similarity=0.373  Sum_probs=56.0

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC-------CCeEEEEEEeCCCc
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS-------PAYLHLLVVPKEND   67 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~-------~~~~~l~v~~~~~~   67 (81)
                      .+++|..|.+++||+++| |++||.|++|||+++.++++.++...++..       +..+.|++.|+...
T Consensus        55 ~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~~  124 (127)
T 1wg6_A           55 LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGP  124 (127)
T ss_dssp             EEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSCS
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCCC
Confidence            479999999999999999 999999999999999988999999999864       57999999987643

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.45  E-value=7.2e-13  Score=69.66  Aligned_cols=61  Identities=20%  Similarity=0.444  Sum_probs=55.0

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC----CeEEEEEEeCCC
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP----AYLHLLVVPKEN   66 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~----~~~~l~v~~~~~   66 (81)
                      .+++|..|.++++|+++| |+.||.|++|||+++.++++.++..+++...    ..+.+.+.|++.
T Consensus        41 ~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~~~  106 (109)
T 1wi4_A           41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP  106 (109)
T ss_dssp             SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECCCC
T ss_pred             CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeCCC
Confidence            369999999999999999 9999999999999999889999999998765    588888888754

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=3.5e-13  Score=69.79  Aligned_cols=61  Identities=21%  Similarity=0.333  Sum_probs=53.5

Q ss_pred             CceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           6 DTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      .+++|..|.+++||+++ ||++||.|++|||+++.++ +.++...++..+..+.+++.|++..
T Consensus        35 ~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~v~l~v~R~~~~   96 (100)
T 2edp_A           35 EPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRILKLIVRRRNSG   96 (100)
T ss_dssp             EEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCSSCEEEEEECCCS
T ss_pred             CCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCCeEEEEEEeCCCC
Confidence            46889999999999999 8999999999999999865 6778888887767889999998754

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=99.45  E-value=1.3e-12  Score=68.83  Aligned_cols=61  Identities=26%  Similarity=0.415  Sum_probs=54.8

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..|++|..|.++|||+++||++||.|++|||.++.  +..++...+.. +..+.+++.|++...
T Consensus        34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~v~l~v~R~g~~~   94 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQIRRGRETL   94 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHHH-CSSEEEEEEETTEEE
T ss_pred             CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEEEEECCEEE
Confidence            57899999999999999999999999999999999  88999988876 478899999987654

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.45  E-value=4.1e-13  Score=71.59  Aligned_cols=65  Identities=26%  Similarity=0.391  Sum_probs=57.3

Q ss_pred             CCCceEEEeeCC--CCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRP--HSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~--~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ...+++|..|.+  ++||+++||+.||.|++|||+++.++++.++...+...+..+.+++.|++...
T Consensus        42 ~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v~l~v~R~g~~~  108 (118)
T 2yub_A           42 YATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQ  108 (118)
T ss_dssp             SCCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEEEEEEECSSCC
T ss_pred             CCCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhCCCEEEEEEEECCEEE
Confidence            357899999999  99999999999999999999999966669999999876668999999987654

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.45  E-value=1e-12  Score=70.45  Aligned_cols=62  Identities=29%  Similarity=0.455  Sum_probs=55.7

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.+++||+++| |++||+|++|||+++.  ++.++..++... +..+.|++.|++..+
T Consensus        47 ~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~l~~~~g~~v~l~v~R~g~~~  110 (124)
T 1wh1_A           47 DIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEENKNFSLLIARPELQL  110 (124)
T ss_dssp             CCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSSCCSCCEEEEECSSCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCEEEEEEEECCEEe
Confidence            3689999999999999999 9999999999999999  899999999875 368899999987765

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.44  E-value=2e-12  Score=69.58  Aligned_cols=63  Identities=30%  Similarity=0.360  Sum_probs=55.2

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.+++||+++||++||.|++|||.++.++++.++...++.. ..+.+++.|++...
T Consensus        45 ~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~v~l~v~R~g~~~  107 (128)
T 1uf1_A           45 GLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS-RHLILTVKDVGRLP  107 (128)
T ss_dssp             TCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTTC-SEEEEEEECCSCCS
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEEEEECCccc
Confidence            3489999999999999999999999999999999988788888877664 68999999877654

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.44  E-value=8.9e-13  Score=75.24  Aligned_cols=61  Identities=26%  Similarity=0.338  Sum_probs=56.1

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.++|||+++||++||.|++|||.++.++++.++...++. +..+.+++.|.+.
T Consensus       109 ~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~v~l~v~r~g~  169 (192)
T 3k1r_A          109 GCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT-EKTVSIKVRHIGL  169 (192)
T ss_dssp             TEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS-SSEEEEEEEECCE
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC-CCeEEEEEEECCc
Confidence            347899999999999999999999999999999998889999999988 7899999998765

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.44  E-value=1.5e-12  Score=65.84  Aligned_cols=60  Identities=27%  Similarity=0.396  Sum_probs=49.5

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~   66 (81)
                      ..+++|..+ +++||+ +||++||.|++|||.++.++++.++...+..  .+..+.+++.|++.
T Consensus        26 ~~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~   87 (88)
T 3bpu_A           26 GGGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQTR   87 (88)
T ss_dssp             SSSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEECC
T ss_pred             CCcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCCc
Confidence            357888887 999999 9999999999999999998888999998875  34689999988653

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.44  E-value=8.4e-13  Score=70.20  Aligned_cols=64  Identities=16%  Similarity=0.308  Sum_probs=55.7

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC-eEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~-~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.+++||+++| |++||.|++|||+++.++++.++...++..+. .+.+++.|++...
T Consensus        41 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~~~~~  106 (119)
T 1x6d_A           41 NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPE  106 (119)
T ss_dssp             CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECCCSS
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCCCcc
Confidence            4589999999999999999 99999999999999998899999999987654 5557777876654

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.44  E-value=2.7e-12  Score=67.52  Aligned_cols=64  Identities=20%  Similarity=0.407  Sum_probs=56.7

Q ss_pred             CCceEEEeeCCCCHHhhCCC-CCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGL-VPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl-~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.++|||+++|+ +.||.|++|||.++.++++.++...+.... ..+.+.+.|++...
T Consensus        25 ~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~   90 (112)
T 1qau_A           25 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF   90 (112)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEECCTTS
T ss_pred             CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeCCccc
Confidence            35899999999999999997 999999999999999767999999997653 68999999987765

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.44  E-value=9.5e-13  Score=70.06  Aligned_cols=62  Identities=23%  Similarity=0.395  Sum_probs=54.1

Q ss_pred             CceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHcC----CCeEEEEEEeCCCc
Q psy5713           6 DTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNS----PAYLHLLVVPKEND   67 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~----~~~~~l~v~~~~~~   67 (81)
                      +.++|..|.+++||+++ ||++||.|++|||.++.++++.++...++..    +..+.|++.|....
T Consensus        43 ~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~~~~  109 (118)
T 1v6b_A           43 GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPK  109 (118)
T ss_dssp             CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCCSC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeCCcc
Confidence            45899999999999999 7999999999999999988899998888653    57899999985433

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.43  E-value=6.7e-13  Score=69.10  Aligned_cols=57  Identities=30%  Similarity=0.441  Sum_probs=51.4

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEE
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV   61 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v   61 (81)
                      ..+++|..|.+++||+++||++||.|++|||+++.++++.++..+++..++.+.+++
T Consensus        47 ~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v  103 (104)
T 2z17_A           47 EMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET  103 (104)
T ss_dssp             SCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHHHHHTTTEEEEEC
T ss_pred             CCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEE
Confidence            458999999999999999999999999999999998899999999988766766654

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.43  E-value=1.4e-13  Score=72.44  Aligned_cols=63  Identities=33%  Similarity=0.444  Sum_probs=56.7

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ...+++|..|.++++|+++| |++||.|++|||+++.++++.++...++..+..+.+++.|+..
T Consensus        42 ~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~  105 (111)
T 1uju_A           42 TDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFE  105 (111)
T ss_dssp             TCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEECCCCCCC
T ss_pred             CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            35689999999999999999 9999999999999999889999999998877889998887643

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.43  E-value=1.8e-12  Score=67.22  Aligned_cols=59  Identities=29%  Similarity=0.435  Sum_probs=51.4

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc---CCCeEEEEEEe
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN---SPAYLHLLVVP   63 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~---~~~~~~l~v~~   63 (81)
                      +.+.+|..|.++|||.++||++||.|++|||.++...+++++...+..   .++.+.+.+..
T Consensus        38 ~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~~   99 (101)
T 3qik_A           38 NKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVAT   99 (101)
T ss_dssp             TTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEec
Confidence            457889999999999999999999999999999866689999999876   46788887754

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.43  E-value=2.8e-12  Score=67.92  Aligned_cols=59  Identities=25%  Similarity=0.393  Sum_probs=52.4

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      .+++|..|.++|||+++| |++||.|++|||.++.+.++.++...++..++.+.+++.+.
T Consensus        50 ~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~  109 (114)
T 2gzv_A           50 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL  109 (114)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEECC
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEec
Confidence            469999999999999999 99999999999999966699999999987767788887653

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=99.43  E-value=1.8e-12  Score=70.37  Aligned_cols=61  Identities=15%  Similarity=0.250  Sum_probs=54.4

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.++|||+ +||+.||.|++|||+++.  ++.++...+...  +..+.+++.|++...
T Consensus        56 ~~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~  118 (134)
T 2l97_A           56 TSGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIA--SSTDLQSALYNHSIGDTIKITYYRNGKEE  118 (134)
T ss_dssp             CSCEEEEECSTTSGGG-TTSCSSCEEEEETTEECC--CHHHHHHHHHHSSTTCEEEEEEEETTEEE
T ss_pred             CCCEEEEEECCCCchH-HCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence            5789999999999999 999999999999999999  888998888764  479999999987654

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.43  E-value=2.1e-12  Score=68.62  Aligned_cols=62  Identities=21%  Similarity=0.398  Sum_probs=55.3

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      .+++|..|.+++||+++| |++||.|++|||.++.+++..+....+...+..+.+++.|++..
T Consensus        38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~  100 (119)
T 1tp5_A           38 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEE  100 (119)
T ss_dssp             CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECHHH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCch
Confidence            689999999999999999 99999999999999998887787777877778999999987544

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.43  E-value=1.7e-12  Score=67.26  Aligned_cols=59  Identities=27%  Similarity=0.395  Sum_probs=52.5

Q ss_pred             ceEEEeeCCCCHHhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCC
Q psy5713           7 TIFIKHVRPHSPAAA-AGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKE   65 (81)
Q Consensus         7 ~~~V~~v~~~s~a~~-~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~   65 (81)
                      +++|..|.+++||++ ++|+.||.|++|||+++.+.++.++..+++.  .+..+.|++.|..
T Consensus        38 ~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~   99 (101)
T 2yt7_A           38 TAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCP   99 (101)
T ss_dssp             CEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence            689999999999999 5699999999999999977799999999987  4578999987753

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.42  E-value=3.3e-13  Score=72.91  Aligned_cols=63  Identities=14%  Similarity=0.283  Sum_probs=56.1

Q ss_pred             CCceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC-eEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~-~~~l~v~~~~~~   67 (81)
                      ..+++|..|.++++|+++ ||+.||.|++|||+++.++++.++...++..++ .+.+++.|....
T Consensus        56 ~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~~  120 (130)
T 1i16_A           56 DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQ  120 (130)
T ss_dssp             CCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESSC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCCCC
Confidence            457999999999999999 799999999999999998899999999998764 688998886543

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.41  E-value=3.4e-12  Score=72.62  Aligned_cols=59  Identities=27%  Similarity=0.538  Sum_probs=55.1

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP   63 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~   63 (81)
                      ...|++|..|.+++||++ ||+.||.|++|||+++.+.++.++...++..+..+.|.+.|
T Consensus        22 ~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r   80 (195)
T 2qbw_A           22 DDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR   80 (195)
T ss_dssp             TCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred             CCCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            467999999999999999 99999999999999999888999999998887899999998

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.41  E-value=6e-13  Score=70.61  Aligned_cols=62  Identities=29%  Similarity=0.320  Sum_probs=55.5

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.++++|+ +||++||.|++|||+++.++++.++...++..+..+.|++.|....
T Consensus        45 ~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~  106 (117)
T 2csj_A           45 ETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKV  106 (117)
T ss_dssp             CCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEEEEEEEEC
T ss_pred             CCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEECCcc
Confidence            5579999999999997 8899999999999999998889999999988778999999886543

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=99.41  E-value=3.6e-12  Score=65.53  Aligned_cols=57  Identities=19%  Similarity=0.245  Sum_probs=50.5

Q ss_pred             eEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCC
Q psy5713           8 IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKEN   66 (81)
Q Consensus         8 ~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~   66 (81)
                      .+|..|.++|||+++||+.||+|++|||+++.  ++.++...+....  ..+.+++.|++.
T Consensus         4 p~V~~V~~~spA~~aGl~~GD~I~~ing~~v~--~~~d~~~~l~~~~~~~~v~l~v~R~g~   62 (95)
T 3id1_A            4 PVVGEIAANSIAAEAQIAPGTELKAVDGIETP--DWDAVRLQLVDKIGDESTTITVAPFGS   62 (95)
T ss_dssp             CBEEEECTTSHHHHTTCCTTCEEEEETTEECS--SHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             CEEEeeCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHHhcCCCcEEEEEEECCC
Confidence            46889999999999999999999999999999  8899999886543  589999999874

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=4e-13  Score=71.44  Aligned_cols=61  Identities=34%  Similarity=0.471  Sum_probs=54.2

Q ss_pred             CceEEEeeCCCCHHhhC--CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC----CeEEEEEEeCCC
Q psy5713           6 DTIFIKHVRPHSPAAAA--GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP----AYLHLLVVPKEN   66 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~--gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~----~~~~l~v~~~~~   66 (81)
                      .+++|..|.+++||+++  ||+.||.|++|||+++.++++.++...++..+    ..+.+++.|+..
T Consensus        41 ~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~  107 (119)
T 2cs5_A           41 MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAV  107 (119)
T ss_dssp             EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCCC
T ss_pred             CCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEcccc
Confidence            36899999999999999  89999999999999999888999999887653    489999988754

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=8.4e-13  Score=68.35  Aligned_cols=62  Identities=31%  Similarity=0.387  Sum_probs=51.5

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.+++||+++||++||.|++|||+++.+++..++...++.. ..+.+++.|++..
T Consensus        34 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~-~~v~l~v~R~g~~   95 (101)
T 1uez_A           34 GVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGS-KKLVLSVYSAGRI   95 (101)
T ss_dssp             TCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSS-SSCCEEECCCCCC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhcCC-CeEEEEEEECCcc
Confidence            4589999999999999999999999999999999988776666655443 5788888876543

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=99.40  E-value=1.6e-13  Score=70.13  Aligned_cols=60  Identities=15%  Similarity=0.332  Sum_probs=53.0

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      .|++|..|.++|||++ ||++||.|++|||.++.  ++.++..++...  +..+.+++.|++...
T Consensus         1 ~Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~   62 (91)
T 2kjp_A            1 NGIYASSVVENMPAKG-KIEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIEREEKEK   62 (91)
T ss_dssp             CCSSCCCCCCSSCCSS-CCCSSCEEEEETTBCCS--SHHHHHHHHSSCCSSCEECEEEESSSCEE
T ss_pred             CceEEEEECCCChHHH-cCCCCCEEEEECCEECC--CHHHHHHHHHcCCCCCEEEEEEEECCEEE
Confidence            3678899999999999 99999999999999999  889999999765  468999999987654

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=99.40  E-value=2.2e-12  Score=67.90  Aligned_cols=61  Identities=28%  Similarity=0.468  Sum_probs=53.9

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..|++|..|.++|||+++||++||.|++|||+++.  ++.++...+.. +..+.+++.|++...
T Consensus        34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~-g~~v~l~v~R~g~~~   94 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLV--DSSELQEAVLT-ESPLLLEVRRGNDDL   94 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHHH-CSSEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCChHHHCCCCCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEEEEECCEEE
Confidence            57899999999999999999999999999999999  88899888854 478899999987554

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=99.40  E-value=2e-12  Score=65.44  Aligned_cols=60  Identities=18%  Similarity=0.116  Sum_probs=51.1

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND   67 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~   67 (81)
                      .|+.|..+.|+|+|+++||++||.|++|||+++.  ++.++...+...  +..+.+++.|++..
T Consensus        19 ~G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~--~~~d~~~~~~~~~~g~~v~l~v~R~g~~   80 (87)
T 2i6v_A           19 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDGQQ   80 (87)
T ss_dssp             EEEEEEECSCHHHHHHTTCCTTCEEEEETTEETT--CHHHHHHHHHTGGGCSEEEEEEEETTEE
T ss_pred             EEEEEEeCCCCCHHHHCCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            3677888888889999999999999999999999  889988887643  46899999997754

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=4.7e-13  Score=68.89  Aligned_cols=60  Identities=23%  Similarity=0.401  Sum_probs=54.4

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ..+++|..|.+++||. +||++||.|++|||+++.+.++.++...++..+..+.+++.|++
T Consensus        30 ~~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~   89 (96)
T 2edv_A           30 SLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCT   89 (96)
T ss_dssp             SSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEEEEEEECC
T ss_pred             CCCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            4578899999999995 89999999999999999988899999999877789999999976

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.40  E-value=4.8e-12  Score=71.71  Aligned_cols=62  Identities=23%  Similarity=0.404  Sum_probs=56.5

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.|+|||+++| |+.||.|++|||+++.++++.+....+...+..+.+++.|++.
T Consensus        34 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~   96 (196)
T 3gsl_A           34 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP   96 (196)
T ss_dssp             CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEEECC
T ss_pred             CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecCC
Confidence            5689999999999999999 9999999999999999888988888888877899999988653

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.2e-12  Score=69.35  Aligned_cols=60  Identities=22%  Similarity=0.369  Sum_probs=53.3

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      .+++|..|.+++||+++||++||.|++|||.++.++++.++..++..  ..+.|++.|....
T Consensus        44 ~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~--~~v~l~v~R~p~~  103 (114)
T 2d8i_A           44 RRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ--PSLGLLVRTYPEL  103 (114)
T ss_dssp             EEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS--SEEEEEEEECCCS
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC--CcEEEEEEECCCC
Confidence            47899999999999999999999999999999997778899888875  4888999886544

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=99.39  E-value=7.6e-13  Score=67.92  Aligned_cols=62  Identities=21%  Similarity=0.426  Sum_probs=54.4

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      ...|++|..|.++|||++ ||++||.|++|||.++.  ++.++..++...  +..+.+++.|++...
T Consensus         3 ~~~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~   66 (94)
T 2kl1_A            3 EAKGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRVTFIRDRKQH   66 (94)
T ss_dssp             CCCCEECCCCCTTSTTBT-TBCTTCEEEEETTBCCC--CHHHHHHHHHHSCTTCCEEEEEEETTEEE
T ss_pred             CCCcEEEEEECCCChHHh-CCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence            356899999999999999 99999999999999999  788999888764  469999999987654

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.39  E-value=1.6e-12  Score=77.51  Aligned_cols=64  Identities=20%  Similarity=0.209  Sum_probs=57.7

Q ss_pred             CCceEEEeeCCCCHHhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAA-AGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~-~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.++++|++ +||+.||.|++|||+++.++++.++..+++..+..+.|++.|.....
T Consensus       102 ~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~L~V~R~~~~~  166 (263)
T 1z87_A          102 KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVS  166 (263)
T ss_dssp             TEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCEEEECCSSSS
T ss_pred             CCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEeCcccc
Confidence            35799999999999999 68999999999999999999999999999988888999999866543

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.38  E-value=1.4e-12  Score=81.32  Aligned_cols=64  Identities=28%  Similarity=0.388  Sum_probs=57.4

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~   68 (81)
                      ..|++|..|.+||||+++||++||.|++|||.++.++++.++...+..  .+..+.+++.|++..+
T Consensus        30 ~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~~~~   95 (391)
T 3tsz_A           30 DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVY   95 (391)
T ss_dssp             TTEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCCccc
Confidence            478999999999999999999999999999999998889999999985  5579999999876543

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.38  E-value=2.5e-12  Score=66.99  Aligned_cols=59  Identities=22%  Similarity=0.307  Sum_probs=52.5

Q ss_pred             eEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHc-----CCCeEEEEEEeCCC
Q psy5713           8 IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQN-----SPAYLHLLVVPKEN   66 (81)
Q Consensus         8 ~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~-----~~~~~~l~v~~~~~   66 (81)
                      ++|..|.+++||+++| |++||.|++|||.++.++++.++..+++.     ..+.+.+.+.|.+.
T Consensus        34 ~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~~   98 (103)
T 1ufx_A           34 PRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNS   98 (103)
T ss_dssp             CEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCCC
T ss_pred             EEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEEEccc
Confidence            4899999999999999 99999999999999998889999999976     34688888887653

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.38  E-value=1.5e-12  Score=70.14  Aligned_cols=60  Identities=25%  Similarity=0.377  Sum_probs=54.0

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~   64 (81)
                      ..+++|..|.+++||+++| |++||.|++|||.++.+.++.++...++..  +..+.|++.|+
T Consensus        48 ~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~  110 (126)
T 1wif_A           48 GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred             CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            3468899999999999999 999999999999999877999999999873  46899999987

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.38  E-value=2.1e-12  Score=67.95  Aligned_cols=64  Identities=17%  Similarity=0.362  Sum_probs=56.7

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.++++|+++| |++||.|++|||+++.++++.++...+...+..+.+++.|++..+
T Consensus        38 ~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~~  102 (113)
T 1um7_A           38 GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEY  102 (113)
T ss_dssp             TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEEEEEECCHHHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECcchh
Confidence            3688999999999999999 999999999999999988888988888877789999998876544

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.37  E-value=3.6e-12  Score=68.44  Aligned_cols=62  Identities=32%  Similarity=0.422  Sum_probs=53.8

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC-eEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~-~~~l~v~~~~~   66 (81)
                      ..+++|..|.+++||+++||+.||.|++|||.++.++++.++..++....+ .+.+++.|++.
T Consensus        32 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~   94 (128)
T 2kjd_A           32 KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD   94 (128)
T ss_dssp             SCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHHH
T ss_pred             CCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCCc
Confidence            358999999999999999999999999999999997779999999987654 56688877654

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.37  E-value=4.7e-12  Score=72.53  Aligned_cols=63  Identities=14%  Similarity=0.176  Sum_probs=56.4

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.++++|+++| |+.||.|++|||+++.++++.++...++..+..+.|++.|....
T Consensus       135 ~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~~~~  198 (206)
T 3r0h_A          135 EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPT  198 (206)
T ss_dssp             SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEECCC
T ss_pred             CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Confidence            3578999999999999999 99999999999999998888999999988778999999885443

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.37  E-value=3.5e-12  Score=67.29  Aligned_cols=63  Identities=33%  Similarity=0.517  Sum_probs=54.3

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC-CCc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK-END   67 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~-~~~   67 (81)
                      ...+++|..|.++++|+++||++||.|++|||+++.+++..++...+... ..+.+++.|+ +..
T Consensus        39 ~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~v~l~v~r~~g~~  102 (114)
T 1x5n_A           39 QKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RSLTISIVAAAGRE  102 (114)
T ss_dssp             SSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC-SSEEEEECSSTTTH
T ss_pred             CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEEEEcCCCCc
Confidence            44689999999999999999999999999999999988777788877765 6788998887 544

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.35  E-value=1.5e-12  Score=68.68  Aligned_cols=60  Identities=23%  Similarity=0.350  Sum_probs=53.1

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC-eEEEEEEeCC
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVVPKE   65 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~-~~~l~v~~~~   65 (81)
                      .+++|..|.++++|+++||+.||.|++|||.++.++++.++...+...++ .+.+++.+..
T Consensus        36 ~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~~~   96 (111)
T 1vae_A           36 TPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLL   96 (111)
T ss_dssp             SSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECEE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEecC
Confidence            46789999999999999999999999999999998899999999987654 6888887643

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.35  E-value=1.4e-11  Score=70.45  Aligned_cols=61  Identities=25%  Similarity=0.228  Sum_probs=55.3

Q ss_pred             CCceEEEeeCCCCHHhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAA-GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~-gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ..+++|..|.+++||+++ ||+.||.|++|||+++.++++.++...+...+..+.+++.|+.
T Consensus        32 ~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~   93 (200)
T 2qt5_A           32 DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYEL   93 (200)
T ss_dssp             SSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEEC
T ss_pred             CCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEeccC
Confidence            457899999999999999 8999999999999999988889999888877789999998865

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=99.35  E-value=4.2e-12  Score=64.50  Aligned_cols=60  Identities=30%  Similarity=0.507  Sum_probs=51.6

Q ss_pred             ceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCCcc
Q psy5713           7 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKENDL   68 (81)
Q Consensus         7 ~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~~~   68 (81)
                      .++|..|.++++|+++||+.||.|++|||+++.  ++.++...+... +..+.+++.|++...
T Consensus         5 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~~~g~~v~l~v~R~g~~~   65 (91)
T 2zpm_A            5 EPVLENVQPNSAASXAGLQAGDRIVXVDGQPLT--QWVTFVMLVRDNPGXSLALEIERQGSPL   65 (91)
T ss_dssp             -CBCSEECTTSHHHHTTCCTTCEEEEETTEECC--CHHHHHHHHHHCTTCCEEEEEEETTEEE
T ss_pred             CeEEEEECCCChHHhcCCCCCCEEEEECCeEcC--CHHHHHHHHhcCCCCeEEEEEEECCeEE
Confidence            356888999999999999999999999999999  889999888764 368899999987654

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.34  E-value=1.2e-11  Score=70.86  Aligned_cols=63  Identities=24%  Similarity=0.237  Sum_probs=56.3

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCC--CCHHHHHHHHHcCCCe-EEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIAD--LPYAEVVQLIQNSPAY-LHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~--~~~~~~~~~l~~~~~~-~~l~v~~~~~~~   68 (81)
                      .+++|..|.++++|+++| |+.||.|++|||+++.+  +++.++...++..+.. +.+++.|++...
T Consensus        45 ~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~  111 (206)
T 3r0h_A           45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPE  111 (206)
T ss_dssp             SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSSEEEEEEECCSSCC
T ss_pred             CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCCceEEEEEecccCC
Confidence            479999999999999998 99999999999999998  7799999988887766 999999876543

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.33  E-value=2.4e-12  Score=81.76  Aligned_cols=64  Identities=28%  Similarity=0.388  Sum_probs=57.6

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~   68 (81)
                      ..|++|..|.+||||+++||++||.|++|||.++.+.++.++...++.  .+..+.|++.|++..+
T Consensus        22 ~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g~~~   87 (468)
T 3shw_A           22 DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVY   87 (468)
T ss_dssp             TTEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHH
T ss_pred             cCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCccc
Confidence            468999999999999999999999999999999998889999999987  5579999999876543

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.32  E-value=3.2e-11  Score=62.01  Aligned_cols=60  Identities=22%  Similarity=0.371  Sum_probs=52.2

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND   67 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~   67 (81)
                      .+++|..|.++  |.++||++||.|++|||+++.++++.++.+.++..  +..+.|++.|++..
T Consensus        32 ~Gv~V~~v~~~--a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~~   93 (96)
T 1ujv_A           32 TGQRVKQILDI--QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGP   93 (96)
T ss_dssp             TEEEEEEESCG--GGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSSC
T ss_pred             CCEEEEEEecc--cccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCCC
Confidence            47889999883  77899999999999999999988899999999875  46999999987654

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.32  E-value=1.2e-11  Score=70.67  Aligned_cols=63  Identities=25%  Similarity=0.419  Sum_probs=56.9

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.++++|+++| |++||.|++|||.++.++++.++..++...+..+.+++.|++..
T Consensus       134 ~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~  197 (200)
T 2qt5_A          134 SRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSV  197 (200)
T ss_dssp             CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEEEEEEC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcc
Confidence            3588999999999999999 99999999999999999999999999988667999999886543

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.32  E-value=1.8e-11  Score=69.82  Aligned_cols=62  Identities=29%  Similarity=0.398  Sum_probs=56.0

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.+++||+++| |+.||.|++|||+++.++++.++...+...  +..+.+++.|++.
T Consensus        35 ~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~   99 (196)
T 1p1d_A           35 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVA   99 (196)
T ss_dssp             SCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEEECSC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecCC
Confidence            4578999999999999999 999999999999999988899999999876  4689999998775

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.31  E-value=1.6e-11  Score=70.10  Aligned_cols=61  Identities=25%  Similarity=0.415  Sum_probs=55.6

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ..+++|..|.++++|+++| |++||.|++|||.++.++++.++..++...+..+.+++.|++
T Consensus       134 ~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~  195 (196)
T 1p1d_A          134 GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDE  195 (196)
T ss_dssp             TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             CCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence            4688999999999999999 999999999999999966699999999887779999998865

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.31  E-value=5.2e-12  Score=67.77  Aligned_cols=63  Identities=21%  Similarity=0.421  Sum_probs=56.0

Q ss_pred             CceEEEeeCCCCHHhhCCC-CCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAGL-VPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl-~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~~~   68 (81)
                      .+++|..|.+++||+++|+ +.||.|++|||+++.++++.++...+.... ..+.+++.|++...
T Consensus        33 ~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~   97 (127)
T 1b8q_A           33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF   97 (127)
T ss_dssp             SCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECCCCSE
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEeCCceE
Confidence            4799999999999999997 999999999999999777999999998754 68999999887654

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=99.31  E-value=9.6e-12  Score=64.89  Aligned_cols=60  Identities=18%  Similarity=0.136  Sum_probs=49.0

Q ss_pred             ceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713           7 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL   68 (81)
Q Consensus         7 ~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~   68 (81)
                      |+.|....|+++|+++||++||.|++|||+++.  ++.++...+..  .+..+.+++.|++...
T Consensus        38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~--~~~d~~~~~~~~~~g~~v~l~v~R~g~~~   99 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDGQQH   99 (105)
T ss_dssp             EEEEEECSCTHHHHHHTCCTTCEEEEETTEETT--STTHHHHHHHHHTTCSEEEEEEEETTEEE
T ss_pred             EEEEecCCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCeEEEEEEECCEEE
Confidence            566777788888899999999999999999999  67777777653  3468999999987543

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=99.29  E-value=2.2e-11  Score=74.92  Aligned_cols=62  Identities=24%  Similarity=0.388  Sum_probs=56.1

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      ..|++|..|.++|||+++||++||+|++|||+++.  ++.++...+...  +..+.+++.|++...
T Consensus       262 ~~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~  325 (345)
T 3stj_A          262 QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGKPL  325 (345)
T ss_dssp             CSSEEEEEECTTSHHHHHTCCTTCEECEETTEECS--CHHHHHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred             CceEEEEEeccCChHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            46899999999999999999999999999999999  899999988763  479999999988755

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=99.28  E-value=3e-11  Score=73.64  Aligned_cols=61  Identities=26%  Similarity=0.415  Sum_probs=55.4

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..|++|..|.+++||+++||++||.|++|||+++.  ++.++...+.. +..+.+++.|++...
T Consensus       255 ~~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~--~~~~l~~~l~~-~~~v~l~v~R~g~~~  315 (325)
T 1lcy_A          255 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQIRRGRETL  315 (325)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHTT-CSSEEEEEEETTEEE
T ss_pred             CCCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcC--CHHHHHHHHhC-CCeEEEEEEECCEEE
Confidence            46899999999999999999999999999999999  88999999876 478999999987655

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.28  E-value=6.2e-11  Score=74.76  Aligned_cols=62  Identities=31%  Similarity=0.455  Sum_probs=57.0

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcce
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL   69 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~~   69 (81)
                      .|++|..|.++++|+++||++||.|++|||+++.  ++.++..+++..++.+.+++.|++..+.
T Consensus       363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~~~~  424 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNESIY  424 (436)
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCeEEEEEEECCEEEE
Confidence            5899999999999999999999999999999999  8999999998877799999999887663

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.27  E-value=1.5e-10  Score=64.52  Aligned_cols=60  Identities=22%  Similarity=0.397  Sum_probs=49.0

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~   64 (81)
                      ..+++|..|.++|||+++||+.||.|++|||+++.+++......++.... ..+.+++.+.
T Consensus        26 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~   86 (166)
T 1w9e_A           26 DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDR   86 (166)
T ss_dssp             TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECC
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcC
Confidence            46899999999999999999999999999999999776644555665544 5889988443

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=99.27  E-value=3.7e-11  Score=73.01  Aligned_cols=62  Identities=23%  Similarity=0.459  Sum_probs=55.6

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.+++||+++||++||.|++|||+++.  ++.++...+..  .+..+.+++.|++...
T Consensus       243 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~  306 (318)
T 1te0_A          243 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDKQL  306 (318)
T ss_dssp             CCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECC--CHHHHHHHHHTSCTTCEEEEEEESSSCEE
T ss_pred             CCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            46899999999999999999999999999999999  88999998875  3479999999987765

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=99.26  E-value=6.1e-11  Score=63.72  Aligned_cols=60  Identities=18%  Similarity=0.287  Sum_probs=51.9

Q ss_pred             CCCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCC
Q psy5713           3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKEN   66 (81)
Q Consensus         3 ~~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~   66 (81)
                      ....+++|..|.+++||+++ |++||.|++|||+++.  ++.++...+..  .+..+.+++ |++.
T Consensus        22 ~~~~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~--~~~dl~~~l~~~~~g~~v~l~V-R~g~   83 (125)
T 2hga_A           22 HQPDGVQIDSVVPGSPASKV-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITT-DQGT   83 (125)
T ss_dssp             -CCCCEEEEEECSSSGGGGT-SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred             CCCCceEEEEECCCChHHHh-cCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEE-ECCE
Confidence            34578999999999999999 9999999999999999  88999988874  346889999 8765

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.26  E-value=1.4e-10  Score=61.31  Aligned_cols=61  Identities=20%  Similarity=0.252  Sum_probs=52.2

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      .+.+|..+.+  ++..+||++||.|++|||.++.++++.++...++..  +..+.|++.|++...
T Consensus        34 ~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~~~   96 (113)
T 3soe_A           34 TGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPS   96 (113)
T ss_dssp             TEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSCC-
T ss_pred             CCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCccC
Confidence            3567888877  578899999999999999999999999999999976  359999999987644

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.89  E-value=6.3e-13  Score=70.26  Aligned_cols=57  Identities=30%  Similarity=0.475  Sum_probs=49.3

Q ss_pred             CceEEEeeCCCCHHhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713           6 DTIFIKHVRPHSPAAA-AGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV   62 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~-~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~   62 (81)
                      .+++|..|.++|||++ +||++||.|++|||.++.+.++.++...++..++.+.+++.
T Consensus        53 ~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~l~V~  110 (112)
T 2lob_A           53 VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV  110 (112)
Confidence            4789999999999999 89999999999999999877889999988776666666553

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.22  E-value=1.2e-10  Score=70.85  Aligned_cols=62  Identities=21%  Similarity=0.165  Sum_probs=54.9

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEe-CCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVP-KENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~-~~~~~   68 (81)
                      ..+++|..|.+++||+++||+.||+|++|||+++.  ++.++...+...  +..+.+++.| ++...
T Consensus       241 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~~g~~~  305 (324)
T 1y8t_A          241 TLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPIN--SADALVAAVRSKAPGATVALTFQDPSGGSR  305 (324)
T ss_dssp             SSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEECSSCCEE
T ss_pred             CCceEEEEECCCChHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCCCEE
Confidence            56899999999999999999999999999999999  888999888653  4789999999 77654

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.19  E-value=9.8e-11  Score=74.18  Aligned_cols=61  Identities=16%  Similarity=0.262  Sum_probs=55.8

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      .|++|..|.++|+|+++||++||.|++|||+++.  ++.++.+++...+..+.+.+.|++..+
T Consensus       386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~~~  446 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVT--DVKSLQTIAQEKKKELLVQVLRGPGSM  446 (451)
T ss_dssp             EEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHTTSSCSCEEEEEEETTEEE
T ss_pred             CceEEEEECCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHhcCCCeEEEEEEECCEEE
Confidence            5789999999999999999999999999999999  889999999887678999999987654

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.19  E-value=1.1e-11  Score=72.08  Aligned_cols=61  Identities=33%  Similarity=0.436  Sum_probs=53.7

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeE-EEEEEeCCC
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYL-HLLVVPKEN   66 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~-~l~v~~~~~   66 (81)
                      .+++|..|.++++|+++||+.||+|++|||.++.++++.++..++...+..+ .+++.|++.
T Consensus        33 ~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~v~~l~V~R~g~   94 (216)
T 2krg_A           33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD   94 (216)
T ss_dssp             CSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHHCSEEEEEECCHHHH
T ss_pred             CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEEECCE
Confidence            4899999999999999999999999999999999889999999887666677 777776553

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.17  E-value=2.4e-10  Score=65.91  Aligned_cols=61  Identities=20%  Similarity=0.339  Sum_probs=48.2

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCC-CEEEEECCEEcCCCCHHHHHHHH-H-cCCCeEEEEEEeCCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPG-DRVVAVNNQTIADLPYAEVVQLI-Q-NSPAYLHLLVVPKEN   66 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~g-d~i~~ing~~~~~~~~~~~~~~l-~-~~~~~~~l~v~~~~~   66 (81)
                      ...|++|..|.++|||+++||+.| |.|++|||+++.++  .++...+ . ..+..+.+++.|++.
T Consensus        14 ~~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~--~~~~~~~~~~~~g~~v~l~v~R~~~   77 (209)
T 3rle_A           14 GTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKD--NDTLKDLLKANVEKPVKMLIYSSKT   77 (209)
T ss_dssp             SSEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSS--SSHHHHHHHHTTTSCEEEEEEETTT
T ss_pred             CCCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCH--HHHHHHHHhcCCCCEEEEEEEecCC
Confidence            456899999999999999999999 99999999999944  3333332 2 234689999988653

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.17  E-value=2.9e-10  Score=72.05  Aligned_cols=61  Identities=26%  Similarity=0.423  Sum_probs=55.0

Q ss_pred             CceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      .|++|..|.++|||+++||+.||+|++|||+++.  ++.++...+...  +..+.+++.|++...
T Consensus       282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~--~~~~l~~~l~~~~~g~~v~l~V~R~g~~~  344 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKIT--QATQVKTTISLLRVGSTVKIIVERDNKPL  344 (451)
T ss_dssp             CCEEEEEECTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred             ceEEEEecCCCChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            7899999999999999999999999999999999  889999888753  479999999987655

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.16  E-value=3.1e-10  Score=71.59  Aligned_cols=62  Identities=24%  Similarity=0.388  Sum_probs=54.7

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      ..|++|..|.++|||+++||+.||.|++|||+++.  ++.++...+...  +..+.+++.|++...
T Consensus       262 ~~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~  325 (436)
T 4a8c_A          262 QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGKPL  325 (436)
T ss_pred             CcceEEEEECCCChHHHCCCCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            46899999999999999999999999999999999  888888888653  468999999987654

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=99.13  E-value=8.3e-10  Score=68.70  Aligned_cols=62  Identities=19%  Similarity=0.359  Sum_probs=54.7

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~   66 (81)
                      .++++|..|.+++||.++||++||.|++|||+++.+++..++...++.. +..+.+++.|++.
T Consensus        98 ~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~  160 (388)
T 1fc6_A           98 GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA  160 (388)
T ss_dssp             SSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             CCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence            4689999999999999999999999999999999977778888888654 3689999998776

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.13  E-value=1.4e-10  Score=71.29  Aligned_cols=61  Identities=18%  Similarity=0.378  Sum_probs=54.7

Q ss_pred             CceEEEeeCCCCHHhhCCCCC-----------CCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVP-----------GDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~-----------gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      .|++|..|.+++||+++||+.           ||+|++|||+++.  ++.++...+...  ++++.+++.|++...
T Consensus       251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~--~~~dl~~~l~~~~~g~~v~l~v~R~g~~~  324 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVS--NGSDLYRILDQCKVGDEVTVEVLRGDHKE  324 (348)
T ss_dssp             SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCS--SSHHHHHHHTTCCTTCEEEEEEECSSSEE
T ss_pred             ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeC--CHHHHHHHHHhCCCcCEEEEEEEECCEEE
Confidence            689999999999999999999           9999999999999  788999988653  479999999987755

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.13  E-value=4.2e-10  Score=74.61  Aligned_cols=62  Identities=21%  Similarity=0.365  Sum_probs=56.5

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..|++|..|.++++|+++| |+.||.|++|||.++.+.++.++...++..++.+.|.+.|+..
T Consensus       330 ~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~L~v~r~~~  392 (721)
T 2xkx_A          330 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE  392 (721)
T ss_pred             CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEeCch
Confidence            3689999999999999999 9999999999999999888999999998887888999887654

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.12  E-value=3.7e-10  Score=74.89  Aligned_cols=62  Identities=23%  Similarity=0.404  Sum_probs=56.7

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.++++|+++| |+.||.|++|||.++.++++.++...++..+..+.+++.|++.
T Consensus        88 ~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~  150 (721)
T 2xkx_A           88 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP  150 (721)
T ss_pred             CCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccccccceEEEeccc
Confidence            5689999999999999999 9999999999999999999999999888777888999988753

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.04  E-value=4.3e-10  Score=64.89  Aligned_cols=58  Identities=26%  Similarity=0.433  Sum_probs=50.3

Q ss_pred             CceEEEeeCCCCHHhhCCCCC-CCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Q psy5713           6 DTIFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKEN   66 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~gl~~-gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~   66 (81)
                      .|++|..|.++|||+++||++ ||.|++||+. +.  ++.++...+... +..+.+++.|++.
T Consensus       112 ~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~--~~~~l~~~l~~~~g~~v~l~v~r~~~  171 (209)
T 3rle_A          112 NVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MN--ESEDLFSLIETHEAKPLKLYVYNTDT  171 (209)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CC--SSSCHHHHHHHTTTSCEEEEEEETTT
T ss_pred             cceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eC--CHHHHHHHHHhCCCCeEEEEEEECCc
Confidence            688999999999999999999 9999999997 77  677788877765 4689999988754

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.01  E-value=5.6e-10  Score=69.59  Aligned_cols=62  Identities=24%  Similarity=0.413  Sum_probs=54.0

Q ss_pred             ceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCCcc
Q psy5713           7 TIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKENDL   68 (81)
Q Consensus         7 ~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~~~   68 (81)
                      +++|..|.++|||+++| |+.||.|++|||.++.++++.++...++..+  ..+.+++.|.+...
T Consensus       233 g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~~~~  297 (388)
T 3suz_A          233 TVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVT  297 (388)
T ss_dssp             CCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEECCSCC
T ss_pred             CEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCccccccccccccc
Confidence            58899999999999999 9999999999999999888888888887753  46899998876544

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=99.00  E-value=3.5e-11  Score=73.49  Aligned_cols=61  Identities=26%  Similarity=0.515  Sum_probs=0.0

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..|++|..|.++|||+++||+.||.|++|||+++.  ++.++...+.. +..+.+++.|++...
T Consensus       253 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~v~l~v~R~g~~~  313 (332)
T 3num_A          253 ISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV--SANDVSDVIKR-ESTLNMVVRRGNEDI  313 (332)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CCceEEEEeccCCChHHcCCCCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEEEEECCEEE
Confidence            46889999999999999999999999999999998  78888888865 568899999987654

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.98  E-value=1.1e-09  Score=71.37  Aligned_cols=61  Identities=15%  Similarity=0.274  Sum_probs=50.7

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~   68 (81)
                      .++++|..|.++|||.++||++||+|++|||.++.   ..++..++..  .+..+.+++.|++...
T Consensus       495 ~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~---~~~l~~~l~~~~~g~~v~l~v~R~g~~~  557 (597)
T 4fgm_A          495 PQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQAT---EQSVKRILERYIPGDTVTIHAFRRDELM  557 (597)
T ss_dssp             TTEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC---TTTHHHHHTTCCTTCEEEEEEEETTEEE
T ss_pred             CCeEEEEEeCCCChHHHCCCCCCCEEEEECCEECC---HHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            45789999999999999999999999999999995   3456666654  3479999999987654

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.88  E-value=6.5e-10  Score=70.40  Aligned_cols=62  Identities=24%  Similarity=0.409  Sum_probs=53.9

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN--SPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~--~~~~~~l~v~~~~~~~   68 (81)
                      ..|++|..|.+++||+++||+.||.|++|||+++.  ++.++...+..  .+..+.+++.|++...
T Consensus       285 ~~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~  348 (448)
T 1ky9_A          285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGKQV  348 (448)
T ss_dssp             CCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCC--SSHHHHHHTTSSBTTCCCEEEEESSSCEE
T ss_pred             CCceEEEEeccCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            36899999999999999999999999999999999  77888888864  3478899999887653

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.88  E-value=2.3e-09  Score=67.20  Aligned_cols=57  Identities=30%  Similarity=0.355  Sum_probs=47.4

Q ss_pred             ceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           7 TIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         7 ~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      .++|..|.++|||+++||++||+|++|||.++.+++   +...++..+..+.+++.|++.
T Consensus        91 ~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~  147 (403)
T 3k50_A           91 NALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV  147 (403)
T ss_dssp             EEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred             eEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence            378999999999999999999999999999998653   555565544689999988754

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.85  E-value=3.9e-08  Score=54.70  Aligned_cols=54  Identities=19%  Similarity=0.359  Sum_probs=47.3

Q ss_pred             EEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713           9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV   62 (81)
Q Consensus         9 ~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~   62 (81)
                      +|..+.++++|+++||+.||.|++|||.++.++....+...+.+.+..+.+.+.
T Consensus       110 ~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v~  163 (166)
T 1w9e_A          110 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM  163 (166)
T ss_dssp             EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEE
T ss_pred             EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEEE
Confidence            788999999999999999999999999999988888887777777677766654

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.85  E-value=2.9e-10  Score=71.99  Aligned_cols=62  Identities=24%  Similarity=0.472  Sum_probs=0.0

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.++++|+++||+.||.|++|||+++.  ++.++..++...++.+.+.+.|++...
T Consensus       382 ~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~--~~~~l~~~l~~~~~~v~l~v~R~g~~~  443 (448)
T 1ky9_A          382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQRGDSTI  443 (448)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CCeEEEEEecCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHcCCCeEEEEEEECCEEE
Confidence            35788999999999999999999999999999999  788999888876568888888877654

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.76  E-value=8.4e-10  Score=68.78  Aligned_cols=56  Identities=23%  Similarity=0.395  Sum_probs=0.0

Q ss_pred             EEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         9 ~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      +|..|.++++|+++||++||.|++|||.++.+.++.++...++..++.+.+++.+.
T Consensus       318 ~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~p~  373 (388)
T 3suz_A          318 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPA  373 (388)
T ss_dssp             --------------------------------------------------------
T ss_pred             EEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEec
Confidence            68899999999999999999999999999988889999999988777888887643

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=98.63  E-value=7.3e-08  Score=62.35  Aligned_cols=63  Identities=16%  Similarity=0.246  Sum_probs=49.1

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCC--------HHHHHHHHHc--CCCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLP--------YAEVVQLIQN--SPAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~--------~~~~~~~l~~--~~~~~~l~v~~~~~~~   68 (81)
                      ..|++|..|.++|||+++ |+.||.|+++||+++....        ..++..++..  .++++.+++.|+++..
T Consensus       276 ~~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~  348 (539)
T 4fln_A          276 NEGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHK  348 (539)
T ss_dssp             SBCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred             cCceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEE
Confidence            469999999999999876 9999999999999996321        1123444443  3479999999988765

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=98.50  E-value=8e-07  Score=57.60  Aligned_cols=55  Identities=15%  Similarity=0.175  Sum_probs=48.6

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC-eEEEE
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLL   60 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~-~~~l~   60 (81)
                      ..++++|..|.+++++..+|++.||+|++|||+++.  +..++.+++.++.+ .+.+.
T Consensus       413 ~~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~--s~~~l~~~l~~~k~~~l~~~  468 (539)
T 4fln_A          413 GEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIR--NIHHLAHLIDMCKDKYLVFE  468 (539)
T ss_dssp             TCCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECC--SHHHHHHHHHTCCSSEEEEE
T ss_pred             CceEEEEEEecCCchhhhcCCCCCCEEEeECCEEcC--CHHHHHHHHHHcCCCeEEEE
Confidence            346899999999999999999999999999999999  99999999998865 44444

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.48  E-value=5.3e-07  Score=61.33  Aligned_cols=59  Identities=12%  Similarity=0.179  Sum_probs=49.1

Q ss_pred             CCceEEEeeCCC--------CHHhhCC--CCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPH--------SPAAAAG--LVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~--------s~a~~~g--l~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~   66 (81)
                      .++++|..+.++        +||.++|  |+ ||+|++|||+++..+  .++...++.. +..+.|++.|++.
T Consensus       747 ~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~--~~~~~~~~~~~g~~v~l~v~r~~~  816 (1045)
T 1k32_A          747 GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAG--SNIYRVLSEKAGTSARIRLSGKGG  816 (1045)
T ss_dssp             TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTT--BCHHHHHHTTTTSEEEEEEECSSS
T ss_pred             CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccch--hhHHHhhcCCCCCEEEEEEECCCC
Confidence            457889999987        9999999  99 999999999999854  4667777654 3689999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	81
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	1e-17
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	2e-15
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	3e-15
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	4e-15
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	5e-15
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	6e-15
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	2e-14
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-14
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	1e-13
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	2e-13
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	3e-13
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	3e-13
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	5e-13
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	6e-13
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	6e-13
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	7e-13
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	7e-13
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	8e-13
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	8e-13
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	1e-12
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-12
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	1e-12
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	1e-12
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	1e-12
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	1e-12
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	2e-12
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-12
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	2e-12
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	2e-12
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	4e-12
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	5e-12
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	5e-12
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	5e-12
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	5e-12
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	7e-12
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	7e-12
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	7e-12
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	9e-12
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	1e-11
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	1e-11
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	2e-11
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	2e-11
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	2e-11
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	2e-11
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	3e-11
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	3e-11
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	4e-11
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	4e-11
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	4e-11
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	4e-11
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	5e-11
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	1e-10
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	3e-10
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	4e-10
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	5e-10
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	2e-09
d1ky9b2	88	b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-t	3e-09
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	3e-09
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	2e-08
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	3e-08
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	3e-08
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	8e-08
d1fc6a3	92	b.36.1.3 (A:157-248) Photosystem II D1 C-terminal	4e-07
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	1e-06
d1lcya1	100	b.36.1.4 (A:226-325) Mitochondrial serine protease	3e-05
d2i6va1	87	b.36.1.5 (A:219-305) General secretion pathway pro	7e-05
d1k32a1	91	b.36.1.3 (A:763-853) Tricorn protease {Archaeon Th	0.001

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (167), Expect = 1e-17
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          ++     +I+ V P SPA  AGL+ GDR+V VN + +    + +VV  I+ +   + LLV
Sbjct: 23 EKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLV 82

Query: 62 VPKEND 67
          V  E D
Sbjct: 83 VDPETD 88

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.7 bits (152), Expect = 2e-15
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE 65
            +++ V     A  AGL  GD ++ VN Q +  + + +VV +I+     L + VV   
Sbjct: 45  QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 102

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (151), Expect = 3e-15
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
          IFI HV+P S +A  GL  GD++V VN    ++L + E V ++++S + L + +V     
Sbjct: 36 IFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-LTISIVAAAGR 94

Query: 68 LLQLT 72
           L +T
Sbjct: 95 ELFMT 99

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.2 bits (151), Expect = 4e-15
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
          +EP D I I  +     A   G +  GDR++A+N+ ++   P +E + L+Q +   + L 
Sbjct: 24 EEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK 83

Query: 61 VVPKEN 66
          +  + +
Sbjct: 84 IKKQTD 89

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (151), Expect = 5e-15
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
            +I  + P   A   G L+ G +V+  N   +    Y EV  +I        + V    N
Sbjct: 51  AYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLN 110

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 6e-15
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          + ++ V    PA  AGL   D V+ +N + +      E+   I++ P+ + LLV
Sbjct: 20 VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLV 73

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (145), Expect = 2e-14
 Identities = 12/55 (21%), Positives = 28/55 (50%)

Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
           I  +     A   G+  G R++ +N Q++   P+ ++V ++ N+   +H+  +P
Sbjct: 23 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP 77

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 4e-14
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL- 59
          DEP   I I  V     A   G L PGD +V V+   +A   +  V+ L+ ++     + 
Sbjct: 30 DEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVN 89

Query: 60 LVVPKE 65
          L V ++
Sbjct: 90 LTVRRK 95

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 1e-13
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
                 I I  ++P S    +G L PGD +++++  ++      E  +L+ +    + L 
Sbjct: 38  LRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLE 97

Query: 61  VVPKENDLLQLT 72
           ++P       L 
Sbjct: 98  ILPVPQSQRPLR 109

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (141), Expect = 2e-13
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV--PKE 65
           I++  V   S A  AGL  GD+++  N   +      +   +I      + +L    P  
Sbjct: 44  IYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHV 103

Query: 66  NDL 68
           + L
Sbjct: 104 HQL 106

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 3e-13
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
          ++I+ + P SPAAA G L  GDR++ VN  ++  L Y   V LI++    +  LV   + 
Sbjct: 38 LYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDV 97

Query: 67 D 67
          +
Sbjct: 98 E 98

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (138), Expect = 3e-13
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
           E M  IFIKHV   SPA   G L PGDR+V V+   + D  + + V+ I+ +   +  +
Sbjct: 32 GEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFM 91

Query: 61 V 61
          V
Sbjct: 92 V 92

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 5e-13
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 8  IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          I++K V     A+  G +  GD+++AVN Q++  + + E V +++ +   + L+V+
Sbjct: 32 IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVL 87

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 6e-13
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 8   IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64
           I+I  V P S A  +GL  GD+++ VN ++  ++ + E V+L+++S  +L L V   
Sbjct: 48  IYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSR-HLILTVKDV 103

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 6e-13
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA----- 55
          +       I  ++    A   G L  G  ++ VN  T+    + E  ++I  +       
Sbjct: 28 NTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRD 87

Query: 56 YLHLLVVPKEN 66
          Y+  LV    +
Sbjct: 88 YIDFLVTEFNS 98

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.1 bits (135), Expect = 7e-13
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          I +  V     A AA L PGD +VA+N Q+  ++ +AE    I+ S + L L +
Sbjct: 32 IIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQL 85

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.1 bits (135), Expect = 7e-13
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IFIK + P SPA   G L  GDR++++N + + +     V+ LI+ +   + L +
Sbjct: 37 IFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI 91

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 8e-13
 Identities = 7/57 (12%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVP-GDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
            +  +         G +  GD +  +N  ++A+    ++ ++++     +   +VP
Sbjct: 27 CIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVP 83

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 8e-13
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          I++  V P S A   GL  GD+++ VN++++A + +AE V+ ++ S   L L V 
Sbjct: 37 IYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKK-LVLSVY 90

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (135), Expect = 1e-12
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IFI  V    PAA AG+  GD+++ VN   +    + E V+ ++ +   + + V
Sbjct: 41 IFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 94

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 1e-12
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLH 58
           DEP + + +K V P  PAA  G +  GD +V +N   +    +A+VV+L Q+ P    ++
Sbjct: 40  DEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVN 99

Query: 59  LLV 61
           L++
Sbjct: 100 LVL 102

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.1 bits (135), Expect = 1e-12
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          I I  V P  PA    L   DRVV VN   + D+ ++  VQ ++ S     ++V
Sbjct: 41 IVISDVLPGGPADG-LLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVV 93

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 1e-12
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
          +       +  + P SPA   G L  GDRV+++N     D    E  QL++++     ++
Sbjct: 34 ETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKVV 93

Query: 61 V 61
          +
Sbjct: 94 L 94

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.7 bits (134), Expect = 1e-12
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
           +P D + I  ++  S A   G L  GD+++A++N  +      + VQ++Q     + L 
Sbjct: 34 RKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLK 93

Query: 61 VVPKEN 66
          +   E+
Sbjct: 94 IRKDED 99

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.2 bits (135), Expect = 1e-12
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
           +       I ++   SPA   G++  GDRV+A+N     D  + E  QL+++S     + 
Sbjct: 41  ETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVT 100

Query: 61  VV 62
           + 
Sbjct: 101 LE 102

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 2e-12
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          + I  + P S AA + L  GD VVA++      + + E    I+++   L L +
Sbjct: 27 LTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL 80

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 2e-12
 Identities = 12/55 (21%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          +++  +    PA   G +  GD+++ +N ++  D+ +A  ++LI++    + LL+
Sbjct: 38 LYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLL 92

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.0 bits (132), Expect = 2e-12
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 3  EPMDTIFIKHVRPHSPAA-AAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          E    IFI  + P   A     L   D V+ VN   +A     +V  ++  + + L + V
Sbjct: 35 EKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITV 94

Query: 62 VP 63
           P
Sbjct: 95 KP 96

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.4 bits (133), Expect = 2e-12
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)

Query: 1   MDEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA---- 55
           +D P+  + +  V     A   G +V GD ++A+N + + D   AE    +Q +      
Sbjct: 38  VDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGD 97

Query: 56  YLHLLVV---PKEND 67
           ++ L+V    PKE D
Sbjct: 98  WIDLVVAVCPPKEYD 112

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.2 bits (130), Expect = 4e-12
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          +++K++RP  P    GL P DR++ VN+    D     VV LI  S   L L++
Sbjct: 34 VYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVI 87

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 5e-12
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          IF+  V+P  PA+   L PGD+++  N  +  ++ + + V L++     + L++V
Sbjct: 45 IFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 98

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.1 bits (130), Expect = 5e-12
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 6  DTIFIKHVRPHSPAA-AAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP 63
          D++ I  +     A  +  L  GD V+ +N   I      EV  L+ +    L  +++P
Sbjct: 41 DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIP 99

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 5e-12
 Identities = 13/57 (22%), Positives = 31/57 (54%)

Query: 6  DTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          + IF++ V+ +SPA+  GL  GD+V+ +N +  A     +  ++++ +      + +
Sbjct: 25 NGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 81

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 5e-12
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IF+  +     A  AG +  GDRV+++N   + +  +   V L+  +   + LL+
Sbjct: 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLL 94

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 7e-12
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          IF+  +    PAA  G L   DR++ VN + ++   + + V+  + +   + + V+
Sbjct: 43 IFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVL 98

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 7e-12
 Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 8   IFIKHVRPHSPAA-AAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
             I  +   SPA   A L  GDR++AVN Q+I ++P+A++V+LI+++   + L ++P+E 
Sbjct: 45  HKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE 104

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 7e-12
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 8  IFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          I+I  +     A   G +  GDR++AVNN  + D+ + E V  ++N+   ++L V 
Sbjct: 33 IYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVA 88

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.3 bits (128), Expect = 9e-12
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          I I  +     A     L  GD +++VN + ++   + E VQ ++ +   + L V
Sbjct: 32 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 1e-11
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 2   DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
           D   + IFI  V P   A   G L  G R++ VN Q++  L + E VQL+++    L +L
Sbjct: 40  DPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVL 99

Query: 61  VVPKEN 66
           V     
Sbjct: 100 VCDGFE 105

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 1e-11
 Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IF+K V     A   G +   D++V V+  ++  +       +++N+   +  ++
Sbjct: 35 IFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVI 89

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.1 bits (127), Expect = 2e-11
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVV 62
          + +  + PH  A+ AG   GD +V++       L  +EV++L+++     + + VV
Sbjct: 38 VQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV 93

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 2e-11
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLH 58
             + T+ I ++    PA  +G L  GD+++++N  ++  LP +    +I+     + + 
Sbjct: 22 GSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVK 81

Query: 59 LLVV 62
          L +V
Sbjct: 82 LNIV 85

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.5 bits (128), Expect = 2e-11
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 6  DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55
            + I H+     AA+ G L PGD +++V +  +      E ++L+QN   
Sbjct: 49 PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITI 99

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (126), Expect = 2e-11
 Identities = 9/54 (16%), Positives = 25/54 (46%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          + I  ++    A+ A +  GD V++++  +   + + E    I+     L++ +
Sbjct: 31 LTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTL 84

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.8 bits (124), Expect = 3e-11
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          IFI  + P   AA  G L   D ++ VN   + ++ ++  V+ ++ + + + L V+
Sbjct: 33 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM 88

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 3e-11
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          I++K V     A   G L  GD++++V+ +++  L      +L+  + + + L V
Sbjct: 33 IYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEV 87

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 4e-11
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL-LVV 62
            FI  V+  S A   G L  GD V+  N + +      EV  +I  S +   + ++V
Sbjct: 49  AFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIV 105

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.9 bits (124), Expect = 4e-11
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 6  DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
            ++I  V P       G L PGD++V++N +++  + + E   +I  + 
Sbjct: 34 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK 83

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 4e-11
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 8  IFIKHVRPHSPA--AAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAY----LHLLV 61
          + +  V P +PA      L  GD+VV +N + IA+  + +VV  I+ S       L LLV
Sbjct: 36 VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLV 95

Query: 62 VPKE 65
           P  
Sbjct: 96 RPNA 99

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 4e-11
 Identities = 10/65 (15%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL 60
          D     I +  V P+  A+  G +  G+ V+++N +++    + + + +++ +      +
Sbjct: 31 DLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAV 90

Query: 61 VVPKE 65
          +V ++
Sbjct: 91 IVTRK 95

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.9 bits (124), Expect = 5e-11
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          IFI  V P S A  AGL  GD+V+AVN+    D+ +++ V++++ +   + + V
Sbjct: 43 IFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAR-EISMRV 95

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 1e-10
 Identities = 11/56 (19%), Positives = 25/56 (44%)

Query: 9  FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK 64
           I  +   S AA  GL+    +  +N Q +  L  +++  ++  S   + + ++P 
Sbjct: 26 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA 81

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (120), Expect = 3e-10
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL------L 60
           IFIK +     A   G L   D+++AVN +T+      E ++ ++ S +          L
Sbjct: 57  IFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQL 116

Query: 61  VVPKEND 67
           V+ + + 
Sbjct: 117 VILRRSG 123

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (118), Expect = 4e-10
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 8  IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
          I++K + P   A + G +  GDRV+AVN  ++    + + V+ ++N+   +HLL+
Sbjct: 39 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 93

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (117), Expect = 5e-10
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND 67
          + I  + P S AAAA L PGD ++A++      + +A+    I+ +   L L +   E  
Sbjct: 31 LVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETR 90

Query: 68 L 68
          L
Sbjct: 91 L 91

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.0 bits (114), Expect = 2e-09
 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 3   EPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLV 61
           E  + IFI  +    PA  +G L  GD++++VN   + +  + +    ++N+   + ++ 
Sbjct: 30  EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA 89

Query: 62  V--PKENDLLQ 70
              P+E    +
Sbjct: 90  QYKPEEYSRFE 100

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 46.8 bits (111), Expect = 3e-09
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV 62
          + + +V+  +PAA  GL  GD ++  N Q + ++  AE+ +++ + P+ L L + 
Sbjct: 27 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLALNIQ 79

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 3e-09
 Identities = 10/68 (14%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 8   IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN 66
           + I  +   + +  +  + PGD ++ +    +  L   E   +I+  P     +V+ +++
Sbjct: 59  LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKS 118

Query: 67  DLLQLTSD 74
              + T+ 
Sbjct: 119 LQSKETTA 126

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 2e-08
 Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 1  MDEPMDTIFIKHVRPHSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHL 59
                 + I  +     A  +GL+  GD ++AVN++ + DL Y   +++++   +  H+
Sbjct: 21 ERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV 80

Query: 60 LVV 62
          +++
Sbjct: 81 VLI 83

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 44.5 bits (105), Expect = 3e-08
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 2  DEPMDT-IFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55
          +E  D  I+I  +      AA G + PGD ++ VN+    ++   + V+++++   
Sbjct: 24 NERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVH 79

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 3e-08
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 2   DEPMDT-IFIKHVRPHSPAA-AAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAY-LH 58
           D+  D  I+I  + P+S AA    +  GDR++ +N   + +    E V L+ +       
Sbjct: 43  DDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE--EAVALLTSEENKNFS 100

Query: 59  LLVVPKENDLLQLTSD 74
           LL+   E  L +   D
Sbjct: 101 LLIARPELQLDEGWMD 116

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (102), Expect = 8e-08
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 6  DTIFIKHVRPHSPAA-AAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLHLLV 61
          D+   + V+         GL  GD +V +N Q + +L + EVV ++++ P      L++
Sbjct: 29 DSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLII 87

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

 Score = 41.5 bits (97), Expect = 4e-07
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 2  DEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP 54
                + +    P  PA  AG   GD +V V+   +  +   +V  L+Q   
Sbjct: 15 GGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEA 67

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.9 bits (93), Expect = 1e-06
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 1  MDEPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA 55
           D+      I  V     AA AG+  G  V  V+++ I       +V  +++   
Sbjct: 11 NDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPIN--SADALVAAVRSKAP 63

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 3e-05
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 8  IFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQN 52
          + I  V   SPA  AGL PGD ++A+  Q + +    +V + ++ 
Sbjct: 33 VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT 75

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]} Length = 87

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

 Score = 35.3 bits (81), Expect = 7e-05
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 2/49 (4%)

Query: 10 IKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLH 58
          +   +      + GL  GD  VA+N   +       +  L Q+      
Sbjct: 23 VSPGKDPVLFESIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTE 69

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 32.3 bits (73), Expect = 0.001
 Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 16 HSPAAAAGLV-PGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLLQLTSD 74
           SP    G+   G  +  ++ +T+          L + +     + +  K  D   L  D
Sbjct: 30 KSPIFEYGIDPTGYLIEDIDGETVGAGSN-IYRVLSEKAGTSARIRLSGKGGDKRDLMID 88

Query: 75 LI 76
          ++
Sbjct: 89 IL 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	81
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.69
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.68
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.67
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.67
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.67
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.66
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.65
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.64
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.64
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.63
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.63
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.63
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.63
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.63
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.62
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.62
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.61
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.59
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.59
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	99.59
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.58
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.58
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.57
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.57
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.56
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.56
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.55
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.55
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.55
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.55
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.54
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.54
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.54
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.54
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.53
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.53
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.52
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.52
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.51
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.5
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.49
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.49
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.49
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.49
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.47
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.47
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.46
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.45
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.44
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.44
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	99.44
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.43
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	99.42
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	99.41
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.4
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.37
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.37
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.36
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	99.36
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.32
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.29
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.97

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.4e-16  Score=79.58  Aligned_cols=63  Identities=24%  Similarity=0.261  Sum_probs=57.9

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ...+++|..+.+++||++++|++||.|++|||.++.++++.++...+++.++.+.|++.|.++
T Consensus        23 ~~~~v~V~~v~~gs~A~~~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~L~V~R~~r   85 (85)
T d1rgwa_          23 FNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKR   85 (85)
T ss_dssp             GTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEESCCC
T ss_pred             CCCCEEEEEecCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence            355789999999999999999999999999999999999999999999988899999988753

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.9e-16  Score=76.56  Aligned_cols=60  Identities=25%  Similarity=0.351  Sum_probs=56.2

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      ..+++|..|.++|||+++||+.||.|++|||.++.++++.++...+++.+..+++.+.|-
T Consensus        17 ~~~~~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~v~R~   76 (77)
T d2f5ya1          17 DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM   76 (77)
T ss_dssp             SSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEC
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEEE
Confidence            457899999999999999999999999999999999999999999999989999998873

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.8e-16  Score=78.26  Aligned_cols=61  Identities=21%  Similarity=0.390  Sum_probs=57.4

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ..+++|..|.|+++|+++| |++||.|++|||.++.++++.++..++++.+..+.|++.|.+
T Consensus        30 ~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~v~L~v~R~g   91 (92)
T d1t2ma1          30 KLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQG   91 (92)
T ss_dssp             SCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEECC
T ss_pred             CCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            3479999999999999999 999999999999999999999999999998889999999875

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.2e-16  Score=78.13  Aligned_cols=62  Identities=29%  Similarity=0.416  Sum_probs=58.0

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ...+++|..|.|++||+++| |++||.|++|||.++.++++.++..+++..++.+.|++.|.+
T Consensus        29 ~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~~~v~L~v~Rpg   91 (92)
T d2fe5a1          29 GDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG   91 (92)
T ss_dssp             TBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEEEECCC
T ss_pred             CCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCCCEEEEEEECCC
Confidence            35689999999999999999 999999999999999999999999999998889999999875

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-15  Score=77.05  Aligned_cols=63  Identities=37%  Similarity=0.500  Sum_probs=57.6

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ...+++|..|.++++|+++|+++||.|++|||.++.++++.++...++..++.+.+++.+.+.
T Consensus        25 ~~~~~~V~~V~~g~~A~~aGl~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v~L~v~~~~~   87 (91)
T d1g9oa_          25 GKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET   87 (91)
T ss_dssp             TCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCC
T ss_pred             CCCCEEEEEEcCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEECCCC
Confidence            455789999999999999999999999999999999999999999999988899999886543

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.2e-16  Score=78.17  Aligned_cols=60  Identities=27%  Similarity=0.411  Sum_probs=56.5

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      ..+++|..|.++|||+++||++||.|++|||..+.++++.++...+++.++.+.|++.|+
T Consensus        38 ~~~i~V~~V~~gg~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   97 (97)
T d1x5qa1          38 DEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE   97 (97)
T ss_dssp             CCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEEC
T ss_pred             CCCEEEEEECCCChhHhhcccCCCEEEEECCEECCCCCHHHHHHHHhCCCCEEEEEEEEC
Confidence            457999999999999999999999999999999999999999999999888999999885

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=1.6e-15  Score=76.51  Aligned_cols=60  Identities=32%  Similarity=0.528  Sum_probs=56.9

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      ..+++|..|.++++|+++||+.||.|++|||.++.++++.++..+++..++.+.|++.|+
T Consensus        31 ~~g~~V~~V~~~g~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~R~   90 (91)
T d1m5za_          31 EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN   90 (91)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEEC
T ss_pred             CCCEEEEEECCCChhHhCcCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEEC
Confidence            568999999999999999999999999999999999999999999998889999999886

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.7e-15  Score=77.32  Aligned_cols=61  Identities=28%  Similarity=0.494  Sum_probs=57.0

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ..+++|..|.++++|+++| |++||.|++|||.++.++++.++..++++.+..+.|++.|+.
T Consensus        36 ~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~lk~~~~~v~L~v~R~~   97 (99)
T d1ozia_          36 HGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ   97 (99)
T ss_dssp             CCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEECCC
T ss_pred             CCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHHHCCCCeEEEEEEeCC
Confidence            4579999999999999999 999999999999999999999999999998889999998864

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.5e-16  Score=79.85  Aligned_cols=65  Identities=23%  Similarity=0.444  Sum_probs=58.7

Q ss_pred             CCCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcce
Q psy5713           3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDLL   69 (81)
Q Consensus         3 ~~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~~   69 (81)
                      ....|++|..|.|+|||+++||++||.|++|||+++.  ++.++..++...+..+.+++.|++..++
T Consensus        22 ~~~~Gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~~~~~~   86 (88)
T d1ky9b2          22 GKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQRGDSTIY   86 (88)
T ss_dssp             TTTSCCCBCCCCSSCTTGGGTCCSSCEEEEETTEECS--SHHHHHHHTTTCCSCCCEEEESSSCEEE
T ss_pred             CCCCeEEEEEECCCCHHHHcCCCCCcEEEEECCEEcC--CHHHHHHHHHhCCCEEEEEEEECCEEEE
Confidence            4567899999999999999999999999999999999  8999999998877889999999887653

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=1.5e-15  Score=76.89  Aligned_cols=59  Identities=31%  Similarity=0.516  Sum_probs=55.1

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP   63 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~   63 (81)
                      ..+++|..|.|++||+++| |++||.|++|||.++.++++.++..++++.+..++|++.|
T Consensus        34 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L~V~R   93 (94)
T d1ihja_          34 TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT   93 (94)
T ss_dssp             EEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             CCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEe
Confidence            3468999999999999999 9999999999999999999999999999988899999876

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.6e-15  Score=76.70  Aligned_cols=61  Identities=23%  Similarity=0.415  Sum_probs=56.9

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ..+++|..|.++|+|+++| |+.||.|++|||.++.++++.++..+++..++.+.|++.|..
T Consensus        30 ~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~L~v~R~~   91 (93)
T d1rgra_          30 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRK   91 (93)
T ss_dssp             CCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTTTEEEEEEECSC
T ss_pred             CCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeCC
Confidence            4588999999999999999 999999999999999999999999999988889999998753

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.4e-15  Score=77.33  Aligned_cols=59  Identities=37%  Similarity=0.583  Sum_probs=53.4

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP   63 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~   63 (81)
                      ..+++|..|.++|||+++| |++||.|++|||.++.++++.++..++++.++.+.|++.|
T Consensus        35 ~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~v~L~V~r   94 (96)
T d2fcfa1          35 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS   94 (96)
T ss_dssp             ---EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEEC
T ss_pred             CCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            4578999999999999998 9999999999999999999999999999888899998875

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.1e-15  Score=77.51  Aligned_cols=61  Identities=16%  Similarity=0.303  Sum_probs=56.6

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ..+++|..|.++|+|+++| |+.||.|++|||.++.++++.++..+++..++.+++++.|+.
T Consensus        32 ~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~k   93 (94)
T d1wf8a1          32 KLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREK   93 (94)
T ss_dssp             EEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEEEEEEC
T ss_pred             CCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            4468999999999999999 999999999999999999999999999998889999998753

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=8.2e-16  Score=77.98  Aligned_cols=63  Identities=30%  Similarity=0.361  Sum_probs=57.7

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ...+++|..|.|++||++++|++||.|++|||.++.++++.++..+++..+..+.|++.|...
T Consensus        28 ~~~~i~V~~v~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~~~   90 (94)
T d1vb7a_          28 FHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSG   90 (94)
T ss_dssp             TTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCC
T ss_pred             CCCCEEEEeccCCChhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            345789999999999999999999999999999999999999999999988899999998654

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=4.9e-15  Score=76.20  Aligned_cols=60  Identities=27%  Similarity=0.304  Sum_probs=55.4

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      ..+++|..|.++++|+++||++||.|++|||+++.++++.++...+++++..+.|++.+.
T Consensus        42 ~~~~~I~~v~~g~~A~~aGL~~GD~Il~INg~~v~~~~h~evv~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          42 PALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             CSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEE
T ss_pred             CCCEEEEEECCCCHHHHcCCCCCCEEEEEcCeEcCCCCHHHHHHHHHcCCCeEEEEEEec
Confidence            346899999999999999999999999999999999999999999999888999998763

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.63  E-value=5.5e-15  Score=74.59  Aligned_cols=64  Identities=19%  Similarity=0.352  Sum_probs=56.6

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCCc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKEND   67 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~~   67 (81)
                      ...+++|..+.++|||+++||++||.|++|||+++.++++.++...++... ..+.|++.|.+..
T Consensus        17 ~~~~v~V~~v~~gsPA~~AGl~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~~   81 (92)
T d1fc6a3          17 SGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAP   81 (92)
T ss_dssp             CSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEE
T ss_pred             CCceEEEEEecCCCChhHHhhHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECCCc
Confidence            345789999999999999999999999999999999999999999997544 5899999997654

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4e-15  Score=76.95  Aligned_cols=62  Identities=21%  Similarity=0.387  Sum_probs=57.3

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ...+++|..|.|+++|+++| |++||.|++|||+++.++++.++..+|+..++.+.+++.|..
T Consensus        39 ~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk~~~~~v~l~v~r~~  101 (107)
T d1uhpa_          39 SSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRT  101 (107)
T ss_dssp             CSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECC
T ss_pred             CCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECC
Confidence            45679999999999999999 999999999999999999999999999998889999998753

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=3.2e-15  Score=75.20  Aligned_cols=60  Identities=22%  Similarity=0.238  Sum_probs=55.9

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP   63 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~   63 (81)
                      ...+++|..|.|+++|+++| |++||.|++|||.++.++++.++..+++.++..+.|++.+
T Consensus        28 ~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v~~   88 (90)
T d1qava_          28 NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY   88 (90)
T ss_dssp             GTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEE
T ss_pred             CCCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEE
Confidence            34579999999999999999 9999999999999999999999999999998899998876

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=3.1e-15  Score=76.44  Aligned_cols=61  Identities=25%  Similarity=0.415  Sum_probs=56.9

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ..+++|..|.|+|+|+++| |++||.|++|||.++.++++.++..++++.++.+.|++.|+.
T Consensus        37 ~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~~~v~L~V~r~~   98 (99)
T d1p1da2          37 GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDE   98 (99)
T ss_dssp             TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             CCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            4579999999999999999 999999999999999999999999999998889999998764

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.9e-15  Score=74.60  Aligned_cols=63  Identities=13%  Similarity=0.295  Sum_probs=56.8

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..++++|..|.++|+|+++| |++||.|++|||.++.++++.++.+++++.+..++|.+.+..+
T Consensus        23 ~~~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~L~i~p~~~   86 (88)
T d1kwaa_          23 ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR   86 (88)
T ss_dssp             CGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEEECCCC
T ss_pred             CCCCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCc
Confidence            35689999999999999999 9999999999999999999999999999887888998875433

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.5e-15  Score=76.95  Aligned_cols=64  Identities=23%  Similarity=0.378  Sum_probs=58.6

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ...+++|..|.|+++|+++| |++||.|++|||+++.++++.++..+++..++.+.|++.|....
T Consensus        36 ~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~v~R~~~~  100 (105)
T d1whaa_          36 GDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGS  100 (105)
T ss_dssp             TCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEECCCC
T ss_pred             CCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            35679999999999999998 99999999999999999999999999998888999999987543

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.8e-15  Score=73.03  Aligned_cols=60  Identities=22%  Similarity=0.368  Sum_probs=53.6

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEe
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVP   63 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~   63 (81)
                      ..++++|..|.++|||+++||+.||.|++|||.++.++++.++..+++..+ ..+.+++.+
T Consensus        23 ~~~g~~V~~v~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~v~~   83 (85)
T d1w9ea1          23 IDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD   83 (85)
T ss_dssp             ETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEEC
T ss_pred             CCCCEEEEEECCCCHHHHcCCCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEEEEEeC
Confidence            356899999999999999999999999999999999999999999998765 578877754

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=1.7e-14  Score=73.14  Aligned_cols=65  Identities=26%  Similarity=0.481  Sum_probs=58.8

Q ss_pred             CCCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           3 EPMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         3 ~~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      +...+++|..+.++++|+++| |++||.|++|||.++.++++.++...|+..++.+.+++.|....
T Consensus        25 ~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~v~r~~~~   90 (95)
T d1n7ea_          25 EPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDA   90 (95)
T ss_dssp             STTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCCC
T ss_pred             cCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            345678999999999999999 99999999999999999999999999998888999999886543

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=5.5e-15  Score=75.96  Aligned_cols=65  Identities=14%  Similarity=0.144  Sum_probs=59.1

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ...+++|..+.++++|++++|++||.|++|||+++.++++.++.++++..++.+.|++.|.....
T Consensus        27 ~~~~v~V~~v~~g~~a~~~~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~v~R~~~~~   91 (103)
T d1wf7a_          27 FNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAA   91 (103)
T ss_dssp             TTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCCSCCC
T ss_pred             CCCCEEEEecCCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCCC
Confidence            45579999999999999999999999999999999999999999999998899999998876544

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-14  Score=74.26  Aligned_cols=62  Identities=26%  Similarity=0.404  Sum_probs=56.1

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ...|++|..|.++|||+++||++||+|++|||.++.  ++.++.+.++ .+..+.+++.|++...
T Consensus        29 ~~~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~V~--s~~dl~~~l~-~g~~v~l~v~R~g~~~   90 (100)
T d1lcya1          29 VQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVR-TQSQLAVQIRRGRETL   90 (100)
T ss_dssp             CSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHT-TCSSEEEEEEETTEEE
T ss_pred             CCCcEEEEEECCCchHhhcCCCCCcEEEEECCEEcC--CHHHHHHHhc-CCCEEEEEEEECCEEE
Confidence            356899999999999999999999999999999999  8999999885 4578999999988765

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.2e-14  Score=74.66  Aligned_cols=59  Identities=27%  Similarity=0.567  Sum_probs=55.1

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      ..+++|+.|.|++||+++ |++||.|++|||.++.++++.++..+++..++.+.|.+.|+
T Consensus        42 ~~gI~I~~V~~gs~A~~~-L~~GD~Il~VNg~~v~~~t~~eav~~l~~~~~~v~L~V~R~  100 (103)
T d2h3la1          42 DDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE  100 (103)
T ss_dssp             CCSEEEEEECTTSTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEEEEEE
T ss_pred             CCCEEEEEeCCCChHHhc-cCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEE
Confidence            458999999999999875 99999999999999999999999999999989999999875

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=1.7e-14  Score=73.56  Aligned_cols=59  Identities=27%  Similarity=0.419  Sum_probs=54.7

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP   63 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~   63 (81)
                      ..+++|..|.|+++|+++| |++||.|++|||.++.++++.++..+++..++.+.|++.+
T Consensus        37 ~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~p   96 (98)
T d1rzxa_          37 QPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKP   96 (98)
T ss_dssp             EEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHTCTEEEEEEEC
T ss_pred             CCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHHHcCCCeEEEEEEe
Confidence            3478999999999999999 9999999999999999999999999999988899988864

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.3e-14  Score=75.25  Aligned_cols=63  Identities=33%  Similarity=0.576  Sum_probs=57.6

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.++++|+++| |++||.|++|||..+.++++.++..+|+..+..+.|++.|....
T Consensus        35 ~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~v~l~v~r~~~~   98 (110)
T d1um1a_          35 APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVE   98 (110)
T ss_dssp             CSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEEEEEECCCHH
T ss_pred             CCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Confidence            3468999999999999999 99999999999999999999999999999889999999876543

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.3e-14  Score=76.00  Aligned_cols=65  Identities=18%  Similarity=0.197  Sum_probs=58.6

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ...+++|..|.++++|++++|++||.|++|||+++.++++.++..+++..+..+.|++.+.....
T Consensus        40 ~~~gi~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v~~~p~~~  104 (117)
T d1uita_          40 EKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHVH  104 (117)
T ss_dssp             TTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEECCCSCCC
T ss_pred             CCCCEEEEEEecCChHHhCCCCCCCEeeeECCcccCCCCHHHHHHHHHCCCCeEEEEEEECCcce
Confidence            34689999999999999999999999999999999999999999999988889999887765543

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.9e-14  Score=75.45  Aligned_cols=61  Identities=23%  Similarity=0.322  Sum_probs=56.4

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      .+++|..|.++++|+++| |++||.|++|||.++.+++++++..++++.+..+.|++.|...
T Consensus        49 ~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~~~v~l~v~r~~~  110 (117)
T d1ujda_          49 IGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLN  110 (117)
T ss_dssp             EEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESSCC
T ss_pred             cCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCeEEEEEEECCC
Confidence            368999999999999999 9999999999999999999999999999888889999987643

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.9e-14  Score=71.21  Aligned_cols=55  Identities=20%  Similarity=0.399  Sum_probs=52.0

Q ss_pred             EEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713           9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP   63 (81)
Q Consensus         9 ~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~   63 (81)
                      +|..|.+++||+++||++||.|++|||+++.++++.++..++++.+..++|++..
T Consensus        26 ~V~~v~~g~~A~~~Gl~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~v~l~v~p   80 (82)
T d1r6ja_          26 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP   80 (82)
T ss_dssp             EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             EEEEECCCChHHhcCcCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCEEEEEEEc
Confidence            6889999999999999999999999999999999999999999998899998864

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=6.2e-14  Score=70.08  Aligned_cols=62  Identities=21%  Similarity=0.173  Sum_probs=53.2

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND   67 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~   67 (81)
                      ...|++|..|.|+|||+++||++||.|++|||.++.  ++.++...+...  +..+.+++.|.+..
T Consensus        14 ~~~Gv~V~~V~~~spA~~aGl~~GD~I~~ing~~i~--~~~~~~~~i~~~~~g~~v~l~v~r~~g~   77 (88)
T d2z9ia1          14 DTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPIN--SADALVAAVRSKAPGATVALTFQDPSGG   77 (88)
T ss_dssp             -CCSEEEEEECTTSTTGGGTCCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEEETTTE
T ss_pred             CCCcEEEEEECCCCHHHHcCCCCCCEEEEeCCCcCC--cHHHHHHHHHhCCCCCEEEEEEEECCCC
Confidence            456899999999999999999999999999999999  788888887654  36999999986443

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=3e-14  Score=73.27  Aligned_cols=60  Identities=32%  Similarity=0.428  Sum_probs=53.7

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      ...+++|..|.++++|+++||++||.|++|||+++.++++.++..+++.. ..+.+++.+.
T Consensus        39 ~~~gi~V~~V~~~s~A~~~GL~~GD~Il~VNg~~v~~~~~~ev~~llk~~-~~v~l~V~~~   98 (104)
T d1wi2a_          39 SQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTA-REISMRVRFF   98 (104)
T ss_dssp             SCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHHS-SSEEEEEECC
T ss_pred             CCCCEEEEEECCCChhHhcccccCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEEEEEC
Confidence            34579999999999999999999999999999999999999999999886 4677887654

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=3e-14  Score=73.07  Aligned_cols=63  Identities=21%  Similarity=0.374  Sum_probs=57.7

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ..+++|..|.++++|+++| |++||.|++|||.++.++++.++..+++..+..+.+++.+....
T Consensus        32 ~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~L~v~~~~~~   95 (102)
T d1tp5a1          32 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEE   95 (102)
T ss_dssp             GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECHHH
T ss_pred             CCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCCeEEEEEEECCcc
Confidence            4589999999999999998 99999999999999999999999999998888999999876443

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=5.3e-15  Score=76.05  Aligned_cols=65  Identities=28%  Similarity=0.363  Sum_probs=59.1

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ...+++|..|.++++|++++|++||.|++|||..+.++++.++..+++..+..+.|++.|.+...
T Consensus        27 ~~~~i~V~~v~~g~~A~~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~~~~~   91 (103)
T d1v5la_          27 FNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL   91 (103)
T ss_dssp             TTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTTTT
T ss_pred             CCCCEEEEEccCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCccc
Confidence            44579999999999999999999999999999999999999999999988889999999876544

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.5e-14  Score=70.30  Aligned_cols=55  Identities=22%  Similarity=0.457  Sum_probs=51.6

Q ss_pred             EEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713           9 FIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP   63 (81)
Q Consensus         9 ~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~   63 (81)
                      +|..|.|+++|+++||+.||.|++|||.++.++++.++.+++++.++.+.+++.+
T Consensus        23 ~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~l~viP   77 (79)
T d1y7na1          23 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP   77 (79)
T ss_dssp             EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEEC
T ss_pred             EEEEEcCCCHHHHCCCCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEEEEEEc
Confidence            6889999999999999999999999999999999999999999988889888764

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.6e-15  Score=78.12  Aligned_cols=63  Identities=33%  Similarity=0.444  Sum_probs=57.7

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ...+++|..|.|+++|+++| |++||.|++|||+++.++++.++..+|+..+..+.|++.|...
T Consensus        42 ~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~v~L~V~r~~~  105 (111)
T d1ujua_          42 TDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFE  105 (111)
T ss_dssp             TCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEECCCCCCC
T ss_pred             CCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            35679999999999999999 9999999999999999999999999999888899999887654

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=2.3e-14  Score=73.26  Aligned_cols=60  Identities=27%  Similarity=0.471  Sum_probs=55.3

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVP   63 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~   63 (81)
                      ...+++|..|.++|+|+++| +++||.|++|||.++.++++.++..+++..++.+++++..
T Consensus        39 ~~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L~v~P   99 (100)
T d1va8a1          39 EMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIP   99 (100)
T ss_dssp             CSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEEEC
T ss_pred             cCCCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCeEEEEEEc
Confidence            45689999999999999999 9999999999999999999999999999988888888764

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=4.5e-14  Score=73.34  Aligned_cols=57  Identities=21%  Similarity=0.460  Sum_probs=50.2

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEE
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLL   60 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~   60 (81)
                      ...+++|..|.+++||+++| |++||.|++|||+.+.++++.++..+|+..+....+.
T Consensus        24 ~~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~~~   81 (112)
T d1qaua_          24 SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVV   81 (112)
T ss_dssp             SSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEE
T ss_pred             CCCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcEEE
Confidence            35679999999999999999 9999999999999999999999999999876433333

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.1e-14  Score=74.47  Aligned_cols=61  Identities=31%  Similarity=0.388  Sum_probs=54.5

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKE   65 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~   65 (81)
                      ...+++|..|.++++|+++||++||.|++|||+.+.++++.++.++|+.. ..+.+++.+..
T Consensus        44 ~~~gv~V~~V~~g~~A~~~gL~~GD~Il~INg~~v~~~s~~evv~~lr~~-~~v~l~v~~~~  104 (128)
T d1uf1a_          44 YGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS-RHLILTVKDVG  104 (128)
T ss_dssp             TTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTTC-SEEEEEEECCS
T ss_pred             CCCCEEEEEECCCChHHhcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CcEEEEEEECC
Confidence            34589999999999999999999999999999999999999999999876 57788887654

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.2e-14  Score=70.40  Aligned_cols=57  Identities=28%  Similarity=0.511  Sum_probs=53.3

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV   62 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~   62 (81)
                      .+++|..+.++++|+++| |++||.|++|||.++.++++.++..++++.++.++|++.
T Consensus        30 ~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~~v~L~Vl   87 (88)
T d2fnea1          30 LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVL   87 (88)
T ss_dssp             EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEE
T ss_pred             cCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEE
Confidence            468999999999999998 999999999999999999999999999998888888875

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-14  Score=74.53  Aligned_cols=60  Identities=35%  Similarity=0.528  Sum_probs=52.8

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      ...+++|..|.+++||+++||+.||.|++|||+++.++++.++.++++..+ .+.+++.+.
T Consensus        32 ~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~-~~~l~v~~~   91 (101)
T d1x5na1          32 QKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR-SLTISIVAA   91 (101)
T ss_dssp             SSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHCS-SEEEEECSS
T ss_pred             CCCCEEEEEECCCChHHhCCCCcccEEEEECCEECCCCCHHHHHHHHhCCC-CEEEEEEEC
Confidence            445899999999999999999999999999999999999999999998875 466666554

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.7e-14  Score=73.56  Aligned_cols=65  Identities=20%  Similarity=0.427  Sum_probs=58.7

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~   68 (81)
                      ...+++|..|.++++|++.| |++||.|++|||.++.++++.++..++++.+..+.|++.+.....
T Consensus        40 ~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~~~v~l~v~~~~~~~  105 (117)
T d1v62a_          40 NKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQ  105 (117)
T ss_dssp             SSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEEECCBTTBC
T ss_pred             CCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCCCcEEEEEEECCCCC
Confidence            45689999999999999998 999999999999999999999999999998889999988765543

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.53  E-value=9.7e-14  Score=69.92  Aligned_cols=60  Identities=23%  Similarity=0.428  Sum_probs=53.3

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC---CCeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS---PAYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~---~~~~~l~v~~~   64 (81)
                      ..+++|..|.|+|||++.| |++||.|++|||.++.++++.++.+.++..   +..+.|++.|.
T Consensus        28 ~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~~v~L~V~R~   91 (92)
T d2f0aa1          28 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKL   91 (92)
T ss_dssp             CCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEeC
Confidence            4589999999999999999 999999999999999999999999998753   35788888774

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.7e-14  Score=73.94  Aligned_cols=62  Identities=34%  Similarity=0.533  Sum_probs=56.7

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      ..+++|..|.|+++|+++| |++||.|++|||+++.++++.++..+|++.+..++|++.|...
T Consensus        42 ~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~~~~~~v~l~V~r~~~  104 (114)
T d1uewa_          42 TVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE  104 (114)
T ss_dssp             CCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEEECCCSC
T ss_pred             cCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            3468999999999999998 9999999999999999999999999999888899999987644

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.9e-14  Score=69.15  Aligned_cols=57  Identities=23%  Similarity=0.468  Sum_probs=50.5

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC--eEEEEE
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLHLLV   61 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~--~~~l~v   61 (81)
                      ..+++|..|.|+++|+++| |++||.|++|||+++.++++.++..+++..+.  .+.+.+
T Consensus        25 ~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v~L~V   84 (85)
T d1x45a1          25 LPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNI   84 (85)
T ss_dssp             SCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEEE
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEE
Confidence            4579999999999999999 99999999999999999999999999998754  455543

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=3.9e-14  Score=72.82  Aligned_cols=60  Identities=30%  Similarity=0.331  Sum_probs=54.9

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPK   64 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~   64 (81)
                      ...+++|..+.++|+|+ ++|++||.|++|||+++.++++.++..+++.++..+.+++.|.
T Consensus        37 ~~~~i~V~~v~~gs~A~-~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~~v~l~V~R~   96 (104)
T d2csja1          37 GETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRP   96 (104)
T ss_dssp             CCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             CCCCEEEEEECCCChhh-cCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            34679999999999997 5799999999999999999999999999998888999999875

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.8e-14  Score=72.76  Aligned_cols=64  Identities=19%  Similarity=0.391  Sum_probs=58.0

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEND   67 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~   67 (81)
                      ...+++|..|.++++|+++| |++||.|++|||.++.++++.++.++|+..+..+.|++.|....
T Consensus        34 ~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~~~v~l~v~R~~~s   98 (103)
T d1wfva_          34 YKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGS   98 (103)
T ss_dssp             TTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEEEECTTCS
T ss_pred             CCCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCEEEEEEEECCCC
Confidence            34578999999999999999 99999999999999999999999999998888999999886543

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.8e-14  Score=72.53  Aligned_cols=63  Identities=32%  Similarity=0.413  Sum_probs=54.5

Q ss_pred             CCCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Q psy5713           3 EPMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVVPKEN   66 (81)
Q Consensus         3 ~~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~   66 (81)
                      +...+++|..|.++++|+++||++||.|++|||+++.++++.++.++++..+ .+.+++.+.+.
T Consensus        32 ~~~~~i~V~~v~~gg~A~~~gL~~GD~Il~ING~~v~~~~~~~v~~ll~~~~-~~~l~V~~~~~   94 (101)
T d1ueza_          32 EHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSK-KLVLSVYSAGR   94 (101)
T ss_dssp             TTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSSS-SCCEEECCCCC
T ss_pred             cCCCCEEEEEECCCChHHhcCCCCCcEEEEECCEECCCCCHHHHHHHHhcCC-CEEEEEEECCC
Confidence            3455799999999999999999999999999999999999999999998874 46677766553

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=3.7e-14  Score=73.67  Aligned_cols=59  Identities=24%  Similarity=0.369  Sum_probs=53.3

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEe
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVP   63 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~   63 (81)
                      ..+++|..|.+++||+++||++||.|++|||.++.++++.++.++|+..+ ..+.|++.+
T Consensus        35 ~~~v~V~~V~~~spA~~~GL~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~v~~   94 (111)
T d1vaea_          35 NTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS   94 (111)
T ss_dssp             SSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred             CccEEEEEEcCCChHHhcccCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEEEEEEC
Confidence            45689999999999999999999999999999999999999999998875 578887764

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5e-13  Score=70.46  Aligned_cols=62  Identities=31%  Similarity=0.485  Sum_probs=56.1

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKE   65 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~   65 (81)
                      ...+++|..|.++++|+++| |++||.|++|||+++.++++.++..+|+..+  ..+.|++.|..
T Consensus        42 ~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~v~L~v~R~~  106 (123)
T d1ueqa_          42 PDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGY  106 (123)
T ss_dssp             SSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESC
T ss_pred             CCCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEcCC
Confidence            35689999999999999999 9999999999999999999999999998764  67899998853

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9e-14  Score=71.34  Aligned_cols=62  Identities=29%  Similarity=0.390  Sum_probs=55.1

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKE   65 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~   65 (81)
                      ...+++|..|.++++|+++| |++||.|++|||+++.++++.++..+|+..+  ..+.|++.|..
T Consensus        32 ~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~v~l~v~r~~   96 (103)
T d1uepa_          32 PGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV   96 (103)
T ss_dssp             TTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence            45678999999999999999 9999999999999999999999999998764  47888888753

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.6e-13  Score=69.55  Aligned_cols=59  Identities=20%  Similarity=0.448  Sum_probs=52.2

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC----CeEEEEEEe
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP----AYLHLLVVP   63 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~----~~~~l~v~~   63 (81)
                      ..+++|..|.++++|+++| |++||.|++|||+++.++++.++..++++..    .++.+.+.|
T Consensus        33 ~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~~~vel~~~R   96 (96)
T d1wi4a1          33 GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR   96 (96)
T ss_dssp             CSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEEC
T ss_pred             CCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCCeEEEEEEC
Confidence            3468999999999999999 9999999999999999999999999998753    567777654

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7.6e-14  Score=72.04  Aligned_cols=59  Identities=15%  Similarity=0.347  Sum_probs=52.2

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPAYLHLLVV   62 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~~~~l~v~   62 (81)
                      ...+++|..|.++|+|++.| |++||.|++|||..+.+++++++..+|+..+..+.+++.
T Consensus        33 ~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~l~v~   92 (107)
T d1x6da1          33 ENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIV   92 (107)
T ss_dssp             SCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEE
T ss_pred             CCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCEEEEEE
Confidence            45689999999999999998 999999999999999999999999999988765555544

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.7e-13  Score=70.09  Aligned_cols=58  Identities=28%  Similarity=0.369  Sum_probs=52.4

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEe
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVP   63 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~   63 (81)
                      .+++|..|.++++|++.| |++||.|++|||.++.+++++++..+++...  ..+.+++.|
T Consensus        47 ~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~R  107 (108)
T d2cssa1          47 LGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR  107 (108)
T ss_dssp             EEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEE
T ss_pred             cCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeC
Confidence            379999999999999999 9999999999999999999999999998653  578888776

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=4e-13  Score=70.36  Aligned_cols=63  Identities=24%  Similarity=0.435  Sum_probs=55.5

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC----CCeEEEEEEeCCC
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS----PAYLHLLVVPKEN   66 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~----~~~~~l~v~~~~~   66 (81)
                      ...+++|..|.|+++|++.| |+.||.|++|||.++.++++.++..+|++.    +..++|.+.|...
T Consensus        41 ~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r~pp  108 (118)
T d1v6ba_          41 PVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPP  108 (118)
T ss_dssp             SSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCCS
T ss_pred             CCCCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEeCCC
Confidence            34579999999999999998 999999999999999999999999999753    4688999988643

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.1e-13  Score=73.54  Aligned_cols=62  Identities=15%  Similarity=0.284  Sum_probs=55.9

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC-eEEEEEEeCCC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA-YLHLLVVPKEN   66 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~-~~~l~v~~~~~   66 (81)
                      ..+++|..|.++++|++.| |++||.|++|||..+.++++.++..+|+..+. .+.+++.|...
T Consensus        56 ~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~~~v~l~v~r~~~  119 (130)
T d1i16a_          56 DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL  119 (130)
T ss_dssp             CCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESS
T ss_pred             CCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCCCeEEEEEEcCCC
Confidence            4679999999999999999 99999999999999999999999999998764 88888887643

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.6e-14  Score=73.07  Aligned_cols=63  Identities=24%  Similarity=0.402  Sum_probs=55.7

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      ...|++|..|.++|||+++||+.||.|+++||.++.  +..++...+...  +..+.+.+.|++...
T Consensus        25 ~~~Gv~V~~V~~~spA~~aGl~~gDvI~~i~g~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~   89 (94)
T d1ky9a1          25 AQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGKQV   89 (94)
T ss_dssp             TCCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCC--SSHHHHHHTTSSBTTCCCEEEEESSSCEE
T ss_pred             CCCCcEEEECCCChhHHHhCCCcccEEEEECCEEeC--CHHHHHHHHHhCCCCCEEEEEEEECCEEE
Confidence            356999999999999999999999999999999999  888999988654  368999999988665

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.44  E-value=2.2e-13  Score=69.88  Aligned_cols=61  Identities=18%  Similarity=0.235  Sum_probs=53.2

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKEND   67 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~   67 (81)
                      +..|++|..|.+++||..+ |++||.|++|||+++.  ++.++...+...  ++.+.+.+.|++..
T Consensus         1 ~p~Gv~V~~V~~~sPA~~~-L~~GD~I~~ing~~v~--~~~~l~~~i~~~~~G~~v~l~v~R~~~~   63 (103)
T d2hgaa1           1 QPDGVQIDSVVPGSPASKV-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITTDQGTFH   63 (103)
T ss_dssp             CCCCEEEEEECSSSGGGGT-SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEETTEEEE
T ss_pred             CCCcEEEEEECCCChHHhc-CCCCCEEEEECCEEcC--CHHHHHHHHhhCCCCCEEEEEEEECCEE
Confidence            3568999999999999875 9999999999999999  999999999764  47899999886543

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.2e-13  Score=73.20  Aligned_cols=64  Identities=23%  Similarity=0.355  Sum_probs=57.1

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~~~~   68 (81)
                      ..+++|..|.++++|+++| |+.||.|++|||.++.++++.++.++|+..+  ..+.|.+.|.....
T Consensus        48 ~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v~L~v~R~~~~~  114 (126)
T d1wifa_          48 GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEI  114 (126)
T ss_dssp             TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESSSSCC
T ss_pred             CCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCEEEEEEEeCCCCC
Confidence            4568999999999999999 9999999999999999999999999998754  69999999875443

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=99.42  E-value=2.6e-13  Score=67.71  Aligned_cols=63  Identities=17%  Similarity=0.105  Sum_probs=55.5

Q ss_pred             CCCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      ...|+.|..+.++|++.++||++||.|+++||.++.  +..++...+...  +..+.+++.|++...
T Consensus        17 ~~~G~~v~~v~~~s~~~~aGl~~GDiI~~ing~~v~--~~~~~~~~~~~~~~~~~~~l~v~R~g~~~   81 (87)
T d2i6va1          17 KVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDGQQH   81 (87)
T ss_dssp             EEEEEEEEECSCHHHHHHTTCCTTCEEEEETTEETT--CHHHHHHHHHTGGGCSEEEEEEEETTEEE
T ss_pred             eEEEEEEecCCCCCHHHHCCCCCCCEEEEECCEEee--cHHHHHHHHHhhccccccEEEEEECCEEE
Confidence            445788999999999999999999999999999999  888998888653  469999999988765

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=3e-14  Score=72.67  Aligned_cols=62  Identities=23%  Similarity=0.447  Sum_probs=49.2

Q ss_pred             CCceEEEeeCCCCHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCcc
Q psy5713           5 MDTIFIKHVRPHSPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNS--PAYLHLLVVPKENDL   68 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~--~~~~~l~v~~~~~~~   68 (81)
                      ..|++|..|.+++||+++||++||.|++|||.++.  +..++...+...  +..+.+++.|++...
T Consensus        25 ~~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~   88 (99)
T d1sota1          25 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDKQL   88 (99)
T ss_dssp             --CEECCCCCSSSTTTSSSCCTTCEECBSSSSBCC--CSHHHHHHHHHSCTTCEEEECC-----CC
T ss_pred             CCccEEEEecCCCCHHHcCCCcceEEEEECCEecc--cHHHHHHHHHcCCCCCEEEEEEEECCEEE
Confidence            46899999999999999999999999999999999  778888877543  368999999988766

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=4.6e-13  Score=70.53  Aligned_cols=60  Identities=30%  Similarity=0.414  Sum_probs=51.5

Q ss_pred             CCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC--eEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSPA--YLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~~--~~~l~v~~~   64 (81)
                      ..+++|..|.|+++|++.| |++||.|++|||+++.+++++++.++|+..+.  .+.+.+.++
T Consensus        44 ~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~~~~~l~l~~~~~  106 (122)
T d1v5qa_          44 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFD  106 (122)
T ss_dssp             SSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred             CCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcCCCceEEEEEEecc
Confidence            4568999999999999999 99999999999999999999999999987664  455554444

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=8.9e-13  Score=69.81  Aligned_cols=60  Identities=25%  Similarity=0.387  Sum_probs=54.1

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC-------CCeEEEEEEeCC
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS-------PAYLHLLVVPKE   65 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~-------~~~~~l~v~~~~   65 (81)
                      .+++|..|.++++|++.| |++||.|++|||.++.++++.++..+|++.       ...++|.+.|..
T Consensus        55 ~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~~~~~~~V~L~V~R~~  122 (127)
T d1wg6a_          55 LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS  122 (127)
T ss_dssp             EEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECS
T ss_pred             CCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccccCCCCCEEEEEEeeCC
Confidence            378999999999999998 999999999999999999999999999764       368999998853

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8e-13  Score=67.29  Aligned_cols=59  Identities=29%  Similarity=0.402  Sum_probs=51.2

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEE
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVV   62 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~   62 (81)
                      ...+++|..+.+++||++.| |++||.|++|||+++.++++.++..++++.+  ..+.+.+.
T Consensus        36 ~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~~~~~l~l~v~   97 (99)
T d1x5ra1          36 LSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVLEVE   97 (99)
T ss_dssp             CSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEE
Confidence            35578999999999999999 9999999999999999999999999998654  45555554

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.1e-12  Score=66.41  Aligned_cols=60  Identities=35%  Similarity=0.484  Sum_probs=50.9

Q ss_pred             CCceEEEeeCCCCHHhhC--CCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC----CeEEEEEEeC
Q psy5713           5 MDTIFIKHVRPHSPAAAA--GLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP----AYLHLLVVPK   64 (81)
Q Consensus         5 ~~~~~V~~v~~~s~a~~~--gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~----~~~~l~v~~~   64 (81)
                      ..+++|..|.++++|+++  +|++||.|++|||.++.++++.++..+++.+.    ..+.+++.+.
T Consensus        33 ~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~~~~~v~L~vrp~   98 (106)
T d2cs5a1          33 KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN   98 (106)
T ss_dssp             TEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECC
T ss_pred             CCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCCcEEEEEECCC
Confidence            456899999999999986  69999999999999999999999999997542    3577766654

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.36  E-value=2.2e-12  Score=64.75  Aligned_cols=63  Identities=13%  Similarity=0.211  Sum_probs=53.0

Q ss_pred             CCCceEEEeeCCC--------CHHhhCCC-CCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPH--------SPAAAAGL-VPGDRVVAVNNQTIADLPYAEVVQLIQNSP-AYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~--------s~a~~~gl-~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-~~~~l~v~~~~~~~   68 (81)
                      .++++.|..+.+|        |||+++|+ ++||.|++|||+++.  ++.++...++... ..+.|++.|.+...
T Consensus        10 ~~~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~--~~~~~~~~l~g~~G~~V~L~i~R~g~~~   82 (91)
T d1k32a1          10 DGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVG--AGSNIYRVLSEKAGTSARIRLSGKGGDK   82 (91)
T ss_dssp             ETTEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECB--TTBCHHHHHHTTTTSEEEEEEECSSSCE
T ss_pred             ECCeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeec--CcceeEEEEecCCCCEEEEEEEeCCCCE
Confidence            3567889999887        99999998 899999999999998  5567788887654 69999999977654

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=9.5e-12  Score=65.52  Aligned_cols=63  Identities=29%  Similarity=0.444  Sum_probs=52.5

Q ss_pred             CCCceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCCcc
Q psy5713           4 PMDTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNS-PAYLHLLVVPKENDL   68 (81)
Q Consensus         4 ~~~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~-~~~~~l~v~~~~~~~   68 (81)
                      ...+++|..|.|+++|++.| |+.||.|++|||.++.  ++.++..++... ...+.+.+.|.....
T Consensus        46 ~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~--~~~~~~~~l~~~~~~~v~l~v~r~~~~~  110 (124)
T d1wh1a_          46 DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEENKNFSLLIARPELQL  110 (124)
T ss_dssp             SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSSCCSCCEEEEECSSCC
T ss_pred             CCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECC--CHHHHHHHHhhCCCCcEEEEEEeCCCcc
Confidence            45679999999999999998 9999999999999998  778888877764 357888887765443

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=8.4e-12  Score=63.84  Aligned_cols=58  Identities=22%  Similarity=0.296  Sum_probs=50.1

Q ss_pred             CceEEEeeCCCCHHhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-----CeEEEEEEe
Q psy5713           6 DTIFIKHVRPHSPAAAAG-LVPGDRVVAVNNQTIADLPYAEVVQLIQNSP-----AYLHLLVVP   63 (81)
Q Consensus         6 ~~~~V~~v~~~s~a~~~g-l~~gd~i~~ing~~~~~~~~~~~~~~l~~~~-----~~~~l~v~~   63 (81)
                      .+++|..|.|+++|+++| |++||.|++|||.++.++++.++..+|+..+     ..+.+.+.+
T Consensus        32 ~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~~~~~~l~v~~   95 (103)
T d1ufxa_          32 PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTE   95 (103)
T ss_dssp             SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECC
T ss_pred             CCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCccceEEEEEeC
Confidence            358999999999999999 9999999999999999999999999998642     456666543

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=3.8e-09  Score=53.06  Aligned_cols=49  Identities=27%  Similarity=0.509  Sum_probs=42.2

Q ss_pred             CHHhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCC
Q psy5713          17 SPAAAAGLVPGDRVVAVNNQTIADLPYAEVVQLIQNSP--AYLHLLVVPKE   65 (81)
Q Consensus        17 s~a~~~gl~~gd~i~~ing~~~~~~~~~~~~~~l~~~~--~~~~l~v~~~~   65 (81)
                      .++..++|++||.|++|||+++.+++++++..+|+..+  ..+.|++.|..
T Consensus        41 ~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~v~R~~   91 (96)
T d1ujva_          41 DIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGS   91 (96)
T ss_dssp             CGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCS
T ss_pred             CcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECC
Confidence            35555679999999999999999999999999999753  68999998854